BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0090 (ndaD) DE:D-AMINOACYLASE (aspartate, glutamate etc...)
         (526 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75202 d-aminoacylase (aspartate, glutamate etc) PAB0090 - ...  1068  0.0
sp|P72349|NDAD_ALCXX D-AMINOACYLASE (N-ACYL-D-AMINO-ACID DEACYLA...   356  3e-97
prf||2116330A N-acyl-D-Glu amidohydrolase [Achromobacter xylosox...   320  2e-86
sp|P94211|NDED_ALCXX N-ACYL-D-GLUTAMATE DEACYLASE (N-ACYL-D-GLUT...   320  3e-86
sp|P94212|NDDD_ALCXX N-ACYL-D-ASPARTATE DEACYLASE (N-ACYL-D-ASPA...   317  2e-85
sp|Q10830|YT13_MYCTU HYPOTHETICAL 67.2 KDA PROTEIN RV2913C >gi|7...   116  4e-25

>pir||B75202 d-aminoacylase (aspartate, glutamate etc) PAB0090 - Pyrococcus
           abyssi (strain Orsay) >gi|5457574|emb|CAB49065.1|
           (AJ248283) D-AMINOACYLASE (aspartate, glutamate etc)
           [Pyrococcus abyssi]
           Length = 526
           
 Score = 1068 bits (2731), Expect = 0.0
 Identities = 526/526 (100%), Positives = 526/526 (100%)

Query: 1   MVEYDIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKEDGQVTIDASNLIVAPGFID 60
           MVEYDIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKEDGQVTIDASNLIVAPGFID
Sbjct: 1   MVEYDIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKEDGQVTIDASNLIVAPGFID 60

Query: 61  MHAHDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFK 120
           MHAHDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFK
Sbjct: 61  MHAHDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFK 120

Query: 121 WRSYGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEE 180
           WRSYGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEE
Sbjct: 121 WRSYGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEE 180

Query: 181 GAFGMSSGLIYPPGVYSKTWELIELAMVVAKYGGIYSTHMRDEGNRVIEALEEAIRIGRE 240
           GAFGMSSGLIYPPGVYSKTWELIELAMVVAKYGGIYSTHMRDEGNRVIEALEEAIRIGRE
Sbjct: 181 GAFGMSSGLIYPPGVYSKTWELIELAMVVAKYGGIYSTHMRDEGNRVIEALEEAIRIGRE 240

Query: 241 SGVRVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWV 300
           SGVRVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWV
Sbjct: 241 SGVRVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWV 300

Query: 301 HESGKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEI 360
           HESGKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEI
Sbjct: 301 HESGKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEI 360

Query: 361 SDLLHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHP 420
           SDLLHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHP
Sbjct: 361 SDLLHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHP 420

Query: 421 RAYGTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHR 480
           RAYGTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHR
Sbjct: 421 RAYGTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHR 480

Query: 481 VKDRATYTNPRLPPDGIKYVIVNGVLSVENGELTGDAGGVVIRRTS 526
           VKDRATYTNPRLPPDGIKYVIVNGVLSVENGELTGDAGGVVIRRTS
Sbjct: 481 VKDRATYTNPRLPPDGIKYVIVNGVLSVENGELTGDAGGVVIRRTS 526


>sp|P72349|NDAD_ALCXX D-AMINOACYLASE (N-ACYL-D-AMINO-ACID DEACYLASE)
           >gi|2144161|pir||JC4394 aminoacylase (EC 3.5.1.14) -
           Alcaligenes xylosoxydans subsp. xylosoxydans A-6
           >gi|1488357|gb|AAB35881.1| (S80683) D-aminoacylase,
           N-acyl-D-amino acid amidohydrolase=3.5.1.14 [Alcaligenes
           xylosoxydans, ssp. xylosoxydans, A-6, Peptide, 484 aa]
           [Achromobacter xylosoxidans subsp. xylosoxidans]
           >gi|1881397|dbj|BAA08349.1| (D45918) N-acyl-D-amino acid
           amidohydrolase [Achromobacter xylosoxidans subsp.
           xylosoxidans]
           Length = 484
           
