BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0091 (dppA-1) DE:dipeptide ABC transporter,
dipeptide-binding protein
(556 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75202 dipeptide abc transporter, dipeptide-binding protein... 1137 0.0
pir||B71130 probable oligopeptide binding protein APPA - Pyrococ... 204 3e-51
dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-... 203 6e-51
dbj|BAB06473.1| (AP001516) oligopeptide ABC transporter (oligope... 197 3e-49
dbj|BAB06745.1| (AP001517) oligopeptide ABC transpoter (oligopep... 195 1e-48
dbj|BAB03750.1| (AP001507) oligopeptide ABC transporter (oligope... 190 3e-47
sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRE... 186 5e-46
pir||T44635 dipeptide transporter protein dppA [imported] - Baci... 185 8e-46
pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycy... 184 2e-45
pir||B83082 probable binding protein component of ABC transporte... 184 2e-45
pir||C70425 transporter (extracellular solute binding protein fa... 183 3e-45
pdb|1DPE| Dipeptide-Binding Protein 182 1e-44
dbj|BAB04735.1| (AP001510) oligopeptide ABC transporter (oligope... 181 2e-44
pir||H83083 probable binding protein component of ABC transporte... 181 2e-44
dbj|BAA75392.1| (AB013376) AppA [Bacillus halodurans] 176 7e-43
pir||A43832 heme-binding protein A precursor - Haemophilus influ... 175 1e-42
pir||D64098 heme-binding protein A precursor - Haemophilus influ... 174 2e-42
sp|P33950|HBPA_HAEIN HEME-BINDING PROTEIN A PRECURSOR (HEMIN-BIN... 174 3e-42
sp|P75797|YLIB_ECOLI PUTATIVE BINDING PROTEIN YLIB PRECURSOR >gi... 171 2e-41
dbj|BAA35525.1| (D90721) Heme-binding protein a precursor (hemin... 171 2e-41
pir||F71951 periplasmic dipeptide transport substrate-binding pr... 169 9e-41
pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-bin... 166 8e-40
gi|10955080 agaA [Agrobacterium tumefaciens] >gi|11277227|pir||T... 162 1e-38
pir||F81253 probable peptide ABC-transport system periplasmic pe... 160 5e-38
pir||B82242 oligopeptide ABC transporter, periplasmic oligopepti... 159 8e-38
sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR... 157 3e-37
pir||G83083 probable binding protein component of ABC transporte... 156 7e-37
pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fra... 156 7e-37
pir||B72289 oligopeptide ABC transporter, periplasmic oligopepti... 152 8e-36
dbj|BAB04066.1| (AP001508) oligopeptide ABC transporter (oligope... 152 1e-35
pir||C83084 probable binding protein component of ABC transporte... 150 4e-35
pir||E72451 probable transport system binding protein APE2257 - ... 150 5e-35
gb|AAB34223.1| (S75873) 60 kda antigen [Borrelia coriaceae] 149 7e-35
dbj|BAA15142.1| (D90789) Periplasmic dipeptide transport protein... 145 1e-33
sp|P76128|YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS PRECURSOR >gi... 145 1e-33
pir||G70140 oligopeptide ABC transporter, periplasmic oligopepti... 145 2e-33
gb|AAC34990.1| (AF043071) oligopeptide permease periplasmic bind... 144 3e-33
gb|AAB97671.1| (AF005657) plasminogen binding protein [Borrelia ... 143 5e-33
gb|AAC46282.1| (AF000366) oligopeptide permease homolog AI [Borr... 143 5e-33
dbj|BAA94699.1| (AB026907) dipeptide transporter DppA homolog [O... 142 9e-33
pir||A82356 peptide ABC transporter, periplasmic peptide-binding... 141 3e-32
sp|P33590|NIKA_ECOLI NICKEL-BINDING PERIPLASMIC PROTEIN PRECURSO... 139 6e-32
pir||T35938 probable substrate binding protein - Streptomyces co... 139 6e-32
dbj|BAB04286.1| (AP001509) nickel transport system (nickel-bindi... 137 4e-31
pir||G82981 probable binding protein component of ABC dipeptide ... 135 1e-30
emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis] 133 6e-30
pir||B75364 extracellular solute-binding protein, family 5 - Dei... 132 7e-30
sp|P06109|XP55_STRLI XP55 PROTEIN PRECURSOR >gi|80816|pir||S0738... 132 7e-30
pir||G69618 dipeptide ABC transporter (dipeptide-binding protein... 131 2e-29
sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR 130 5e-29
pir||S16651 dciAE protein - Bacillus subtilis 129 6e-29
dbj|BAB07355.1| (AP001519) oligopeptide ABC transporter (oligope... 127 3e-28
pir||G72720 probable oligopeptide-binding protein oppA APE0304 -... 127 4e-28
pir||A48650 agrocinopine utilization periplasmic binding protein... 126 7e-28
pir||A72367 oligopeptide ABC transporter, periplasmic oligopepti... 125 2e-27
gb|AAG20588.1| (AE005129) dipeptide ABC transporter ATP-binding;... 124 2e-27
gi|10954940 Probable accA [Agrobacterium tumefaciens] >gi|649829... 124 3e-27
sp|P06202|OPPA_SALTY PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 123 5e-27
pir||H75413 extracellular solute-binding protein, family 5 - Dei... 123 5e-27
pir||G75577 extracellular solute-binding protein, family 5 - Dei... 123 5e-27
emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii] 123 5e-27
dbj|BAB13784.1| (AB038238) NikA [Vibrio parahaemolyticus] 123 5e-27
emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii] 122 1e-26
sp|Q46863|YGIS_ECOLI PUTATIVE BINDING PROTEIN YGIS PRECURSOR >gi... 121 2e-26
sp|P23843|OPPA_ECOLI PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 120 3e-26
sp|P71370|OPPA_HAEIN PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 119 9e-26
pir||H75141 oligopeptide-binding protein appa precursor PAB0627 ... 118 2e-25
pir||S74819 extracellular solute-binding protein - Synechocystis... 117 4e-25
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complex... 116 5e-25
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein C... 116 5e-25
sp|P24141|OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR... 116 6e-25
pir||E72282 oligopeptide ABC transporter, periplasmic oligopepti... 115 1e-24
pir||A38447 oligopeptide ABC transport system substrate-binding ... 115 1e-24
pir||B75332 extracellular solute-binding protein, family 5 - Dei... 115 1e-24
pir||A70141 oligopeptide ABC transporter, periplasmic oligopepti... 115 1e-24
pir||E72215 oligopeptide ABC transporter, periplasmic oligopepti... 115 1e-24
gi|10955093 moaA [Agrobacterium tumefaciens] >gi|11277228|pir||T... 115 2e-24
pir||H70140 oligopeptide ABC transporter, periplasmic oligopepti... 115 2e-24
gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic bind... 115 2e-24
gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Bo... 114 2e-24
pir||A36263 polyamine-induced protein precursor - Escherichia co... 113 4e-24
emb|CAC16443.1| (AL450165) putative ABC transporter solute bindi... 113 4e-24
dbj|BAB05793.1| (AP001514) oligopeptide ABC transporter (oligope... 112 9e-24
gb|AAC46283.1| (AF000366) oligopeptide permease homolog AII [Bor... 112 1e-23
gi|11499356 dipeptide ABC transporter, dipeptide-binding protein... 111 2e-23
emb|CAA10909.1| (AJ222649) sapA [Erwinia chrysanthemi] 111 3e-23
pir||E72059 peptide ABC transporter, periplasmic peptide-binding... 109 8e-23
pir||S77182 oligopeptide transport system permease protein appA ... 109 1e-22
gb|AAC18096.1| (AF058302) FrnA [Streptomyces roseofulvus] 107 3e-22
pir||B82170 peptide ABC transporter, periplasmic peptide-binding... 107 4e-22
sp|P36634|SAPA_SALTY PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 105 1e-21
gi|10956456 pXO2-66 [Bacillus anthracis] >gi|6470217|gb|AAF13671... 105 1e-21
pir||H82301 peptide ABC transporter, periplasmic peptide-binding... 105 1e-21
pir||D64882 periplasmic oligopeptide-binding protein precursor -... 104 3e-21
sp|P77348|MPPA_ECOLI PERIPLASMIC MUREIN PEPTIDE-BINDING PROTEIN ... 104 3e-21
pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii ... 104 3e-21
dbj|BAA14855.1| (D90767) Peptide transport periplasmic protein S... 104 4e-21
sp|P55669|Y4TO_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERIPLASMI... 103 6e-21
gi|11497010 oligopeptide ABC transporter, periplasmic oligopepti... 102 1e-20
pir||C75118 dipeptide abc transporter, dipeptide-binding protein... 102 1e-20
dbj|BAA97043.1| (AB015765) SapA [Vibrio alginolyticus] 101 2e-20
sp|Q47622|SAPA_ECOLI PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 100 4e-20
emb|CAB01955.1| (Z79692) ORF23 [Sinorhizobium meliloti] 100 4e-20
pir||T34583 probable periplasmic oligopeptide binding protein - ... 99 1e-19
pir||A75069 dipeptide transport protein precursor (dip eptide-bi... 99 2e-19
pir||H81668 peptide ABC transporter, periplasmic peptide-binding... 98 3e-19
pir||E71510 probable oligopeptide binding lipoprotein - Chlamydi... 98 3e-19
emb|CAA20251.1| (AL031231) putative peptide transport system sec... 98 3e-19
gb|AAC67217.1| (U78968) surface lipoprotein DppA [Streptococcus ... 97 5e-19
gi|10954707 hypothetical ABC-transporter gene~similar to PH0807 ... 97 6e-19
gb|AAG22034.1|AF305387_1 (AF305387) OppA [Bacillus thuringiensis] 97 6e-19
dbj|BAB05515.1| (AP001513) nickel ABC transporter (nickel-bindin... 96 1e-18
pir||S28153 hyaluronate synthase precursor - Streptococcus "equi... 94 3e-18
pir||E82377 ABC transporter, periplasmic substrate-binding prote... 92 2e-17
gb|AAF73090.1|AF103793_1 (AF103793) peptide binding protein OppA... 91 3e-17
gb|AAD17886.1| (AF100456) hyaluronate-associated protein precurs... 90 8e-17
emb|CAC12450.1| (AL445067) dipeptide ABC transport system, perip... 87 5e-16
gb|AAF86623.1| (U87786) Orf7 [Streptomyces clavuligerus] 85 3e-15
pir||S57672 hypothetical protein 5 - Streptomyces clavuligerus ... 82 2e-14
pir||B72107 peptide ABC transporter, periplasmic peptide-binding... 80 7e-14
pir||D72107 oligopeptide binding protein - Chlamydophila pneumon... 77 4e-13
pir||A81564 peptide ABC transporter, periplasmic peptide-binding... 77 4e-13
dbj|BAA06007.1| (D28859) TraC [Enterococcus faecalis] 76 7e-13
dbj|BAA11195.1| (D78016) TRAC [Enterococcus faecalis] 75 2e-12
gb|AAF22874.1| (AF065159) putative ABC transporter [Bradyrhizobi... 75 2e-12
gb|AAG09257.1| (AF176664) EppA precursor [EDTA-degrading bacteri... 75 3e-12
pir||A72107 peptide ABC transporter, periplasmic peptide-binding... 73 6e-12
emb|CAB61245.1| (AJ238087) lipoprotein [Lactococcus lactis] 72 1e-11
emb|CAC17494.1| (AL450432) putative secreted solute-binding prot... 72 1e-11
>pir||C75202 dipeptide abc transporter, dipeptide-binding protein PAB0091 -
Pyrococcus abyssi (strain Orsay)
>gi|5457575|emb|CAB49066.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 556
Score = 1137 bits (2910), Expect = 0.0
Identities = 556/556 (100%), Positives = 556/556 (100%)
Query: 1 MRQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTR 60
MRQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTR
Sbjct: 1 MRQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTR 60
Query: 61 DPDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRD 120
DPDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRD
Sbjct: 61 DPDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRD 120
Query: 121 ALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPF 180
ALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPF
Sbjct: 121 ALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPF 180
Query: 181 LATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDP 240
LATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDP
Sbjct: 181 LATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDP 240
Query: 241 ALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALE 300
ALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALE
Sbjct: 241 ALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALE 300
Query: 301 YVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM 360
YVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM
Sbjct: 301 YVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM 360
Query: 361 EEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQI 420
EEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQI
Sbjct: 361 EEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQI 420
Query: 421 IQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMF 480
IQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMF
Sbjct: 421 IQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMF 480
Query: 481 FYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIV 540
FYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIV
Sbjct: 481 FYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIV 540
Query: 541 INPYTLDVYLDDAKLK 556
INPYTLDVYLDDAKLK
Sbjct: 541 INPYTLDVYLDDAKLK 556
>pir||B71130 probable oligopeptide binding protein APPA - Pyrococcus horikoshii
>gi|3257217|dbj|BAA29900.1| (AP000003) 597aa long
hypothetical oligopeptide binding protein APPA
[Pyrococcus horikoshii]
Length = 597
Score = 204 bits (513), Expect = 3e-51
Identities = 152/486 (31%), Positives = 235/486 (48%), Gaps = 42/486 (8%)
Query: 54 LVIGYTRDPDTLDPQKSTWVDITTGL---VFATLINMGTNGKIIPGLAESWEISEDGKVI 110
L++ Y DP + +P D G+ +F L+ + + +IP LA WEIS+DGKV
Sbjct: 41 LIVLYWGDPKSFNPDAQV-DDAGYGIANQIFCKLVTLDRDYNVIPDLAYKWEISDDGKVY 99
Query: 111 TFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIY 170
TF+L G P+TAEDVK+ F+ + + + + +++++V+D+YTV+
Sbjct: 100 TFYLNPNATWHDGVPVTAEDVKWTFEAIKKYKGIA-YGIIHADNIEKIEVVDNYTVRFYL 158
Query: 171 KEPYGPALPFLATMPPLGIFSKEFYEKVG-----PVQFGQTPAGTGPYYVVKWVRGAYIE 225
KEP+ P L FLA I K YEK + P G GP+ V+WV+G +I
Sbjct: 159 KEPFAPFLSFLAWYGTF-ILPKHIYEKYSDWLDPKNPYLNKPIGCGPFKFVEWVKGDHIT 217
Query: 226 YKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYK 285
N + R G P I+ I ++II + + F AG VL PP
Sbjct: 218 LVANENYFR-----------GRPGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPP---- 262
Query: 286 DLANDPNVEMIPALEYVLH------YIGFNCQKYPFNDTRVRQAINMAINREEIIKYALE 339
L P ++ P + + Y+GFN ++ D RVR AI AINR+E+++ A
Sbjct: 263 -LTEIPRLKSTPGVSVSIRPVPSRWYLGFNLKRPYLQDVRVRLAIAYAINRKELVEKAEN 321
Query: 340 GLAVPVHGPLVPSMNGYSEKMEEYAKQKYP-YDPEKAKQLLAEAGWVDRDGDGILEDKNG 398
GL P G VP++ K K P Y+PEKAKQLL EAG+ D +GDG E +G
Sbjct: 322 GLGYPAEGTYVPAI-----KWAYNPNAKLPEYNPEKAKQLLDEAGFKDINGDGFRETPDG 376
Query: 399 NKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRY 458
+ + TG + + +I+ QLAK+G+KVK+ + E +++ V K
Sbjct: 377 KPLELRLLYFTGS-DTNAICTLIKEQLAKVGLKVKLESYEIATWEQKVVKERDFDLALVD 435
Query: 459 GLQ--DAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDG 516
G Q D + F S + + + D+ L++ T D E+R++ +A++IL
Sbjct: 436 GFQGPDPANMEIRFKSTAYINFAGYNNTEFDKLLEEAAKTTDTEKRKELYWKAQEILAKD 495
Query: 517 APMVPL 522
P +PL
Sbjct: 496 LPYLPL 501
>dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus halodurans]
Length = 557
Score = 203 bits (510), Expect = 6e-51
Identities = 151/509 (29%), Positives = 248/509 (48%), Gaps = 65/509 (12%)
Query: 77 TGLVFATLINMGTNG-KIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVF 135
T +F TLI + +I PGLA SW++SEDG TF+L +G+ G P AE VK F
Sbjct: 82 TKQIFETLIEFERDSFEIGPGLAHSWDMSEDGLRYTFYLEEGVTFHDGTPFNAEAVKVNF 141
Query: 136 DRLMNPETRSPMAPLVLG-------------------PLKEVKVIDDYTVQLIYKEPYGP 176
+R +P+ P A + G ++E+ V+++Y ++ + EP G
Sbjct: 142 ERWADPD--HPYAFVDEGYNYSVYGTQFGGFKGDPGHVIEEINVVNEYEIEFVLSEPLGS 199
Query: 177 ALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRN-PYWKRE 235
L + M + S +E+ G + P GTGP+ V W R I ++N YWK
Sbjct: 200 FLQNMG-MSYFAMSSPAAFEEYG-AAINENPVGTGPFKFVSWTRDDSIVLEKNEEYWKE- 256
Query: 236 YRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEM 295
G P ++ I F++I + ++ ++G I ++ + P+ + D ++ +
Sbjct: 257 ----------GLPKLDKIIFQVIPDNSARLTALRSGQIDIMDGLNPDDVAQVEGDDSIVL 306
Query: 296 IPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNG 355
+ Y+GF+ +K PF+D VRQAIN AI+++ +I GLA P P+ P G
Sbjct: 307 FERATNNIGYLGFHVEKEPFDDPLVRQAINHAIDKDSLITALYNGLAEPAKNPVPPGYLG 366
Query: 356 YSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMW---ISTGEL 412
Y+E ++ YA YDPE+A++LLAEAG+ D F E+W ++ +
Sbjct: 367 YNEAIDPYA-----YDPERARELLAEAGYED-------------GFEFELWTMPVARPYM 408
Query: 413 EAP-KVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQ---ILLY 468
P + A+ IQ+ A +GI KI T + +++ + KG H M++ + + L
Sbjct: 409 PDPQRAAEAIQSNFADVGITAKIETRDWATYLEETEKGAHDMFMLGWSGVNGDPDYFLSN 468
Query: 469 MFHSK--KGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARK 526
+ H G R F+ D++E L++ TVDP ER+ EA +++ + A MVPL
Sbjct: 469 LLHGDAIPGGNRSFYDEGDVNEILNQAKKTVDPNEREVLYFEALEMIHEDAVMVPLVHSI 528
Query: 527 VFLAYRKDVVEGIVINPYTLDVYLDDAKL 555
LA VV+ + +P T + LD+ +L
Sbjct: 529 PVLAGSSRVVD-YIPHPSTSET-LDEVQL 555
>dbj|BAB06473.1| (AP001516) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 534
Score = 197 bits (495), Expect = 3e-49
Identities = 175/574 (30%), Positives = 270/574 (46%), Gaps = 78/574 (13%)
Query: 10 LVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQK 69
L+ L AL+ A C P+ ++ + TG + ET L+ IG DP +LDP
Sbjct: 10 LLLILMTALLTA-CSNSAEPSSSKEEE-TGENLQETGGNLQ-----IGVMNDPVSLDPHG 62
Query: 70 STWVDITTGL---VFATLINMGTNGKIIPGLAES--------WEISEDGKVITFHLRKGI 118
+ +++ + ++ L+ + N +I PGLAES WE S +RK +
Sbjct: 63 AN-ENVSNSINSNMYDRLVYLDKNLEIAPGLAESLVQIGETTWEAS---------IRKDV 112
Query: 119 RDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPAL 178
+ G+ + AE VK FDR+ +PE SP+A + + EVKVIDDYTV + P+ P L
Sbjct: 113 QFHDGSQLNAEVVKANFDRIRDPEIGSPVA-FLFNMITEVKVIDDYTVHFETEFPFAP-L 170
Query: 179 PFLATMPPLGIFS----KEFYEKV--GPVQFGQT---PAGTGPYYVVKWVRGAYIEYKRN 229
P P I S + YE + G F T P GTG + G + R+
Sbjct: 171 PSHLAHPGGSIISMGSIEASYEALEKGEDAFTPTNERPIGTGYFKFEDRTPGQSVTLSRH 230
Query: 230 P-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLA 288
YW E ++T+ F++I E T ++E + G IH+ V P + +
Sbjct: 231 ENYWGDELAK-----------VDTVTFQVIPEDLTRIAELETGGIHLTYPVNPSDAERIE 279
Query: 289 NDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGP 348
N P+ + A + Y+GFN + PF+D +VRQAI+MAI+++ I+ + G+ + GP
Sbjct: 280 NGPDTYLEQANSTRMVYLGFNTEVEPFDDPKVRQAIHMAIDKDGILDGVVSGIGIRADGP 339
Query: 349 LVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIS 408
+ P + G+SE+++ K +D E AK LLAEAG+ D +L D
Sbjct: 340 IAPDVFGFSEQID-----KITFDREMAKDLLAEAGYPDGFPTTLLTD------------- 381
Query: 409 TGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYG--LQDAQIL 466
+ E +A++IQ QL++IGI V I E ++ + G +++L +G D
Sbjct: 382 -DDRERQDLAEMIQYQLSEIGIDVSIDMFEFGTYLERAGNGESELFLGSWGTVTMDGDYG 440
Query: 467 LY-MFH-SKKGV--KRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPL 522
LY +FH S KG R F +LD+ LD D EER + +A+ +L + +P L
Sbjct: 441 LYPVFHSSNKGSAGNRSFIEHDELDQLLDNARQATDEEERLELYRKAQNVLAEQSPYAYL 500
Query: 523 YARKVFLAYRKDVVEGIVINPYTLDVYLDDAKLK 556
Y R + VEG P +L D LK
Sbjct: 501 YYPDSIAGVRNE-VEGFFQYPSGF-YFLRDVTLK 532
>dbj|BAB06745.1| (AP001517) oligopeptide ABC transpoter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 525
Score = 195 bits (491), Expect = 1e-48
Identities = 167/531 (31%), Positives = 259/531 (48%), Gaps = 59/531 (11%)
Query: 44 ETTAALKHKVLVIGYTRDPDTLDPQ-----KSTWVDITTGLVFATLINMGTNGKIIPGLA 98
E A K L+I P +LDP +S +V T ++ TL+ + + +I P LA
Sbjct: 30 ENEDARKGNALIIDLMSYPVSLDPHGANNGESLYVMST---MYDTLVYLDESLEIQPLLA 86
Query: 99 ESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEV 158
ES E+ D + LR+G+ +P AE VK +R+++P+ SP+A + + EV
Sbjct: 87 ESLEMVGD-TIWEAKLRQGVTFHDDSPFNAEAVKANLERVIDPDIGSPVA-FLFDMITEV 144
Query: 159 KVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEF----YEKVG----PVQF-GQTPAG 209
+VID+YTV + + P+ P LP P + SKE YE + P + + P G
Sbjct: 145 EVIDEYTVHIHTEYPFAP-LPSHLAHPGGHMISKEAIEADYEAMANGEEPFSYINEHPVG 203
Query: 210 TGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEF 268
TG Y G Y++ +N YW RE AL F+++ E T V+E
Sbjct: 204 TGFYRYEGAQNGEYVKVVKNENYWDREQAKSDALT-----------FKVVPEDLTRVAEL 252
Query: 269 KAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAI 328
+ G ++ V P + +++ + L Y+GFN K PFND VRQAI AI
Sbjct: 253 ETGEADIIYPVNPNDVNRIEQHHGTKVLKSPSSNLTYLGFNTTKEPFNDPLVRQAIAKAI 312
Query: 329 NREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRD 388
++E II L G+A+P GPL P++ GY ++ K D E+AK LL EAG+
Sbjct: 313 DQEGIINGILNGMALPAKGPLAPTVFGYDDQFSAAKK-----DVEEAKALLDEAGY---- 363
Query: 389 GDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSK 448
NG + + +S +A +Q +L IGI V++ TVE S+F +L
Sbjct: 364 -------PNGFETTI---VSNDTRAFMDIAVFVQQELQAIGIDVQVETVETSTFLELAGN 413
Query: 449 GLHQMYLFRYG--LQDAQILLY-MFHSKKG---VKRMFFYRKDLDEALDKMGTTVDPEER 502
G +M++ +G DA LY MFHS+ R FF ++LD+ L++ D R
Sbjct: 414 GDTEMFVSSWGTVTLDADYGLYPMFHSENAGFPGNRTFFANEELDDLLERARKETDEATR 473
Query: 503 QKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYLDDA 553
+ ++A++I++D P+V LY ++ LA + VEG P ++ Y+ DA
Sbjct: 474 LELYKDAQQIIVDEVPLVFLYHSEL-LAGLGEQVEGFWQYPSSI-FYMRDA 522
>dbj|BAB03750.1| (AP001507) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 538
Score = 190 bits (478), Expect = 3e-47
Identities = 169/579 (29%), Positives = 262/579 (45%), Gaps = 74/579 (12%)
Query: 4 KIVKTLLVF---ALAAALVAAGCI-----GGGTPTQTQTQTGTGT-SPTETTAALKHKVL 54
K+ K +F AL +V A C G P +T G GT +P E L
Sbjct: 2 KVSKNSFLFWALALMLTVVLAACASEPNEGAADP---ETDEGQGTEAPAEAGGDL----- 53
Query: 55 VIGYTRDPDTLDPQKS--TWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITF 112
VI D +LDP S T ++ TL+ + ++ PGLA W +D F
Sbjct: 54 VIAQLSDVVSLDPAGSNDTPSSDVQANIYETLVVTDQDMELHPGLATEWNPIDD-TTWEF 112
Query: 113 HLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKE 172
LR+G++ AE VK +R+++PE SP A + + +++V+DDYTV + +
Sbjct: 113 KLREGVKFHDDTDFNAEVVKANLERILDPEVASPRA-FLYDMITDIEVVDDYTVHITTEF 171
Query: 173 PYGPALPFLATMPPLGIFSKEFYE---------KVGPVQFGQTPAGTGPYYVVKWVRGAY 223
