BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0083 (PAB0083) DE:Hypothetical protein
(399 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (st... 809 0.0
pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (st... 397 e-109
pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (st... 301 1e-80
pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii ... 288 8e-77
gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfat... 226 3e-58
pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (st... 209 5e-53
pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii ... 204 1e-51
pir||D72356 conserved hypothetical protein - Thermotoga maritima... 114 2e-24
gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfat... 78 2e-13
gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfat... 77 3e-13
>pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (strain Orsay)
>gi|5457566|emb|CAB49057.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 399
Score = 809 bits (2067), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 1 MDLEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKL 60
MDLEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKL
Sbjct: 1 MDLEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKL 60
Query: 61 LIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVR 120
LIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVR
Sbjct: 61 LIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVR 120
Query: 121 NWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQL 180
NWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQL
Sbjct: 121 NWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQL 180
Query: 181 IFGVEEYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETARE 240
IFGVEEYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETARE
Sbjct: 181 IFGVEEYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETARE 240
Query: 241 ILGAIISKAPSPVSYSELARDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQNKNR 300
ILGAIISKAPSPVSYSELARDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQNKNR
Sbjct: 241 ILGAIISKAPSPVSYSELARDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQNKNR 300
Query: 301 KIAIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVPGMR 360
KIAIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVPGMR
Sbjct: 301 KIAIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVPGMR 360
Query: 361 VEVKSGKSLGRRYPSDVIILTGRDVPRFLHAIQYHHALE 399
VEVKSGKSLGRRYPSDVIILTGRDVPRFLHAIQYHHALE
Sbjct: 361 VEVKSGKSLGRRYPSDVIILTGRDVPRFLHAIQYHHALE 399
>pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (strain Orsay)
>gi|5458654|emb|CAB50142.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 405
Score = 397 bits (1008), Expect = e-109
Identities = 190/390 (48%), Positives = 276/390 (70%), Gaps = 7/390 (1%)
Query: 3 LEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKLLI 62
LE NPWWF E D D E + L YK P W+ ELSL PFS+NF++GPRRVGKTLG+KLLI
Sbjct: 21 LELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLGIKLLI 80
Query: 63 KQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVRNW 122
++LL+ R+ PY IFY+ C +L+D +LLD+L YL+LK+ K +KS+ IFLDEV+ V +W
Sbjct: 81 RELLK-RVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSLVDDW 139