 Score =  356 bits (904), Expect = 3e-97
 Identities = 210/524 (40%), Positives = 295/524 (56%), Gaps = 50/524 (9%)

Query: 4   YDIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKEDGQVT-IDASNLIVAPGFIDMH 62
           +D+++  G ++DG+  P  R D+G++  +I  IG + +    T +D S L+VAPGFID H
Sbjct: 9   FDLLLAGGTLIDGSNTPGRRADLGVRGDRIAAIGDLSDAAAHTRVDVSGLVVAPGFIDSH 68

Query: 63  AHDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFKWR 122
            HDD    + R    K+ QGVTTVV+GNCGIS+AP+         + + +L +   +++ 
Sbjct: 69  THDDNYLLRRRDMTPKISQGVTTVVTGNCGISLAPLAHANPP---APLDLLDEGGSYRFE 125

Query: 123 SYGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEEGA 182
            + ++LDAL    P   N   +VGH TLR AVM    R  T+EE+  M++L  ++M  GA
Sbjct: 126 RFADYLDALRAT-PAAVNAACMVGHSTLRAAVMPDLQRAATDEEIAAMRDLAEEAMASGA 184

Query: 183 FGMSSGLIYPPGVYSKTWELIELAMVVAKYGGIYSTHMRDEGNRVIEALEEAIRIGRESG 242
            G+S+G  YPP   + T E+IE+   ++ +GGIY+THMRDEG  ++ ALEE  RIGRE  
Sbjct: 185 IGISTGAFYPPAARATTEEIIEVCRPLSAHGGIYATHMRDEGEHIVAALEETFRIGRELD 244

Query: 243 VRVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWVHE 302
           V V +SHHKV G+ N+G+SR+TL LIE A     +++LD YPY AGST L          
Sbjct: 245 VPVVISHHKVMGQPNFGRSRETLPLIEAAMARQ-DVSLDAYPYVAGSTMLK--------- 294

Query: 303 SGKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEISD 362
                                      Q+ +  AG    IIT  + FPE  G+ L E++ 
Sbjct: 295 ---------------------------QDRVLLAG--RTIITWCKPFPELSGRDLDEVAA 325

Query: 363 LLHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHPRA 422
              +  +DV+ ++       AG I F+M E DV+RIL+   +MIG+DGL   E  PHPR 
Sbjct: 326 ERGKSKYDVVPEL-----QPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDE-RPHPRL 379

Query: 423 YGTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHRVK 482
           +GTFPRVLG Y R+  L  LE A+ KMT L A + GL  RG ++ G +ADLV+FDP  V 
Sbjct: 380 WGTFPRVLGHYARDLGLFPLETAVWKMTGLTAARFGLAGRGQLQAGYFADLVVFDPATVA 439

Query: 483 DRATYTNPRLPPDGIKYVIVNGVLSVENGELTGDAGGVVIRRTS 526
           D AT+ +P     GI  V VNG    +    TG   G V+ RT+
Sbjct: 440 DTATFEHPTERAAGIHSVYVNGAPVWQEQAFTGQHAGRVLARTA 483


>prf||2116330A N-acyl-D-Glu amidohydrolase [Achromobacter xylosoxidans subsp.
           xylosoxidans]
           Length = 488
           
 Score =  320 bits (812), Expect = 2e-86
 Identities = 201/501 (40%), Positives = 270/501 (53%), Gaps = 50/501 (9%)

Query: 5   DIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKE-DGQVTIDASNLIVAPGFIDMHA 63
           D+VI+ G ++DG G P  R D+GI+  +I  IG +        +DA   IVAPGFID H 
Sbjct: 6   DLVIEGGWVIDGLGGPRRRADVGIRGERIAAIGDLSAAPADRRLDAGGRIVAPGFIDTHG 65

Query: 64  HDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFKWRS 123
           HDDL+F +      K  QG+T+VV GNCGIS AP    +     + + +LG    F    
Sbjct: 66  HDDLMFVEKPGLEWKTSQGITSVVVGNCGISGAPA--PLPGNTAAALALLGDSPLFA--D 121