P+ P LP G+ S E E K + P GTG + V Y
Sbjct: 172 PFAP-LPAHLAHNGGGMVSLEAIEADYAAMEEGKDPGSYINENPTGTGYFKFDDRVPDQY 230
Query: 224 IEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPE 282
+ RN YW G ++++ F+++ E T ++E + G+ H+ + P
Sbjct: 231 VRLVRNDDYWD------------GTALLDSVTFKVVGEDLTRIAELETGDSHISNPLSPS 278
Query: 283 FYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLA 342
+ + + L YIGFN K PF+D RVRQAI+MAI++ +II +G+
Sbjct: 279 DVSRVEATEGMHVHRQDSMSLSYIGFNLDKEPFDDVRVRQAISMAIDKSQIIDGIYDGVG 338
Query: 343 VPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFI 402
VP GPL P GY + + +D EKAK+LLAEAG+ D F
Sbjct: 339 VPAIGPLAPGTVGYDDTV-----SGLDHDIEKAKELLAEAGYED-------------GFS 380
Query: 403 VEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYG--L 460
+W + E A +QAQL +IGI V+I +E ++ + + G H M++ +
Sbjct: 381 TTLWTNDNR-ERVDAATNVQAQLKEIGIDVEIEVLEWGTYLENTANGEHDMFVLGWSTVT 439
Query: 461 QDAQILLY-MFHSK---KGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDG 516
DA LY +FHS + R F +LDE LDK D E R + ++ L++
Sbjct: 440 GDADYGLYALFHSSQVGEPGNRTFLKDDELDELLDKARRETDEETRLALYHDVQEKLVEL 499
Query: 517 APMVPLYARKVFLAYRKDVVEGIVINPYTL----DVYLD 551
APM+ ++ ++ L R D V+ + +P + DVY++
Sbjct: 500 APMLYIHHQQYLLGVR-DEVKNLEQSPTQILQLKDVYIE 537
>sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRECURSOR
(DIPEPTIDE-BINDING PROTEIN) (DBP) >gi|95763|pir||A39194
periplasmic dipeptide transport protein precursor dppA -
Escherichia coli >gi|42475|emb|CAA41090.1| (X58051)
dipeptide binding protein (DBP) [Escherichia coli]
>gi|145797|gb|AAA23707.1| (M35045) dipeptide transporter
protein [Escherichia coli] >gi|349225|gb|AAA23702.1|
(L08399) dipeptide-binding protein [Escherichia coli]
>gi|466683|gb|AAB18522.1| (U00039) dppA [Escherichia
coli] >gi|1789966|gb|AAC76569.1| (AE000431) dipeptide
transport protein [Escherichia coli K12]
Length = 535
Score = 186 bits (468), Expect = 5e-46
Identities = 153/535 (28%), Positives = 251/535 (46%), Gaps = 73/535 (13%)
Query: 47 AALKHKVLVIGYTRDPDTLDPQ---KSTWVDITTGLVFATLIN--MGTNGKIIPGLAESW 101
A+++ K LV P+ +PQ T D ++ ++ L+ +GT ++IPGLAE W
Sbjct: 24 ASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTT-EVIPGLAEKW 82
Query: 102 EISEDGKVITFHLRKGIR------DALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGP- 154
E+SEDGK TFHLRKG++ + A+DV F FDR N + +P + G
Sbjct: 83 EVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQ--NPYHKVSGGSY 140
Query: 155 -----------LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYE---KVG- 199
+ EVK +DD TVQ + P P L LA M I SKE+ + K G
Sbjct: 141 EYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLA-MDFASILSKEYADAMMKAGT 199
Query: 200 PVQFGQTPAGTGPYYVVKWVRGAYIEYKR-NPYWKREYRPDPALKNPGPPYIETIRFRII 258
P + P GTGP+ + ++ + + I YK + YW + P I+T+ F I
Sbjct: 200 PEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTK------------PQIDTLVFSIT 247
Query: 259 KEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDT 318
+ ++ + V+ P + D ++ ++ + Y+ +N QK P +D
Sbjct: 248 PDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDV 307
Query: 319 RVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQL 378
+VRQA+ A+N++ IIK +G V + P+M GY++ +++Y YDPEKAK L
Sbjct: 308 KVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYT-----YDPEKAKAL 362
Query: 379 LAEAGWVDRDGDGILEDKNGNKFIVEMWISTGEL----EAPKVAQIIQAQLAKIGIKVKI 434
L EAG LE F +++W + A ++A++IQA AK+G++ KI
Sbjct: 363 LKEAG---------LE----KGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKI 409
Query: 435 RTVEESSFTDLVSKGLHQMYLFRYGLQDAQ------ILLYMFHSKKGVKRMFFYRKDLDE 488
T E + G HQ + + + L S++G + K ++
Sbjct: 410 VTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFED 469
Query: 489 ALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
+ T D +R + ++A+ ++ D AP + + VF RK+ V+G V++P
Sbjct: 470 LIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKE-VKGYVVDP 523
>pir||T44635 dipeptide transporter protein dppA [imported] - Bacillus firmus
(fragment) >gi|1813495|gb|AAB41688.1| (U64514) dipeptide
transporter protein dppA [Bacillus firmus]
Length = 551
Score = 185 bits (466), Expect = 8e-46
Identities = 154/580 (26%), Positives = 266/580 (45%), Gaps = 66/580 (11%)
Query: 9 LLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQ 68
L+V LA L A C T + ++ G E T + + R D++
Sbjct: 5 LMVLLLAFVLFLAACSSDDT-SAPESSDGEAEEEVEGTEGESTGDQTLVFARGGDSVSLD 63
Query: 69 KSTWVD----ITTGLVFATLINMGTNG-KIIPGLAESWEISEDGKVITFHLRKGIRDALG 123
++ D T ++ TLI + +I PGLA WE+ + G FHL +G++ G
Sbjct: 64 YASVTDGESSRVTKNIYETLIEFDRDSFEIGPGLAHDWEVDDSGLRFVFHLEEGVKFHDG 123
Query: 124 NPITAEDVKFVFDRLMNPETRSPMAP-----LVLGP------------LKEVKVIDDYTV 166
AE VK F+R +PE + V G ++E+ V+ DY +
Sbjct: 124 TDFNAEAVKVNFERWADPEHKYAFLDEGYTYSVYGTQFGGYKGDEGHVIEEINVLGDYEI 183
Query: 167 QLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEY 226
+ + +P G L + M I S + +E+ G + P GTGP+ V W R I
Sbjct: 184 EFVLNQPLGSFLQNMG-MSYFAITSPQAFEEHGSA-INENPVGTGPFKFVSWSRDDSIIL 241
Query: 227 KRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYK 285
++N YWK G P ++ + F++I + ++ ++G I ++ + P+
Sbjct: 242 EKNEDYWKE-----------GLPKLDRVIFQVIPDNSARLTALRSGQIDIMDGLNPDDVA 290
Query: 286 DLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPV 345
+ D ++++ + Y+GF+ K PFND VR+A N AI++E +I GLA
Sbjct: 291 QIEGDDSLQVFERTTNNIGYLGFHVDKEPFNDPVVRRAFNHAIDKEGLIAILYGGLAETA 350
Query: 346 HGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEM 405
+ P GY++ ++EY+ YDPE AK+LLAEAG +ED F ++
Sbjct: 351 KNTIPPGYLGYNDAIDEYS-----YDPELAKELLAEAG---------IED----GFTFDL 392
Query: 406 W---ISTGELEAP-KVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQ 461
W ++ + P + A+ IQA LA +GI I T E +++ + +G H +++ +
Sbjct: 393 WTMPVARPYMPDPQRAAEAIQANLADVGITANIVTKEWATYLEETEQGKHDVFMLGWSGV 452
Query: 462 DAQ---ILLYMFHSK--KGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDG 516
+ + H G R F+ ++++E L + T VD + R + E+ ++++ +
Sbjct: 453 NGDPDYFFSNLLHGDAIPGGNRSFYSNEEVNELLVQAKTEVDFDVRAELYEQVQELIHED 512
Query: 517 APMVPLYARKVFLAYRKDVVEGIVINPYTLDVYLDDAKLK 556
APMVPL LA + V+ V +P T + LD+ +L+
Sbjct: 513 APMVPLVHSIPTLAGSSN-VKNYVPHPSTSET-LDEVELE 550
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
>gi|1311041|pdb|1DPP|C Chain C, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311043|pdb|1DPP|E Chain E, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311045|pdb|1DPP|G Chain G, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 184 bits (463), Expect = 2e-45
Identities = 152/530 (28%), Positives = 247/530 (45%), Gaps = 73/530 (13%)
Query: 52 KVLVIGYTRDPDTLDPQ---KSTWVDITTGLVFATLIN--MGTNGKIIPGLAESWEISED 106
K LV P+ +PQ T D ++ ++ L+ +GT ++IPGLAE WE+SED
Sbjct: 1 KTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTT-EVIPGLAEKWEVSED 59
Query: 107 GKVITFHLRKGIR------DALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGP------ 154
GK TFHLRKG++ + A+DV F FDR N + +P + G
Sbjct: 60 GKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQ--NPYHKVSGGSYEYFEG 117
Query: 155 ------LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYE---KVG-PVQFG 204
+ EVK +DD TVQ + P P L LA M I SKE+ + K G P +
Sbjct: 118 MGLPELISEVKKVDDNTVQFVLTRPEAPFLADLA-MDFASILSKEYADAMMKAGTPEKLD 176
Query: 205 QTPAGTGPYYVVKWVRGAYIEYKR-NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFT 263
P GTGP+ + ++ + + I YK + YW + P I+T+ F I +
Sbjct: 177 LNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTK------------PQIDTLVFSITPDASV 224
Query: 264 LVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQA 323
++ + V+ P + D ++ ++ + Y+ +N QK P +D +VRQA
Sbjct: 225 RYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQA 284
Query: 324 INMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAG 383
+ A+N++ IIK +G V + P+M GY++ +++Y YDPEKAK LL EAG
Sbjct: 285 LTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYT-----YDPEKAKALLKEAG 339
Query: 384 WVDRDGDGILEDKNGNKFIVEMWISTGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEE 439
LE F +++W + A ++A++IQA AK+G++ KI T E
Sbjct: 340 ---------LE----KGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEW 386
Query: 440 SSFTDLVSKGLHQMYLFRYGLQDAQ------ILLYMFHSKKGVKRMFFYRKDLDEALDKM 493
+ G HQ + + + L S++G + K ++ +
Sbjct: 387 GEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPA 446
Query: 494 GTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
T D +R + ++A+ ++ D AP + + VF RK+ V+G V++P
Sbjct: 447 RATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKE-VKGYVVDP 495
>pir||B83082 probable binding protein component of ABC transporter PA4502
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950742|gb|AAG07890.1|AE004864_2 (AE004864) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 531
Score = 184 bits (462), Expect = 2e-45
Identities = 154/534 (28%), Positives = 246/534 (45%), Gaps = 73/534 (13%)
Query: 48 ALKHKVLVIGYTRDPDTLDPQKSTWV---DITTGLVFATLINM--GTNGKIIPGLAESWE 102
A + K LV+ P+ D + T D + VF L+ GT ++IPGLAE W+
Sbjct: 20 AAQAKNLVVCTEASPEGFDIVQYTGAVTADASAETVFNRLLAFRPGTT-EVIPGLAERWD 78
Query: 103 ISEDGKVITFHLRKGIRDALGN------PITAEDVKFVFDRLMNPETRSPMAPLV----- 151
+S DG TFHLR G++ + + A+DV + F R ++P+ + L
Sbjct: 79 VSADGLSYTFHLRPGVKFHTTDYFKPTRSLNADDVLWTFQRALDPKHPWHASALRGYAYF 138
Query: 152 ----LGPL-KEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPV----Q 202
+G L K V+ +D+ TV+ + P P L +A MP I+S E+ +++ Q
Sbjct: 139 DAMGMGELIKSVEKVDELTVRFVLNRPEAPFLRDMA-MPFASIYSAEYGDQLLAAGKLGQ 197
Query: 203 FGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPF 262
P GTGP+ ++ + A + Y NP + G P I+ + F I +P
Sbjct: 198 LNNQPIGTGPFVFKRYAKDAQVRYTANPDYYA-----------GKPPIDNLVFAITLDPN 246
Query: 263 TLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQ 322
+ + +AG V L PE L DPN+ + + YI N Q P +D RVRQ
Sbjct: 247 VRMQKVRAGECQVSLYPKPEDVPRLKQDPNLAVDEIDALLTTYIAINTQHKPLDDPRVRQ 306
Query: 323 AINMAINREEIIKYAL-EGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAE 381
AIN+A++++ ++ G A P GP P++ GY+ + Q +P+DPE+A+ LL E
Sbjct: 307 AINLALDKKAMLDAVFGPGAASPAVGPYPPTLLGYNHSI-----QDWPHDPERARALLKE 361
Query: 382 AGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKV------AQIIQAQLAKIGIKVKIR 435
AG + ++I G +P + AQ++QA LAK GI++ IR
Sbjct: 362 AG--------------AENLRITLFIRNG--TSPTIPNPALAAQMLQADLAKAGIQLTIR 405
Query: 436 TVEESSFTDLVSKGLHQMYLFRYGLQDA------QILLYMFHSKKGVKRMFFYRKDLDEA 489
++E G H + L + + L ++ G + + KD +
Sbjct: 406 SLEWGELLKRSKAGEHDLSLLGWAGDNGDPDNFLSPNLSCAAAESGENQARWCDKDFEAL 465
Query: 490 LDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
+ K DP ER K E+A+ + + AP +PL K+F R++ V+G VINP
Sbjct: 466 MRKAREVSDPAERAKLYEQAQVVFHEQAPWIPLAYPKLF-NVRRNTVQGYVINP 518
>pir||C70425 transporter (extracellular solute binding protein family 5) -
Aquifex aeolicus >gi|2983834|gb|AAC07389.1| (AE000740)
transporter (extracellular solute binding protein family
5) [Aquifex aeolicus]
Length = 584
Score = 183 bits (461), Expect = 3e-45
Identities = 163/537 (30%), Positives = 254/537 (46%), Gaps = 68/537 (12%)
Query: 44 ETTAALKHKVLVIGYTRDPDTLDPQ-----KSTWV--DITTGLVFATLINMGTNGKIIPG 96
E + +VL + DP TL+P ST V D+ +GL L M K+ P
Sbjct: 45 EIPQEISKRVLRFHLSSDPKTLNPALAMETSSTAVIGDLFSGLTKLDLKTM----KVKPN 100
Query: 97 LAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRL-MNPETRSPMAPLVLGPL 155
LA+ WE+ E GKV F+LRK ++ + G P TA+DV F F+ + +N + + +
Sbjct: 101 LAQGWEVREGGKVWIFYLRKDVKWSDGKPFTADDVVFTFNEVYLNDKIPTTARDIFTIKG 160
Query: 156 KEVKV--IDDYTVQLIYKEPYGPALPFLAT--MPPL--------GIFSKEFYEKVGPVQF 203
K++KV ID+YTV+ I EP+ P L L +P G FS + P +
Sbjct: 161 KKIKVRKIDEYTVEFILPEPFAPFLNSLGVEILPKHKLENYVKEGTFSTAWNVNTNPKEI 220
Query: 204 GQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFT 263
GTG Y + ++V+G + Y+ NPY+ + L PYI+ II +P T
Sbjct: 221 ----VGTGAYKIEEYVKGQRVVYRANPYYYEKDENGNRL-----PYIKEKVGVIIPDPDT 271
Query: 264 LVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMI-------PALEYVLHYIGFNCQ--KYP 314
+ +F G I + V + LAN + + + P+ +++ N + KY
Sbjct: 272 ALLKFVNGEIDYI-GVRAQDLLFLANQKDKDFVVYDLGATPSTTFLVFNQNPNAKIPKYK 330
Query: 315 ---FNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYD 371
F D R AI+ AI+RE I+K GLA P++ P+ P+ Y EE K+ ++
Sbjct: 331 IKWFRDRTFRIAISHAIDREGIVKLVYNGLAQPLYTPITPANRPY---YEESYYPKFEFN 387
Query: 372 PEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIK 431
+KA++LL G+ DRDGDGILED G+ + + G E + II+ L KIGIK
Sbjct: 388 LKKARELLESIGFKDRDGDGILEDPEGHDLEFTLITNAGNKEREMMGAIIKEDLRKIGIK 447
Query: 432 VKIRTVEESSFTDLVSKGLHQMYLFR------YGLQDAQILLYMFHSKKGVKRMFF---- 481
V + ++ F LVSK Y + G D ++HS G M++
Sbjct: 448 VHFQPID---FNTLVSKLTSPPYEWEAVIIGLTGSIDPHFGRNVWHS-SGSLHMWYPRQK 503
Query: 482 -----YRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRK 533
+ K +DE +DK T ++ E+R + E +I+ + PM+ + A K +A +K
Sbjct: 504 QPSTEWEKKVDELIDKGATELNYEKRVQIYREMFRIITEEQPMIFIAAPKSMVAVKK 560
>pdb|1DPE| Dipeptide-Binding Protein
Length = 507
Score = 182 bits (456), Expect = 1e-44
Identities = 151/530 (28%), Positives = 246/530 (45%), Gaps = 73/530 (13%)
Query: 52 KVLVIGYTRDPDTLDPQ---KSTWVDITTGLVFATLIN--MGTNGKIIPGLAESWEISED 106
K LV P+ +PQ T D ++ ++ L+ +GT ++IPGLAE WE+SED
Sbjct: 1 KTLVYCSEGSPEGFNPQLFISGTTYDASSVPLYNRLVEFKIGTT-EVIPGLAEKWEVSED 59
Query: 107 GKVITFHLRKGIR------DALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGP------ 154
GK TFHLRKG++ + A+DV F FDR N + +P + G
Sbjct: 60 GKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQ--NPYHKVSGGSYEYFEG 117
Query: 155 ------LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYE---KVG-PVQFG 204
+ EVK +DD TVQ + P P L LA M I SKE+ + K G P +
Sbjct: 118 MGLPELISEVKKVDDNTVQFVLTRPEAPFLADLA-MDFASILSKEYADAMMKAGTPEKLD 176
Query: 205 QTPAGTGPYYVVKWVRGAYIEYKR-NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFT 263
P GTGP+ + ++ + + I YK + YW + P I+T+ F I +
Sbjct: 177 LNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTK------------PQIDTLVFSITPDASV 224
Query: 264 LVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQA 323
++ + V+ P + D ++ ++ + Y+ +N QK P +D +VRQA
Sbjct: 225 RYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQA 284
Query: 324 INMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAG 383
+ A+N++ IIK +G V + P+M GY++ +++Y YDPEKAK LL EAG
Sbjct: 285 LTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYT-----YDPEKAKALLKEAG 339
Query: 384 WVDRDGDGILEDKNGNKFIVEMWISTGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEE 439
LE F +++W + A ++A++IQA AK+G++ KI T E
Sbjct: 340 ---------LE----KGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEW 386
Query: 440 SSFTDLVSKGLHQMYLFRYGLQDAQ------ILLYMFHSKKGVKRMFFYRKDLDEALDKM 493
+ G HQ + + + S++G + K ++ +
Sbjct: 387 GEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWCYKPFEDLIQPA 446
Query: 494 GTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
T D +R + ++A+ ++ D AP + + VF RK+ V+G V++P
Sbjct: 447 RATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKE-VKGYVVDP 495
>dbj|BAB04735.1| (AP001510) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 536
Score = 181 bits (455), Expect = 2e-44
Identities = 145/542 (26%), Positives = 250/542 (45%), Gaps = 57/542 (10%)
Query: 13 ALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW 72
+ AA+L+ GC T T+ + G + E L++G D LDP S+
Sbjct: 13 SFAASLLLIGCASEPT---TEQEENAGDAGGEAIGDSGGGDLILGVLSDISMLDPHTSS- 68
Query: 73 VDITTGLV----FATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITA 128
D+ +G V + TL+ ++ ++ P LAESWE E+ V F L++G+ G+
Sbjct: 69 -DVPSGAVQSNIYETLVKFNSDMELEPLLAESWEAVEED-VWEFRLQEGVTFHDGSEFNG 126
Query: 129 EDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLG 188
+ VK +R+++ T SP A ++ +++++V+D +TV++ ++P+ P A
Sbjct: 127 DVVKANIERILDETTASPRA-ILFEIIEKIEVVDSHTVRMKTEQPFAPLPAHFAHYASSM 185
Query: 189 IFSKEFYEKVGPVQFGQTPA--------GTGPYYVVKWVRGAYIEYKR-NPYWKREYRPD 239
I K V+ G+ P GTG + W G+ + R + YW
Sbjct: 186 ISLKAIEADQVAVESGEQPGTYINEHPYGTGAFTFENWNPGSEVVLSRFDDYWGE----- 240
Query: 240 PALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPAL 299
P +++T FR+I E T ++E + G +H++ V + N + +
Sbjct: 241 -------PAHVDTATFRVIPEDLTRLAELETGGVHIIDPVQASDRARVENTDGMNLYQRN 293
Query: 300 EYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEK 359
+ Y+GFN QK P +D VRQAI +A++++ +++ L+G P GP+ + G+S +
Sbjct: 294 AASITYMGFNVQKEPLDDELVRQAIALALDKDAMLQGVLDGTGEPAVGPINETNFGFSSE 353
Query: 360 MEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQ 419
+ + D E+A++LLAEAG+ + F +W + E +A+
Sbjct: 354 VAGVEQ-----DVERARELLAEAGYEE-------------GFSTTIWTNDNR-ERMDIAE 394
Query: 420 IIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYL--FRYGLQDAQILLYM-FHSK--- 473
I QA LA +GI I VE ++ +L G H +++ G DA ++M FHS+
Sbjct: 395 IAQANLADVGIDANIEVVEWGAYLELTGSGNHDLFILGLSLGTGDADYPMHMLFHSENIG 454
Query: 474 KGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRK 533
+ R FF + D L + D E R + EA + L + P V LY + YR
Sbjct: 455 ETGNRSFFQDEAFDAMLHEARIEQDEETRLQMYVEATEYLNEKVPTVFLYHPDHLMGYRD 514
Query: 534 DV 535
+V
Sbjct: 515 EV 516
>pir||H83083 probable binding protein component of ABC transporter PA4497
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950736|gb|AAG07885.1|AE004863_5 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 532
Score = 181 bits (454), Expect = 2e-44
Identities = 148/518 (28%), Positives = 231/518 (44%), Gaps = 65/518 (12%)
Query: 52 KVLVIGYTRDPDTLDPQKST---WVDITTGLVFATLINMGT-NGKIIPGLAESWEISEDG 107
K L + P+ DP + T D + ++ L + +IP LAESW++S DG
Sbjct: 27 KTLAVCTEAAPEGFDPARYTSGYTFDASAHPLYNALAAFAPGSATVIPALAESWDVSADG 86
Query: 108 KVITFHLRKGIRDALGN------PITAEDVKFVFDRLMNPE----TRSPM------APLV 151
V TF LR+G++ + A+DV F F R+++P+ SP A +
Sbjct: 87 LVYTFRLRQGVKFHSTDYFKPTREFDADDVLFSFQRMLDPQHPAHDLSPSGYPYADAMQL 146
Query: 152 LGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKV----GPVQFGQTP 207
++ ++ ID++ V+ + K P P L LA MP I S E+ ++ + P
Sbjct: 147 RDIIERIEKIDEHQVRFVLKHPEAPFLADLA-MPFGSILSAEYAGQLIARGKGDELNSKP 205
Query: 208 AGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVS 266
GTGP+ ++ + A + Y NP YWK G P I+ + I +P V
Sbjct: 206 IGTGPFVFTRYRKDAQVRYAANPDYWK------------GKPAIDHLVLAITLDPNVRVQ 253
Query: 267 EFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINM 326
+ + L PE L DP + ++ + + N + PF+D RVR+AI M
Sbjct: 254 RLRRNECQIALTPKPEDVAALRQDPQLTVLEEAAMITSHAAINTRHEPFDDPRVRRAIAM 313
Query: 327 AINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVD 386
N+ +K A P GP P + GY + + + +PYDPE+AK LL EA
Sbjct: 314 GFNKSSYLKIVFGDQARPAIGPYPPMLLGYDDSIRD-----WPYDPERAKALLKEA---- 364
Query: 387 RDGDGILEDKNGNKFIVEMWISTGE---LEAPKVAQIIQAQLAKIGIKVKIRTVEESSFT 443
G+ D N ++ISTG +VAQ+IQ+ LA IGI+V IR E
Sbjct: 365 ----GVTPDTPLN-----LYISTGSGPGGNPARVAQLIQSDLAAIGIRVNIRQFEWGEMV 415
Query: 444 DLVSKGLHQMYLFRYGLQDAQILLYMFHS------KKGVKRMFFYRKDLDEALDKMGTTV 497
G H M L+ + + ++ H+ + G R + K DEA+ K +
Sbjct: 416 KRTKAGEHDMMLYSWIGDNGDPDNFLTHNLGCASVESGENRARWCDKGFDEAIRKARMSN 475
Query: 498 DPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDV 535
D +R +EA++I + P +PL +F A RK+V
Sbjct: 476 DESQRVALYKEAQRIFHEQMPWLPLAHPLMFDAQRKNV 513
>dbj|BAA75392.1| (AB013376) AppA [Bacillus halodurans]
Length = 531
Score = 176 bits (441), Expect = 7e-43
Identities = 155/512 (30%), Positives = 244/512 (47%), Gaps = 76/512 (14%)
Query: 10 LVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQK 69
L+ L AL+ A C P+ ++ + TG + ET L+ IG DP +LDP
Sbjct: 12 LLLILMTALLTA-CSNSAEPSSSKEEE-TGENLQETGGNLQ-----IGVMNDPVSLDPHG 64
Query: 70 STWVDITTGL---VFATLINMGTNGKIIPGLAES--------WEISEDGKVITFHLRKGI 118
+ +++ + ++ L+ + N +I PGLAES WE S +RK +
Sbjct: 65 AN-ENVSNSINSNMYDRLVYLDKNLEIAPGLAESLVQIGETTWEAS---------IRKDV 114
Query: 119 RDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPAL 178
+ G+ + AE VK FDR+ +PE SP+A + + EVKVIDDYTV + P+ P L
Sbjct: 115 QFHDGSQLNAEVVKANFDRIRDPEIGSPVA-FLFNMITEVKVIDDYTVHFETEFPFAP-L 172
Query: 179 PFLATMPPLGIFS----KEFYEKV--GPVQFGQT---PAGTGPYYVVKWVRGAYIEYKRN 229
P P I S + YE + G F T P GTG + G + R+
Sbjct: 173 PSHLAHPGGSIISMGSIEASYEALEKGEDAFTPTNERPIGTGYFKFEDRTPGQSVTLSRH 232
Query: 230 P-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLA 288
YW E ++T+ F++I E T ++E + G IH+ V P + +
Sbjct: 233 ENYWGDELAK-----------VDTVTFQVIPEDLTRIAELETGGIHLTYPVNPSDAERIE 281
Query: 289 NDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGP 348
N P+ + A + Y+GFN + PF+D +VRQAI+MAI+++ I+ + G+ + GP
Sbjct: 282 NGPDTYLEQANSTRMVYLGFNTEVEPFDDPKVRQAIHMAIDKDGILDGVVSGIGIRADGP 341
Query: 349 LVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIS 408
+ P + G+SE+++ K +D E AK LLAEAG+ D +L D
Sbjct: 342 IAPDVFGFSEQID-----KITFDREMAKDLLAEAGYPDGFPTTLLTD------------- 383
Query: 409 TGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYG--LQDAQIL 466
+ E +A++IQ QL++IGI V I E ++ + G +++L +G D
Sbjct: 384 -DDRERQDLAEMIQYQLSEIGIDVSIDMFEFGTYLERAGNGESELFLGSWGTVTMDGDYG 442
Query: 467 LY-MFH-SKKGV--KRMFFYRKDLDEALDKMG 494
LY +FH S KG R F +L +++G
Sbjct: 443 LYPVFHSSNKGSAGNRSFIEHDELSALTEQLG 474
>pir||A43832 heme-binding protein A precursor - Haemophilus influenzae (type b)
>gi|11277226|pir||T45066 heme-binding lipoprotein
precursor hbpA [validated] - Haemophilus influenzae
>gi|148894|gb|AAA24962.1| (M84028) heme-binding
lipoprotein [Haemophilus influenzae]
Length = 547
Score = 175 bits (439), Expect = 1e-42
Identities = 161/578 (27%), Positives = 255/578 (43%), Gaps = 75/578 (12%)
Query: 6 VKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTL 65
+K L A AA LV A C + ++ QT +S T V P
Sbjct: 3 LKATLTLA-AATLVLAACDQSSSANKSTAQTEAKSSSNNT--------FVYCTANSPLGF 53
