BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0085 (PAB0085) DE:Hypothetical protein
         (384 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75201 hypothetical protein PAB0085 - Pyrococcus abyssi (st...   766  0.0
pir||G71234 hypothetical protein PH0137 - Pyrococcus horikoshii ...   702  0.0

>pir||D75201 hypothetical protein PAB0085 - Pyrococcus abyssi (strain Orsay)
           >gi|5457568|emb|CAB49059.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 384
           
 Score =  766 bits (1957), Expect = 0.0
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MKVIAEVEIMGKYGIFYRWLLPAIIFQSVFMGGGFTTGREVMEYAGKYGVYGIYSVILAT 60
           MKVIAEVEIMGKYGIFYRWLLPAIIFQSVFMGGGFTTGREVMEYAGKYGVYGIYSVILAT
Sbjct: 1   MKVIAEVEIMGKYGIFYRWLLPAIIFQSVFMGGGFTTGREVMEYAGKYGVYGIYSVILAT 60

Query: 61  ILFFISAALSYEVARVFKAFDYRTWVKQIIWKFWPIFDIAYVILAIIVIAVVGSAAANIL 120
           ILFFISAALSYEVARVFKAFDYRTWVKQIIWKFWPIFDIAYVILAIIVIAVVGSAAANIL
Sbjct: 61  ILFFISAALSYEVARVFKAFDYRTWVKQIIWKFWPIFDIAYVILAIIVIAVVGSAAANIL 120

Query: 121 EDMFGLPYMLGAIVIISTVGILHFYGRKAIEAFETIGTVILYIMYIILWAVTLKAAWGNI 180
           EDMFGLPYMLGAIVIISTVGILHFYGRKAIEAFETIGTVILYIMYIILWAVTLKAAWGNI
Sbjct: 121 EDMFGLPYMLGAIVIISTVGILHFYGRKAIEAFETIGTVILYIMYIILWAVTLKAAWGNI 180

Query: 181 SEAFSAGLGTGGPGKAAISGIQYFAYNMVVVPAVLFTLDRLESRKDSIIAGLNSALFVGI 240
           SEAFSAGLGTGGPGKAAISGIQYFAYNMVVVPAVLFTLDRLESRKDSIIAGLNSALFVGI
Sbjct: 181 SEAFSAGLGTGGPGKAAISGIQYFAYNMVVVPAVLFTLDRLESRKDSIIAGLNSALFVGI 240

Query: 241 AFFLTWLSLLGFYTNEKVVNAPVPWYEIMKIVGATWLRGFYVIAVFWTLIETGTGMIHSI 300
           AFFLTWLSLLGFYTNEKVVNAPVPWYEIMKIVGATWLRGFYVIAVFWTLIETGTGMIHSI
Sbjct: 241 AFFLTWLSLLGFYTNEKVVNAPVPWYEIMKIVGATWLRGFYVIAVFWTLIETGTGMIHSI 300

Query: 301 VRRIEVQMEEMKGISFTRKQEALLATLIIVLAILMAKFGIIALVAKGYGTLAWVFFVILF 360
           VRRIEVQMEEMKGISFTRKQEALLATLIIVLAILMAKFGIIALVAKGYGTLAWVFFVILF
Sbjct: 301 VRRIEVQMEEMKGISFTRKQEALLATLIIVLAILMAKFGIIALVAKGYGTLAWVFFVILF 360

Query: 361 IPLVTIGVIRILNPNWMKEFWEKA 384
           IPLVTIGVIRILNPNWMKEFWEKA
Sbjct: 361 IPLVTIGVIRILNPNWMKEFWEKA 384


>pir||G71234 hypothetical protein PH0137 - Pyrococcus horikoshii
           >gi|3256523|dbj|BAA29206.1| (AP000001) 378aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 378
           
 Score =  702 bits (1791), Expect = 0.0
 Identities = 336/373 (90%), Positives = 360/373 (96%)

Query: 12  KYGIFYRWLLPAIIFQSVFMGGGFTTGREVMEYAGKYGVYGIYSVILATILFFISAALSY 71
           +YGIFYRWLLPAIIFQSVFMGGGFTTGREVMEYAGKYGVYGIYSV++ATILFFISAALSY
Sbjct: 6   RYGIFYRWLLPAIIFQSVFMGGGFTTGREVMEYAGKYGVYGIYSVVIATILFFISAALSY 65

Query: 72  EVARVFKAFDYRTWVKQIIWKFWPIFDIAYVILAIIVIAVVGSAAANILEDMFGLPYMLG 131
           EVARVFKAFDYRTWVKQIIWKFWP+FDIAY+ILAIIVIAVVGSAAA+ILEDMFGLPYM+G
Sbjct: 66  EVARVFKAFDYRTWVKQIIWKFWPLFDIAYIILAIIVIAVVGSAAASILEDMFGLPYMIG 125

Query: 132 AIVIISTVGILHFYGRKAIEAFETIGTVILYIMYIILWAVTLKAAWGNISEAFSAGLGTG 191
           A+VIIS VG+LHFYGRKAIEAFET+GT+ILYIMYIILW VTLKAAWGNI +AF+  LG G
Sbjct: 126 AVVIISMVGLLHFYGRKAIEAFETLGTIILYIMYIILWVVTLKAAWGNIGDAFAKNLGVG 185

Query: 192 GPGKAAISGIQYFAYNMVVVPAVLFTLDRLESRKDSIIAGLNSALFVGIAFFLTWLSLLG 251
           GPGKA ISGIQYFAYNMVVVPAVLFTLDRLESRKDSIIAG NSALFVG+AFFLTWLSLLG
Sbjct: 186 GPGKALISGIQYFAYNMVVVPAVLFTLDRLESRKDSIIAGFNSALFVGVAFFLTWLSLLG 245

Query: 252 FYTNEKVVNAPVPWYEIMKIVGATWLRGFYVIAVFWTLIETGTGMIHSIVRRIEVQMEEM 311
           FYTNE VVNAPVPWYEIMKIVGATWLRGFYVIAVFWTLIETGTGMIHSIVRRI+VQ+EE 
Sbjct: 246 FYTNENVVNAPVPWYEIMKIVGATWLRGFYVIAVFWTLIETGTGMIHSIVRRIDVQLEEA 305

Query: 312 KGISFTRKQEALLATLIIVLAILMAKFGIIALVAKGYGTLAWVFFVILFIPLVTIGVIRI 371
           KGISFTR+QEA++AT+II+LAI MAKFGIIALVAKGYGTLAWVFF ILFIPL+T+GV RI
Sbjct: 306 KGISFTRRQEAVIATIIIILAIAMAKFGIIALVAKGYGTLAWVFFAILFIPLITVGVARI 365

Query: 372 LNPNWMKEFWEKA 384
           LNPNWMKEFWE+A
Sbjct: 366 LNPNWMKEFWERA 378


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.145    0.448 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137224531
Number of Sequences: 2977
Number of extensions: 5476597
Number of successful extensions: 19618
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19615
Number of HSP's gapped (non-prelim): 2
length of query: 384
length of database: 189,106,746
effective HSP length: 50
effective length of query: 334
effective length of database: 159,182,396
effective search space: 53166920264
effective search space used: 53166920264
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 166 (69.1 bits)