Query: 124 YGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEEGAF 183
              +  ALE   P+  N   LVGH  LR+A M   A  P+ +E   M+ +LA ++E GA 
Sbjct: 122 MAMYFGALEAARPM-INVAALVGHANLRLAAMRDPAAQPSAKEQRAMERMLADALEAGAV 180

Query: 184 GMSSGLIYPPGVYSKTWELIELAMVVAKYGGIYSTHMRDEGNRVIEALEEAIRIGRESGV 243
           G S+GL Y PG  ++  EL  LA V A  G ++++H+R+EG+ V  A++E + +GR +G 
Sbjct: 181 GFSTGLAYQPGGVAEQAELDGLARVAAARGALHTSHIRNEGDAVEAAVDEVLAVGRRTGC 240

Query: 244 RVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWVHES 303
              +SHHK     NWGKS  TLA I++AR  G+++ LD+YPY   ST L           
Sbjct: 241 ATVLSHHKCMMPANWGKSAATLANIDRARAAGVDVALDIYPYPGSSTIL----------- 289

Query: 304 GKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEISDL 363
                          I E  +  DD            I IT S   PE  G+SL EI+  
Sbjct: 290 ---------------IPERADQIDD------------IRITWSTPHPECGGQSLAEIAAR 322

Query: 364 LHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHPRAY 423
              D         A+    AG I F M E +V RI  H   M+G+DGL + +  PHPR +
Sbjct: 323 WACDGVTA-----ARRLCPAGAIYFAMDENEVRRIFQHECCMVGSDGLPN-DAHPHPRLW 376

Query: 424 GTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHRVKD 483
           G+F RVLGRYVRE +LL LE A+ KMT+LPA   GL DRG +  G WAD+V+FD   V D
Sbjct: 377 GSFTRVLGRYVREAELLTLEAAVAKMTALPARVFGLADRGRLAVGAWADVVVFDADTVCD 436

Query: 484 RATYTNPRLPPDGIKYVIVNG 504
           RAT+  P L   GI++V+VNG
Sbjct: 437 RATWDAPTLASAGIEHVLVNG 457


>sp|P94211|NDED_ALCXX N-ACYL-D-GLUTAMATE DEACYLASE (N-ACYL-D-GLUTAMATE AMIDOHYDROLASE)
           >gi|1363355|pir||JC4165 N-acyl-D-glutamate
           amidohydrolase (EC 3.5.1.-) - Alcaligenes xylosoxydans
           subsp. xylosoxydans A-6 >gi|1707291|dbj|BAA08778.1|
           (D50061) N-acyl-D-amino acids amidohydrolase
           [Achromobacter xylosoxidans subsp. xylosoxidans]
           Length = 488
           
 Score =  320 bits (811), Expect = 3e-86
 Identities = 201/501 (40%), Positives = 270/501 (53%), Gaps = 50/501 (9%)

Query: 5   DIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKE-DGQVTIDASNLIVAPGFIDMHA 63
           D+VI+ G ++DG G P  R D+GI+  +I  IG +        +DA   IVAPGFID H 
Sbjct: 6   DLVIEGGWVIDGLGGPRRRADVGIRGERIAAIGDLSAAPADRRLDAGGRIVAPGFIDTHG 65

Query: 64  HDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFKWRS 123
           HDDL+F +      K  QG+T+VV GNCGIS AP    +     + + +LG    F    
Sbjct: 66  HDDLMFVEKPGLEWKTSQGITSVVVGNCGISGAPA--PLPGNTAAALALLGDSPLFA--D 121

Query: 124 YGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEEGAF 183
              +  ALE   P+  N   LVGH  LR+A M   A  P+ +E   M+ +LA ++E GA 
Sbjct: 122 MAMYFGALEAQRPM-INVAALVGHANLRLAAMRDPAAQPSAKEQRAMERMLADALEAGAV 180