Query: 66 DPQ---KSTWVDITTGLVFATLINMGTNGKII-PGLAESWEISEDGKVITFHLRKGIRDA 121
P + T + ++ V+ L+ I P LAESWEIS+DG TFHLRKG++
Sbjct: 54 SPALIIEGTSYNASSQQVYNRLVEFKKGSTDIEPALAESWEISDDGLSYTFHLRKGVKFH 113
Query: 122 LGNPIT------AEDVKFVFDRLMNP--------ETRSPMAPLVLGP--LKEVKVIDDYT 165
T A+DV F F R ++P + P + P LK V+ +DD T
Sbjct: 114 TTKEFTPTRDFNADDVVFSFQRQLDPNHPYHNVSKGTYPYFKAMKFPELLKSVEKVDDNT 173
Query: 166 VQLIYKEPYGPALPFLATMPPLGIFSKEFYE---KVG-PVQFGQTPAGTGPYYVVKWVRG 221
+++ + L L M + I+S E+ + K G P P GTGP+ V +
Sbjct: 174 IRITLNKNDATFLASLG-MDFISIYSAEYADSMLKAGKPETLDSRPVGTGPFVFVDYKTD 232
Query: 222 AYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVP 280
I+Y N YWK G ++ + I+ + T ++ +AG ++L
Sbjct: 233 QAIQYVANENYWK------------GRTPLDRLVISIVPDATTRYAKLQAGTCDLILFPN 280
Query: 281 PEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEG 340
+ DP V+++ + YI FN +K PF++ +VRQA+N A++++ II+ +G
Sbjct: 281 VADLAKMKTDPKVQLLEQKGLNVAYIAFNTEKAPFDNVKVRQALNYAVDKKAIIEAVYQG 340
Query: 341 LAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNK 400
+ PL P++ Y++++ Q YPYDPEKAKQLL EAG+ N
Sbjct: 341 AGISAKNPLPPTIWSYNDEI-----QDYPYDPEKAKQLLVEAGY-------------PNG 382
Query: 401 FIVEMWIS----TGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLF 456
F + WI ++A++I A AKIG+K T E + + +G +F
Sbjct: 383 FETDFWIQPVIRASNPNPKRMAELIMADWAKIGVKTNPVTYEWADYRKRAKEGELTAGIF 442
Query: 457 RY----GLQDAQILLYMFHSKKGVKRMF-FYRKDLDEALDKMGTTVDPEERQKYIEEAEK 511
+ G D + + S G M F + D L++ + EER K ++A+
Sbjct: 443 GWSGDNGDPDNFLSPLLGSSNIGNSNMARFNNSEFDALLNEAIGLTNKEERAKLYKQAQV 502
Query: 512 ILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
I+ + AP +P+ A V A V+G V +P+ D +
Sbjct: 503 IVHNQAPWIPV-AHSVGFAPLSPRVKGYVQSPFGYDAF 539
>pir||D64098 heme-binding protein A precursor - Haemophilus influenzae
>gi|1573869|gb|AAC22512.1| (U32767) heme-binding
lipoprotein (dppA) [Haemophilus influenzae Rd]
Length = 549
Score = 174 bits (437), Expect = 2e-42
Identities = 162/580 (27%), Positives = 261/580 (44%), Gaps = 70/580 (12%)
Query: 1 MRQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTR 60
M K+ TL + AA LV A C + ++ QT +S T K +G++
Sbjct: 1 MLMKLKATLTL--AAATLVLAACDQSSSANKSTAQTEAKSSSNNTFVYCTAKA-PLGFS- 56
Query: 61 DPDTLDPQKSTWVDITTGLVFATLINMGTNGKII-PGLAESWEISEDGKVITFHLRKGIR 119
P + + T + ++ V+ L+ I P LAESWEIS+DG TFHLRKG++
Sbjct: 57 -PALII--EGTSYNASSQQVYNRLVEFKKGSTDIEPALAESWEISDDGLSYTFHLRKGVK 113
Query: 120 DALGNPIT------AEDVKFVFDRLMNP--------ETRSPMAPLVLGP--LKEVKVIDD 163
T A+DV F F R ++P + P + P LK V+ +DD
Sbjct: 114 FHTTKEFTPTRDFNADDVVFSFQRQLDPNHPYHNVSKGTYPYFKAMKFPELLKSVEKVDD 173
Query: 164 YTVQLIYKEPYGPALPFLATMPPLGIFSKEFYE---KVG-PVQFGQTPAGTGPYYVVKWV 219
T+++ + L L M + I+S E+ + K G P P GTGP+ V +
Sbjct: 174 NTIRITLNKTDATFLASLG-MDFISIYSAEYADSMLKAGKPETLDSRPVGTGPFVFVDYK 232
Query: 220 RGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD 278
I+Y + YWK G ++ + I+ + T ++ +AG ++L
Sbjct: 233 TDQAIQYVAHENYWK------------GRTPLDRLVISIVPDATTRYAKLQAGTCDLILF 280
Query: 279 VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYAL 338
+ DP V+++ + YI FN +K PF++ +VRQA+N A++++ II+
Sbjct: 281 PNVADLAKMKTDPKVQLLEQKGLNVAYIAFNTEKAPFDNVKVRQALNYAVDKKAIIEAVY 340
Query: 339 EGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNG 398
+G PL P++ Y++++ Q YPYDPEKAKQLLAEAG+
Sbjct: 341 QGAGTSAKNPLPPTIWSYNDEI-----QDYPYDPEKAKQLLAEAGY-------------P 382
Query: 399 NKFIVEMWIS----TGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMY 454
N F + WI ++A++I A AKIG+K T E + + +G
Sbjct: 383 NGFETDFWIQPVIRASNPNPKRMAELIMADWAKIGVKTNPVTYEWADYRKRAKEGELTAG 442
Query: 455 LFRY----GLQDAQILLYMFHSKKGVKRMF-FYRKDLDEALDKMGTTVDPEERQKYIEEA 509
+F + G D + + S G M F + D L++ + EER K ++A
Sbjct: 443 IFGWSGDNGDPDNFLSPLLGSSNIGNSNMARFNNSEFDALLNEAIGLTNKEERAKLYKQA 502
Query: 510 EKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+ I+ + AP +P+ A V A V+G V +P+ D +
Sbjct: 503 QVIVHNQAPWIPV-AHSVGFAPLSPRVKGYVQSPFGYDAF 541
>sp|P33950|HBPA_HAEIN HEME-BINDING PROTEIN A PRECURSOR (HEMIN-BINDING LIPOPROTEIN)
Length = 547
Score = 174 bits (436), Expect = 3e-42
Identities = 161/575 (28%), Positives = 259/575 (45%), Gaps = 69/575 (12%)
Query: 6 VKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTL 65
+K L A AA LV A C + ++ QT +S T K +G++ P +
Sbjct: 3 LKATLTLA-AATLVLAACDQSSSANKSTAQTEAKSSSNNTFVYCTAKA-PLGFS--PALI 58
Query: 66 DPQKSTWVDITTGLVFATLINMGTNGKII-PGLAESWEISEDGKVITFHLRKGIRDALGN 124
+ T + ++ V+ L+ I P LAESWEIS+DG TFHLRKG++
Sbjct: 59 I--EGTSYNASSQQVYNRLVEFKKGSTDIEPALAESWEISDDGLSYTFHLRKGVKFHTTK 116
Query: 125 PIT------AEDVKFVFDRLMNP--------ETRSPMAPLVLGP--LKEVKVIDDYTVQL 168
T A+DV F F R ++P + P + P LK V+ +DD T+++
Sbjct: 117 EFTPTRDFNADDVVFSFQRQLDPNHPYHNVSKGTYPYFKAMKFPELLKSVEKVDDNTIRI 176
Query: 169 IYKEPYGPALPFLATMPPLGIFSKEFYE---KVG-PVQFGQTPAGTGPYYVVKWVRGAYI 224
+ L L M + I+S E+ + K G P P GTGP+ V + I
Sbjct: 177 TLNKTDATFLASLG-MDFISIYSAEYADSMLKAGKPETLDSRPVGTGPFVFVDYKTDQAI 235
Query: 225 EYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEF 283
+Y + YWK G ++ + I+ + T ++ +AG ++L
Sbjct: 236 QYVAHENYWK------------GRTPLDRLVISIVPDATTRYAKLQAGTCDLILFPNVAD 283
Query: 284 YKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAV 343
+ DP V+++ + YI FN +K PF++ +VRQA+N A++++ II+ +G
Sbjct: 284 LAKMKTDPKVQLLEQKGLNVAYIAFNTEKAPFDNVKVRQALNYAVDKKAIIEAVYQGAGT 343
Query: 344 PVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIV 403
PL P++ Y++++ Q YPYDPEKAKQLLAEAG+ N F
Sbjct: 344 SAKNPLPPTIWSYNDEI-----QDYPYDPEKAKQLLAEAGY-------------PNGFET 385
Query: 404 EMWIS----TGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRY- 458
+ WI ++A++I A AKIG+K T E + + +G +F +
Sbjct: 386 DFWIQPVIRASNPNPKRMAELIMADWAKIGVKTNPVTYEWADYRKRAKEGELTAGIFGWS 445
Query: 459 ---GLQDAQILLYMFHSKKGVKRMF-FYRKDLDEALDKMGTTVDPEERQKYIEEAEKILI 514
G D + + S G M F + D L++ + EER K ++A+ I+
Sbjct: 446 GDNGDPDNFLSPLLGSSNIGNSNMARFNNSEFDALLNEAIGLTNKEERAKLYKQAQVIVH 505
Query: 515 DGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+ AP +P+ A V A V+G V +P+ D +
Sbjct: 506 NQAPWIPV-AHSVGFAPLSPRVKGYVQSPFGYDAF 539
>sp|P75797|YLIB_ECOLI PUTATIVE BINDING PROTEIN YLIB PRECURSOR >gi|7442326|pir||F64820
probable oligopeptide-binding periplasmic protein
precursor - Escherichia coli >gi|1787052|gb|AAC73917.1|
(AE000185) putative transport protein [Escherichia coli
K12]
Length = 512
Score = 171 bits (428), Expect = 2e-41
Identities = 143/515 (27%), Positives = 237/515 (45%), Gaps = 49/515 (9%)
Query: 46 TAALKHKVLVIGYTRDPDTLDPQKS--TWVDITTGLVFATLINMGTNGKIIPGLAESWEI 103
+ A K +V+ + TLDP + T + L + K+ LAES+ +
Sbjct: 22 SCAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTV 81
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDD 163
S+DG T LR+GI+ G A VK DR +P L + + + ID
Sbjct: 82 SDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKRYNLYKN-IAKTEAIDP 140
Query: 164 YTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAY 223
TV++ K+P+ + LA P + S EK G + G P GTGPY + W + +
Sbjct: 141 TTVKITLKQPFSAFINILAH-PATAMISPAALEKYGK-EIGFYPVGTGPYELDTWNQTDF 198
Query: 224 IEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPE 282
++ K+ YW+ PG P +++I +R + + T + + G +P E
Sbjct: 199 VKVKKFAGYWQ-----------PGLPKLDSITWRPVADNNTRAAMLQTGEAQFAFPIPYE 247
Query: 283 FYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLA 342
L + N+E++ + + YI N + PF++ +VR+A+N AINR ++K A G A
Sbjct: 248 QATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYA 307
Query: 343 VPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFI 402
P G + PS+ Y++ + + +PYDP KA++LL EAG+ N F
Sbjct: 308 TPATGVVPPSI-AYAQ-----SYKPWPYDPVKARELLKEAGY-------------PNGFS 348
Query: 403 VEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESS-FTDLVSKGLHQ--MYLFRYG 459
+W S A KV Q Q QLA++GIK ++ ++ ++ KG + + +F G
Sbjct: 349 TTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTG 408
Query: 460 LQDAQ-----ILLYMFHSKKGVKRMF---FY-RKDLDEALDKMGTTVDPEERQKYIEEAE 510
+ L +F S+ +F FY K +D+ L + T DP E+ + + A+
Sbjct: 409 WSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQ 468
Query: 511 KILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYT 545
I+ +P +PL K+ A+ K++ G I P T
Sbjct: 469 DIIWQESPWIPLVVEKLVSAHSKNLT-GFWIMPDT 502
>dbj|BAA35525.1| (D90721) Heme-binding protein a precursor (hemin-binding
lipoprotein). [Escherichia coli]
Length = 598
Score = 171 bits (428), Expect = 2e-41
Identities = 143/515 (27%), Positives = 237/515 (45%), Gaps = 49/515 (9%)
Query: 46 TAALKHKVLVIGYTRDPDTLDPQKS--TWVDITTGLVFATLINMGTNGKIIPGLAESWEI 103
+ A K +V+ + TLDP + T + L + K+ LAES+ +
Sbjct: 108 SCAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTV 167
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDD 163
S+DG T LR+GI+ G A VK DR +P L + + + ID
Sbjct: 168 SDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKRYNLYKN-IAKTEAIDP 226
Query: 164 YTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAY 223
TV++ K+P+ + LA P + S EK G + G P GTGPY + W + +
Sbjct: 227 TTVKITLKQPFSAFINILAH-PATAMISPAALEKYGK-EIGFYPVGTGPYELDTWNQTDF 284
Query: 224 IEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPE 282
++ K+ YW+ PG P +++I +R + + T + + G +P E
Sbjct: 285 VKVKKFAGYWQ-----------PGLPKLDSITWRPVADNNTRAAMLQTGEAQFAFPIPYE 333
Query: 283 FYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLA 342
L + N+E++ + + YI N + PF++ +VR+A+N AINR ++K A G A
Sbjct: 334 QATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYA 393
Query: 343 VPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFI 402
P G + PS+ Y++ + + +PYDP KA++LL EAG+ N F
Sbjct: 394 TPATGVVPPSI-AYAQ-----SYKPWPYDPVKARELLKEAGY-------------PNGFS 434
Query: 403 VEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESS-FTDLVSKGLHQ--MYLFRYG 459
+W S A KV Q Q QLA++GIK ++ ++ ++ KG + + +F G
Sbjct: 435 TTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTG 494
Query: 460 LQDAQ-----ILLYMFHSKKGVKRMF---FY-RKDLDEALDKMGTTVDPEERQKYIEEAE 510
+ L +F S+ +F FY K +D+ L + T DP E+ + + A+
Sbjct: 495 WSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQ 554
Query: 511 KILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYT 545
I+ +P +PL K+ A+ K++ G I P T
Sbjct: 555 DIIWQESPWIPLVVEKLVSAHSKNLT-GFWIMPDT 588
>pir||F71951 periplasmic dipeptide transport substrate-binding protein -
Helicobacter pylori (strain J99)
>gi|4154808|gb|AAD05864.1| (AE001465) PERIPLASMIC
DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 169 bits (423), Expect = 9e-41
Identities = 158/506 (31%), Positives = 230/506 (45%), Gaps = 73/506 (14%)
Query: 53 VLVIGYTRDPDTLDPQKSTWVD--ITTGLVFATLINM--GTNGKIIPGLAESWEISEDGK 108
VLV D ++DP T + + TG ++ TL+ GT ++ P LA SWEIS DG
Sbjct: 45 VLVFARGADGSSMDPALVTDGESYVATGNIYDTLVQFKYGTT-EVEPALATSWEISPDGL 103
Query: 109 VITFHLRKGI---RDALGNP---ITAEDVKFVFDRLMNPETR--SPMAPLV-----LGP- 154
V TFHLRKG+ + N +A+DV F F+R M+ R SP A +G
Sbjct: 104 VYTFHLRKGVYFHQTKYWNKKVEFSAKDVLFSFERQMDKAKRYYSPGAKSYKYWEGMGMS 163
Query: 155 --LKEVKVIDDYTVQLIYKEPYGPALPFLAT--MPPLGIFSKEFYEKVGPV----QFGQT 206
+K ++ +DDYT++ GP PFLA M L I SK++ + + + +
Sbjct: 164 HIIKSIEALDDYTIRFTLN---GPEAPFLANLGMDFLSILSKDYADYLAQNNKKDELAKK 220
Query: 207 PAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPP-YIETIRFRIIKEPFTL 264
P GTGP+ W + I +N YW GP Y++ + R I T
Sbjct: 221 PVGTGPFKFFLWNKDEKIILVKNQDYW-------------GPKAYLDKVVVRTIPNSSTR 267
Query: 265 VSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAI 324
+ G I ++ + L PN+ + + + +++ N QK FN+ VR AI
Sbjct: 268 ALALRTGEIMLMTGPNLNEVEQLEKLPNIVVDRSPGLIANWLSLNTQKKYFNNPLVRLAI 327
Query: 325 NMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGW 384
N AIN ++ IK EG A + P P++ GY+ Y + Y YD +KAK+LL +AG+
Sbjct: 328 NHAINVDDYIKVIYEGFAQKMVNPFPPTIWGYN-----YNIKPYEYDLKKAKELLKQAGY 382
Query: 385 VDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTD 444
NG K I T PK A IQA LAKIGI VKI E ++
Sbjct: 383 -----------PNGFK----TTIFTTSTRNPKGAVFIQASLAKIGIDVKIEVYEWGAYLK 427
Query: 445 LVSKGLHQMYL--FRYGLQDAQILLYMFHSKKGVKRM-----FFYRKD-LDEALDKMGTT 496
G H+M + + D LY SK+ + FY+ D + L K
Sbjct: 428 RTGLGEHEMAFAGWMADIADPDNFLYTLWSKQAASAIPTQNGSFYKSDAFSDLLIKAKRV 487
Query: 497 VDPEERQKYIEEAEKILIDGAPMVPL 522
D +ER+ +A++I+ AP VPL
Sbjct: 488 SDQKEREALYLKAQEIIHKDAPYVPL 513
>pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313396|gb|AAD07367.1| (AE000548) dipeptide ABC
transporter, periplasmic dipeptide-binding protein
(dppA) [Helicobacter pylori 26695]
Length = 549
Score = 166 bits (415), Expect = 8e-40
Identities = 154/506 (30%), Positives = 228/506 (44%), Gaps = 73/506 (14%)
Query: 53 VLVIGYTRDPDTLDPQKSTWVD--ITTGLVFATLINM--GTNGKIIPGLAESWEISEDGK 108
VLV D ++DP T + + TG ++ TL+ GT ++ P LA SW+IS DG
Sbjct: 48 VLVFARGADGSSMDPALVTDGESYVATGNIYDTLVQFRYGTT-EVEPALATSWDISPDGL 106
Query: 109 VITFHLRKGI---RDALGNP---ITAEDVKFVFDRLMNPETR--SPMAPLV-----LGP- 154
V TFHLRKG+ + N +A+DV F F+R M+ R SP A +G
Sbjct: 107 VYTFHLRKGVYFHQTKYWNKKVEFSAKDVLFSFERQMDKAKRYYSPGAKSYKYWEGMGMS 166
Query: 155 --LKEVKVIDDYTVQLIYKEPYGPALPFLAT--MPPLGIFSKEFYEKVGPV----QFGQT 206
+K ++ +DDYT++ GP PFLA M L I SK++ + + + +
Sbjct: 167 HIIKSIEALDDYTIRFTLN---GPEAPFLANLGMDFLSILSKDYADYLAQNNKKDELAKK 223
Query: 207 PAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPP-YIETIRFRIIKEPFTL 264
P GTGP+ W + I +N YW GP Y++ + R I T
Sbjct: 224 PIGTGPFKFFLWNKDEKIILLKNQDYW-------------GPKAYLDKVVVRTIPNSSTR 270
Query: 265 VSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAI 324
+ G I ++ + L PN+ + + + ++ N QK F++ VR AI
Sbjct: 271 ALALRTGEIMLMTGPNLNEVEQLEKVPNIVVDKSAGLLASWLSLNTQKKYFDNPLVRLAI 330
Query: 325 NMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGW 384
N AIN ++ IK EG A + P P++ GY+ Y + Y YD +KAK+LL +AG+
Sbjct: 331 NHAINADDYIKVLYEGFAQKMVNPFPPTIWGYN-----YNIKPYEYDLKKAKELLKQAGY 385
Query: 385 VDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTD 444
NG K I T PK A IQA LAKIGI VKI E ++
Sbjct: 386 -----------PNGFK----TTIFTTATRNPKGAVFIQASLAKIGIDVKIEVYEWGAYLK 430
Query: 445 LVSKGLHQMYL--FRYGLQDAQILLYMFHSKKGVKRM------FFYRKDLDEALDKMGTT 496
G H+M + + D LY S++ + F+ K+ L K
Sbjct: 431 RTGLGEHEMAFSGWMADIADPDNFLYTLWSEQAASAIPTQNHSFYKNKEFSNLLIKAKRV 490
Query: 497 VDPEERQKYIEEAEKILIDGAPMVPL 522
D +ER+ +A++I+ AP VPL
Sbjct: 491 SDQKEREALYLKAQEIIHKDAPYVPL 516
>gi|10955080 agaA [Agrobacterium tumefaciens] >gi|11277227|pir||T45529 agaA
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665705|gb|AAB88465.1| (AF242881) agaA
[Agrobacterium tumefaciens]
Length = 509
Score = 162 bits (405), Expect = 1e-38
Identities = 141/507 (27%), Positives = 231/507 (44%), Gaps = 43/507 (8%)
Query: 39 GTSPTETTAALKHKVLVIGYTRDPDTLDP--QKSTWVDITTGLVFATLINMGTNGKIIPG 96
G + TT+AL L G + +P TLD Q T + L+N G +GKI P
Sbjct: 12 GLTGLTTTSALAGGTLYFGLSGEPSTLDTVVQPGTSGRTVKLAIHRGLVNYGIDGKISPE 71
Query: 97 LAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLK 156
LAES+E+S D K TFHLR+ + G +T+ DVK +R+++P+ ++ L +
Sbjct: 72 LAESYEVSPDAKEFTFHLRQA-KFHDGTTVTSADVKASLERILDPKGKASFRN-ELSSIS 129
Query: 157 EVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVV 216
+++ D+ TV+L P + +LA P + + P G GP+
Sbjct: 130 KIETPDEKTVKLTLSTPSVAMIDYLAL--PESVIVPAAWLAKNADNPNAAPVGAGPFKFA 187
Query: 217 KWVRGAYIEYKR-NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHV 275
W RG I K+ + Y+K+ G P ++ + + + T V+ K+G++ +
Sbjct: 188 GWTRGREITVKKFDDYYKK-----------GKPDLDEVHYVFYSDENTRVNALKSGDVDI 236
Query: 276 LLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
+ VP + D+A P +++ + + FN + PF+ VRQAI A++R II
Sbjct: 237 IDYVPAKDAADIAKGPETQLLRNTGPFMG-LQFNTKFEPFSKPEVRQAIAYAVDRSAIIN 295
Query: 336 YALEGLAVPVHGPLVP-SMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILE 394
A GL P+ G +P GYS+ Y + + EKAK LLA+AG+
Sbjct: 296 TAFNGLGSPIFGIAIPKGYMGYSDAKANY----FSHHVEKAKALLAKAGY---------- 341
Query: 395 DKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMY 454
N F V + ++ A IQ++LAKIGIKVK+ + +S S G +
Sbjct: 342 ---PNGFEVRLLATSQYSFQQNTAIAIQSELAKIGIKVKLDLPDWASRMAKASTGDYDFT 398
Query: 455 LFRY--GLQDAQILLYMFHSKKGVKRM----FFYRKDLDEALDKMGTTVDPEERQKYIEE 508
+ + DA L ++ + R +F + +++ LDK TVD ER K +
Sbjct: 399 VMGSLGEITDADWLSNYYYGGDKLVRTNNSPYFNDQQINDLLDKGRATVDKAERVKIYDA 458
Query: 509 AEKILIDGAPMVPLYARKVFLAYRKDV 535
++ +P+V R+ A +K V
Sbjct: 459 FVDRALELSPLVYFMWREQNYAVKKGV 485
>pir||F81253 probable peptide ABC-transport system periplasmic peptide-binding
protein Cj1584c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969001|emb|CAB73572.1|
(AL139079) putative peptide ABC-transport system
periplasmic peptide-binding protein [Campylobacter
jejuni]
Length = 511
Score = 160 bits (400), Expect = 5e-38
Identities = 140/504 (27%), Positives = 223/504 (43%), Gaps = 48/504 (9%)
Query: 47 AALKHKVLVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISED 106
A + L+I + ++P S D LVF+ L N + P LA+SW+IS+D
Sbjct: 17 AKIPKDTLIIAVENEIARINPAYSEDHDAVINLVFSGLTRFDENMSLKPDLAKSWDISKD 76
Query: 107 GKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTV 166
G V LR + G +A+DVKF + NP+ S + + +K V++++ V
Sbjct: 77 GLVYDIFLRDDVLWHDGVKFSADDVKFSIEAFKNPKNNSSIY-VNFEDIKSVEILNPSHV 135
Query: 167 QLIYKEPYGPALPFLATMPPLGIFSKEFY--EKVGPVQFGQTPAGTGPYYVVKWVRGAYI 224
++ +PY L L+ +G+ K E + F Q P GTGPY VKW +G Y+
Sbjct: 136 KITLFKPYPAFLDALS----IGMLPKHLLENENLNTSSFNQNPIGTGPYKFVKWKKGEYV 191
Query: 225 EYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFY 284
E+K N ++ + P L + I +P +E K G I L +
Sbjct: 192 EFKANEHFYLDKVKTPRL-----------IIKHIFDPSIASAELKNGKIDAAL-IDVSLL 239
Query: 285 KDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVP 344
ND N ++ + FN D +VRQA+N A+++E I+K L A
Sbjct: 240 NIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVRQALNYAVDKESIVKNLLHDYAFV 299
Query: 345 VHGPLVPS-MNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIV 403
+ PL S N + K+ Y YDP+KA+ LL AG+ ++ DG E K+G
Sbjct: 300 ANHPLERSWANSKNFKI-------YKYDPKKAEDLLVSAGF-KKNKDGNFE-KDGKILEF 350
Query: 404 EMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSF------TDLVSKG------LH 451
E+W + + +A I+Q++ KIG+ K+ SF + L+ G H
Sbjct: 351 EIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYSKVDSFLIGWGSPLDPDFH 410
Query: 452 QMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEK 511
+F QD+ + + +G ++ K +D AL K T + EER+KY ++
Sbjct: 411 TFRVFE-SSQDSAL------NDEGWNFGHYHDKKVDIALQKARNTSNLEERKKYYKDFID 463
Query: 512 ILIDGAPMVPLYARKVFLAYRKDV 535
L + P + L L Y KD+
Sbjct: 464 ALYENPPFIFLAYLDFALVYNKDL 487
>pir||B82242 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein VC1091 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9655560|gb|AAF94250.1| (AE004190)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Vibrio cholerae]
Length = 543
Score = 159 bits (398), Expect = 8e-38
Identities = 143/530 (26%), Positives = 233/530 (42%), Gaps = 62/530 (11%)
Query: 24 IGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGL--VF 81
+G G T + T + T + LV G + +LDP K+ V + + +
Sbjct: 12 LGAGLAVATTSFTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPESNVIRDLL 71
Query: 82 ATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNP 141
L+N NG ++PG+AESWE + D K TFH+RK + + G+P+TA D + F R ++P
Sbjct: 72 EGLVNQDANGNVVPGVAESWETT-DNKTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDP 130
Query: 142 ETRSP----MAPLVLGPLKEV------------KVIDDYTV--QLIYKEPYGPALPFLAT 183
T SP M + KE+ K +DD+T+ +L PY + T
Sbjct: 131 ATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVPYFVMMMGHTT 190
Query: 184 MPPLGIFSKEFYEKVG-----PVQFGQTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYR 237
+ P+ K EK G P F G G Y + KWV +E KRNP YW
Sbjct: 191 VKPI---HKATVEKFGDQWTKPENF----VGNGAYVLDKWVVNERLELKRNPQYWDD--- 240
Query: 238 PDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIP 297
KN + + + I+ ++ F +G I + ++P E +K L + +
Sbjct: 241 -----KN---TVLNKVTYLPIENQVAEMNRFLSGEIQITNELPLEHFKRLKKEHPESVQV 292
Query: 298 ALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMN-GY 356
+ +Y GFN +K PF+D RVR+A++ AI+R +++ A+ G L P + G+
Sbjct: 293 QGQLCTYYYGFNNKKPPFDDVRVRKALSYAIDR-DVVSDAILGQGQKPAYFLTPEITAGF 351
Query: 357 SEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPK 416
S +M Y K +AK+LL EAG+ N + +T E K
Sbjct: 352 SPEMPAYGKMTQKERIAEAKKLLEEAGY-----------NKSNPLKFTLLYNTSE-NHKK 399
Query: 417 VAQIIQAQ-LAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRY--GLQDAQILLYMFHSK 473
+A IQ+ +G+ + + E ++ D +G + + +A L + S
Sbjct: 400 IATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLMLSS 459
Query: 474 KGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
++ + D ++K T+ EERQK +AEK+L P+ P+Y
Sbjct: 460 NTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIY 509
>sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR >gi|2126888|pir||I40545
oligopeptide ABC transporter (oligopeptide-binding
protein) appA - Bacillus subtilis
>gi|677945|gb|AAA62358.1| (U20909) AppA [Bacillus
subtilis] >gi|2633492|emb|CAB12995.1| (Z99110)
oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus subtilis]
Length = 543
Score = 157 bits (393), Expect = 3e-37
Identities = 134/509 (26%), Positives = 240/509 (46%), Gaps = 45/509 (8%)
Query: 54 LVIGYTRDPDTLDPQKSTWVDITT---GLVFATLINMGTNGKIIPGLAESWEISEDGKVI 110
LV+G +P + ST D +T ++++ L + LAES + + G
Sbjct: 47 LVVGSIGEPTLFNSLYST-DDASTDIENMLYSFLTKTDEKLNVKLSLAESIKELDGGLAY 105
Query: 111 TFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTV--QL 168
++KG++ G +TA+DV F + ++ + + LK V+ DY V +L
Sbjct: 106 DVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGS-TYEMLKSVEKKGDYEVLFKL 164