Query: 123 WKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQLIF 182
W+ + LI+R +L+NDVV + GS+ + + + F GRRG GK +++MPL F +YY L +
Sbjct: 140 WRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYYGLFY 199
Query: 183 GVEEYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETAREIL 242
+E+F KG E FE YL+TGGY AYLN ++ ++VG LKADL++L+R D AR+I+
Sbjct: 200 --DEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKADLKALDRSTD--LARDIM 255
Query: 243 GAIISKAPSPVSYSELARDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQNKNRKI 302
GAI+ KAPSP S++ +A+ VG++ TVR Y+ + +LL++ + + K RK+
Sbjct: 256 GAILDKAPSPTSFNAIAKVVGVSPHTVRDYVELFEAFHVLLQVLYLGGDGKIYPRKERKL 315
Query: 303 AIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVPGMRVE 362
+RDPL+ RA+ W + +++ +VLYEW+VQEHLYRKF E++Y+ + +YE+DA+ ++VE
Sbjct: 316 ILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRN-SYEVDAIAGNLKVE 374
Query: 363 VKSGKSLGRRYPSDVIILTGRDVPRFLHAI 392
VKSG+ RRYP DV +L G +V FL++I
Sbjct: 375 VKSGEK-RRRYPRDVRVLNGFEVLEFLYSI 403
>pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (strain Orsay)
>gi|5458321|emb|CAB49810.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 397
Score = 301 bits (762), Expect = 1e-80
Identities = 161/392 (41%), Positives = 241/392 (61%), Gaps = 14/392 (3%)
Query: 2 DLEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKLL 61
D+ NPWW +ED ++ W + + P W++ELSL+PFS+NF++GPR+VGKT G+KLL
Sbjct: 5 DIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTGIKLL 64
Query: 62 IKQLLENRISNPYE-IFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVR 120
I++LL N NP E I Y + +L +LL +LR + +LK + IK+ IFLDEVT +
Sbjct: 65 IQELLRN---NPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFLE 121
Query: 121 NWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQL 180
WW+G+ LI+ L NDV+ I GS + + + I F GRRG+GK +E+MPL F +Y +
Sbjct: 122 GWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE- 180
Query: 181 IFGVE--EYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETA 238
I G++ E K + FE YL TGG+ +N D++G+ +L + K E A
Sbjct: 181 IMGIKKPELHREKVLKLFEDYLTTGGFPPSIN-GFPMEDLLGAYIGEL--VRFGKSLEIA 237
Query: 239 REILGAIISKAPSPVSYSELA-RDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQN 297
RE AII +PS S+ LA G + ++ Y+ EL I L I + + G ++
Sbjct: 238 RETFAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYI-LGIAYLKQGNQIMYR 296
Query: 298 KNRKIAIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVP 357
+ +K RDPL+A+ A W+ ++L + LYEW+VQEH+YR+F E+YY+ + +YE+D V
Sbjct: 297 REKKFFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRN-SYEVDVVAK 355
Query: 358 GMRVEVKSGKSLGRRYPSDVIILTGRDVPRFL 389
+R+EVK+GK+ RRYP +VI+L D+P FL
Sbjct: 356 NLRIEVKAGKA-HRRYPRNVIVLEREDIPFFL 386
>pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii
>gi|3257248|dbj|BAA29931.1| (AP000003) 396aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 396
Score = 288 bits (729), Expect = 8e-77
Identities = 153/390 (39%), Positives = 238/390 (60%), Gaps = 10/390 (2%)
Query: 2 DLEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKLL 61
D+ NPWW +ED +++W + + P WIRE+SL+PFS+NF++GPR+VGKT G+KLL
Sbjct: 7 DITYMNPWWEGKEDYHVKQWEKQKVHWEPKWIREISLKPFSLNFVLGPRQVGKTTGIKLL 66
Query: 62 IKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVRN 121
I+++LE + P + Y + +L +LLD++R + +LK+ + IK+ IFLDE +S+