Query: 184 GMSSGLIYPPGVYSKTWELIELAMVVAKYGGIYSTHMRDEGNRVIEALEEAIRIGRESGV 243
           G S+GL Y PG  ++  EL  LA V A  G ++++H+R+EG+ V  A++E + +GR +G 
Sbjct: 181 GFSTGLAYQPGGVAEQAELDGLARVAAARGALHTSHIRNEGDAVEAAVDEVLAVGRRTGC 240

Query: 244 RVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWVHES 303
              +SHHK     NWGKS  TLA I++AR  G+++ LD+YPY   ST L           
Sbjct: 241 ATVLSHHKCMMPANWGKSAATLANIDRARAAGVDVALDIYPYPGSSTIL----------- 289

Query: 304 GKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEISDL 363
                          I E  +  DD            I IT S   PE  G+SL EI+  
Sbjct: 290 ---------------IPERADQIDD------------IRITWSTPHPECGGQSLAEIAAR 322

Query: 364 LHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHPRAY 423
              D         A+    AG I F M E +V RI  H   M+G+DGL + +  PHPR +
Sbjct: 323 WGCDAVTA-----ARRLCPAGAIYFAMDENEVRRIFQHECCMVGSDGLPN-DAHPHPRLW 376

Query: 424 GTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHRVKD 483
           G+F RVLGRYVRE +LL LE A+ KMT+LPA   GL DRG +  G WAD+V+FD   V D
Sbjct: 377 GSFTRVLGRYVREAELLTLEAAVAKMTALPARVFGLADRGRLAVGAWADVVVFDADTVCD 436

Query: 484 RATYTNPRLPPDGIKYVIVNG 504
           RAT+  P L   GI++V+VNG
Sbjct: 437 RATWDAPTLASAGIEHVLVNG 457


>sp|P94212|NDDD_ALCXX N-ACYL-D-ASPARTATE DEACYLASE (N-ACYL-D-ASPARTATE AMIDOHYDROLASE)
           >gi|1800111|dbj|BAA08350.1| (D45919) N-acyl-D-amino acid
           amidohydrolase [Achromobacter xylosoxidans subsp.
           xylosoxidans]
           Length = 498
           
 Score =  317 bits (804), Expect = 2e-85
 Identities = 198/513 (38%), Positives = 280/513 (53%), Gaps = 52/513 (10%)

Query: 5   DIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKIGKIKE-DGQVTIDASNLIVAPGFIDMHA 63
           D +I    ++DG G P  + D+ ++ G+IV +G      G   IDA  L +APGFID H 
Sbjct: 15  DFIIAGATLIDGGGGPARQGDLAVRGGRIVALGDFAHAPGVPVIDARGLALAPGFIDSHT 74

Query: 64  HDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVEFKWRS 123
           HDD           K+ QG+TTVV+GNCGIS+AP++   +      + +LG    F++ +
Sbjct: 75  HDDGYLLAHPEMLPKVSQGITTVVTGNCGISLAPLSRRQIP---QPLDLLGPPELFRFAT 131

Query: 124 YGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGMEARDPTEEELGRMKELLAKSMEEGAF 183
           + ++L AL E  P   N + LVGH TLR+AVM    R  T+ E   M+ LL ++++ GAF
Sbjct: 132 FRDWLRALAET-PAAVNVIPLVGHTTLRVAVMDDTGRAATDAERAAMRALLDEALQAGAF 190

Query: 184 GMSSGLIYPPGVYSKTWELIELAMVV-AKYGGIYSTHMRDEGNRVIEALEEAIRIGRESG 242
           G+S+G  YPP   + T E+I++   +  + G IY+TH+RDE + ++ A+EEA+ IGRE  
Sbjct: 191 GVSTGTFYPPASAAPTDEIIDVCQPLRGRAGAIYATHLRDEADHIVPAMEEALLIGRELD 250

Query: 243 VRVEVSHHKVSGRKNWGKSRKTLALIEKARNEGIEITLDVYPYTAGSTYLAALLPPWVHE 302
            RV  SHHK++G +N G+SR+TL +I +A      + LD +PY A ST L          
Sbjct: 251 CRVVFSHHKLAGERNHGRSRETLDMISRAAATQ-RVCLDCHPYPATSTML---------- 299