Query: 169 IYKEP--YGPALPFLATMP-------PLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWV 219
YK+ Y AL A +P P+ + + + P+ G+GP+ +W
Sbjct: 165 KYKDGNFYNNALDSTAILPKHILGNVPIADLEENEFNRKKPI-------GSGPFKFKEWK 217
Query: 220 RGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDV 279
+G YI+ + N + G PY++T+ +++I + ++ +AG+I+ +V
Sbjct: 218 QGQYIKLEANDDYFE-----------GRPYLDTVTYKVIPDANAAEAQLQAGDIN-FFNV 265
Query: 280 PPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALE 339
P YK N++++ L YIG+N + F D +VRQA+ A++RE I+ L+
Sbjct: 266 PATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKDKKVRQALTTALDRESIVSQVLD 325
Query: 340 GLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGN 399
G + P P Y + ++ K+ Y+ +KAKQ+LAEAGW D +GDGIL DK+G
Sbjct: 326 GDGEVAYIPESPLSWNYPKDIDV---PKFEYNEKKAKQMLAEAGWKDTNGDGIL-DKDGK 381
Query: 400 KFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVS--KGLHQMYLFR 457
KF + + G +A ++Q QL KIGI+VK + VE S+ + ++ +
Sbjct: 382 KFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVMG 441
Query: 458 YGLQDAQILLYMFHS---KKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILI 514
+ L +FHS KKG+ +++ + D+ + + D ++ K E+ + +
Sbjct: 442 WSLSTFPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSKEYEQIYQKIA 501
Query: 515 DGAPMVPLYARKVFLAYRKDVVEGIVINP 543
+ P LY +A ++ +EG +P
Sbjct: 502 EDQPYTFLYYPNNHMAMPEN-LEGYKYHP 529
>pir||G83083 probable binding protein component of ABC transporter PA4496
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950735|gb|AAG07884.1|AE004863_4 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 537
Score = 156 bits (390), Expect = 7e-37
Identities = 139/524 (26%), Positives = 225/524 (42%), Gaps = 65/524 (12%)
Query: 62 PDTLDPQKSTW---VDITTGLVFATLINMGTNG-KIIPGLAESWEISEDGKVITFHLRKG 117
P DP + T D VF L G K++PGLAESW++S+DGK TFHLRKG
Sbjct: 40 PAGFDPAQYTTGTDFDAAAETVFNRLTQFERGGTKVLPGLAESWDVSDDGKTYTFHLRKG 99
Query: 118 IRDALGN------PITAEDVKFVFDRLMNPETRSPMAPLVLGP----------LKEVKVI 161
++ + A+DV F F+R+++ + A P + V+ +
Sbjct: 100 VKFHSTDYFKPTREFNADDVLFTFERMLDKDHPFRKAYPTEFPYFTDMGLDKNIARVEKL 159
Query: 162 DDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKV----GPVQFGQTPAGTGPYYVVK 217
D++TV+ E + LA MP I S E+ ++ Q P GTGP+ +
Sbjct: 160 DEHTVKFTLNEVDAAFIQNLA-MPFPSIQSAEYAAQLLKQGKASDINQKPIGTGPFVFSR 218
Query: 218 WVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
+ + A I +K N YWK P ++ + F I + + KAG +
Sbjct: 219 YQKDAQIRFKGNKDYWK-----------PDEVKVDNLIFAINTDASVRAQKLKAGECQIT 267
Query: 277 LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
L+ P L DPN+ + + L YI +N PF+ VRQA++MA+N++ II
Sbjct: 268 LNPRPADLDALKKDPNLNLPSQAGFNLGYIAYNVTHKPFDKLEVRQALDMAVNKKAIIDA 327
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
+G + P+ Y E +++ PYDP KA++LL +AG +
Sbjct: 328 VYQGAGQLASNGMPPTQWSYDETIKD-----APYDPAKARELLKKAGVAE---------- 372
Query: 397 NGNKFIVEMWISTGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQ 452
G + + +W + A +A+++Q AKIGIK KI T E + G H
Sbjct: 373 -GTE--ITLWAMPVQRPYNPNAKLMAEMLQNDWAKIGIKAKIVTYEWGEYIKRAKGGEHD 429
Query: 453 MYLFRYGLQDAQI-----LLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIE 507
L + + LY + G + D+ + T D +R + +
Sbjct: 430 AMLIGWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCDAGYDKLVKDAKRTTDQGKRTELYK 489
Query: 508 EAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYLD 551
+A+ IL + P+ P+ V+ RK V I+P+ L+ + +
Sbjct: 490 QAQHILKEQVPITPIAHSTVYQPMRK-TVHDFRISPFGLNSFYE 532
>pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fragment)
>gi|1124957|emb|CAA63625.1| (X93084) orf4
[Methanosarcina barkeri] >gi|1587233|prf||2206350A ORF 4
[Methanosarcina barkeri]
Length = 529
Score = 156 bits (390), Expect = 7e-37
Identities = 137/553 (24%), Positives = 242/553 (42%), Gaps = 46/553 (8%)
Query: 5 IVKTLLVFALAAALVAAGCIG----GGTPTQTQTQTGTGTSP-TETTAALKHKVLVIGYT 59
++ L++ A L +GC G + + +G+ ++ ++ LV+G
Sbjct: 8 LIILLIILLTCAILTTSGCSSTEESGAKDAVSGMEVNSGSDDASQIEGGSENNTLVLGEM 67
Query: 60 RDPDTLDPQKSTWVDITT-GLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGI 118
+ +++DP + + TL+ + + PGLA SWE D F LR +
Sbjct: 68 WNIESIDPINGDGTLVCEKAAITETLVGANDDFSLKPGLATSWE-QLDENTWEFKLRNNV 126
Query: 119 RDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPAL 178
G+ +TAEDV F +++++ + +A ++ + ++++D+YT+++ KE P L
Sbjct: 127 TFHDGSKMTAEDVNFTLEKVISENAK--VASML--KIDSIEIVDNYTLKIKTKE-INPIL 181
Query: 179 PFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYI--EYKRNPYWKREY 236
P + P I S Y + G P GTGPY + + + K + +W E
Sbjct: 182 PGVLHYPDTAIISPSSYNENGEFV---KPVGTGPYKLESFDEQTRVLTVVKNDNWWGGEV 238
Query: 237 RPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMI 296
D + + I +P T + G + +DVP Y + ++ I
Sbjct: 239 GLDKMI------------LKGIPDPNTRAMAIENGEVDFTVDVP---YSETDRIDAIDGI 283
Query: 297 PALEYV---LHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSM 353
+Y ++ + N + P D RVRQA++ AI+R +I + L + GP +P+M
Sbjct: 284 NVEKYKTPRVYKLDLNLKHEPLEDVRVRQAMSYAIDRSDIAENVLYNVGEAAAGPFLPTM 343
Query: 354 NGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELE 413
++ ++ Y++ D EKA +LL AGWVD DGDGI DK+G + +
Sbjct: 344 VWANKSLKPYSQ-----DLEKADELLTAAGWVDTDGDGI-RDKDGQPLKFNLMTYSARPG 397
Query: 414 APKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGL---QDAQILLYMF 470
P +A+ + AQL + GI ++ +E S D G +YL Y + D + +L +
Sbjct: 398 LPPMAEAMAAQLREAGIGIETEVLEMGSIDDRRESGDWDLYLAAYNIAMVPDPEYILTNW 457
Query: 471 HSKKGVKRMFFY-RKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFL 529
+ G Y +D + + + ER K E E I D PM+ + A
Sbjct: 458 YMTNGTDNNAGYSNPKVDSLITEARKITNMSERYKKFNEVEAIAYDEQPMI-IVAYYGCA 516
Query: 530 AYRKDVVEGIVIN 542
+KD V+G V +
Sbjct: 517 IVKKDYVKGYVFD 529
>pir||B72289 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981698|gb|AAD36226.1|AE001772_5 (AE001772)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 503
Score = 152 bits (381), Expect = 8e-36
Identities = 138/522 (26%), Positives = 238/522 (45%), Gaps = 66/522 (12%)
Query: 43 TETTAALKHKVLVIGYTRDPDTLDP-------QKSTWVDITTGLVFATLINMGTNGKIIP 95
T T + ++V+G T TLDP + ++ GLV +GT+ + P
Sbjct: 14 TVTLSFAAKDIIVVGTTDKIRTLDPANCYDYFSSNILQNVMVGLVD---YEIGTS-VLKP 69
Query: 96 GLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPL 155
LAE WE+ E G V TF+LRK + G PI A K+ FDR+M + A L+ +
Sbjct: 70 VLAERWEVDETGTVYTFYLRKDAKFEDGTPIDAHVFKYSFDRVM--KLNGDPAFLLSDVV 127
Query: 156 KEVKVIDDYTVQLIYKEPYGPALPFLA-----TMPPLGIFSKEFYEKVGPVQFGQTPAGT 210
++ +V+DDYT ++ K P+ + L + P + FYE + P+ +
Sbjct: 128 EKTEVVDDYTFRVTLKYPFSAFVSVLGYTVAYPVNPKVYPADSFYEGI--------PSAS 179
Query: 211 GPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
GPY V +W+R I + NP + E P +TI + TL +
Sbjct: 180 GPYRVKEWIRDVRIVLEANPNYFGE-----------KPKTKTIVINFYENASTLRLALET 228
Query: 271 GNIHVLL-DVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAIN 329
G I V + P DL ++ + + Y+ N + PF++ +VRQA+ ++N
Sbjct: 229 GEIDVAYRHLDPRDVIDLEGREDIVVYKGNSPQIRYLVINVTQPPFDNVKVRQALAYSVN 288
Query: 330 REEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
R+ I++ GLA P++ + M G+ + E D EKA+ LL EAG+
Sbjct: 289 RDVIVEDVFVGLAKPLYSMIPEGMWGHKDVFPE-------RDLEKARALLKEAGY----- 336
Query: 390 DGILEDKNGNKFIVEMWIST---GELEAPKVAQIIQAQLAKIG-IKVKIRTVEESSFTDL 445
D+N N ++++W + G EA VAQ+++ + G IKV ++ E S++ +
Sbjct: 337 -----DEN-NPLVIDLWYTPSHYGTTEA-DVAQVLKESFEETGVIKVNLKYAEWSTYVEY 389
Query: 446 VSKGLHQMYLFRY--GLQDAQILLYMFHSKKGVKRM--FFYRKDLDEALDKMGTTVDPEE 501
G ++L + D ++ F S+ G K + F+ +++ + + D E+
Sbjct: 390 FLNGTMGLFLLGWYPDYLDPDDYVWPFLSESGAKSLGSFYSNPEVENLMIEARKLTDLEK 449
Query: 502 RQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
R + + ++IL P +PL+ A +K V+GI++ P
Sbjct: 450 RTEIYYKVQEILARDVPYIPLWQGVATCAAKKQ-VKGILLEP 490
>dbj|BAB04066.1| (AP001508) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 516
Score = 152 bits (380), Expect = 1e-35
Identities = 138/515 (26%), Positives = 231/515 (44%), Gaps = 41/515 (7%)
Query: 14 LAAALVAAGCIGGGTPTQTQTQTGTGTSPTETT-AALKHKVLVIGYTRDPDTLDPQKSTW 72
+A L+ GC G Q + G+ S T++ A + + IG + +T
Sbjct: 8 VAVVLLLVGCGGN------QDEVGSSESETDSNDEADRTLTIAIGTDIVSFDIHDHNNTS 61
Query: 73 VDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVK 132
+ +F L N I P L E++E S D + + L++G+ G+P+T+EDVK
Sbjct: 62 TEAVHDNMFNYLFKRDENNVIQPELVETFE-SIDDRTVEMTLKEGVTFHNGDPLTSEDVK 120
Query: 133 FVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSK 192
F +R+ +T +KEV++ D+ T ++I EP P+L + GI K
Sbjct: 121 FTLERVATDDTLQEYPNYK--QIKEVEIKDELTFRVITHEPE-PSLFHRLSRLGSGILPK 177
Query: 193 EFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIET 252
+ E+ G F P GTGPY +WVR + I PY + + + E
Sbjct: 178 TYIEEEGWDHFLANPVGTGPYQFKEWVRDSKIVL--TPY-------ENYFEGAVDEWDEV 228
Query: 253 IRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEM-IPALEYVLHYIGFNCQ 311
+ FR+I E T V+E G + +++P ++ + + M + I +
Sbjct: 229 V-FRVIPENSTRVAELLTGGADIAVNIPSADWERVEENEGTSMKTETSNRTIMLILRATE 287
Query: 312 KYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYD 371
YP D RVRQA+++AI+ + I + L G +P + P G EE Y YD
Sbjct: 288 GYPTADVRVRQALDLAIDNKAITENVLRGGGIPTKTRVAPGNFG----AEESLYNTYDYD 343
Query: 372 PEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIK 431
EKAKQLL EAG+ D + L +G L+ +VA++I L I ++
Sbjct: 344 VEKAKQLLKEAGYPD-GFEMTLHSPHGR-----------YLQDAEVAEMIAGMLQAINVE 391
Query: 432 VKIRTVEESSFTDLVSKGLHQ-MYLFRYG--LQDAQILLYMFHSKKGVKRMFFYRKDLDE 488
V++ +E S+F ++ G ++ YL G + D + S + V + +++D
Sbjct: 392 VRLEFMEWSNFVEMRQAGENKDAYLIGLGNSMFDGAYSVDWHRSDRFVGETDYKNEEIDA 451
Query: 489 ALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
L+ +D EER K I+E ++I + P + L+
Sbjct: 452 LLEASAVNMDEEERAKQIQEIQRIAAEEVPHIMLH 486
>pir||C83084 probable binding protein component of ABC transporter PA4500
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950739|gb|AAG07888.1|AE004863_8 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 533
Score = 150 bits (375), Expect = 4e-35
Identities = 138/522 (26%), Positives = 224/522 (42%), Gaps = 65/522 (12%)
Query: 62 PDTLDPQKSTW---VDITTGLVFATLINMGTNG-KIIPGLAESWEISEDGKVITFHLRKG 117
P DP + T D T+ +F L+ G + IP LAESW+I +DGK TFHLRKG
Sbjct: 36 PAGFDPAQYTTGTDYDATSVTLFNRLVQFERGGTRAIPALAESWDIGDDGKTYTFHLRKG 95
Query: 118 IRDALGN------PITAEDVKFVFDRLMNPETRSPMAPLVLGP----------LKEVKVI 161
++ + A+DV F F R+++ A P + V+ +
Sbjct: 96 VKFHSTDYFKPTREFNADDVLFTFQRMLDKNHPFRKAYPTEFPYFTDMGLDKNIARVEKL 155
Query: 162 DDYTVQLIYKEPYGPALPFLATMPPLGIFSKEF----YEKVGPVQFGQTPAGTGPYYVVK 217
D++ V+ E + LA M I S E+ E P Q Q P GTGP+ + +
Sbjct: 156 DEHRVKFTLNEVDAAFIQNLA-MDVASIQSAEYAGQLLEAGKPQQINQKPIGTGPFILSR 214
Query: 218 WVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
+ + A I +K N YWK P I+ + F I + + KAG +
Sbjct: 215 YQKDAQIRFKGNKDYWK-----------PEDVKIDNLIFSINTDAAVRAQKLKAGECQIT 263
Query: 277 LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
L+ P K L N+++ + L YI +N PF+ VRQA++MA+N++ II
Sbjct: 264 LNPRPADLKALQEAANLKVPSQPGFNLGYIAYNVTHKPFDQLEVRQALDMAVNKQAIIDA 323
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
+G + P+ Y E +++ P+DP KA++LL +AG +
Sbjct: 324 VYQGAGQLAVNGMPPTQWSYDETIKD-----APFDPAKARELLKKAGVAE---------- 368
Query: 397 NGNKFIVEMWISTGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQ 452
G + + +W + A +A++IQA AKIGIK +I + E + G H
Sbjct: 369 -GTE--ITLWAMPVQRPYNPNAKLMAEMIQADWAKIGIKARIVSYEWGEYIKRAHAGEHD 425
Query: 453 MYLFRYGLQDAQ-----ILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIE 507
LF + + LY S G + D+ + D ++R + +
Sbjct: 426 AMLFGWTGDNGDPDNWLATLYGCDSINGNNVSKWCDAAYDKLVKAAKRVSDQDKRSELYK 485
Query: 508 EAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+A+ IL + P+ P+ V+ K V G I+P++ + +
Sbjct: 486 QAQHILKEQVPITPIAHSTVYQPMSKS-VHGFKISPFSRNAF 526
>pir||E72451 probable transport system binding protein APE2257 - Aeropyrum
pernix (strain K1) >gi|5105958|dbj|BAA81269.1|
(AP000064) 515aa long hypothetical transport system
binding protein [Aeropyrum pernix]
Length = 515
Score = 150 bits (374), Expect = 5e-35
Identities = 143/517 (27%), Positives = 235/517 (44%), Gaps = 51/517 (9%)
Query: 53 VLVIGYTRDPDTLDPQKS----TWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGK 108
V+VIG T D LDP S TW ++ V A L+ G I+P LAE WE E GK
Sbjct: 35 VIVIGTTDDVTELDPATSYDFFTWEVLSN--VMAGLVTYDQQGNIVPYLAERWESQEGGK 92
Query: 109 VITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQL 168
V F+LR+ + G P A+ V R+M + + LV ++ V+ +D +TV+
Sbjct: 93 VWIFYLRQDAKFPDGTPCDADVVVRSIKRVMT--IQGDPSWLVTEFVENVEALDQWTVKF 150
Query: 169 IYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKR 228
K+P G L +AT P + ++ P T G GPY + ++VR Y+ K
Sbjct: 151 TLKQPTGYFLAVVATPPYYPVHPNYPEDQPAP---DATWGGCGPYMIDEFVRDQYLRLKP 207
Query: 229 NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL-LDVPPEFYKDL 287
NP + + +P KN G + R + L S +AG I V + P +DL
Sbjct: 208 NPNF---FGEEP--KNDG------VIIRFYEGSEDLRSALEAGEIDVAWRTLNPSDLEDL 256
Query: 288 -ANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVH 346
+ N++ +P L + Y+ + P ++ VRQA+ AI+R++I+ G P++
Sbjct: 257 RSKGYNIKEVPGL--FIRYLVLRVSQPPLDNVAVRQALAAAIDRQDIVDRVFRGTMEPLY 314
Query: 347 GPLVPSMNGYSEKMEEYAKQKYPYDP--EKAKQLLAEAGWVDRDGDGILEDKNGNKFIVE 404
+ M G+ K+KY P + A+QLL++AG+ NK VE
Sbjct: 315 SMVPSGMWGHYPAF----KEKYGEGPNIDLARQLLSQAGY-----------SESNKLQVE 359
Query: 405 MWIST---GELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLF----R 457
+W + G+ EA A I + A I V+I++ E ++ D +S G + L
Sbjct: 360 LWYTPEHYGDTEAALAAVIKEQWEATGMISVEIKSSEWGTYVDQLSSGQMMISLLGWYPD 419
Query: 458 YGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGA 517
Y D + ++ + + +D+ L K T+ D ER + ++ ++IL + A
Sbjct: 420 YLDPDNFLTPFLLSTANSWTGTGYANPQVDDLLRKAMTSSDMNERAQLYKQVQEILAEEA 479
Query: 518 PMVPLYARKVFLAYRKDVVEGIVINPYTLDVYLDDAK 554
P +PL K+F+ +V I ++P +Y +K
Sbjct: 480 PFIPLVQGKLFVVTSTEVT-SIEVSPLQFLIYSSISK 515
>gb|AAB34223.1| (S75873) 60 kda antigen [Borrelia coriaceae]
Length = 514
Score = 149 bits (373), Expect = 7e-35
Identities = 144/500 (28%), Positives = 229/500 (45%), Gaps = 58/500 (11%)
Query: 61 DPDTLDPQKSTWVDITTGLV--FATLINMGTN-GKIIPGLAESWEISEDGKVITFHLRKG 117
+PD++DPQ +T + ++ F+ L T G PGLA+SW+IS++G V TFHLR+G
Sbjct: 37 EPDSIDPQLATSIQSLNVIINTFSGLTTRNTQTGGYKPGLAQSWDISDNGLVYTFHLREG 96
Query: 118 IRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VKVID 162
I + G PITAE ++ + R++N ET S +V +K +K ID
Sbjct: 97 IIWSDGVPITAEGIRRSYLRVLNKETGSQYVDIVKSTIKNAKDYFEGKIPESELGIKTID 156
Query: 163 DYTVQLIYKEPYGPALPFLA--TMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVR 220
D T+++ P L LA T P+ + + E Y K A T P +V V
Sbjct: 157 DSTLEITLVAPKPYFLDMLAHQTFIPVPVHAIEQYGK----------AWTNPENIV--VS 204
Query: 221 GAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVP 280
GAY R P K + N I+ + F + + T + + + L V
Sbjct: 205 GAYKLKTRIPNEKIVLEKNDKYYNASNVEIDEVIFYHV-QGNTAYNMYINDEVDFLTKVA 263
Query: 281 PEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEG 340
E Y D A N + VL Y+ FN P ++ +VR+A+ +AI+RE + K L+G
Sbjct: 264 SE-YLDEARIRNDYYSHPINRVL-YMAFNTTIKPLDNVKVREALTLAIDREALNKIHLKG 321
Query: 341 LAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNK 400
+ P L P + YS Y KQ +DP++A+QLLAEAG+ + G L+ K +
Sbjct: 322 QSKPTRN-LTPQFDHYS-----YGKQLKLFDPQRAQQLLAEAGYPNGAGFPTLKYKTSQR 375
Query: 401 FIVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIRTVEESSFTDLVSKGLHQMYLFRYG 459
+ + A+ +Q QL KI I ++I E ++F S G +QM +
Sbjct: 376 NGMAI-----------TAEFLQEQLKKILNINIEIEIEEWNTFLSSRSTGNYQMSFMGWT 424
Query: 460 LQDAQILLYM----FHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILI- 514
L ++ +G + K D +++ DP +RQ+ + +AE I++
Sbjct: 425 GDYPDPLTFLESLFTTENQGFGAYGYSNKKYDNLIEQSNFIKDPIQRQEILRQAEAIIVE 484
Query: 515 DGAPMVPLYARKVFLAYRKD 534
+ P+ PL K + +R D
Sbjct: 485 EDFPVAPLSILKSYYLFRHD 504
>dbj|BAA15142.1| (D90789) Periplasmic dipeptide transport protein precursor
(Dipeptide-binding protein) (DBP). [Escherichia coli]
>gi|1742438|dbj|BAA15152.1| (D90790) Periplasmic
dipeptide transport protein precursor (Dipeptide-binding
protein) (DBP). [Escherichia coli]
Length = 562
Score = 145 bits (363), Expect = 1e-33
Identities = 143/526 (27%), Positives = 231/526 (43%), Gaps = 64/526 (12%)
Query: 47 AALKHKVLVIGYTRDPDTLDP----QKSTWVDITTGLVFATLINMGTNGK-----IIPGL 97
AA+ +LVIG DP TLDP + W T + L+ T+G + L
Sbjct: 71 AAVPKDMLVIGKAADPQTLDPAVTIDNNDWT--VTYPSYQRLVQYKTDGDKGSTDVEGDL 128
Query: 98 AESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE 157
A SW+ S+D K TF L+ + A G P+TAE VK F+RL+ + P P K+
Sbjct: 129 ASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLL----KIGQGPAEAFP-KD 183
Query: 158 VKV--IDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFG---QTPAGTGP 212
+K+ D++TV+ +P+ P L LA I E G Q AG+GP
Sbjct: 184 LKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGP 243
Query: 213 YYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPG-PPYIETIRFRIIKEPFTLVSEFKAG 271
+ + W +G + NP++ PG P + + +II E + + G
Sbjct: 244 FMLKSWQKGQQLVLVPNPHY------------PGNKPNFKRVSVKIIGESASRRLQLSRG 291
Query: 272 NIHVLLDVPPEFYKDL--ANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAIN 329
+I + +P + L N NV P+L + Y+ N K P N +R+AI+ + +
Sbjct: 292 DIDIADALPVDQLNALKQENKVNVAEYPSLR--VTYLYLNNSKAPLNQADLRRAISWSTD 349
Query: 330 REEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
+ ++ L G + GP+ M GY + +Y +D KAK A W
Sbjct: 350 YQGMVNGILSGNGKQMRGPIPEGMWGY-----DATAMQYNHDETKAK-----AEW----- 394
Query: 390 DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKG 449
D + F+ S + +A Q+ L K+GI VK+ + ++ D V KG
Sbjct: 395 DKVTSKPTSLTFL----YSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKG 450
Query: 450 LHQMYLFRYGLQDAQILLYMFH----SKKGV--KRMFFYRKDLDEALDKMGTTVDPEERQ 503
+ + + + A ++M + KKG+ R F+ ++D+ L T D +R
Sbjct: 451 DYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRT 510
Query: 504 KYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+ ++A+KI+ID A V L+ + LA K+ V+G V NP V+
Sbjct: 511 RDYQQAQKIVIDDAAYVYLFQKNYQLAMNKE-VKGFVFNPMLEQVF 555
>sp|P76128|YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS PRECURSOR >gi|7442325|pir||B64902
probable oligopeptide-binding periplasmic protein b1487
precursor - Escherichia coli >gi|1787762|gb|AAC74560.1|
(AE000245) putative hemin-binding lipoprotein
[Escherichia coli K12]
Length = 516
Score = 145 bits (363), Expect = 1e-33
Identities = 143/526 (27%), Positives = 231/526 (43%), Gaps = 64/526 (12%)
Query: 47 AALKHKVLVIGYTRDPDTLDP----QKSTWVDITTGLVFATLINMGTNGK-----IIPGL 97
AA+ +LVIG DP TLDP + W T + L+ T+G + L
Sbjct: 25 AAVPKDMLVIGKAADPQTLDPAVTIDNNDWT--VTYPSYQRLVQYKTDGDKGSTDVEGDL 82
Query: 98 AESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE 157
A SW+ S+D K TF L+ + A G P+TAE VK F+RL+ + P P K+
Sbjct: 83 ASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLL----KIGQGPAEAFP-KD 137
Query: 158 VKV--IDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFG---QTPAGTGP 212
+K+ D++TV+ +P+ P L LA I E G Q AG+GP
Sbjct: 138 LKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGP 197
Query: 213 YYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPG-PPYIETIRFRIIKEPFTLVSEFKAG 271
+ + W +G + NP++ PG P + + +II E + + G
Sbjct: 198 FMLKSWQKGQQLVLVPNPHY------------PGNKPNFKRVSVKIIGESASRRLQLSRG 245
Query: 272 NIHVLLDVPPEFYKDL--ANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAIN 329
+I + +P + L N NV P+L + Y+ N K P N +R+AI+ + +
Sbjct: 246 DIDIADALPVDQLNALKQENKVNVAEYPSLR--VTYLYLNNSKAPLNQADLRRAISWSTD 303
Query: 330 REEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
+ ++ L G + GP+ M GY + +Y +D KAK A W
Sbjct: 304 YQGMVNGILSGNGKQMRGPIPEGMWGY-----DATAMQYNHDETKAK-----AEW----- 348
Query: 390 DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKG 449
D + F+ S + +A Q+ L K+GI VK+ + ++ D V KG
Sbjct: 349 DKVTSKPTSLTFL----YSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKG 404
Query: 450 LHQMYLFRYGLQDAQILLYMFH----SKKGV--KRMFFYRKDLDEALDKMGTTVDPEERQ 503
+ + + + A ++M + KKG+ R F+ ++D+ L T D +R
Sbjct: 405 DYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRT 464
Query: 504 KYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+ ++A+KI+ID A V L+ + LA K+ V+G V NP V+
Sbjct: 465 RDYQQAQKIVIDDAAYVYLFQKNYQLAMNKE-VKGFVFNPMLEQVF 509
>pir||G70140 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-1) homolog - Lyme disease spirochete
>gi|2688228|gb|AAC66708.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-1) [Borrelia burgdorferi]
Length = 529
Score = 145 bits (361), Expect = 2e-33
Identities = 157/546 (28%), Positives = 237/546 (42%), Gaps = 82/546 (15%)
Query: 48 ALKHKVLV-IGYTRDPDTLDPQKSTWV---DITTGLVFATLINMGTNGKIIPGLAESWEI 103
A K K++ + +P +LDPQ ST + +I T L + GK PGLA+SW I
Sbjct: 28 AKKEKIVFRVSNLSEPSSLDPQLSTDLYGSNIITNLFLGLAVKDSQTGKYKPGLAKSWNI 87
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE------ 157
SEDG + TF+LR+ I + G ITAE++K + R++N +T + A L+ +K
Sbjct: 88 SEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKTAAMYANLIKSTIKNAQEYFD 147
Query: 158 ---------VKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPA 208
+K ID T+++ P P P + T EK G
Sbjct: 148 ETVPESELGIKAIDSKTLEITLTSPK-PYFPDMLTHSAYIPVPMHIVEKYGE-------N 199
Query: 209 GTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEF 268
T P +V V GAY +R+ K + N I+ + F E + +
Sbjct: 200 WTNPENIV--VSGAYKLKERSINDKIVIEKNEKYYNAKNVEIDEVIF-YPTEGSVAYNMY 256
Query: 269 KAGNIHVL----------LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDT 318
G + L + + ++Y L N + YI FN P ++
Sbjct: 257 INGELDFLQGAEKNNLEEIKIRDDYYSGLKNG------------MAYIAFNTTIKPLDNL 304
Query: 319 RVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQL 378