Sbjct: 67 IQKILEE--NPPESVLYLNLEILPTYRELLDIIREFQELKKEEGIKTGYIFLDEASSLEG 124
Query: 122 WWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQLI 181
WW+G+ LI+ L NDV+ + GS + + R I F GRRG GK LE+MPL F +Y +++
Sbjct: 125 WWRGVKPLIDSGLLENDVITVTGSSSLRVRRDIELFPGRRGGGKTLEVMPLSFPEYARVM 184
Query: 182 FGVEEYFE-RKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETARE 240
+ E K + FE Y++TGG+ +N D++G+ + + K E A+E
Sbjct: 185 GLKKHKLEGSKVIKLFEKYIQTGGFPGSIN-GFPMEDLLGAYIGEF--VRFGKSLEIAKE 241
Query: 241 ILGAIISKAPSPVSYSELAR-DVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQNKN 299
I A+I APS S+ LA G + V+ YI +L I L + + + G V+ +
Sbjct: 242 IFSALIRSAPSATSFRALAEMTSGYSYKVVQDYIEFFRDLYI-LGMAYLKQGNQVMYRRE 300
Query: 300 RKIAIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVPGM 359
+K RDPL+A+ + W+ ++ LYEW+VQEH++RKF EI+YF + +YEID + M
Sbjct: 301 KKFFFRDPLLAKLFSLWSGTEIGKDALYEWIVQEHVFRKFGEIHYFRN-SYEIDIIASDM 359
Query: 360 RVEVKSGKSLGRRYPSDVIILTGRDVPRFL 389
++EVK+GK+ R+YP V +L DVP FL
Sbjct: 360 KIEVKAGKA-HRKYPRGVKVLEKEDVPFFL 388
>gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 409
Score = 226 bits (571), Expect = 3e-58
Identities = 135/360 (37%), Positives = 205/360 (56%), Gaps = 13/360 (3%)
Query: 5 EYNPWW----FHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKL 60
E N WW + EED DI++WN+ ++K++P I ++SL+PFS+NFI+GPR+VGKT +KL
Sbjct: 2 EENIWWRGKDYIEEDEDIKKWNSAKFKWIPKEINKISLQPFSLNFIVGPRQVGKTTLIKL 61
Query: 61 LIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVR 120
LIK+LLE+ NP IFY C ++ D +LL R YLK+++ + IKSS IFLDEVT V+
Sbjct: 62 LIKKLLESN-HNPLSIFYCSCDLVSDYEELLKRTRDYLKIRKQEGIKSSFIFLDEVTFVK 120
Query: 121 NWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQL 180
W++ + LI+ +L +DVV + GS + + + F GRRGNG + + PL F Y +
Sbjct: 121 EWYRAVKHLIDTGELTSDVVTVSGSSSLTILKQKESFPGRRGNGTDVILYPLSFSGYINV 180
Query: 181 I---FGVEEYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPET 237
I V + + +E FE YLK GG +N + ++ + R D
Sbjct: 181 INPKIEVRPGWYSEIEELFESYLKVGGLPPSINGLSPLKTYTEWIIYEINRVGR--DEML 238
Query: 238 AREILGAIISKAPSPVSYSELARDVGINRDTVRSYISVLVELKILLEIPFSE-HGKMVLQ 296
A++IL A++S PS VSY+ +A+++G+N TV YI + ++ + L + F + +
Sbjct: 239 AKQILSAVLSTTPSKVSYNSIAKEIGVNHRTVAEYIKLFNDMFLTLTLHFIDVNTGYYNY 298
Query: 297 NKNRKIAIRDPLMARALAEWAKVKL-EDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAV 355
K KI DPL ++ W VK +D ++ E +V HL R + I Y EID V
Sbjct: 299 RKQIKIHFVDPLFYDVMSTWTGVKRPDDPIIVEGIVASHLSRIY-SIGYTEVGKEEIDVV 357
>pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (strain Orsay)
>gi|5458944|emb|CAB50431.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 437
Score = 209 bits (526), Expect = 5e-53
Identities = 135/397 (34%), Positives = 214/397 (53%), Gaps = 40/397 (10%)
Query: 3 LEEYNPWW----FHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGV 58
+E++NPWW F ED D +W K++P I ++SLEPFS+NFI GPR+VGKT +
Sbjct: 2 IEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLL 61
Query: 59 KLLIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTS 118
KL+IK+LL++ + NP IFY C L D +L++ L Y++L+E + I++S IFLDE+T
Sbjct: 62 KLIIKRLLDSGV-NPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
Query: 119 VRNWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDY- 177
R W++ I ++ K +NDV+++ GSV + L I F GRRG GK + + PL FRD+