Query: 303 SGKIKERCRDEETRKKIREFIETRDDWQNFIKEAGWENIIITHSENFPEFVGKSLKEISD 362
                   R +  R   R                     +IT S+ +PE  G+   E+  
Sbjct: 300 --------RLDRARLASR--------------------TLITWSKGYPEATGRDFSEVMA 331

Query: 363 LLHRDPFDVLFDILAKDGTNAGMIVFLMSEEDVERILSHPYSMIGTDGLDSGEGLPHPRA 422
            L  D    +  +       AG I FLM + DV RI SHP + +G+DGL   +  PHPR 
Sbjct: 332 ELGLDDEAAIARL-----APAGAIYFLMDQADVNRIFSHPLTTVGSDGLPF-DPHPHPRQ 385

Query: 423 YGTFPRVLGRYVREKKLLRLEDAIRKMTSLPALKLGLKDRGLVKEGMWADLVIFDPHRVK 482
           +GTF  VL   VRE++LL LE AI KMT L A + GL +RGL+++G  ADLV+FDP  V 
Sbjct: 386 WGTFTNVLRTMVREQRLLSLETAIHKMTGLAAAQYGLTERGLLRQGYHADLVLFDPANVT 445

Query: 483 DRATYTNPRLPPDGIKYVIVNGVLSVENGELTG 515
           D AT++ P     GI  V VNG   V +GE TG
Sbjct: 446 DTATFSAPIQVSQGIHAVWVNG-RQVWDGERTG 477


>sp|Q10830|YT13_MYCTU HYPOTHETICAL 67.2 KDA PROTEIN RV2913C >gi|7477422|pir||D70928
           hypothetical protein Rv2913c - Mycobacterium
           tuberculosis  (strain H37RV) >gi|3250707|emb|CAA98380.1|
           (Z74024) hypothetical protein Rv2913c [Mycobacterium
           tuberculosis]
           Length = 611
           
 Score =  116 bits (289), Expect = 4e-25
 Identities = 75/200 (37%), Positives = 108/200 (53%), Gaps = 16/200 (8%)

Query: 2   VEYDIVIKNGKIVDGTGNPWFRTDIGIKDGKIVKI--GKIKEDG-QVTIDASNLIVAPGF 58
           V YD++I++G   DGTGN      +GI+DG +  +  G + E G    +DA+   V PGF
Sbjct: 14  VTYDVIIRDGLWFDGTGNAPLTRTLGIRDGVVATVAAGALDETGCPEVVDAAGKWVVPGF 73

Query: 59  IDMHAHDDLIFFKDRFNRAKLLQGVTTVVSGNCGISVAPVNEEMLDVLKSYVGILGKEVE 118
           ID+H H D     D   R  +  GVTTV+ GNC +S    N E    L S V  + +E  
Sbjct: 74  IDVHTHYDAEVLLDPGLRESVRHGVTTVLLGNCSLSTVYANSEDAADLFSRVEAVPREFV 133

Query: 119 F-------KWRSYGEFLDALEEVGPLGTNFVGLVGHGTLRIAVMGME-ARD----PTEEE 166
                    W +  E+++A++ + PLG N   L+GH  LR AV+G++ A D    PTE E
Sbjct: 134 LGALRDNQTWSTPAEYIEAIDAL-PLGPNVSSLLGHSDLRTAVLGLDRATDDTVRPTEAE 192

Query: 167 LGRMKELLAKSMEEGAFGMS 186
           L +M +LL +++E G  GMS
Sbjct: 193 LAKMAKLLDEALEAGMLGMS 212


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209648975
Number of Sequences: 2977
Number of extensions: 9491773
Number of successful extensions: 21711
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21679
Number of HSP's gapped (non-prelim): 11
length of query: 526
length of database: 189,106,746
effective HSP length: 55
effective length of query: 471
effective length of database: 156,189,961
effective search space: 73565471631
effective search space used: 73565471631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)