+VRQAI++AI+RE + K L+G + P L P + YS Y K +DPE AK+L
Sbjct: 305 KVRQAISLAIDRETLTKVVLKGSSDPTRN-LTPKFDDYS-----YGKNLILFDPENAKKL 358
Query: 379 LAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIRTV 437
LAEAG+ D G L+ K IS G P A+ +Q Q KI I ++I
Sbjct: 359 LAEAGYPDGKGFPTLKYK----------ISEGR---PTTAEFLQEQFKKILNINLEIENE 405
Query: 438 EESSFTDLVSKGLHQM----YLFRYGLQDAQILLYMFHSKKGVKRMFFY-RKDLDEALDK 492
E ++F G +QM ++ Y L +F ++ + Y K+ D + K
Sbjct: 406 EWTTFLGSRRTGNYQMSSVGWIGDY-FDPLTFLDSLFTTENHFLGAYKYSNKEYDALIKK 464
Query: 493 MGTTVDPEERQKYIEEAEKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYL- 550
+DP +RQ + +AE+I+ + PM PLY K +R D G V P + YL
Sbjct: 465 SNFELDPIKRQDILRQAEEIIAEKDFPMAPLYIPKSHYLFRNDKWTGWV--PNIAESYLY 522
Query: 551 DDAKLK 556
+D K K
Sbjct: 523 EDIKTK 528
>gb|AAC34990.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 523
Score = 144 bits (359), Expect = 3e-33
Identities = 157/546 (28%), Positives = 237/546 (42%), Gaps = 82/546 (15%)
Query: 48 ALKHKVLV-IGYTRDPDTLDPQKSTWV---DITTGLVFATLINMGTNGKIIPGLAESWEI 103
A K K++ + +P +LDPQ ST + +I T L + GK PGLA+SW I
Sbjct: 22 AKKEKIVFRVSNLSEPSSLDPQLSTDLYGSNIITNLFLGLAVKDSQTGKYKPGLAKSWNI 81
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE------ 157
SEDG + TF+LR+ I + G ITAE++K + R++N +T + A L+ +K
Sbjct: 82 SEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKTAAMYANLIKSTIKNAQEYFD 141
Query: 158 ---------VKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPA 208
+K ID T+++ P P P + T EK G
Sbjct: 142 ETVPESELGIKAIDSKTLEITLTSPK-PYFPDMLTHSAYIPVPMHIVEKYGE-------N 193
Query: 209 GTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEF 268
T P +V V GAY +R+ K + N I+ + F E + +
Sbjct: 194 WTNPENIV--VSGAYKLKERSINDKIVIEKNEKYYNAKNVEIDEVIF-YPTEGSVAYNMY 250
Query: 269 KAGNIHVL----------LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDT 318
G + L + + ++Y L N + YI FN P ++
Sbjct: 251 INGELDFLQGAEKNNLEEIKIRDDYYSGLKNG------------MAYIAFNTTIKPLDNL 298
Query: 319 RVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQL 378
+VRQAI++AI+RE + K L+G + P L P + YS Y K +DPE AK+L
Sbjct: 299 KVRQAISLAIDRETLTKVVLKGSSDPTRN-LTPKFDDYS-----YGKNLILFDPENAKKL 352
Query: 379 LAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIRTV 437
LAEAG+ D G L+ K IS G P A+ +Q Q KI I ++I
Sbjct: 353 LAEAGYPDGKGFPTLKYK----------ISEGR---PITAEFLQEQFKKILNINLEIENE 399
Query: 438 EESSFTDLVSKGLHQM----YLFRYGLQDAQILLYMFHSKKGVKRMFFY-RKDLDEALDK 492
E ++F G +QM ++ Y L +F ++ + Y K+ D + K
Sbjct: 400 EWTTFLGSRRTGNYQMSSVGWIGDY-FDPLTFLDSLFTTENHFLGAYKYSNKEYDALIKK 458
Query: 493 MGTTVDPEERQKYIEEAEKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYL- 550
+DP +RQ + +AE+I+ + PM PLY K +R D G V P + YL
Sbjct: 459 SNFELDPIKRQDILRQAEEIIAEKDFPMAPLYIPKSHYLFRNDKWTGWV--PNIAESYLY 516
Query: 551 DDAKLK 556
+D K K
Sbjct: 517 EDIKTK 522
>gb|AAB97671.1| (AF005657) plasminogen binding protein [Borrelia burgdorferi]
Length = 523
Score = 143 bits (357), Expect = 5e-33
Identities = 157/546 (28%), Positives = 236/546 (42%), Gaps = 82/546 (15%)
Query: 48 ALKHKVLV-IGYTRDPDTLDPQKSTWV---DITTGLVFATLINMGTNGKIIPGLAESWEI 103
A K K++ + +P +LDPQ ST + +I T L GK PGLA+SW I
Sbjct: 22 AKKEKIVFRVSNLSEPSSLDPQLSTDLYGSNIITNLFLGLAAKDSQTGKYKPGLAKSWNI 81
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE------ 157
SEDG + TF+LR+ I + G ITAE++K + R++N +T + A L+ +K
Sbjct: 82 SEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKTAAMYANLIKSTIKNAQEYFD 141
Query: 158 ---------VKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPA 208
+K ID T+++ P P P + T EK G
Sbjct: 142 ETVPESELGIKAIDSKTLEITLTSPK-PYFPDMLTHSAYIPVPMHIVEKYGE-------N 193
Query: 209 GTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEF 268
T P +V V GAY +R+ K + N I+ + F E + +
Sbjct: 194 WTNPENIV--VSGAYKLKERSINDKIVIEKNEKYYNAKNVEIDEVIF-YPTEGSVAYNMY 250
Query: 269 KAGNIHVL----------LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDT 318
G + L + + ++Y L N + YI FN P ++
Sbjct: 251 INGELDFLQGAEKNNLEEIKIRDDYYSGLKNG------------MAYIAFNTTIKPLDNL 298
Query: 319 RVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQL 378
+VRQAI++AI+RE + K L+G + P L P + YS Y K +DPE AK+L
Sbjct: 299 KVRQAISLAIDRETLTKVVLKGSSDPTRN-LTPKFDDYS-----YGKNLILFDPENAKKL 352
Query: 379 LAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIRTV 437
LAEAG+ D G L+ K IS G P A+ +Q Q KI I ++I
Sbjct: 353 LAEAGYPDGKGFPTLKFK----------ISEGR---PTTAEFLQEQFKKILNINLEIENE 399
Query: 438 EESSFTDLVSKGLHQM----YLFRYGLQDAQILLYMFHSKKGVKRMFFY-RKDLDEALDK 492
E ++F G +QM ++ Y L +F ++ + Y K+ D + K
Sbjct: 400 EWTTFLGSRRTGNYQMSSVGWIGDY-FDPLTFLDSLFTTENHFLGAYKYSNKEYDALIKK 458
Query: 493 MGTTVDPEERQKYIEEAEKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYL- 550
+DP +RQ + +AE+I+ + PM PLY K +R D G V P + YL
Sbjct: 459 SNFELDPIKRQDILRQAEEIIAEKDFPMAPLYIPKSHYLFRNDKWTGWV--PNIAESYLY 516
Query: 551 DDAKLK 556
+D K K
Sbjct: 517 EDIKTK 522
>gb|AAC46282.1| (AF000366) oligopeptide permease homolog AI [Borrelia burgdorferi]
Length = 523
Score = 143 bits (357), Expect = 5e-33
Identities = 157/548 (28%), Positives = 242/548 (43%), Gaps = 86/548 (15%)
Query: 48 ALKHKVLV-IGYTRDPDTLDPQKST---WVDITTGLVFATLINMGTNGKIIPGLAESWEI 103
A K K++ + +P +LDPQ ST +I T L + GK PGLA+SW I
Sbjct: 22 AKKEKIVFRVSNLSEPSSLDPQLSTDPYGSNIITNLFLGLAVKDSQTGKYKPGLAKSWNI 81
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE------ 157
SEDG + TF+LR+ I + G ITAE++K + R++N +T + A L+ +K
Sbjct: 82 SEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKTAAMYANLIKSTIKNAQEYFD 141
Query: 158 ---------VKVIDDYTVQ--LIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQT 206
+K ID T++ L +PY P + + P+ + E Q+G+
Sbjct: 142 ETVPESELGIKAIDSKTLEITLTSPKPYFPDMLTHSAYIPVPMHIVE--------QYGEN 193
Query: 207 PAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVS 266
T P +V V GAY +R+ K + N I+ + F E +
Sbjct: 194 --WTNPENIV--VSGAYKLKERSINDKIVIEKNEKYYNAKNVEIDEVIF-YPTEGSVAYN 248
Query: 267 EFKAGNIHVL----------LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFN 316
+ G + L + + ++Y L N + YI FN P +
Sbjct: 249 MYINGELDFLQGAEKNNLEEIKIRDDYYSGLKNG------------MAYIAFNTTIKPLD 296
Query: 317 DTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAK 376
+ +VRQAI++AI+RE + K L+G + P L P + YS Y K +DPE AK
Sbjct: 297 NLKVRQAISLAIDRETLTKVVLKGSSDPTRN-LTPKFDDYS-----YGKNLILFDPENAK 350
Query: 377 QLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIR 435
+LLAEAG+ D G L+ K IS G P A+ +Q Q KI I ++I
Sbjct: 351 KLLAEAGYPDGKGFPTLKYK----------ISEGR---PTTAEFLQEQFKKILNINLEIE 397
Query: 436 TVEESSFTDLVSKGLHQM----YLFRYGLQDAQILLYMFHSKKGVKRMFFY-RKDLDEAL 490
E ++F G +QM ++ Y L +F ++ + Y K+ D +
Sbjct: 398 NEEWTTFLGSRRTGNYQMSSVGWIGDY-FNPLTFLDSLFTTENHFLGAYKYSNKEYDALI 456
Query: 491 DKMGTTVDPEERQKYIEEAEKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
K +DP +R+ + +AE+I+ + PM PLY K +R D G V P + Y
Sbjct: 457 KKSNFELDPIKRRDILRQAEEIIAEKDFPMAPLYIPKSHYLFRNDKWTGWV--PNIAESY 514
Query: 550 L-DDAKLK 556
L +D K K
Sbjct: 515 LYEDIKTK 522
>dbj|BAA94699.1| (AB026907) dipeptide transporter DppA homolog [Ochrobactrum
anthropi]
Length = 508
Score = 142 bits (355), Expect = 9e-33
Identities = 121/441 (27%), Positives = 201/441 (45%), Gaps = 37/441 (8%)
Query: 83 TLINMGTNGK-IIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNP 141
+LI+ +G + PGLA+SW++++D + LR GI+ + G P+T +DV F + +P
Sbjct: 60 SLISADASGAGLEPGLAQSWKVADDALSVDLVLRDGIKFSTGTPVTVDDVIFSLQKAADP 119
Query: 142 ETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPV 201
+ A P+K + IDD TV+L K PY AL ++ I SK YEK P
Sbjct: 120 QGSFGFA---FEPIKSIDKIDDKTVRLTLKHPYS-ALESALSLYAASIVSKADYEK-DPS 174
Query: 202 QFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEP 261
FG P TGP+ V + RG N Y+ R+ AL PY++ + + + E
Sbjct: 175 AFGSNPVCTGPFKVESYERGTQAVLVPNTYYWRQGEDGKAL-----PYLDEVILKYVPES 229
Query: 262 FTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVR 321
+ + + G++ V L VP + + + + + + L Y+ N K P +D R
Sbjct: 230 NSRILGLQNGDVDVSLAVPLNQAEAIKAIDGISLEVSPSFRLDYVFLNHAKKPLDDKNFR 289
Query: 322 QAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAE 381
A+N A NRE I+K G + +P + +S+K+ + P+D EK+KQL +
Sbjct: 290 LALNYAANREAILKAVYFGYG-EIPNSYMPKVTYWSDKV-----ARIPFDIEKSKQLAKD 343
Query: 382 AGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESS 441
+G+ DG I ++ + TG +A I+Q + GI+ +I + +
Sbjct: 344 SGY---DGAPI-----------QIMVDTGNTSFRTIAAILQQGWKQAGIESEIVEYDVGT 389
Query: 442 FTDLVSKGLHQMYL--FRYGLQDAQILLYMFHSKKGVKRMFF--YRKD-LDEALDKMGTT 496
+ KG +Q Y+ + D L + G FF Y+ D + L + T
Sbjct: 390 AFSMSEKGDYQAYVSYITSDISDDDELASIQADGTGPTAAFFSNYKNDEVTRLLAEARQT 449
Query: 497 VDPEER-QKYIEEAEKILIDG 516
D +R + Y + E + DG
Sbjct: 450 ADKAKRAELYAKVQETVYHDG 470
>pir||A82356 peptide ABC transporter, periplasmic peptide-binding protein VC0171
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9654574|gb|AAF93347.1| (AE004107) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 542
Score = 141 bits (351), Expect = 3e-32
Identities = 139/530 (26%), Positives = 236/530 (44%), Gaps = 68/530 (12%)
Query: 54 LVIGYTRDPDTLDP--QKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVIT 111
+ + Y DP ++DP Q S + +VF LI + P LAESW+ D + +
Sbjct: 50 ITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQ-RVDNETMR 108
Query: 112 FHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYK 171
F LRKG++ GN TA+DV + F+RL S + PL + +DDYT+++
Sbjct: 109 FTLRKGVKFHSGNDFTADDVVWTFNRL----KESADFKGIFEPLVSLTKVDDYTIEIKTA 164
Query: 172 EPYGPALPFLATMPPLGIFSKEFY--------EKVGPVQFGQTPA-----GTGPYYVVKW 218
Y P + +AT + +FY K V+ G + A GTGP+ V
Sbjct: 165 GTY-PLIENVATY--IFPMDSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAR 221
Query: 219 VRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
+G +E++RNP YW D A K ++ + +IKE T V+ +G + ++
Sbjct: 222 EQGVKLEFQRNPNYW------DKASKG----NVDKLTLAVIKEDATRVAALLSGGVDMIA 271
Query: 278 DVPPEFYKDLANDPNVEM--IPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
V P Y+ + + V++ +P + + N D RVRQAI AIN E I+
Sbjct: 272 PVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNP-ALKDVRVRQAIVYAINNEGIVD 330
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
++G A GY+E + K +D KAK+L+ EAG+ G +
Sbjct: 331 KVMKGAATTAAQQSPVGYAGYNENL------KPRFDLNKAKELMKEAGY--EKGFNLTMI 382
Query: 396 KNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSF--------TDLVS 447
N+++ + K+AQ A L+KIGIKV ++T+ ++ + D++
Sbjct: 383 APNNRYVND----------EKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLM 432
Query: 448 KGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFY-RKDLDEALDKMGTTVDPEERQKYI 506
G H + + ++ KG +Y ++D+ ++ D E+R +
Sbjct: 433 IGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTML 492
Query: 507 EEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVIN----PYTLDVYLDD 552
++ E+IL + A VPL+ + A + + +IN PY D+ + +
Sbjct: 493 KKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDFPYFGDLVVKE 542
>sp|P33590|NIKA_ECOLI NICKEL-BINDING PERIPLASMIC PROTEIN PRECURSOR >gi|628766|pir||S39594
nickel-binding periplasmic protein precursor -
Escherichia coli >gi|404845|emb|CAA51659.1| (X73143)
NikA [Escherichia coli] >gi|466612|gb|AAB18451.1|
(U00039) nikA [Escherichia coli]
>gi|1789887|gb|AAC76501.1| (AE000423) periplasmic
binding protein for nickel [Escherichia coli K12]
Length = 524
Score = 139 bits (348), Expect = 6e-32
Identities = 109/373 (29%), Positives = 174/373 (46%), Gaps = 34/373 (9%)
Query: 79 LVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRL 138
+V+ L+ +G +IP LA+SW SEDGK TF LR ++ + G P AE F +
Sbjct: 54 MVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENFRAV 113
Query: 139 MNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKV 198
++ R L + +VK + +Q+ K Y P L LA P + ++
Sbjct: 114 LDNRQRHAWLELA-NQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNH 172
Query: 199 GPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRI 257
+ + P GTGP+ + + Y + RN YW + P I+ I F +
Sbjct: 173 ETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEK------------PAIKKITFNV 220
Query: 258 IKEPFTLVSEFKAGNIHVLLD----VPPEFYKDLANDP--NVEMIPALEYVLHYIGFNCQ 311
I +P T F+ G+I +L +P + + + +P + ++ +E V+ + N
Sbjct: 221 IPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVM--LALNTA 278
Query: 312 KYPFNDTRVRQAINMAINREEIIKYALEG---LAVPVHGPLVPSMNGYSEKMEEYAKQKY 368
K P N+ VR+A+N A+N++ +I AL G +A + P VP N +
Sbjct: 279 KAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYAN--------LGLKPS 330
Query: 369 PYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI 428
YDP+KAK LL +AGW G I E KNG +E+ + + +A+IIQA + +I
Sbjct: 331 QYDPQKAKALLEKAGWTLPAGKDIRE-KNGQPLRIELSFIGTDALSKSMAEIIQADMRQI 389
Query: 429 GIKVKIRTVEESS 441
G V + EESS
Sbjct: 390 GADVSLIGEEESS 402
>pir||T35938 probable substrate binding protein - Streptomyces coelicolor
>gi|4158197|emb|CAA22760.1| (AL035206) putative
substrate binding protein [Streptomyces coelicolor
A3(2)]
Length = 542
Score = 139 bits (348), Expect = 6e-32
Identities = 132/512 (25%), Positives = 217/512 (41%), Gaps = 50/512 (9%)
Query: 13 ALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW 72
A AA AAG PT G G TE ++ VIG +PDTL P
Sbjct: 21 AAAAVAFAAGATACSAPTG-----GGGDGGTEAAESV-----VIGVASEPDTLSPLLGYG 70
Query: 73 VDITTGLVFATLINMGTNGKIIPGLAESW-EISEDGKVITFHLRKGIRDALGNPITAEDV 131
D +F L+ T+ ++ P LA + ++++DG+ TF LR+G++ + G P+TA DV
Sbjct: 71 KD-GNSKIFDGLLARDTDLELKPALAAALPKVTDDGRTYTFTLREGVKFSDGEPLTAGDV 129
Query: 132 KFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFS 191
+ + +++ +T + A L ++ V+ D TV K PY P A L I
Sbjct: 130 VYTYRTVLDEKTNN-TARSELDAVENVRASGDGTVVFTLKYPYAP----FAARTVLPIVP 184
Query: 192 KEFYEKVGP--VQFGQTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPP 248
+ K P F P GTGPY + W +G + ++ NP YW + P
Sbjct: 185 EHVAGKQDPNTGDFNTEPVGTGPYVLTGWSKGEKLGFRANPHYWGDK------------P 232
Query: 249 YIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGF 308
+++ +I + + ++G++ + +PP D A Y +
Sbjct: 233 AVKSFTMAVIADDNVRATRLRSGDLDGAV-LPPNLAATFEKDDARRTYRARSYDFRAVTL 291
Query: 309 NCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKY 368
D +R+A++ A++R+ ++ L+G P +GPL Y +E
Sbjct: 292 PSAGQVTGDRAIRRALDAAVDRQAMVDKILDGAGRPAYGPLPVDDPWYERGIER------ 345
Query: 369 PYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI 428
P D A ++L EAGW + G G + ++G + ++ +G+ A + K
Sbjct: 346 PRDLAAAGRILDEAGW--KPGSGGIRARDGQRASFTLYYPSGDKVRQDHALAYASDAKKA 403
Query: 429 GIKVKI-----RTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYR 483
GI+VK+ +E TD V GL + +GL LL+ + G M Y
Sbjct: 404 GIEVKVEGATWEVIEPRMKTDAVLAGLGSVGDPDFGL---YTLLHSTLAGDGFNNMAHYA 460
Query: 484 KD-LDEALDKMGTTVDPEERQKYIEEAEKILI 514
+DEALD + DP+ R E +K L+
Sbjct: 461 NPAVDEALDAGRRSQDPKVRAAAYGEIQKALV 492
>dbj|BAB04286.1| (AP001509) nickel transport system (nickel-binding protein)
[Bacillus halodurans]
Length = 539
Score = 137 bits (341), Expect = 4e-31
Identities = 132/561 (23%), Positives = 244/561 (42%), Gaps = 64/561 (11%)
Query: 1 MRQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTR 60
+ +K++ ++ +++ LV GC ++++GT ++ E K + + R
Sbjct: 4 LNRKLILLFVISLISSILV--GC--------AESESGTVSNEGEENT---EKSITFSWPR 50
Query: 61 DPDTLDPQKSTWVDI-TTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIR 119
D ++P + +++ L++ G++ P LA+SW ISEDGK TF LR+G++
Sbjct: 51 DIGPMNPHVYNPSQLFAQSMIYEPLVSYTEGGELQPHLADSWTISEDGKEYTFKLREGVQ 110
Query: 120 DALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALP 179
+ G P AE VK FD + + V+ L++ +V+D++T +++ KEPY PAL
Sbjct: 111 FSDGTPFNAEIVKKNFDTWIEHSSLHSWLG-VMNVLEKTEVVDEFTFKMVLKEPYYPALQ 169
Query: 180 FLATMPPLGIFSKEFYEKVGPVQFG-QTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYR 237
LA + P+ + + G G + P GTGP+ + + + Y + RNP YW
Sbjct: 170 DLAVVRPVRFLGEAGFPDDGDTSQGIKEPIGTGPWMLSDYKQDEYAVFTRNPNYWGES-- 227
Query: 238 PDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD---VPPEFYKDLANDPNVE 294
P I+ + +II + T V F++G + ++ + + + L
Sbjct: 228 ----------PKIDKVTVKIIPDAETRVLAFESGELDLIFGEGVISMDAFNQLKESGQYG 277
Query: 295 MIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMN 354
+ + N D RVR A++ N++ ++ EG+ +
Sbjct: 278 TDLSEPVGTRSLLLNTSNEKLADLRVRLALHHGFNKQAMV----EGVTL----------- 322
Query: 355 GYSEKMEEYAKQKYP----------YDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVE 404
G EK + +P YD E+A L EAGW G + E KNG + +E
Sbjct: 323 GLEEKADNILSTNFPYTDIDVEPIEYDVEQANAYLDEAGWELPAGKTVRE-KNGEQLELE 381
Query: 405 MWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQM-YLFRYG--LQ 461
+ + +A+ +QA+ A IG+K+ I +E ++ G + + + YG
Sbjct: 382 LIYDKTDPLQKAMAETMQAEWAAIGVKLDITGLELTTQIQRRRAGDFDVDFWYNYGAPYD 441
Query: 462 DAQILLYMFHSKKGVKRM---FFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAP 518
+ + + GV +++LDE + + D ERQ+ L + +
Sbjct: 442 PHSFINVVAEAGWGVAEAHSNLSMKEELDEQVRATLASTDETERQELYGSILNTLQEQSV 501
Query: 519 MVPLYARKVFLAYRKDVVEGI 539
VP+ K + Y+++V E I
Sbjct: 502 FVPISYIKKTVVYQENVNEFI 522
>pir||G82981 probable binding protein component of ABC dipeptide transporter
PA5317 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9951634|gb|AAG08702.1|AE004944_6 (AE004944)
probable binding protein component of ABC dipeptide
transporter [Pseudomonas aeruginosa]
Length = 526
Score = 135 bits (337), Expect = 1e-30
Identities = 124/484 (25%), Positives = 208/484 (42%), Gaps = 64/484 (13%)
Query: 91 GKIIPGLAESWEISEDGKVITFHLRKGIR---DALGNP---ITAEDVKFVFDRLMNP--- 141
G ++P LAE W +S+DG F LR+G+ A P + A+DV F F R+++P
Sbjct: 65 GTVVPSLAERWSVSDDGLSYRFDLRQGVHFHSTAYFKPSRTLDADDVVFSFQRMLDPANP 124
Query: 142 -----ETRSPMAPLVLGP--LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEF 194
+ P A + P +K V+ D+ V + P LP L+ M I+S E+
Sbjct: 125 WHKVAQNGFPHAQSMQLPELIKRVEKSGDHQVLFVLDHPDATFLPMLS-MGFASIYSAEY 183
Query: 195 YEKV----GPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYI 250
+++ P + P G+GP+ ++ + A + Y NP EY G P +
Sbjct: 184 ADQLMKAGTPEKLNAEPIGSGPFVFKRFQKDAVVRYAANP----EYFA-------GKPAV 232
Query: 251 ETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNC 310
+ + F I + + + + G + L P + D ++++ ++ ++ N
Sbjct: 233 DALIFAITPDANVRLQKLRRGECQIALSPKPLDVESARKDASLKVEQTPAFMTAFVALNT 292
Query: 311 QKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPY 370
Q P +D +VRQAIN+A +R ++ EG A G P+ Y+ + YP+
Sbjct: 293 QHPPLDDPKVRQAINLAFDRTSYLQAVFEGSASAATGIYPPNTWSYARDI-----PAYPH 347
Query: 371 DPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWI-STGELEAPKV---AQIIQAQLA 426
PE+A++LLA G + E + +W +G L P AQ++QA LA
Sbjct: 348 APEQARKLLA--------GKQLPE--------LNIWTRPSGSLLNPNPSLGAQLLQADLA 391
Query: 427 KIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQ--DAQILLYMFHSKKGVKRMFFYRK 484
+ GIK IR +E G H + + D L S VK + +
Sbjct: 392 EAGIKANIRVIEWGELIRRAKNGEHDLLFMGWAGDNGDPDNFLTPQFSCASVKSGLNFAR 451
Query: 485 DLDEALDKM----GTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIV 540
D LDK+ E+R +A+K++ + A +PL A A + V+G
Sbjct: 452 YCDPGLDKLIADGKAASSQEQRTGLYHQAQKLIHEQALWLPL-AHPTAFALTRQEVQGYQ 510
Query: 541 INPY 544
+NP+
Sbjct: 511 VNPF 514
>emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis]
Length = 543
Score = 133 bits (331), Expect = 6e-30
Identities = 124/518 (23%), Positives = 228/518 (43%), Gaps = 56/518 (10%)
Query: 52 KVLVIGYTRDPDTLDP----QKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDG 107
KVL + +P + DP +W + + L +G + + P +AE W +S+D
Sbjct: 44 KVLYVNNENEPTSFDPPIGFNNVSWQPLNN--IMEGLTRLGKDHEPEPAMAEKWSVSKDN 101
Query: 108 KVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVL------------GPL 155
K TF +R+ + G+P+TA D ++ + R+++P+ + A L G
Sbjct: 102 KTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKGKK 161
Query: 156 KEVKVI--DDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQ--TPAGTG 211
+VKV DD T+++ + P L ++ P E +K P F + T G G
Sbjct: 162 DDVKVTAKDDRTLEVTLEAPQKYFLSVVSN--PAYFPVNEKVDKDNPKWFAESDTFVGNG 219
Query: 212 PYYVVKWVRGAYIEY-KRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
P+ + +W I K + YW ++ ++ +++ ++ + T F++
Sbjct: 220 PFKLTEWKHDDSITMEKSDTYWDKD-----------TVKLDKVKWAMVSDRNTDYQMFQS 268
Query: 271 GNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINR 330
G + VP E L + NV ++ + L++ FN PF + +R+A MA+++
Sbjct: 269 GELDTAY-VPAELSDQLLDQDNVNIVD--QAGLYFYRFNVNMEPFQNENIRKAFAMAVDQ 325
Query: 331 EEIIKYALEGLAVPVHGPLVPSMNGYSEK-MEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
EEI+KY + P H + P K E + KAKQLL +
Sbjct: 326 EEIVKYVTKNNEKPAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKG------- 378
Query: 390 DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLA-KIGIKVKIRTVEESSFTD--LV 446
++++N NK + + E K+A+ IQ +L +G+ VK+ +E + F +
Sbjct: 379 ---MKEENYNKLPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKA 435
Query: 447 SKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYI 506
K F D L F + + R + K+ D+ + + D + R +
Sbjct: 436 LKFQFSQSSFLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLM 495
Query: 507 EEAEKILIDGAPMVPLY-ARKVFLAYRKDVVEGIVINP 543
+AE++LI+ AP++P+Y +V L + + V+GIV +P
Sbjct: 496 HQAEELLINEAPIIPVYFYNQVHL--QNEQVKGIVRHP 531
>pir||B75364 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6459480|gb|AAF11267.1|AE002012_7 (AE002012)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 528
Score = 132 bits (330), Expect = 7e-30
Identities = 150/540 (27%), Positives = 228/540 (41%), Gaps = 74/540 (13%)
Query: 54 LVIGYTRDPDTLDPQKSTWVDITTGLV----FATLINM--GTNGKIIPGLAESWEISEDG 107
LV G DP +LD T VD + +V + TL+ GT+ ++ PGLA SW ++D
Sbjct: 24 LVYGAGGDPVSLD--SGTIVDGNSSVVQMQVYDTLVKFKKGTS-ELAPGLATSWSANKDS 80