Sbjct: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
Query: 178 -------YQLIFGVEEY-----------FERKGQEAFEMYLKTGGYAAYLNRRIRKSDIV 219
Y+ I V E ++ + F +YL++GG+ + + K +
Sbjct: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
Query: 220 GS--------LKADLRSLEREKDPETAREILGAIISKAPSPVSYSELARDVGI-NRDTVR 270
G ++ D+ ++ K E AR I+ I+ K PSP+ ++ +AR++ I + TV
Sbjct: 241 GDTYDTYLSWVRGDI--IKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVF 298
Query: 271 SYISVLVELKILLEIPFSEHGKMVLQ-NKNRKIAIRDPLMARALAEWAKV-KLEDSVLYE 328
SYI L + IL + + + + K +K+ + DP + + W V K + + E
Sbjct: 299 SYIEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVE 358
Query: 329 WVVQEHLYRKFREIYYFMSENYEIDAVV-PGMRVEVK 364
VV HL RK+ Y+ E+D V G+ EVK
Sbjct: 359 SVVASHLARKYEVGYW--RNGKEVDVVTKSGIGFEVK 393
>pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii
>gi|3257335|dbj|BAA30018.1| (AP000004) 435aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 435
Score = 204 bits (514), Expect = 1e-51
Identities = 130/398 (32%), Positives = 218/398 (54%), Gaps = 42/398 (10%)
Query: 3 LEEYNPWWFH----EEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGV 58
+E +NPWW EED D +W E +++P I+++SLEPFS+N I GPR+VGKT +
Sbjct: 2 IEHFNPWWKGREGIEEDEDYRKWIGSEVRWVPEVIKKISLEPFSLNIIFGPRQVGKTTLL 61
Query: 59 KLLIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTS 118
KL++K+LL+ NP IFY C + D +L++V+ YL++KE++ IKSS I LDEVT
Sbjct: 62 KLIVKKLLDEG-KNPRSIFYLRCDYISDYKELMNVIDEYLEIKETEGIKSSYILLDEVTF 120
Query: 119 VRNWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYY 178
+ W++ I I+ K RNDV+++ GS + + F GRRG GK ++PL FR++
Sbjct: 121 PKEWFRAIKLYIDMGKFRNDVLILTGSTSMYTKGEVETFPGRRGKGKDAVMLPLTFREFI 180
Query: 179 QL--------------IFGVEEY-----FERKGQEAFEMYLKTGGYAAYLNRRIRKSDI- 218
++ + VEE F + F++YL +GG+ + ++ + +
Sbjct: 181 KIASPKLHSVLPRINSLNKVEECLKAIPFIEELNSLFKLYLISGGFPRAVKDLLKHNKVS 240
Query: 219 -------VGSLKADLRSLEREKDPETAREILGAIISKAPSPVSYSELARDVGI-NRDTVR 270
+ ++ D+ L+ K E AR I+ II K PSPVS+ +A+++ I + TV
Sbjct: 241 EETYETYISWMRGDI--LKLGKSEEVARRIMKTIIKKLPSPVSWHGIAKEIDIGSHKTVF 298
Query: 271 SYISVLVELKILLEIPFSEHGKMVLQ-NKNRKIAIRDPLMARALAEWAKVK--LEDSVLY 327
SYI + + ++ +P+ + K+ + +K+ + DP + ++ W + ED ++
Sbjct: 299 SYIELFERMFLIRVLPYIDPDKLEADFKREKKVHLIDPFLYHLVSRWTLTEEPSEDKIV- 357
Query: 328 EWVVQEHLYRKFREIYYFMSENYEIDAVV-PGMRVEVK 364
E VV H+ R++ Y+ + EID V G+ +EVK
Sbjct: 358 ESVVATHVARRYEVGYW--RDGREIDVVTREGVGIEVK 393
>pir||D72356 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981136|gb|AAD35701.1|AE001735_14 (AE001735)
conserved hypothetical protein [Thermotoga maritima]
Length = 463
Score = 114 bits (283), Expect = 2e-24
Identities = 86/329 (26%), Positives = 158/329 (47%), Gaps = 36/329 (10%)
Query: 7 NPWWFHEE----DPDIEEWNTLEYKYMP-SWIRELSLEPFSVNFIIGPRRVGKTLGVKLL 61
NPWW E D I + +KY P + +++ L + I GPR+VGKT +KL
Sbjct: 8 NPWWRDPEIINTDRHISMFENSTFKYFPENLFKKIPLNKPGIYTIRGPRQVGKTTFLKLY 67
Query: 62 IKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVRN 121
I++LL + + P IF++ C + D+ +L++ ++AY ++ E K ++ +F+DE+T+V +
Sbjct: 68 IRKLLRDGVK-PSNIFFFTCDAVKDRFELIETMKAYFQIFERKAGETRYLFIDEITAVED 126
Query: 122 WWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQLI 181
W K I L++ L N ++++ GS +L RS GR+G G+ L +PL F ++ + +
Sbjct: 127 WQKSIKYLVDIGLLENSLLILTGSSAFDLKRSSERLPGRKGYGEDLVYLPLTFGEFLESL 186
