BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0089 (PAB0089) DE:Hypothetical protein
(133 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75202 hypothetical protein PAB0089 - Pyrococcus abyssi (st... 263 5e-70
pir||D69847 hypothetical protein yjcL - Bacillus subtilis >gi|26... 85 4e-16
dbj|BAB08723.1| (AB009056) contains similarity to unknown protei... 79 2e-14
dbj|BAA98072.1| (AB025606) contains similarity to unknown protei... 78 6e-14
dbj|BAA85420.1| (AP000616) similar to Bacillus subtilis genome; ... 75 4e-13
dbj|BAA90637.1| (AP001129) Similar to Bacillus subtilis complete... 75 4e-13
>pir||A75202 hypothetical protein PAB0089 - Pyrococcus abyssi (strain Orsay)
>gi|5457573|emb|CAB49064.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 133
Score = 263 bits (666), Expect = 5e-70
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MIIANKTKASELVGNEEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALWVFVTIYVSVII 60
MIIANKTKASELVGNEEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALWVFVTIYVSVII
Sbjct: 1 MIIANKTKASELVGNEEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALWVFVTIYVSVII 60
Query: 61 HYLVAGKLVKVDYQTLEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIGYAIGNYL 120
HYLVAGKLVKVDYQTLEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIGYAIGNYL
Sbjct: 61 HYLVAGKLVKVDYQTLEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIGYAIGNYL 120
Query: 121 GITGAYIVYKFLG 133
GITGAYIVYKFLG
Sbjct: 121 GITGAYIVYKFLG 133
>pir||D69847 hypothetical protein yjcL - Bacillus subtilis
>gi|2633544|emb|CAB13047.1| (Z99110) yjcL [Bacillus
subtilis]
Length = 396
Score = 84.7 bits (206), Expect = 4e-16
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 12 LVGNEEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALWVFVTIYVSVIIHYLVAGKLVKV 71
L G++E+ +L+++FF IG A + I+ P + L+VF+ I +S + L AGKL +V
Sbjct: 277 LNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFI-IAISNLAVSLAAGKLFRV 335
Query: 72 DYQTLEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIGYAIGNYLG 121
+ + + A +GGPTTA A+A+A W L ++ G +GY IGNY+G
Sbjct: 336 RLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVG 385
>dbj|BAB08723.1| (AB009056) contains similarity to unknown
protein~dbj|BAA90637.1~gene_id:MZF18.12 [Arabidopsis
thaliana]
Length = 443
Score = 78.8 bits (191), Expect = 2e-14
Identities = 42/117 (35%), Positives = 66/117 (55%), Gaps = 1/117 (0%)
Query: 16 EEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALWVFVTIYVSVIIHYLVAGKLVKVDYQT 75
E +++ L+ +FFT +GA + +I P + L+ + + V + + LV GKL +D +
Sbjct: 328 ETISLILMQVFFTILGATGSVWNVINTAPSIFLFAAIQVMVHLAVT-LVLGKLFCIDMKL 386
Query: 76 LEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIGYAIGNYLGITGAYIVYKFL 132
L + + A IGGPTTA A+A A W L V I++G+ G +I +LGI V K L
Sbjct: 387 LLLASNANIGGPTTACAMATAKGWTSLVVPGILSGVFGVSIATFLGIGCGVFVLKRL 443
>dbj|BAA98072.1| (AB025606) contains similarity to unknown
protein~dbj|BAA90637.1~gene_id:F6N7.1 [Arabidopsis
thaliana]
Length = 461
Score = 77.6 bits (188), Expect = 6e-14
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 16 EEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALWVFVTIYVSVIIHYLVAGKLVKVDYQT 75
E +A+ L+ +FFT +GA I ++I P + L+ V I + + L GKL+ ++ +
Sbjct: 346 EAMALILMQVFFTVVGASGNIWSVINTAPSIFLFALVQIGTHLAV-ILGIGKLLNIELRL 404
Query: 76 LEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIGYAIGNYLGITGAYIVYKFL 132
L + + A +GGPTTA +A A W L V I+ G+ G AI ++GI V KF+
Sbjct: 405 LLLASNANVGGPTTAAGMATAKGWNSLIVPGILAGIFGIAIATFIGIAFGVKVLKFM 461
>dbj|BAA85420.1| (AP000616) similar to Bacillus subtilis genome; unknown protein
(Z99110) [Oryza sativa]
Length = 233
Score = 74.9 bits (181), Expect = 4e-13
Identities = 46/141 (32%), Positives = 77/141 (53%), Gaps = 11/141 (7%)
Query: 1 MIIANKTKASELVGN-----EEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALW--VFVT 53
+++A T L+G E +A+ L+ +FFT +GA + + P V + V VT
Sbjct: 95 LVVALATAFPRLLGKLAPSGETIALILMQVFFTVVGANGNLVDAVTKAPSVFAFALVQVT 154
Query: 54 IYVSVIIHYLVAGKLVKVDYQTLEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIG 113
I++ ++ L AGKL+ + + L I + A +GGPTTA A+A A W L V I+ G+ G
Sbjct: 155 IHLGIV---LAAGKLMGFERKPLLIASNANVGGPTTAAAMATAKGWSSLIVPGILVGMFG 211
Query: 114 YAIGNYLGI-TGAYIVYKFLG 133
+I ++GI G +++ + G
Sbjct: 212 ISIATFVGIGFGMFVLRRICG 232
>dbj|BAA90637.1| (AP001129) Similar to Bacillus subtilis complete genome (section 7
of 21), from 1194391 to 1411140, yjcL. (Z99110) [Oryza
sativa]
Length = 425
Score = 74.9 bits (181), Expect = 4e-13
Identities = 46/141 (32%), Positives = 77/141 (53%), Gaps = 11/141 (7%)
Query: 1 MIIANKTKASELVGN-----EEVAMYLLHMFFTAIGAIAYIPTIIRAGPYVALW--VFVT 53
+++A T L+G E +A+ L+ +FFT +GA + + P V + V VT
Sbjct: 287 LVVALATAFPRLLGKLAPSGETIALILMQVFFTVVGANGNLVDAVTKAPSVFAFALVQVT 346
Query: 54 IYVSVIIHYLVAGKLVKVDYQTLEITAQAAIGGPTTALALALALDWPGLAVTAIITGLIG 113
I++ ++ L AGKL+ + + L I + A +GGPTTA A+A A W L V I+ G+ G
Sbjct: 347 IHLGIV---LAAGKLMGFERKPLLIASNANVGGPTTAAAMATAKGWSSLIVPGILVGMFG 403
Query: 114 YAIGNYLGI-TGAYIVYKFLG 133
+I ++GI G +++ + G
Sbjct: 404 ISIATFVGIGFGMFVLRRICG 424
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.143 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44050654
Number of Sequences: 2977
Number of extensions: 1543784
Number of successful extensions: 6184
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6178
Number of HSP's gapped (non-prelim): 6
length of query: 133
length of database: 189,106,746
effective HSP length: 50
effective length of query: 83
effective length of database: 159,182,396
effective search space: 13212138868
effective search space used: 13212138868
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)