Query: 108 KVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMA---------PLVLGP---- 154
TF LRKG++ + G P A+ V + +R +PE G
Sbjct: 81 TQWTFTLRKGVKFSDGTPFNADAVVYNINRWWDPEASGGAKAQGKSFISWQFTFGGFKGE 140
Query: 155 ----LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFG---QTP 207
LK VK + V L P+ P LP GI S ++ G ++G P
Sbjct: 141 KNTLLKSVKAVGQDKVVLTLTRPFAP-LPAAFATTFFGIASPAAVKQEG-AKYGTPTSLP 198
Query: 208 AGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVS 266
GTGP+ + W G I K NP YW + + D + R IK+P ++
Sbjct: 199 VGTGPFVMQSWKTGDRIVLKPNPNYWGNKAKYDQLV------------IRFIKDPSQRLN 246
Query: 267 EFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFN-CQKYPFNDTRVRQAIN 325
E KAG I D+ PE K + D N++ + + + + N KY ND +VRQAI
Sbjct: 247 ELKAGTIDFTSDLNPEQLKSVQGDKNLKAVIIPSFNVGLLSLNHSNKYLKND-KVRQAIG 305
Query: 326 MAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWV 385
MAIN++ I+ GL ++PS +++ A Y +DP AK+LLA+AG+
Sbjct: 306 MAINKKAIVDAFWNGLG-ESSSSILPSSLKWADNPSVPA--DYKFDPAAAKKLLADAGY- 361
Query: 386 DRDGDGILEDKNGNKFIVEMW---ISTGELEAPK-VAQIIQAQLAKIGIKVKIRTVEESS 441
N F +++W +S PK +A+ + A L IGIKV ++T + +
Sbjct: 362 ------------PNGFSLDLWYMPVSRPYFPTPKPIAEALAADLGAIGIKVNLKTEDWAK 409
Query: 442 FTD--LVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKD-LDEALDKMGTTVD 498
+ + L + G + G + Y H + Y+ LD + K +
Sbjct: 410 YLEDRLKTPGFDMHMIGWTGPYASPYTFYNTHYGLEAEADIKYKSPRLDALMLKAAASSS 469
Query: 499 PEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTL----DVYLDDAK 554
E+ K E KI P+ + LA + V+G P L D+ LD K
Sbjct: 470 RAEQAKVYAELHKITYGLNLRFPIVHSRP-LAATRSYVKGWEPGPSVLTPFEDITLDGKK 528
>sp|P06109|XP55_STRLI XP55 PROTEIN PRECURSOR >gi|80816|pir||S07386 55K protein precursor
- Streptomyces lividans >gi|47220|emb|CAA68337.1|
(Y00142) xp55 (AA 1 - 542) [Streptomyces lividans]
Length = 542
Score = 132 bits (330), Expect = 7e-30
Identities = 134/515 (26%), Positives = 211/515 (40%), Gaps = 57/515 (11%)
Query: 13 ALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW 72
A AA AAG PT G G TE ++ VIG +PDTL P
Sbjct: 21 AAAAVAFAAGATACSAPTG-----GGGDGGTEAAESV-----VIGVASEPDTLSPLLGYG 70
Query: 73 VDITTGLVFATLINMGTNGKIIPGLAESW-EISEDGKVITFHLRKGIRDALGNPITAEDV 131
D +F L+ T+ ++ P LA + ++++DG+ ITF LR+G+ + G P+TA DV
Sbjct: 71 KD-GNSKIFDGLLARDTDLELKPALAAALPKVTDDGRTITFTLREGVNFSDGEPLTAGDV 129
Query: 132 ---KFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLG 188
+ V D N RS L ++E D TV K PY P A L
Sbjct: 130 YTYRTVLDEKTNNTARSE-----LDAVRERSARADGTVVFTLKYPYAP----FAARTVLP 180
Query: 189 IFSKEFYEKVGP--VQFGQTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNP 245
I + K P F P GTGPY + W +G + ++ NP YW +
Sbjct: 181 IVPEHVAGKQDPNTGDFNTEPVGTGPYVLTGWSKGEKLGFRANPHYWGDK---------- 230
Query: 246 GPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHY 305
P +++ + + + ++G++ + +PP D A Y
Sbjct: 231 --PAVKSFTMAVTADDNVRATRLRSGDLDGAV-LPPNLAATFEKDDGRRTYRARSYDFRA 287
Query: 306 IGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAK 365
+ D +R+A++ A++R+ ++ L+G P +GPL Y +E
Sbjct: 288 VTLPSAGQVTGDRAIRRALDAAVDRQAMVDKILDGAGRPAYGPLPVDDPWYERGIER--- 344
Query: 366 QKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQL 425
P D A ++L EAGW + G G + ++G + ++ +G+ A +
Sbjct: 345 ---PRDLAAAGRILDEAGW--KPGSGGIRARDGQRASFTLYYPSGDKVRQDHALAYASDA 399
Query: 426 AKIGIKVKI-----RTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMF 480
K GI+VK+ +E TD V L + +GL LL+ + G M
Sbjct: 400 KKAGIEVKVEGATWEVIEPRMKTDAVLADLGSVGDPDFGL---YTLLHSTLAGDGFNNMA 456
Query: 481 FYRKD-LDEALDKMGTTVDPEERQKYIEEAEKILI 514
Y +DEALD + DP+ R E +K L+
Sbjct: 457 HYANPAVDEALDAGRRSQDPKVRAAAYREIQKALV 491
>pir||G69618 dipeptide ABC transporter (dipeptide-binding protein) - Bacillus
subtilis >gi|2632017|emb|CAA05576.1| (AJ002571) DppE
[Bacillus subtilis] >gi|2633650|emb|CAB13153.1| (Z99110)
dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus subtilis]
Length = 549
Score = 131 bits (327), Expect = 2e-29
Identities = 137/570 (24%), Positives = 244/570 (42%), Gaps = 66/570 (11%)
Query: 2 RQKIVKTLLVFALAAALVAA--GCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYT 59
R K VK L LA L A GC T + G+ T+ KVL +
Sbjct: 6 RMKRVKKLWGMGLALGLSFALMGC------TANEQAGKEGSHDKAKTSG--EKVLYVNNE 57
Query: 60 RDPDTLDP----QKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLR 115
+P + DP +W + + L +G + + P +AE W +S+D K TF +R
Sbjct: 58 NEPTSFDPPIGFNNVSWQPLNN--IMEGLTRLGKDHEPEPAMAEKWSVSKDNKTYTFTIR 115
Query: 116 KGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVL------------GPLKEVKVI-- 161
+ + G+P+TA D ++ + R+++P+ + A L G +VKV
Sbjct: 116 ENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKGKKDDVKVTAK 175
Query: 162 DDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQ--TPAGTGPYYVVKWV 219
DD T+++ + P L ++ P E +K P F + T G GP+ + +W
Sbjct: 176 DDRTLEVTLEAPQKYFLSVVSN--PAYFPVNEKVDKDNPKWFAESDTFVGNGPFKLTEWK 233
Query: 220 RGAYIEY-KRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD 278
I K + YW ++ ++ +++ ++ + T F++G +
Sbjct: 234 HDDSITMEKSDTYWDKD-----------TVKLDKVKWAMVSDRNTDYQMFQSGELDTAY- 281
Query: 279 VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYAL 338
VP E L + NV ++ + L++ FN PF + +R+A MA+++EEI+KY
Sbjct: 282 VPAELSDQLLDQDNVNIVD--QAGLYFYRFNVNMEPFQNENIRKAFAMAVDQEEIVKYVT 339
Query: 339 EGLAVPVHGPLVPSMNGYSEK-MEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKN 397
+ H + P K E + KAKQLL + ++++N
Sbjct: 340 KNNEKTAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKG----------MKEEN 389
Query: 398 GNKFIVEMWISTGELEAPKVAQIIQAQLA-KIGIKVKIRTVEESSFTD--LVSKGLHQMY 454
NK + + E K+A+ IQ +L +G+ VK+ +E + F + K
Sbjct: 390 YNKLPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQS 449
Query: 455 LFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILI 514
F D L F + + R + K+ D+ + + D + R + +AE++LI
Sbjct: 450 SFLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLMHQAEELLI 509
Query: 515 DGAPMVPLY-ARKVFLAYRKDVVEGIVINP 543
+ AP++P+Y +V L + + V+GIV +P
Sbjct: 510 NEAPIIPVYFYNQVHL--QNEQVKGIVRHP 537
>sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR
Length = 543
Score = 130 bits (323), Expect = 5e-29
Identities = 123/518 (23%), Positives = 227/518 (43%), Gaps = 56/518 (10%)
Query: 52 KVLVIGYTRDPDTLDP----QKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDG 107
KVL + +P + DP +W + + L +G + + P +AE W +S+D
Sbjct: 44 KVLYVNNENEPTSFDPPIGFNNVSWQPLNN--IMEGLTRLGKDHEPEPAMAEKWSVSKDN 101
Query: 108 KVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVL------------GPL 155
K TF +R+ + G+P+TA D ++ + R+++P+ + A L G
Sbjct: 102 KTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKGKK 161
Query: 156 KEVKVI--DDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQ--TPAGTG 211
+VKV DD T+++ + P L ++ P E +K P F + T G G
Sbjct: 162 DDVKVTAKDDRTLEVTLEAPQKYFLSVVSN--PAYFPVNEKVDKDNPKWFAESDTFVGNG 219
Query: 212 PYYVVKWVRGAYIEY-KRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
P+ + +W I K + YW ++ ++ +++ ++ + T F++
Sbjct: 220 PFKLTEWKHDDSITMEKSDTYWDKD-----------TVKLDKVKWAMVSDRNTDYQMFQS 268
Query: 271 GNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINR 330
G + VP E L + NV ++ + L++ FN PF + +R+A MA+++
Sbjct: 269 GELDTAY-VPAELSDQLLDQDNVNIVD--QAGLYFYRFNVNMEPFQNENIRKAFAMAVDQ 325
Query: 331 EEIIKYALEGLAVPVHGPLVPSMNGYSEK-MEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
EEI+KY + H + P K E + KAKQLL +
Sbjct: 326 EEIVKYVTKNNEKTAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKG------- 378
Query: 390 DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLA-KIGIKVKIRTVEESSFTD--LV 446
++++N NK + + E K+A+ IQ +L +G+ VK+ +E + F +
Sbjct: 379 ---MKEENYNKLPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKA 435
Query: 447 SKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYI 506
K F D L F + + R + K+ D+ + + D + R +
Sbjct: 436 LKFQFSQSSFLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLM 495
Query: 507 EEAEKILIDGAPMVPLY-ARKVFLAYRKDVVEGIVINP 543
+AE++LI+ AP++P+Y +V L + + V+GIV +P
Sbjct: 496 HQAEELLINEAPIIPVYFYNQVHL--QNEQVKGIVRHP 531
>pir||S16651 dciAE protein - Bacillus subtilis
Length = 543
Score = 129 bits (322), Expect = 6e-29
Identities = 123/518 (23%), Positives = 227/518 (43%), Gaps = 56/518 (10%)
Query: 52 KVLVIGYTRDPDTLDP----QKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDG 107
KVL + +P + DP +W + + L +G + + P +AE W +S+D
Sbjct: 44 KVLYVNNENEPTSFDPPIGFNNVSWQPLNN--IMEGLTRLGKDHEPEPAMAEKWSVSKDN 101
Query: 108 KVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVL------------GPL 155
K TF +R+ + G+P+TA D ++ + R+++P+ + A L G
Sbjct: 102 KTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKGKK 161
Query: 156 KEVKVI--DDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQ--TPAGTG 211
+VKV DD T+++ + P L ++ P E +K P F + T G G
Sbjct: 162 DDVKVTAKDDRTLEVTLEAPQKYFLSVVSN--PAYFPVNEKVDKDNPKWFAESDTFVGNG 219
Query: 212 PYYVVKWVRGAYIEY-KRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
P+ + +W I K + YW ++ ++ +++ ++ + T ++
Sbjct: 220 PFKLTEWKHDDSITMEKSDTYWDKD-----------TVKLDKVKWAMVSDRNTDYQMKQS 268
Query: 271 GNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINR 330
G + VP E L + NV ++ + L++ FN PF + +R+A MA+++
Sbjct: 269 GELDTAY-VPAELSDQLLDQDNVNIVD--QAGLYFYRFNVNMEPFQNENIRKAFAMAVDQ 325
Query: 331 EEIIKYALEGLAVPVHGPLVPSMNGYSEK-MEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
EEI+KY + P H + P K E + KAKQLL +
Sbjct: 326 EEIVKYVTKNNEKPAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKG------- 378
Query: 390 DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLA-KIGIKVKIRTVEESSFTD--LV 446
++++N NK + + E K+A+ IQ +L +G+ VK+ +E + F +
Sbjct: 379 ---MKEENYNKLPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKA 435
Query: 447 SKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYI 506
K F D L F + + R + K+ D+ + + D + R +
Sbjct: 436 LKFQFSQSSFLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLM 495
Query: 507 EEAEKILIDGAPMVPLY-ARKVFLAYRKDVVEGIVINP 543
+AE++LI+ AP++P+Y +V L + + V+GIV +P
Sbjct: 496 HQAEELLINEAPIIPVYFYNQVHL--QNEQVKGIVRHP 531
>dbj|BAB07355.1| (AP001519) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 610
Score = 127 bits (316), Expect = 3e-28
Identities = 131/510 (25%), Positives = 219/510 (42%), Gaps = 66/510 (12%)
Query: 66 DPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNP 125
D Q W D LI+ N + A ++EISEDG+ TF +R + G P
Sbjct: 102 DAQVLQWFD-------DALIDWDENYVMTQDGAATYEISEDGRTFTFTIRDNVNWHDGEP 154
Query: 126 ITAEDVKFVF--------------DRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYK 171
+TAED F D L N E + ++V+D+ T+++ YK
Sbjct: 155 VTAEDWAFAHEVIGHPNYDGIRFDDTLRNVEGIEEYHNGEADHISGIEVVDEKTLKITYK 214
Query: 172 EPYGPALPFLAT----MPPLG--IFSKEFYEKVGPV-QFGQTPAGTGPYYVVKWVRGAYI 224
+ A P L T PL IF E + + Q P G GP+ V V G +
Sbjct: 215 K----ATPSLMTGGVWYYPLAKHIFGDMDIEDISSSPEVRQNPIGFGPFKVENVVPGESV 270
Query: 225 EYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEF 283
Y +N YW+ G P ++ + +++ P ++ ++G + ++ P +
Sbjct: 271 VYSKNEDYWR------------GEPNLDEVVLKVVS-PNVVMQSLRSGEVDLVHSFPADQ 317
Query: 284 YKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMA-INREEIIKYALEGLA 342
+ D A+ N++ + ++ YIGF + + + MA +N + +A++ A
Sbjct: 318 FPDNADTSNLDWLGVVDRAYTYIGFKLGTWEDGEVKTDPDAKMADVNLRRAMWHAIDNDA 377
Query: 343 VP---VHGPLVPSMNGYSEKMEEYAKQKYP---YDPEKAKQLLAEAGWVDRDGDGILEDK 396
V HG E+ P YDPE AKQLL EAG+ D DGDG ED
Sbjct: 378 VGERFYHGLRWAGTTLIPPSHPEFHDDTNPGRAYDPELAKQLLDEAGYEDVDGDGFREDL 437
Query: 397 NGNKFIVEM-WISTGELEAPKVAQIIQAQLAKIGIKVKI---RTVEESSFTDLVSKGLHQ 452
GN+ ++ +S G++ P IQA ++G+KV++ R E ++F D V +
Sbjct: 438 EGNELVINFASMSGGDIAEPLAQYYIQA-WEQVGLKVQLLDGRLHEFNAFYDRVEEDDPD 496
Query: 453 MYLFR----YGLQDAQILLYMFHSKKGVKRMFFYRKD--LDEALDKMGTTVDPEERQKYI 506
+ +++ G+ LY + R D L+EAL + D E+RQ+
Sbjct: 497 IDIYQGAWGVGIDVDPSGLYGRRAPFNYTRWSSEENDRLLEEALSE--EAFDVEKRQEIY 554
Query: 507 EEAEKILIDGAPMVPLYARKVFLAYRKDVV 536
+E +++++D P++P R + K +V
Sbjct: 555 KEWQQLMVDEVPVIPTLYRSEIVPVNKRIV 584
>pir||G72720 probable oligopeptide-binding protein oppA APE0304 - Aeropyrum
pernix (strain K1) >gi|5103943|dbj|BAA79259.1|
(AP000059) 802aa long hypothetical oligopeptide-binding
protein oppA [Aeropyrum pernix]
Length = 802
Score = 127 bits (315), Expect = 4e-28
Identities = 140/554 (25%), Positives = 232/554 (41%), Gaps = 92/554 (16%)
Query: 49 LKHK-VLVIGYTRDPDTLDP---QKSTWVDITTGLVFATLINMGTNGKII-PGLAESWEI 103
LKH +++ +P LDP + +I V+ L+ N K I P LAE WEI
Sbjct: 271 LKHPDTIIVARIGEPQGLDPAFAHDTASAEIIDN-VYERLVWTTKNFKEIKPWLAERWEI 329
Query: 104 SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRS----PMAPLVLGPL---- 155
++G F++RKG++ G +TA DV++ F RL+ + + P ++
Sbjct: 330 KDNGTTYIFYIRKGVKFHNGEELTAYDVEYSFKRLLVLDLPQGHVRQIKPFLIDEWDPDQ 389
Query: 156 --KEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQ----------- 202
+ ++ ID YTV K+P+ P L LA+ I +K++ + G
Sbjct: 390 IDQAIRAIDKYTVVFKLKKPFAPFLRILASDYAFVIINKKWAIEHGDWDPSLPKSEWSKF 449
Query: 203 -------FGQTPAGTGPYYVVKWVRGAYIEYKR-NPYWKREYRPDPALKNPGPPYIETIR 254
+ P GTGPY +V+WV G I +R YW+ GP + +
Sbjct: 450 RGKINDYIMRNPMGTGPYKMVEWVPGQRIVLERFEDYWQ------------GPAPTKRVV 497
Query: 255 FRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIP-ALEYVLHYI--GFNCQ 311
+ E T + K G++ + D+P + + N P + + A V+ +I FN
Sbjct: 498 IMFVPELSTRLLMLKNGDVDI-ADIPVSYKSQVENVPGITIFTGAATNVVEFIQFNFNIS 556
Query: 312 KYP---------FNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEE 362
K P F D VR+A A EE I+ A +GLA+ + P GY E
Sbjct: 557 KIPEGDTIWPDFFTDVNVRKAFAYAFPYEEFIEKAYQGLAIRARACVPPGWPGYVE---- 612
Query: 363 YAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQ 422
Y YDPEKA + +A W G + E+ F++ + + G + +++
Sbjct: 613 --AYNYEYDPEKAAEYFKKA-W----GGRVWEE----GFVITAFYNAGNEQRRIALELLA 661
Query: 423 AQLAKIGIKVKIRTVE----------ESSFTDLVSKGLHQMYLFRYGLQDAQILLY-MFH 471
L KI K K+R E+ L + G YL + + Q+ Y +F
Sbjct: 662 ESLQKINPKFKLRVQALDWPVYLEKMENFELPLFAIGDWINYLDPHIAVEQQLASYSLFQ 721
Query: 472 SKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKI-LIDGAPMVPLYARKVFLA 530
S G + +DE + + DP++R++ ++ + I L + P + VF+
Sbjct: 722 SLGG----GYSNPKVDELIKQAALETDPQKREELYKQIQLIALREDVPQIYTVYPTVFVV 777
Query: 531 YRKDVVEGIVINPY 544
R D ++G NP+
Sbjct: 778 MR-DWIQGYFYNPF 790
>pir||A48650 agrocinopine utilization periplasmic binding protein accA precursor
- Agrobacterium tumefaciens plasmid pTiC58
>gi|3153177|gb|AAC17197.1| (AF010180) AccA
[Agrobacterium tumefaciens]
Length = 521
Score = 126 bits (313), Expect = 7e-28
Identities = 136/514 (26%), Positives = 224/514 (43%), Gaps = 50/514 (9%)
Query: 40 TSPTETTAALKHKVLVIGYTRDPDTLDPQK--STWVDITTGLVFATLINMGTNGK----- 92
T+ + T A + + L +G P++L+P S +F TLI K
Sbjct: 21 TAGAKFTFAQERRALRLGVNGLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGN 80
Query: 93 ---IIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVF--DRLMNPET--RS 145
++P LAESWE D K + F LR+ + G +TA+DV + F +RL PE +
Sbjct: 81 AIDLVPALAESWE-RIDEKSVRFKLRQKVMFHDGVELTADDVAYTFSSERLWGPEAIKKI 139
Query: 146 PMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQ 205
P+ E V D YTV L K P F+A+ I KE+Y+K+G V FG
Sbjct: 140 PLGKSYSLDFDEPVVEDKYTVTLRTKTPSYLIETFVASWMSR-IVPKEYYKKLGAVDFGN 198
Query: 206 TPAGTGPYYVVKWVRGAYIEYKRN-PYWKREYRPDPALKNPGP-PYIETIRFRIIKEPFT 263
P GTGPY V++V G + + N YW GP P I ++I+ EP T
Sbjct: 199 KPVGTGPYKFVEFVAGDRVVLEANDAYW-------------GPKPTASKITYQIVAEPAT 245
Query: 264 LVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQA 323
V+ +G ++ + P+ + + + P++E L H FN + F D ++R+A
Sbjct: 246 RVAGLISGEYDIITTLTPDDIQLINSYPDLETRGTLIENFHMFTFNMNQEVFKDKKLRRA 305
Query: 324 INMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAG 383
+ +A+NR +++ + A G P+ Y E + ++ Y+ E+AK+L+ E+G
Sbjct: 306 LALAVNRPIMVEALWKKQASIPAGFNFPN---YGETFDP-KRKAMEYNVEEAKRLVKESG 361
Query: 384 WVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFT 443
+ DG I GN + M P + +I+ +IG+ V ++T SF
Sbjct: 362 Y---DGTPITYHTMGNYYANAM---------PALMMMIE-MWKQIGVNVVMKTYAPGSFP 408
Query: 444 DLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYR--KDLDEALDKMGTTVDPEE 501
+ ++ ++ F V++ + ++ + +E K+ + +E
Sbjct: 409 PDNQTWMRNWSNGQWMTDAYATIVPEFGPNGQVQKRWGWKAPAEFNELCQKVTVLPNGKE 468
Query: 502 RQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDV 535
R I + AP V LY A RKDV
Sbjct: 469 RFDAYNRMRDIFEEEAPAVILYQPYDVYAARKDV 502
>pir||A72367 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981044|gb|AAD35616.1|AE001728_17 (AE001728)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 579
Score = 125 bits (310), Expect = 2e-27
Identities = 112/388 (28%), Positives = 181/388 (45%), Gaps = 33/388 (8%)
Query: 82 ATLINMGTNGKIIPGLAESWEI--SEDGKV-ITFHLRKGIRDALGNPITAEDVKF-VFDR 137
A++I + +I P LAESWE+ +EDG + I +HLRKG++ + G P TA+DV F + D
Sbjct: 72 ASMIELDNYARIHPALAESWELIQNEDGSMEIVWHLRKGVKWSDGTPFTADDVVFTINDV 131
Query: 138 LMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEK 197
NP+ + M L + +DDYTV+ KE Y A+ ++ +P E Y K
Sbjct: 132 YFNPDIPNDMQDLFADNWPVAEKLDDYTVKTTLKETYRLAVRYIGGIPIFPKHLAEPYVK 191
Query: 198 VGPV-QFGQTPA-------GTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPY 249
G +F A G GP+ V++V Y+ + +NPY+ + + L PY
Sbjct: 192 EGKFKEFWTVDAINKGEIVGLGPFIPVEYVPDQYVRFVKNPYYWKYDKEGKQL-----PY 246
Query: 250 IETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEF--YKDLANDPN-VEMIPALEYVLHYI 306
++ I F+II F+ G + V E+ K +A + + V I + +I
Sbjct: 247 LDGIIFKIIPTQDAQRLAFENGEVDVYGPRGTEYAELKAMAREKDWVVGIGGPNFGTTFI 306
Query: 307 GFN------CQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM 360
FN ++ F + R+A+ AI+++ +I GLAV GP+ + Y
Sbjct: 307 SFNWNAPDPVKRKWFRNDFFRRAVAYAIDKQSMIDTLYNGLAVEQWGPISQAATVY---Y 363
Query: 361 EEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQI 420
+E +KYPY+ + A+ +L + G D +G L D GN + + G + I
Sbjct: 364 DESVLRKYPYNLDLARTML-KLGGFKWDENGQLLDSEGNPVKFIIMTNAGNQIREGMGNI 422
Query: 421 IQAQLAKIGIKVKIRTVEESSFTDLVSK 448
I L K+G+ V ++ F LV K
Sbjct: 423 ITEALKKLGMDVTFAPID---FNTLVQK 447
>gb|AAG20588.1| (AE005129) dipeptide ABC transporter ATP-binding; DppD
[Halobacterium sp. NRC-1]
Length = 566
Score = 124 bits (309), Expect = 2e-27
Identities = 136/531 (25%), Positives = 227/531 (42%), Gaps = 87/531 (16%)
Query: 62 PDTLDPQKSTWVDIT--TGLVFATLINM--GTNGKIIPGLAESWEISEDGKVITFHLRKG 117
P DPQ++T +++ T +F TLI GT+G++ GLA+ W + DG T LR+
Sbjct: 61 PQNYDPQQTTSGEVSKVTNQIFDTLIQFKPGTSGELTSGLADDWTL--DGTTATLTLRED 118
Query: 118 IRDALGNPITAEDVKFVFDRLMNPE-------TRSPMAPLVLGP-LKEVKVIDDYTVQLI 169
G +TA DVK R ++ E RS A + G + V+ DY V +
Sbjct: 119 ATFHSGADLTATDVKATIRRFIDDEYDYYLGSDRSGYASITFGDWVDSVEATGDYEVTID 178
Query: 170 YKEPYGPALPFLATMPPLGIFSKEFYEKVGP---VQFGQTPAGTGPYYVVKWVRGAYIEY 226
+ Y P L LA I S++ E +G + G P GTGP+ + E
Sbjct: 179 LTQQYAPFLRNLAIFAA-AILSRDQIESLGADAQPELGTDPVGTGPFEFDQLDN----ET 233
Query: 227 KR------NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVP 280
+R + YW G P + + F+ T G+ H+ ++
Sbjct: 234 QRVRLTAFDDYWG------------GAPSVSAVIFKTTGSNQTRAQGLINGDAHITDNLD 281
Query: 281 PEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYP-FNDTRVRQAINMAINREEIIKYALE 339
+ + +++ + + + Y+ FN + P F D V++AI+MAINR+EI+ +
Sbjct: 282 AQSIQKVSSADSASVRQKNGINVGYMAFNHDRKPAFRDPLVKRAISMAINRDEIVDSIYQ 341
Query: 340 GLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGN 399
G A + PL P + G+++ ++ YP+DP++A+ +LA+AG D +
Sbjct: 342 GFAASANQPLPPDVLGHNDDID-----SYPHDPQQAESMLADAGVTDLSFE--------- 387
Query: 400 KFIVEMWISTGELEAP-KVAQIIQAQLAKIGIKVKIRTVEE-SSFTDLVSKGLHQMYLFR 457
+ G P + A +++ LA+IG+ V+I + S++ + G H L
Sbjct: 388 --LATFSNPRGYNPNPIQTATQVKSDLAEIGVDVEINQFSQFSAYLEYTYDGRHDACLSG 445
Query: 458 YGLQDAQ------ILLY---------------MFHSKKGVKRM-FFYRKDLDEALDKMGT 495
+ +A +LL+ + K V + + D E +DK
Sbjct: 446 WYTDNADPDNFMYVLLHPGTDIDDVPADQNYIAWEDKNNVSNVSAWVDTDYMEFVDKGQR 505
Query: 496 TVDPEERQKYIEEAEKILIDGAPMVPL-YARKVFLAYRKDVVEGIVINPYT 545
T D RQ+Y +A +I D AP V L YA + + V E +V YT
Sbjct: 506 TYDDAARQQYYHQASQIAHDQAPWVYLDYADLI-----RGVNEAVVAESYT 551
>gi|10954940 Probable accA [Agrobacterium tumefaciens]
>gi|6498293|dbj|BAA87745.1| (AB016260) Probable accA
[Agrobacterium tumefaciens]
Length = 521
Score = 124 bits (308), Expect = 3e-27
Identities = 134/514 (26%), Positives = 220/514 (42%), Gaps = 50/514 (9%)
Query: 40 TSPTETTAALKHKVLVIGYTRDPDTLDPQK--STWVDITTGLVFATLINMGTNGK----- 92
T+ + T A + + L +G P++L+P S +F TLI K
Sbjct: 21 TAGAKFTFAQERRALRLGVNGLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGN 80
Query: 93 ---IIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVF--DRLMNPET--RS 145
++P LAESWE D K + F LR+ + G +TA+DV + F +RL PE +
Sbjct: 81 AIDLVPALAESWE-RIDEKSVRFKLRQKVMFHDGVELTADDVAYTFSSERLWGPEAIKKI 139
Query: 146 PMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQ 205
P+ E V D YTV L K P F+A+ I KE+Y K+G V FG
Sbjct: 140 PLGKSYSLDFDEPVVEDKYTVTLRTKTPSYLIETFVASWMSR-IVPKEYYRKLGAVDFGN 198
Query: 206 TPAGTGPYYVVKWVRGAYIEYKRN-PYWKREYRPDPALKNPGP-PYIETIRFRIIKEPFT 263
P GTGPY V++V G + + N YW GP P I ++I+ EP T
Sbjct: 199 KPVGTGPYKFVEFVAGDRVVLEANDAYW-------------GPKPTASKIIYQIVAEPAT 245
Query: 264 LVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQA 323
V+ +G ++ + P+ + + + P++E L H FN + F D ++R+A
Sbjct: 246 RVAGLISGEYDIITTLTPDDIQLINSYPDLETRGTLIENFHMFTFNMNQEVFKDKKLRRA 305
Query: 324 INMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAG 383
+ +A+NR +++ + A G P+ Y E + ++ Y+ E+AK+L+ E+G
Sbjct: 306 LALAVNRPIMVEALWKKQASIPAGFNFPN---YGETFDP-KRKAMEYNVEEAKRLVKESG 361
Query: 384 WVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFT 443