Query: 182 ------FGVEEYFERKGQEA-------------FEMYLKTGGYAAYLNRRIRKSDIVGSL 222
V++ F + +E F YL TGG+ ++ +++ I
Sbjct: 187 GISVERMSVDDIFLKSEEELRILYLKNSFLKEYFVKYLNTGGFPKVIDVFLKEGKIDEIT 246
Query: 223 KADLRSL---EREKDPETAREILGAIISKAPSPV-------SYSELARDVGINRDTVRSY 272
K R + EK + +++ I K P V S ++ + DT++ Y
Sbjct: 247 KGVFRDFILGDAEKYLGSRIKVI-EIFKKLPDIVGQRFSWNSLVDIFSGAIESVDTIQKY 305
Query: 273 ISVLVELKILLEIPFSEHGKMVLQNKNRK 301
L IL+ + F + + ++ K +K
Sbjct: 306 FEYLGYSFILMNVFFVDISRKTVRLKKQK 334
>gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 287
Score = 77.6 bits (188), Expect = 2e-13
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 7 NPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKLLIKQLL 66
NPWW +++ +E+ + + + I E +L I+GPR+VGKT +K IK LL
Sbjct: 17 NPWWV-DKNRILEDEHVKRARVIVPPIDESAL-------ILGPRQVGKTTYLKTTIKTLL 68
Query: 67 ENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVRNWWKGI 126
E S I ++ C + +L+ ++ Y L R +S+ IFLDE+TSV +W +
Sbjct: 69 ERVDSR--SILFFSCDAFSKKEELIGLVNEYRTLVN--REESAYIFLDEITSVSDWNTAL 124
Query: 127 IDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQLIFG--V 184
+ L N N +V + GS INL + + GR K PL FR Y+ + +
Sbjct: 125 LHLFNAGYFNNSLVYVTGSSSINLRKEM--LPGR--PIKKYVFYPLNFRVYFDSFYKKLI 180
Query: 185 EEYFE-RKGQEAFEMYLKTGGYAAYLNRRI 213
+++ + + E +E LK Y + LN+ +
Sbjct: 181 QDHVKVDEKDELYENALKLLPYISELNKAL 210
>gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 432
Score = 77.3 bits (187), Expect = 3e-13
Identities = 70/329 (21%), Positives = 150/329 (45%), Gaps = 25/329 (7%)
Query: 46 IIGPRRVGKTLGVKLLIKQLLENRISNPYE--IFYYDCTMLDD---QNDLLDVLRAYLKL 100
+IG +R GK+ + ++K+L+E + +P++ I ++ + D NDL + Y +L
Sbjct: 44 VIGVKRSGKSTIINQVVKKLIEKKGEDPFDTLIVNFEDSRFGDIRTANDLFSLYELYKEL 103
Query: 101 KESKRIKSSLIFLDEVTSVRNWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGR 160
++ K+ IFLDEV ++ W + +++RK+ +VI GS ++S+
Sbjct: 104 RKKKKDSKPYIFLDEVQKIKGWEGFVRSIVDRKEAN---IVISGSTASVNNKSVREVLA- 159
Query: 161 RGNGKILEIMPLGFRDYYQL-IFGVEEYFERKGQEA-----FEMYLKTGGYAAYLNRRIR 214
G ILE+ PL F+++ + +E + +E+ F YL GG+ ++
Sbjct: 160 -GRHLILEVFPLSFKEFLEFKNIRLETELDMIAKESEIKVLFSEYLSYGGFPLVVSNERD 218
Query: 215 KSDIVGSLKADL--RSLERE---KDPETAREILGAIISKAPSPVSYSELARDVGINRDTV 269
K I+ L D+ + + E ++ E A+ + IS + + + +++R + I V
Sbjct: 219 KEKILLQLYEDIIFKDVISECNIRNEEEAKNLAIFYISNVGNKIRFRKISRSLNIPFRNV 278
Query: 270 RSYISVLVELKILLEIPFSEHGKMVLQNKNRKIAIRDPLMARALAEWAKVKLEDSVLYEW 329
+ Y + ++ + + ++K+ D ++ L ++ L+E
Sbjct: 279 QRYTECMKNAYLIFFVKALSPKLSEMAKYDKKVYCIDNGISNVLG--YRLNQNIGSLFEN 336
Query: 330 VVQEHLYRKF--REIYYFMSENYEIDAVV 356
++ L R++ ++Y+ E+D VV
Sbjct: 337 LIFLELLRRYGINNVFYYRGRRGEVDFVV 365
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.416
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149072835
Number of Sequences: 2977
Number of extensions: 6240962
Number of successful extensions: 15415
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15375
Number of HSP's gapped (non-prelim): 11
length of query: 399
length of database: 189,106,746
effective HSP length: 54
effective length of query: 345
effective length of database: 156,788,448
effective search space: 54092014560
effective search space used: 54092014560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)