+ DG I GN + A ++ +IG+ V ++T SF
Sbjct: 362 Y---DGTPITYHTMGNYY----------ANAMPALMMMMEMWKQIGVNVVMKTYAPGSFP 408
Query: 444 DLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYR--KDLDEALDKMGTTVDPEE 501
+ ++ ++ F V++ + ++ + +E K+ + +E
Sbjct: 409 PDNQTWIRNWSNGQWMTDAYATIVPEFGPNGQVQKRWGWKAPAEFNELCQKVTVLPNGKE 468
Query: 502 RQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDV 535
R I + AP V LY A RKDV
Sbjct: 469 RFDAYNRMRDIFEEEAPAVILYQPYDVYAARKDV 502
>sp|P06202|OPPA_SALTY PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|72428|pir||QREBOA oligopeptide-binding protein
precursor - Salmonella typhimurium
>gi|47802|emb|CAA29039.1| (X05491) Opp A (AA1-542)
[Salmonella typhimurium] >gi|47808|emb|CAA27785.1|
(X04194) precursor polypeptide [Salmonella typhimurium]
Length = 542
Score = 123 bits (306), Expect = 5e-27
Identities = 139/543 (25%), Positives = 221/543 (40%), Gaps = 67/543 (12%)
Query: 7 KTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLD 66
K+L+ + AL+AA TPT G + +T LV + +LD
Sbjct: 7 KSLIAAGILTALIAA------TPTAADVPAGVQLADKQT--------LVRNNGSEVQSLD 52
Query: 67 PQKSTWV---DITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALG 123
P K V +++ L F L+ G PG+AE WE ++D KV TFHLR+ + + G
Sbjct: 53 PHKIEGVPESNVSRDL-FEGLLISDVEGHPSPGVAEKWE-NKDFKVWTFHLRENAKWSDG 110
Query: 124 NPITAEDVKFVFDRLMNPETRSPMAP------------LVLG--PLKE--VKVIDDYTVQ 167
P+TA D + + RL +P T SP A ++ G P + VK +DD+T +
Sbjct: 111 TPVTAHDFVYSWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFE 170
Query: 168 LIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT-GPYYVVKWVRGAYIEY 226
+ EP P L P + K EK G T G Y + WV I
Sbjct: 171 VTLSEPV-PYFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVL 229
Query: 227 KRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD-VPPEFY 284
+RNP YW I + + I T V+ +++G I + + +P E +
Sbjct: 230 ERNPQYWDN-----------AKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELF 278
Query: 285 KDLAND-PN-VEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLA 342
+ L + PN V + P L +Y N QK PFND RVR A+ +A++R+ I+
Sbjct: 279 QKLKKEIPNEVRVDPYL--CTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGD 336
Query: 343 VPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFI 402
+P + P +G E+ K E+AK+LLAEAG+ DK
Sbjct: 337 LPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFT--------ADK---PLT 385
Query: 403 VEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRY--GL 460
++ +T +L + +G+ V + E +F D +G + +
Sbjct: 386 FDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADY 445
Query: 461 QDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMV 520
+ L S + D+ + D +R + +AE+ L + +V
Sbjct: 446 NEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIV 505
Query: 521 PLY 523
P+Y
Sbjct: 506 PVY 508
>pir||H75413 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6459037|gb|AAF10860.1|AE001976_3 (AE001976)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 527
Score = 123 bits (306), Expect = 5e-27
Identities = 135/538 (25%), Positives = 234/538 (43%), Gaps = 80/538 (14%)
Query: 46 TAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGL-------VFATLINM--GTNGKIIPG 96
TAA + LV G +P +L+P +IT G+ ++ TLI+ GT +++PG
Sbjct: 15 TAAAQSGTLVFGGNGEPVSLEP-----ANITDGISINVQRQIYDTLIDFKDGTT-QLVPG 68
Query: 97 LAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPE----------TRSP 146
LA SW+ + + TF LRKG++ G P A+ V F R + T
Sbjct: 69 LATSWKPNANATSWTFTLRKGVKFHDGTPFNADAVVFNLTRWWDKNHPYSLRKDGRTFEI 128
Query: 147 MAPLVLG-------PLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVG 199
+ L+ G +K V ++D TV++ +P P + GI S ++ G
Sbjct: 129 VGDLLGGYKGDATSVIKNVVKVNDSTVRVDLTKP-SSVFPDVIASGYFGIASPTAIKEQG 187
Query: 200 PVQFGQTPAG----TGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIR 254
++G TPAG TGP+ W G + N YW + + + T+
Sbjct: 188 -AKYG-TPAGKAVGTGPFIFQSWKSGDRVTLTANKNYWGTKAK------------VATVI 233
Query: 255 FRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYP 314
R IK+P ++E +AG I D+ P+ K + D N+ + + + ++ N +
Sbjct: 234 IRAIKDPSQRLNELRAGTIDFANDMVPDSLKAIQADKNLVAVKRPSFNVGFVSLNNRNKY 293
Query: 315 FNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEK 374
+ +VRQAI+MA+N++ I+ GL + P + Y+ Y +DP
Sbjct: 294 LKNAKVRQAISMALNKKAIVDAFWPGLGQSNASFVPPDLARYNSSK---VPADYKFDPAA 350
Query: 375 AKQLLAEAGWVDRDGDGILEDKNGNKFIVEMW---ISTGELEAPK-VAQIIQAQLAKIGI 430
AK+LLA+AG+ N F +++W +S +PK +A+ + A L+ IGI
Sbjct: 351 AKKLLADAGY-------------PNGFSMDLWYMPVSRPYFPSPKPIAEAMAADLSAIGI 397
Query: 431 KVKIRTVEESSFTDLVSKGL-HQMYLF----RYGLQDAQILLYMFHSKKGVKRMFFYRKD 485
KV ++T + + + + +K MY+ YG D Y + G + +
Sbjct: 398 KVNLKTEDWAKYLEDRNKAPGFDMYMIGWTGDYGHPDNFYSAY--YGPNGSSDIGYNSVQ 455
Query: 486 LDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
+ L+K ER+ + ++ + A +P+ + LA + V+G V +P
Sbjct: 456 IQNLLEKGRAAKTEAERKSIYGQIHELTYNAAYRIPIVHSQP-LAAARTYVKGWVPSP 512
>pir||G75577 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6460687|gb|AAF12392.1|AE001863_17 (AE001863)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 529
Score = 123 bits (306), Expect = 5e-27
Identities = 132/538 (24%), Positives = 235/538 (43%), Gaps = 68/538 (12%)
Query: 46 TAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGL---VFATLINMGTNGK-IIPGLAESW 101
++A LV+ + +P TL+ + +T + ++ LIN+ + PGLA SW
Sbjct: 13 SSAAASGTLVVAGSGEPATLE-SANAHDSVTMHVQRQIYDRLINVKPGSTDLAPGLATSW 71
Query: 102 EISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPE----------TRSPMAPLV 151
++D TF LR+G++ G P A+ V F R + T S +A L+
Sbjct: 72 APNKDATSWTFTLRRGVKFHDGTPFNADAVVFNLRRWWDKSDPNGLRDQGRTFSIVADLL 131
Query: 152 LGP-------LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFG 204
G +K + ++D V++ P P + GI S + G ++G
Sbjct: 132 GGYKGEKNAIIKNIVKVNDSVVRVDLTRP-NTVFPVQMSASYWGIASPAAIKAQG-AKYG 189
Query: 205 Q---TPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKE 260
T GTGP+ W G + + N YW + P ++T+ R IK+
Sbjct: 190 TPQGTAVGTGPFVFGSWRSGDRVTLRANTAYWGSK------------PKVDTLIIRSIKD 237
Query: 261 PFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRV 320
P ++E +AG + ++ D+ P+ K + D N+ + + L YIG N + + +V
Sbjct: 238 PNQRLNELRAGTVDLVGDLQPDDMKAIQADKNLVLYKRPSFNLGYIGLNNRNEYLKNPKV 297
Query: 321 RQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLA 380
RQAI+MAINR ++ GL +VP G++ + A Y +DP AK+LLA
Sbjct: 298 RQAISMAINRRAVVDAFWSGLG-RTDTSIVPPALGWATSSKVPA--DYKFDPAAAKKLLA 354
Query: 381 EAGWVDRDGDGILEDKNGNKFIVEMW---ISTGELEAPKV-AQIIQAQLAKIGIKVKIRT 436
EAG+ N F ++ W I+ PK A+ + A LA +GIKV ++T
Sbjct: 355 EAGY-------------PNGFTLDFWYMPITRSYFPQPKASAEAMAADLADVGIKVNLKT 401
Query: 437 VEESSFTDLVSKGLHQMYLFRYGL----QDAQILLYMFHSKKGVKRMFFYR-KDLDEALD 491
+ + + D + G ++ +F+ GL D ++ + + +LD L
Sbjct: 402 EDWAKYLDDLFAG--RLSMFQIGLIGDYGDPDYFYGALYNPTSTNDIGWNAPAELDTLLQ 459
Query: 492 KMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+ + + + R + ++ + +PL +A + V+G V++P++ + Y
Sbjct: 460 QARSGLTRQARAQAYARIHELTYNAGYRIPL-VHSQSVAAARSYVKGWVLSPFSSEPY 516
>emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii]
Length = 528
Score = 123 bits (306), Expect = 5e-27
Identities = 131/505 (25%), Positives = 225/505 (43%), Gaps = 67/505 (13%)
Query: 61 DPDTLDPQKSTWVDITTG-----LVFATLINMGTN-GKIIPGLAESWEISEDGKVITFHL 114
+P +LDPQ + D G +F LI N G PGLA+SW+IS DG V TF L
Sbjct: 37 EPSSLDPQLA---DDNVGSKMIDTMFKGLITGDPNTGGNKPGLAKSWDISPDGTVYTFTL 93
Query: 115 RKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VK 159
R+ I + G ITAE ++ + R++N ET S + +V +K ++
Sbjct: 94 REKIIWSDGVAITAEGIRKSYLRILNKETGSNYSEMVKSTIKNGQKYFDGQVSDSELGIR 153
Query: 160 VIDDYTVQLIYKEPYGPALPFLA--TMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVK 217
ID+ T+++ + P + L + P+ I E ++GQ + T P +V
Sbjct: 154 AIDEKTLEITLESPKPYFIDMLVHQSFIPIPIHIAE--------KYGQ--SWTNPENIV- 202
Query: 218 WVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
G + +R P K + N ++ I F + T ++ G + +
Sbjct: 203 -TSGPFKLKERIPNEKYVVEKNDKYYNSNQVEVQEITFYTTNDNSTAYKMYENGELDAIF 261
Query: 278 D-VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
+PP+ KDL + + +++ FN P ++ +VR+A+ +AI+RE +
Sbjct: 262 SAIPPDLIKDL--KLRSDYYSSAVNAIYFYAFNTHIKPLDNVKVRKALTLAIDRETLTYK 319
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
L+ P + P+ + YS YAK ++PE AK LLAEAG+
Sbjct: 320 VLDDGTTPTR-RITPNFSSYS-----YAKNLELFNPEIAKTLLAEAGY-----------P 362
Query: 397 NGNKF-IVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIRTVEESSFTDLVSKGLHQM- 453
NGN F I+++ +T E K+ + IQ Q KI I V++ E +++ + S G +++
Sbjct: 363 NGNGFPILKLKYNTSEAH-KKICEFIQNQWKKILNIDVELENEEWTTYLNTKSNGNYEIA 421
Query: 454 ---YLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAE 510
++ Y L + H + + +E + K +DP +RQ + +AE
Sbjct: 422 RAGWIGDYA-DPLTFLSILTHGYTQFSSHNYSSPEYNELIKKSDLELDPIKRQDILRKAE 480
Query: 511 KILID-GAPMVPLYARKVFLAYRKD 534
+I+I+ P+ P+Y +R D
Sbjct: 481 EIIIEKDFPIAPIYIYGNSYLFRND 505
>dbj|BAB13784.1| (AB038238) NikA [Vibrio parahaemolyticus]
Length = 546
Score = 123 bits (306), Expect = 5e-27
Identities = 130/507 (25%), Positives = 217/507 (42%), Gaps = 74/507 (14%)
Query: 42 PTETTAALKHKVLVIGYTRDPDTL------DPQKST-----WVDITTGLVFATLINMGTN 90
P AAL Y P+TL +P K W L+ +TL+ +
Sbjct: 5 PVLLIAALLCAFSTSSYASQPNTLFVALGDEPVKGFDSVLGWGKYGNPLIQSTLLKYNKD 64
Query: 91 GKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPL 150
++ LA SW++SED + +R I + + +TAEDV F F + + ++
Sbjct: 65 FELQGDLAISWQLSEDKLSWSIKIRSDILFSDLSSLTAEDVAFTF-----LQAKRTLSAH 119
Query: 151 VLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT 210
L LK+V V+ ++ K+P + F+ +GI K Y K + Q P G+
Sbjct: 120 DLSNLKDVVVLSPTHLRFDLKQP---DITFIDHFVSIGIVPKHAYSK----NYAQYPIGS 172
Query: 211 GPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
GPY V+W +G + + NP + Y PA I F F L FK
Sbjct: 173 GPYQFVQWKKGQSVTLRVNPNY---YAKKPAFNEL------VIVFGSESSRFAL---FKT 220
Query: 271 GNIHVLLDVPPEFYKDLANDPNVEMIPALE-----YVLHYIGF-NCQKYPFNDTRVRQAI 324
G +H L +P +F L + + I +++ + +H N + +D +RQA+
Sbjct: 221 GQLH-LTTLPQKFVSSLPKESKLWSINSVDNRGIVWPMHSTKEGNKESAISSDIAIRQAV 279
Query: 325 NMAINREEIIKYALEGLAVPVH--------GPLVPSMNGYSEKMEEYAKQKYPYDPEKAK 376
++AI+R II+ L G A P + GP+ PS ++ YD ++A+
Sbjct: 280 DLAIDRSVIIQQLLNGYAHPAYSVADGLPWGPMTPS--------------EHHYDVKRAQ 325
Query: 377 QLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRT 436
Q L AGW+D + DGI E +N + ++ G+ ++A I L IGIK+ I
Sbjct: 326 QTLTSAGWIDSNNDGIRE-RNSINAEMTLYYKAGDSVREELAITISQMLKPIGIKLDIVG 384
Query: 437 VEESSFTDLVSKGLH-QMYLFRYGLQDAQILLYMFHSK-KGV---KRMFFYRKDLDEALD 491
+ D ++K +H L +G A + +FHS GV + K++D +D
Sbjct: 385 AD----WDTIAKHMHNNPVLMGFGSHSANEIRSLFHSDYAGVDFYNSGLYQNKEVDHLID 440
Query: 492 KMGTTVDPEERQKYIEEAEKILIDGAP 518
+ +E +E++K++ P
Sbjct: 441 QAIHASSWQESLPLWQESQKLIEKDLP 467
>emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii]
Length = 528
Score = 122 bits (302), Expect = 1e-26
Identities = 131/504 (25%), Positives = 226/504 (43%), Gaps = 65/504 (12%)
Query: 61 DPDTLDPQKSTWVDITTG-----LVFATLINMGTN-GKIIPGLAESWEISEDGKVITFHL 114
+P +LDPQ + D G +F LI N G PGLA+SW+IS DG V TF L
Sbjct: 37 EPSSLDPQLA---DDNVGSKMIDTMFRGLITGDPNTGGNKPGLAKSWDISPDGTVYTFTL 93
Query: 115 RKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VK 159
R+ I + G ITAE ++ + R++N ET S A +V +K ++
Sbjct: 94 REKIIWSDGVAITAEGIRKSYLRILNKETGSNYAEMVKSTIKNGQKYFDGQVSDSELGIR 153
Query: 160 VIDDYTVQLIYKEPYGPALPFLA--TMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVK 217
ID+ T+++ + P + L + P+ I E ++GQ + T P +V
Sbjct: 154 AIDEKTLEITLESPKPYFIDMLVHQSFIPIPIHIAE--------KYGQ--SWTSPENIV- 202
Query: 218 WVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
G + +R P K + N ++ I F + T ++ + +
Sbjct: 203 -TSGPFKLKERIPNEKYVVEKNDKYYNSNQVEVQEITFYTTNDSSTAYKMYENKELDAIF 261
Query: 278 -DVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
+PP+ KDL + + +++ FN P ++ +VR+A+ +AI+RE +
Sbjct: 262 GSIPPDLIKDL--KLRSDYYSSAVNAIYFYAFNTYIKPLDNVKVRKALTLAIDRETLTYK 319
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
L+ P + P+ + YS YAK ++PE AK LLAEAG+
Sbjct: 320 VLDNGTTPTR-RIAPNFSSYS-----YAKNLELFNPEIAKTLLAEAGY-----------P 362
Query: 397 NGNKF-IVEMWISTGELEAPKVAQIIQAQLAKI-GIKVKIRTVEESSFTDLVSKGLHQMY 454
NGN F I+++ +T E K+ + IQ Q KI I V++ E +++ + S G +++
Sbjct: 363 NGNGFPILKLKYNTSEAH-KKICEFIQNQWKKILNIDVELENEEWTTYLNTRSNGNYEIA 421
Query: 455 LFRYGLQDAQILLYMFHSKKGVKRMF---FYRKDLDEALDKMGTTVDPEERQKYIEEAEK 511
+ A L ++ +G + + + +E + K +DP +RQ + +AE+
Sbjct: 422 RAGWIGDYADPLTFLSIFTQGYTQFSSHNYSSPEYNELIKKSDLELDPIKRQDILRKAEE 481
Query: 512 ILID-GAPMVPLYARKVFLAYRKD 534
I+I+ P+ P+Y +R D
Sbjct: 482 IIIEKDFPIAPIYIYGNSYLFRND 505
>sp|Q46863|YGIS_ECOLI PUTATIVE BINDING PROTEIN YGIS PRECURSOR >gi|7442327|pir||B65089
hypothetical protein b3020 - Escherichia coli (strain
K-12) >gi|882550|gb|AAA69188.1| (U28377) ORF_f535
[Escherichia coli] >gi|1789397|gb|AAC76056.1| (AE000384)
putative transport periplasmic protein [Escherichia coli
K12]
Length = 535
Score = 121 bits (300), Expect = 2e-26
Identities = 127/493 (25%), Positives = 210/493 (41%), Gaps = 63/493 (12%)
Query: 61 DPDTLDPQK---STWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKG 117
DP TLDPQK +T I L F L+ M G++ P AE WEI + GK FHLR G
Sbjct: 42 DPGTLDPQKVEENTAAQIVLDL-FEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSG 100
Query: 118 IRDALGNPITAEDVKFVFDRLMNPETRSPM------------APLVLGPLK----EVKVI 161
++ + G P+TAED + R ++P+T SP A +V G VK
Sbjct: 101 LQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT 160
Query: 162 DDYTVQLIYKEPYGPALPFLATM---PPLGIFSKEFYEKVGPV-QFGQTPAGTGPYYVVK 217
DD T+++ ++P +P+ TM P L K G + G + + +
Sbjct: 161 DDRTLEVTLEQP----VPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQ 216
Query: 218 WVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
WV I ++NP + ++ ++ + + + T + ++AG + L
Sbjct: 217 WVVNEKITARKNPKY----------RDAQHTVLQQVEYLALDNSVTGYNRYRAGEVD-LT 265
Query: 278 DVP----PEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEI 333
VP P K L + + +IP L Y FN +K PFND RVR+A+ + ++R+ I
Sbjct: 266 WVPAQQIPAIEKSLPGE--LRIIPRLN--SEYYNFNLEKPPFNDVRVRRALYLTVDRQLI 321
Query: 334 IKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGIL 393
+ L GL P P + G+S + ++ AK LL +AG+
Sbjct: 322 AQKVL-GLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGY--------- 371
Query: 394 EDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKG--L 450
+ E++ + +L K A + ++ K +G +V +RT+E ++ D G +
Sbjct: 372 --DASHPLRFELFYNKYDLH-EKTAIALSSEWKKWLGAQVTLRTMEWKTYLDARRAGDFM 428
Query: 451 HQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAE 510
+ DA L S + D L++ D +R ++AE
Sbjct: 429 LSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKRNALYQQAE 488
Query: 511 KILIDGAPMVPLY 523
I+ AP++P+Y
Sbjct: 489 VIINQQAPLIPIY 501
>sp|P23843|OPPA_ECOLI PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|7428797|pir||F64871 oligopeptide-binding protein
precursor - Escherichia coli >gi|304925|gb|AAB00918.1|
(M60918) periplasmic oligopeptide binding protein
[Escherichia coli] >gi|1787495|gb|AAC74325.1| (AE000222)
oligopeptide transport; periplasmic binding protein
[Escherichia coli K12] >gi|1805524|dbj|BAA16038.1|
(D90852) Periplasmic oligopeptide-binding protein
precursor. [Escherichia coli]
Length = 543
Score = 120 bits (299), Expect = 3e-26
Identities = 135/540 (25%), Positives = 215/540 (39%), Gaps = 67/540 (12%)
Query: 13 ALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW 72
+L AA V A + G G + +T LV + +LDP K
Sbjct: 8 SLVAAGVLAALMAGNVALAADVPAGVTLAEKQT--------LVRNNGSEVQSLDPHKIEG 59
Query: 73 V-------DITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNP 125
V D+ GL+ + L +G PG+AESW+ ++D KV TFHLRK + + G P
Sbjct: 60 VPESNISRDLFEGLLVSDL-----DGHPAPGVAESWD-NKDAKVWTFHLRKDAKWSDGTP 113
Query: 126 ITAEDVKFVFDRLMNPETRSPMAPLVL--------------GPLKE--VKVIDDYTVQLI 169
+TA+D + + R ++P T SP A + P+ + VK IDD+T+++
Sbjct: 114 VTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVT 173
Query: 170 YKEPYGPALPFLATMPPLGIFSKEFYEKVGP--VQFGQTPAGTGPYYVVKWVRGAYIEYK 227
EP P L P K EK G Q G G Y + WV I +
Sbjct: 174 LSEPV-PYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTN-GAYTLKDWVVNERIVLE 231
Query: 228 RNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD-VPPEFYK 285
R+P YW N I + + I T V+ +++G I + + +P E ++
Sbjct: 232 RSPTYW-----------NNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTNNSMPIELFQ 280
Query: 286 DLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPV 345
L + E+ +Y N QK PFND RVR A+ + ++R+ I+ +P
Sbjct: 281 KLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGNMPA 340
Query: 346 HGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEM 405
+G P +G E+ E+AK+LLAEAG+ DK + +
Sbjct: 341 YGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYT--------ADK---PLTINL 389
Query: 406 WISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRY--GLQDA 463
+T +L IG+ VK+ E +F D +G + + +
Sbjct: 390 LYNTSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEP 449
Query: 464 QILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
L S + + D + + D +R +AE+ L + +VP+Y
Sbjct: 450 TSFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVY 509
>sp|P71370|OPPA_HAEIN PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|1574679|gb|AAC22778.1| (U32792) oligopeptide ABC
transporter, periplasmic-binding protein (oppA)
[Haemophilus influenzae Rd]
Length = 541
Score = 119 bits (295), Expect = 9e-26
Identities = 126/500 (25%), Positives = 208/500 (41%), Gaps = 57/500 (11%)
Query: 54 LVIGYTRDPDTLDPQKSTWVDITTGL--VFATLINMGTNGKIIPGLAESWEISEDGKVIT 111
+VI +P + DP K+ V + + L+ + GK+ PG AESWE + D K T
Sbjct: 35 IVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGAAESWENTPDFKTWT 94
Query: 112 FHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMA------------PLVLGPLKE-- 157
FHLRK + + G+P+TA D F + RL++P T +P A ++ G K
Sbjct: 95 FHLRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAE 154
Query: 158 --VKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQF-GQTPAGTGPYY 214
V+ DDYT + P P T L + EK+G + G G Y
Sbjct: 155 LGVEXKDDYTFVVHTTNPV-PYTVSXXTHQSLLPLPXKVVEKLGDAWVKKENYVGNGAYK 213
Query: 215 VVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNI 273
+ + IE++RNP YW N I + F I+ P T V+ ++AG++
Sbjct: 214 LANHIINEKIEFERNPLYW-----------NDKETVINSATFLAIENPSTDVARYRAGDL 262
Query: 274 HVL-LDVPPEFYKDLANDPNVEMIPALEYVLHYIG-----FNCQKYPFNDTRVRQAINMA 327
+ +PPE + L + +P YV +G N +K PF++ +R+A+N++
Sbjct: 263 DMTSYGLPPEQFAKLQKE-----LPGEVYVTRTLGTYSYELNNKKAPFDNVNIRKALNLS 317
Query: 328 INREEIIKYALEGLAVPVHGPLVPSM--NGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWV 385
++R I L P + P+ G+ + Y+K+ E+A +LL EAG+
Sbjct: 318 LDRNVITDKVLGQGQTPTY-VFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGY- 375
Query: 386 DRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDL 445
N KF + + + A + K I VK+ E ++ D
Sbjct: 376 --------SKANPLKFSILYNTNENHKKVAIAAASMWKANTKGLIDVKLENQEWKTYIDS 427
Query: 446 VSKGLHQMYLFRYGLQDAQILLY--MFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQ 503
G + + + Q + F S + + D+A+ + D E R
Sbjct: 428 RRAGRYDVARAGWNADYNQATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAATDAEGRA 487
Query: 504 KYIEEAEKILIDGAPMVPLY 523
K +AE+IL +VP++
Sbjct: 488 KAYAKAEEILGKDYGIVPIF 507
>pir||H75141 oligopeptide-binding protein appa precursor PAB0627 - Pyrococcus
abyssi (strain Orsay) >gi|5458360|emb|CAB49849.1|
(AJ248285) OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR
[Pyrococcus abyssi]
Length = 644
Score = 118 bits (292), Expect = 2e-25
Identities = 131/497 (26%), Positives = 220/497 (43%), Gaps = 51/497 (10%)
Query: 57 GYTRDPDTLDPQKSTWVDIT--TGLVFATL-INMGTNGKIIPGLAES--WEISEDGKVIT 111
G P+ +P S W +T GL++ TL I K+ P LAES W +V+
Sbjct: 49 GLWSQPNNFNPTVS-WAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVV- 106
Query: 112 FHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYK 171
L++G+ G P+TAEDVKF FD + S +P + G LKEVKV+D+ TV I+
Sbjct: 107 --LKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLS-YSP-IWGWLKEVKVVDNRTVDFIFS 162
Query: 172 EPYGPALPFLATMPPLGIFSKEFYEKVG-PVQFGQT--PAGTGPYYVVKWVRGAYIEYKR 228
EP+ + + + I + ++ + P F T P G+G Y + K + +I +
Sbjct: 163 EPHYEEWKY--WLYNIAIIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRN 220
Query: 229 NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLA 288
+ +W +Y PA P YI + I+ +S G++ P A
Sbjct: 221 DKWWGIKYYGKPA-----PKYIVYV---IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKA 272
Query: 289 NDPNVEMIPALEYVL----HYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVP 344
V Y L ++ N QK P N+ R+AI AIN +EI A + P
Sbjct: 273 KYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKP 332
Query: 345 -------VHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKN 397
+ P+ + Y E +++Y + YDP KA ++L + G+ D +GDG E +
Sbjct: 333 ADPTGLLIDYPVFKKIY-YPEAVKKYG---FTYDPAKANEILDQLGYKDINGDGYRETPD 388
Query: 398 GNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFR 457
G + + G + ++A++I QL +GI+V + + + D ++KG M +
Sbjct: 389 GKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINN 448
Query: 458 YGLQ----DAQILLYMFHSKKGV--KRMF------FYRKDLDEALDKMGTTVDPEERQKY 505
+G Q Q ++F+ K + + + + E L + T D ++ +Y
Sbjct: 449 FGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQY 508
Query: 506 IEEAEKILIDGAPMVPL 522
E ++I + P +PL
Sbjct: 509 YHELQEIFLKDLPYIPL 525
>pir||S74819 extracellular solute-binding protein - Synechocystis sp. (strain
PCC 6803) >gi|1652862|dbj|BAA17780.1| (D90909)
extracellular solute-binding protein family
[Synechocystis sp.]
Length = 582
Score = 117 bits (290), Expect = 4e-25
Identities = 124/509 (24%), Positives = 216/509 (42%), Gaps = 68/509 (13%)
Query: 84 LINMGTNGKIIPGLA------ESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDR 137
L + G ++P LA E+ ++ DG +T+ L+ + + G P +AEDV F +
Sbjct: 79 LASFDQEGNLVPFLAAEIPSVENGGVAADGLSVTWKLKPDVLWSDGQPFSAEDVAFTYKF 138
Query: 138 LMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPA--LPFLAT---MPPLGIFSK 192
L +P+T + + +V+ +D TV++ +KEP PA LPF+ + + P I+
Sbjct: 139 LSDPKTGATSTG-TYEAIAKVEALDKNTVKITFKEP-NPAWFLPFVGSEGMILPQHIYKD 196
Query: 193 EFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIET 252
EK P GTGPY V + G + Y+ NP+++ KN G +E
Sbjct: 197 FVGEKARQAPANLLPIGTGPYRVTSFKPGDVVLYEVNPHYRDR-------KNIGFQQVEI 249
Query: 253 IRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQ- 311
V + + + L V + LA E++ L + + FN
Sbjct: 250 KGGGDATSAARAVLQTGDADFALNLQVEDNILQSLAQGGKGEIVADLGSLSERVIFNLSD 309
Query: 312 -------------KYP---FNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNG 355
K+P D VR+AI + I+R+ I K P LV
Sbjct: 310 PDPARTNGDRSSVKFPHPFLQDPLVRKAITLGIDRDLIAKQLYGVTGQPTANVLVLP--- 366
Query: 356 YSEKMEEYAKQK--YPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELE 413
++YA Q + ++P +A+QLL +AGW D +G+GI DK+G + + S L
Sbjct: 367 -----QQYASQNTSFQFNPTEAQQLLDQAGWKDSNGNGI-RDKDGIELQMVFQTSVNPLR 420
Query: 414 APKVAQIIQAQLAKIGIKVKIRTVEESSF-------TDLVSKGLHQMYLFRYGLQDAQIL 466
K Q+I+ L IG+ V++++++ S F D + + + +F G +
Sbjct: 421 -QKTQQVIKQTLQAIGVGVELKSIDPSVFFSGDPANPDTLERFQGDLSMFTTGNTNPDPS 479
Query: 467 LYM-----------FHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILID 515
YM + G + + D+ K +DPE+RQ+ + +L+D
Sbjct: 480 KYMQTFTCGAIPTAENQWSGDNYGRYCSAEYDQLWQKAVAELDPEKRQQLFIQMNDLLVD 539
Query: 516 GAPMVPLYARKVFLAYRKDVVEGIVINPY 544
+VP+ R + D ++G+ + P+
Sbjct: 540 DYILVPVVHRASVVGV-GDRLDGVALTPW 567
>pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
>gi|2194062|pdb|1JEU|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kek >gi|2194057|pdb|1JEV|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kwk >gi|1310734|pdb|2OLB|A Chain A, Oligopeptide
Binding Protein (Oppa) Complexed With Tri-Lysine
>gi|4139566|pdb|1B32|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kmk >gi|6729871|pdb|1B4Z|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kdk >gi|6137589|pdb|1QKB|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kvk
>gi|4389358|pdb|1B46|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kpk >gi|6137472|pdb|1QKA|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Krk >gi|4389026|pdb|1B51|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Ksk
>gi|4139989|pdb|1B1H|A Chain A, Oligo-Peptide Binding
ProteinTRIPEPTIDE (LYS HPE LYS) Complex
>gi|4139619|pdb|1B3F|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Khk >gi|6729873|pdb|1B58|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kyk >gi|4389332|pdb|1B5J|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kqk
>gi|4139999|pdb|1B6H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl-Norvalyl- Lysine
>gi|4558066|pdb|1B9J|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Klk >gi|2392717|pdb|2RKM|A
Chain A, Structure Of Oppa Complexed With Lys-Lys
>gi|4139991|pdb|1B2H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl-Ornithyl- Lysine
>gi|4139980|pdb|1B0H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Napthylalanyl-Lysine
>gi|4139995|pdb|1B4H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Diaminobutyric Acid-Lysine
>gi|4139997|pdb|1B5H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Diaminopropanoic
Acid-Lysine >gi|4389330|pdb|1B5I|A Chain A,
Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
>gi|4139623|pdb|1B3L|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kgk >gi|4139625|pdb|1B3L|C
Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kgk >gi|4139621|pdb|1B3G|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kik
>gi|4139993|pdb|1B3H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Cyclohexylalanyl-Lysine
>gi|4139926|pdb|1B7H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Norleucyl-Lysine
>gi|1310797|pdb|1OLC|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Lys-Lys-Lys-Ala
>gi|6729986|pdb|1B40|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kfk >gi|2392536|pdb|1RKM|
Structure Of Oppa >gi|4388950|pdb|1B52|A Chain A,
Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
>gi|576223|pdb|1OLA|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With A Four-Residue Peptide
Length = 517
Score = 116 bits (289), Expect = 5e-25
Identities = 128/498 (25%), Positives = 205/498 (40%), Gaps = 53/498 (10%)
Query: 52 KVLVIGYTRDPDTLDPQKSTWV---DITTGLVFATLINMGTNGKIIPGLAESWEISEDGK 108
+ LV + +LDP K V +++ L F L+ G PG+AE WE ++D K
Sbjct: 13 QTLVRNNGSEVQSLDPHKIEGVPESNVSRDL-FEGLLISDVEGHPSPGVAEKWE-NKDFK 70
Query: 109 VITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAP------------LVLG--P 154
V TFHLR+ + + G P+TA D + + RL +P T SP A ++ G P
Sbjct: 71 VWTFHLRENAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIANIDDIIAGKKP 130
Query: 155 LKE--VKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT-G 211
+ VK +DD+T ++ EP P L P + K EK G T G
Sbjct: 131 ATDLGVKALDDHTFEVTLSEPV-PYFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNG 189
Query: 212 PYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
Y + WV I +RNP YW I + + I T V+ +++
Sbjct: 190 AYKLKNWVVNERIVLERNPQYWDN-----------AKTVINQVTYLPISSEVTDVNRYRS 238
Query: 271 GNIHVLLD-VPPEFYKDLAND-PN-VEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMA 327
G I + + +P E ++ L + PN V + P L +Y N QK PFND RVR A+ +A
Sbjct: 239 GEIDMTYNNMPIELFQKLKKEIPNEVRVDPYL--CTYYYEINNQKAPFNDVRVRTALKLA 296
Query: 328 INREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDR 387
++R+ I+ +P + P +G E+ K E+AK+LLAEAG+
Sbjct: 297 LDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFT-- 354
Query: 388 DGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVS 447
DK ++ +T +L + +G+ V + E +F D
Sbjct: 355 ------ADK---PLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRH 405
Query: 448 KGLHQMYLFRY--GLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKY 505
+G + + + L S + D+ + D +R +
Sbjct: 406 QGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSEL 465
Query: 506 IEEAEKILIDGAPMVPLY 523
+AE+ L + +VP+Y
Sbjct: 466 YAKAEQQLDKDSAIVPVY 483
>pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
Length = 517
Score = 116 bits (289), Expect = 5e-25
Identities = 128/498 (25%), Positives = 205/498 (40%), Gaps = 53/498 (10%)
Query: 52 KVLVIGYTRDPDTLDPQKSTWV---DITTGLVFATLINMGTNGKIIPGLAESWEISEDGK 108
+ LV + +LDP K V +++ L F L+ G PG+AE WE ++D K
Sbjct: 13 QTLVRNNGSEVQSLDPHKIEGVPESNVSRDL-FEGLLISDVEGHPSPGVAEKWE-NKDFK 70
Query: 109 VITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAP------------LVLG--P 154
V TFHLR+ + + G P+TA D + + RL +P T SP A ++ G P
Sbjct: 71 VWTFHLRENAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIANIDDIIAGKKP 130
Query: 155 LKE--VKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT-G 211
+ VK +DD+T ++ EP P L P + K EK G T G
Sbjct: 131 ATDLGVKALDDHTFEVTLSEPV-PYFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNG 189
Query: 212 PYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
Y + WV I +RNP YW I + + I T V+ +++
Sbjct: 190 AYKLKNWVVNERIVLERNPQYWDN-----------AKTVINQVTYLPISSEVTDVNRYRS 238
Query: 271 GNIHVLLD-VPPEFYKDLAND-PN-VEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMA 327
G I + + +P E ++ L + PN V + P L +Y N QK PFND RVR A+ +A
Sbjct: 239 GEIDMTYNNMPIELFQKLKKEIPNEVRVDPYL--CTYYYEINNQKAPFNDVRVRTALKLA 296
Query: 328 INREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDR 387
++R+ I+ +P + P +G E+ K E+AK+LLAEAG+
Sbjct: 297 LDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFT-- 354
Query: 388 DGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVS 447
DK ++ +T +L + +G+ V + E +F D
Sbjct: 355 ------ADK---PLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRH 405
Query: 448 KGLHQMYLFRY--GLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKY 505
+G + + + L S + D+ + D +R +
Sbjct: 406 QGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSEL 465
Query: 506 IEEAEKILIDGAPMVPLY 523
+AE+ L + +VP+Y
Sbjct: 466 YAKAEQQLDKDSAIVPVY 483
>sp|P24141|OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR
>gi|40005|emb|CAA39787.1| (X56347) OppA [Bacillus
subtilis]
Length = 545
Score = 116 bits (288), Expect = 6e-25
Identities = 140/584 (23%), Positives = 256/584 (42%), Gaps = 71/584 (12%)
Query: 2 RQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRD 61
R IV +L+F L V + C GGT + + G S +TT L I +
Sbjct: 4 RWSIVTLMLIFTL----VLSACGFGGTGSNGE---GKKDSKGKTT-------LNINIKTE 49
Query: 62 PDTLDPQKSTWVDITTGLV----FATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKG 117
P +L P + D +G V F L + +G+ G+A E S+DGK TF +R G
Sbjct: 50 PFSLHPGLAN--DSVSGGVIRQTFEGLTRINADGEPEEGMASKIETSKDGKTYTFTIRDG 107
Query: 118 IRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVL------------GPLKE--VKVIDD 163
++ + G+P+TA+D ++ + ++P S A + G L + VK ++D
Sbjct: 108 VKWSNGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDVAVKAVND 167
Query: 164 YT--VQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRG 221
T V+L PY L T P+ E +K G GP+ + W
Sbjct: 168 KTLKVELNNPTPYFTELTAFYTYMPINEKIAEKNKKWN-TNAGDDYVSNGPFKMTAWKHS 226
Query: 222 AYIEYKRN-PYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIH----VL 276
I ++N YW ++ ++ I +I T + +F+AG + L
Sbjct: 227 GSITLEKNDQYWDKD-----------KVKLKKIDMVMINNNNTELKKFQAGELDWAGMPL 275
Query: 277 LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
+P E L D ++ + P +++ FN + P ++ +R+A+ +++R+ I+K
Sbjct: 276 GQLPTESLPTLKKDGSLHVEPIAG--VYWYKFNTEAKPLDNVNIRKALTYSLDRQSIVKN 333
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
+G +P + P+M G+ + E Y K D + AK+ L E G + G+ +
Sbjct: 334 VTQGEQMPAMAAVPPTMKGFEDNKEGYFKDN---DVKTAKEYL-EKGLKEM---GLSKAS 386
Query: 397 NGNKFIVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKGLHQMYL 455
+ K +++ +T + A K+AQ +Q K +G+ V++ E + + D + +Q+
Sbjct: 387 DLPK--IKLSYNTDDAHA-KIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGR 443
Query: 456 FRY--GLQDAQILLYMFHSKKGVKR-MFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKI 512
+ D L +F K G + + + L++ T D +R + +++AE I
Sbjct: 444 MGWLGDFNDPINFLELFRDKNGGNNDTGWENPEFKKLLNQSQTETDKTKRAELLKKAEGI 503
Query: 513 LIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYLDDAKLK 556
ID P+ P+Y + + ++G+++ P T +VY +A K
Sbjct: 504 FIDEMPVAPIYF-YTDTWVQDENLKGVIM-PGTGEVYFRNAYFK 545
>pir||E72282 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981776|gb|AAD36298.1|AE001778_19 (AE001778)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 557
Score = 115 bits (286), Expect = 1e-24
Identities = 124/473 (26%), Positives = 205/473 (43%), Gaps = 40/473 (8%)
Query: 76 TTGLVFATLINMGT-NGKIIPGLAESWE-ISEDGKVITFHLRKGIRDALGNPITAEDVKF 133
T GLV+ L N K P LAE E +S + V+T LRKG+R G P+TA+DV F
Sbjct: 53 TIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLT--LRKGLRWQDGVPLTADDVVF 110
Query: 134 VFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEP-YGPALPFLATMP--PLGIF 190
F+ + T +P V L ++ +D+ T++ ++ +P Y L P P I+
Sbjct: 111 TFE-IAKKYTGISYSP-VWNWLGRIERVDERTLKFVFSDPRYQEWKQMLINTPIVPKHIW 168
Query: 191 SKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWK-REYRPDPALKNPGPPY 249
+ E+V + P G+GPYYV W + K +W RE DP P
Sbjct: 169 ENKTEEEVLQAA-NENPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPK-----PER 222
Query: 250 IETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLA------NDPNVEMIPALEYVL 303
I +R ++ + + + L P K N P M+PA +
Sbjct: 223 IVELRVLSNNVAVGMLMKGELDWSNFFLPGVPVLKKAYGIVTWYENAPY--MLPANTAGI 280
Query: 304 HYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEY 363
+ N KYP + R+A+ AIN E+I+ A E + + + + GY + +
Sbjct: 281 Y---INVNKYPLSIPEFRRAMAYAINPEKIVTRAYENMVTAANPAGILPLPGYMKYYPKE 337
Query: 364 AKQKY--PYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQII 421
KY YDPE AK++L E G+ D + DG ED NG F + + G + Q I
Sbjct: 338 VVDKYGFKYDPEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSI 397
Query: 422 QAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHS---KKGVKR 478
L K+GI V+ + + S + D + G + L + + + F+ V+
Sbjct: 398 AEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVES 457
Query: 479 MFFY--------RKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
+ Y +++ LD++ + D + ++ + + +IL+ P +PL+
Sbjct: 458 EYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLW 510
>pir||A38447 oligopeptide ABC transport system substrate-binding protein oppA
precursor - Bacillus subtilis >gi|143603|gb|AAA62687.1|
(M57689) sporulation protein [Bacillus subtilis]
>gi|2633497|emb|CAB13000.1| (Z99110) oligopeptide ABC
transporter (binding protein) [Bacillus subtilis]
Length = 545
Score = 115 bits (286), Expect = 1e-24
Identities = 136/582 (23%), Positives = 252/582 (42%), Gaps = 67/582 (11%)
Query: 2 RQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRD 61
R IV +L+F L L A G G G+ G G ++ L + ++
Sbjct: 4 RWSIVTLMLIFTLV--LSACGFGGSGS-------NGEGKKDSKGKTTLNINIKTEPFSLH 54
Query: 62 PDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDA 121
P + S V T F L + +G+ G+A E S+DGK TF +R G++ +
Sbjct: 55 PGLANDSVSGGVIRQT---FEGLTRINADGEPEEGMASKIETSKDGKTYTFTIRDGVKWS 111
Query: 122 LGNPITAEDVKFVFDRLMNPETRSPMAPLVL------------GPLKE--VKVIDDYT-- 165
G+P+TA+D ++ + ++P S A + G L + VK ++D T
Sbjct: 112 NGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDVAVKAVNDKTLK 171
Query: 166 VQLIYKEPYGPALPFLATMPPLGIFSKEFYE--KVGPVQFGQTPAGTGPYYVVKWVRGAY 223
V+L PY L T P+ +K+ E K G GP+ + W
Sbjct: 172 VELNNPTPYFTELTAFYTYMPI---NKKIAEKNKKWNTNAGDDYVSNGPFKMTAWKHSGS 228
Query: 224 IEYKRN-PYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIH----VLLD 278
I ++N YW ++ ++ I +I T + +F+AG + L
Sbjct: 229 ITLEKNDQYWDKD-----------KVKLKKIDMVMINNNNTELKKFQAGELDWAGMPLGQ 277
Query: 279 VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYAL 338
+P E L D ++ + P +++ FN + P ++ +R+A+ +++R+ I+K
Sbjct: 278 LPTESLPTLKKDGSLHVEPIAG--VYWYKFNTEAKPLDNVNIRKALTYSLDRQSIVKNVT 335
Query: 339 EGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNG 398
+G +P + P+M G+ + E Y K D + AK+ L E G + G+ + +
Sbjct: 336 QGEQIPAMAAVPPTMKGFEDNKEGYFKDN---DVKTAKEYL-EKGLKEM---GLSKASDL 388
Query: 399 NKFIVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKGLHQMYLFR 457
K +++ +T + A K+AQ +Q K +G+ V++ E + + D + +Q+
Sbjct: 389 PK--IKLSYNTDDAHA-KIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGRMG 445
Query: 458 Y--GLQDAQILLYMFHSKKGVKR-MFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILI 514
+ D L +F K G + + + L++ T D +R + +++AE I I
Sbjct: 446 WLGDFNDPINFLELFRDKNGGNNDTGWENPEFKKLLNQSQTETDKTKRAELLKKAEGIFI 505
Query: 515 DGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVYLDDAKLK 556
D P+ P+Y + + ++G+++ P T +VY +A K
Sbjct: 506 DEMPVAPIYF-YTDTWVQDENLKGVIM-PGTGEVYFRNAYFK 545
>pir||B75332 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6459743|gb|AAF11508.1|AE002034_1 (AE002034)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 520
Score = 115 bits (286), Expect = 1e-24
Identities = 121/477 (25%), Positives = 200/477 (41%), Gaps = 59/477 (12%)
Query: 92 KIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMA--- 148
+++P LA SW+ + V TF LRKG++ G P A+ V F R + +
Sbjct: 64 ELVPALATSWKSNAAATVWTFTLRKGVKFHDGTPFNADAVIFNVSRWWDKKNAYRYGATF 123
Query: 149 ---PLVLGP--------LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEK 197
P +LG L+ V D TV +P A P L GI S +K
Sbjct: 124 DVWPQLLGGNKGEAGSLLRSVSKSGD-TVVFTLNKPV-TAFPALIGSYYFGIASPTAVKK 181
Query: 198 VGPVQFGQTPAG----TGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIET 252
G ++G TPAG TG + + W G + ++ NP YW ++
Sbjct: 182 QG-TRYG-TPAGSAVGTGAFILESWKAGDRLNFRPNPNYWGTRST------------LDR 227
Query: 253 IRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQK 312
+ FR IK+P ++E +AG + ++ PE + D + ++ + + + N +
Sbjct: 228 LVFRFIKDPAQRLNEVRAGTVDFTSNLNPEATAQIKADKRLTLVLPTSFNVGLLNMNVRH 287
Query: 313 YPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDP 372
+ +VR+AI A+NR I+ L + L PSM + K K +
Sbjct: 288 PALKNAKVREAIRFAVNRPAIVDAFWGELGSVDNSMLPPSMAWANSKNVPPVK----VNA 343
Query: 373 EKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMW---ISTGELEAPK-VAQIIQAQLAKI 428
+ AK+LL EAG+ N F +++W IS L PK VA+ I A L I
Sbjct: 344 QVAKRLLTEAGY-------------PNGFSIDLWYPSISRNYLPTPKPVAEAIAADLGAI 390
Query: 429 GIKVKIRTVEESSFTDLVSKGLHQMYLFRYG--LQDAQILLYMFHSKKGVKRMFFYRKDL 486
GIKV ++T + + + G+ QMYL+ +G D F+ KG + F ++
Sbjct: 391 GIKVNLKTEDWPKYLEDRRAGVFQMYLYGWGGDYNDPDNFYSAFYGDKGSDDIGFNPGNI 450
Query: 487 DEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
L+K + ++ Y ++ ++ + +PL A + V+G + P
Sbjct: 451 LNTLNKGRAALTQAQKAPYYKQLHELTYNANVRLPL-VHSTAPAAARTYVKGWITGP 506
>pir||A70141 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-3) homolog - Lyme disease spirochete
>gi|2688226|gb|AAC66706.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-3) [Borrelia burgdorferi]
Length = 541
Score = 115 bits (285), Expect = 1e-24
Identities = 129/521 (24%), Positives = 223/521 (42%), Gaps = 73/521 (14%)
Query: 62 PDTLDPQKSTWVDITTGL-----VFATLINMGTN-GKIIPGLAESWEISEDGKVITFHLR 115
P +LDP VD T G +F+ L+ + T GK+ PGLA++WE S+D K F+LR
Sbjct: 47 PSSLDPHL---VDETIGARILEQIFSGLLTLNTKTGKLKPGLAKNWEASKDKKTYQFYLR 103
Query: 116 KGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VKV 160
+ + G ITAE ++ F R++N ET S ++ +K +K
Sbjct: 104 DNLFWSDGVEITAEGIRKSFLRILNKETGSTNVDMLKSIIKNGQEYFDGKVSDSELGIKA 163
Query: 161 IDDYTVQLIYKEPYGPALPFL---ATMP-PLGIFSKEFYEKVGPVQFGQTPAGTGPYYVV 216
ID T+++ P L L A MP P+ + K P + +GP+ +
Sbjct: 164 IDSKTLEITLTAPKPYFLELLLHYAFMPVPIHVIEKYKGNWTSP----ENMVTSGPFKLK 219
Query: 217 KWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
K + I +++N +R Y N ++ + + T+ + +K I +
Sbjct: 220 KRLPNEKIIFEKN---ERYY-------NAKEVELDELVYITSDNDLTVYNMYKNNEIDAI 269
Query: 277 LD-VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
+ +PP+ ++ + ++ FN + P +D RVR+A+ +AI+RE +
Sbjct: 270 FNSIPPDIVNEIKLQK--DYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAIDRETLTY 327
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
L VP + P + Y+ Y K+ +DPEK+K+LLA+AG+
Sbjct: 328 KVLNDGTVPTR-EITPDLKNYN-----YGKKLALFDPEKSKKLLADAGY----------- 370
Query: 396 KNGNKF-IVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMY 454
NG F ++ + +T E K+A IQ Q KI + + + E+ S+
Sbjct: 371 PNGKGFPMLTLKYNTNETH-KKIAAFIQNQWKKI-LNINLMLTNENWPVLTNSRNTGNFE 428
Query: 455 LFRYG----LQDAQILLYMFHSKKGVKRMFFYRK-DLDEALDKMGTTVDPEERQKYIEEA 509
+ R G D +F + + Y + D+ + + DP +R++ + +A
Sbjct: 429 IIRVGRIGEYLDPHTYFTIFTRENSQLASYGYSNLEFDKLIRESDLEKDPIKRKQLLRKA 488
Query: 510 EKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
E I+I+ P P+Y +R D G NP +VY
Sbjct: 489 ESIIIEKDFPAAPIYIYSGHYLFRNDKWTG--WNPNVSEVY 527
>pir||E72215 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4982324|gb|AAD36811.1|AE001813_3 (AE001813)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 642
Score = 115 bits (285), Expect = 1e-24
Identities = 102/376 (27%), Positives = 165/376 (43%), Gaps = 56/376 (14%)
Query: 92 KIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLV 151
K++P + ES+ +SEDG TF+LRK R + G+P+TA D +F + R +PET P PL
Sbjct: 67 KVVPAVCESYTVSEDGLTYTFYLRKDKRWSNGDPVTAYDFEFAWKRAASPET--PTLPLW 124
Query: 152 LGPLK------------------EVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKE 193
P++ VK +DDYT+Q+ P + L + + K
Sbjct: 125 ASPVQYIKNVYDCKSGAKPLDELGVKALDDYTLQVTLSRPMPSFINMLVLGGAMPLHRKT 184
Query: 194 FYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETI 253
E + G GPY + + I RN Y+ ++ P ++ I
Sbjct: 185 VQEHPEDWWKPEYFVGNGPYVIESFTPNYEIVLVRNKYYVGDF----------PGNVDRI 234
Query: 254 RFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKY 313
++K + ++ AG I + Y + + E + ++G+ +
Sbjct: 235 ---VLKAGGLGLQQYLAGEIDAVFITAVGDYVFALKNKQLSKELHEESGVQWVGYEITRS 291
Query: 314 ---PFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPY 370
F+D R+R+A+ MAI+++ + L G+A+P H P SE E A + PY
Sbjct: 292 LSPVFDDIRIRKALAMAIDKKVLTDIVLGGMAIPTHAYCSPD----SEIAE--AVKGIPY 345
Query: 371 DPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKI-G 429
DPE+AK+LLAEAG+ NG F + TG + VA+ + Q K+ G
Sbjct: 346 DPEQAKKLLAEAGY-----------PNGKGFPKVKFYITG--ASDPVAEALVDQWKKVLG 392
Query: 430 IKVKIRTVEESSFTDL 445
I +I +E F+ L
Sbjct: 393 ITFEIENIESGQFSTL 408
>gi|10955093 moaA [Agrobacterium tumefaciens] >gi|11277228|pir||T45540 moaA
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665716|gb|AAB88476.1| (AF242881) moaA
[Agrobacterium tumefaciens]
Length = 522
Score = 115 bits (284), Expect = 2e-24
Identities = 126/487 (25%), Positives = 213/487 (42%), Gaps = 64/487 (13%)
Query: 59 TRDPDTLDPQKSTWVDITT--GLVFATLINMGTNG----KIIPGLAESWEISEDGKVITF 112
+ D TLDP +T T ++ L+ I LAESWE + D V TF
Sbjct: 40 SEDVTTLDPHFATTTSDRTLVSYIYGALVRFAPGSANPSSIEADLAESWESNADQLVWTF 99
Query: 113 HLRKGIR--DALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIY 170
LR ++ GN +TA+DV F D+ +P+ + +++V+ +D TV++
Sbjct: 100 KLRPDVKWQGGYGN-VTADDVVFSLDKARDPKRSAFSGDYAA--IQKVEAVDAKTVRITL 156
Query: 171 KEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNP 230
L L+ I K+ +++ G F + P G GP+ V G + N
Sbjct: 157 TRRVPSLLALLSNFSGGFIIPKKAFKERGD-DFKRRPVGFGPFQVESIQPGQSVTLTANA 215
Query: 231 YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKD--LA 288
+ R G P + I +R + F++G + V + + A
Sbjct: 216 EYFR-----------GKPKLSKISYRFLNNEAARDLAFESGELDVEQGNQDQRWLQRLTA 264
Query: 289 NDPNV--EMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGL--AVP 344
N NV + PA +LH N K PFND RVRQA+ +N +I KY E + AVP
Sbjct: 265 NPENVVDTIEPAELNLLH---INITKPPFNDIRVRQALAHTVNAAQIAKYRGERVNRAVP 321
Query: 345 VHGPLVPSMN-GYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIV 403
++PS N G+ YDP ++K+LLAEAG+ NG +
Sbjct: 322 ---SVIPSNNLGFDPD-----AGVLNYDPAQSKKLLAEAGF-----------PNG---VT 359
Query: 404 EMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLF---RYGL 460
+++ +AQ+IQAQ+A+ G + ++ VE +++ ++ K L + L+ R+ +
Sbjct: 360 VTMVASQLPGLESLAQLIQAQVAEGGFTLNLQPVEHAAWHQMIRKDLSPIVLYGAARFPI 419
Query: 461 QDAQILLYMFHSKKGVKR-----MFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILID 515
D L +HS + + F + D+ ++ T DP ++ + +EA+K+++
Sbjct: 420 AD-YYLTQFYHSASEIGKPTQVVNFSHCNVADKQIEAARTETDPNKQIELWKEAQKLIVS 478
Query: 516 GAPMVPL 522
+PL
Sbjct: 479 NVCAIPL 485
>pir||H70140 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-2) homolog - Lyme disease spirochete
>gi|2688227|gb|AAC66707.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-2) [Borrelia burgdorferi]
>gi|2809545|gb|AAC34991.1| (AF043071) oligopeptide
permease periplasmic binding protein [Borrelia
burgdorferi]
Length = 528
Score = 115 bits (284), Expect = 2e-24
Identities = 122/504 (24%), Positives = 222/504 (43%), Gaps = 65/504 (12%)
Query: 61 DPDTLDPQ------KSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHL 114
+P +LDPQ S +D + N G N PGLA+ W+IS DG V TF+L
Sbjct: 37 EPSSLDPQLAEDNVASKMIDTMFRGIVTGDPNTGGNK---PGLAKGWDISSDGTVYTFNL 93
Query: 115 RKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VK 159
R+ I + G ITAE ++ + R++N ET S +V +K ++
Sbjct: 94 REKITWSDGVAITAEGIRKSYLRILNKETGSKYVEMVKSVIKNGQKYFDGQVTDSELGIR 153
Query: 160 VIDDYTVQLIYKEPYGPALPFLA--TMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVK 217
ID+ T+++ + P + L + P+ + E ++GQ T P +V
Sbjct: 154 AIDEKTLEITLESPKPYFIDMLVHQSFIPVPVHVTE--------KYGQN--WTSPENMV- 202
Query: 218 WVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
G + +R P K + + + +E I F + T ++ + +
Sbjct: 203 -TSGPFKLKERIPNEKYVFEKNNKYYDSNEVELEEITFYTTNDSSTAYKMYENEELDAIF 261
Query: 278 -DVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
+PP+ K+L + + +++ FN P ++ ++R+A+ +AI+RE +
Sbjct: 262 GSIPPDLIKNL--KLRSDYYSSAVNAIYFYAFNTHIKPLDNVKIRKALTLAIDRETLTYK 319
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
L+ P P+ + YS YAK ++PE AK LLAEAG+
Sbjct: 320 VLDNGTTPTR-RATPNFSSYS-----YAKSLELFNPEIAKTLLAEAGY-----------P 362
Query: 397 NGNKF-IVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKGLHQMY 454
NGN F I+++ +T E K+ + IQ Q K + I V++ E +++ + + G +++
Sbjct: 363 NGNGFPILKLKYNTNEAN-KKICEFIQNQWKKNLNIDVELENEEWTTYLNTKANGNYEIA 421
Query: 455 LFRYGLQDAQILLYMFHSKKGVKRMF---FYRKDLDEALDKMGTTVDPEERQKYIEEAEK 511
+ A L ++ +G + + + +E + K +DP +RQ + +AE+
Sbjct: 422 RAGWIGDYADPLTFLSIFTQGYTQFSSHNYSNPEYNELIKKSDLELDPIKRQDILRQAEE 481
Query: 512 ILID-GAPMVPLYARKVFLAYRKD 534
I+I+ P+ P+Y +R D
Sbjct: 482 IIIEKDFPIAPIYIYGNSYLFRND 505
>gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 541
Score = 115 bits (284), Expect = 2e-24
Identities = 129/521 (24%), Positives = 223/521 (42%), Gaps = 73/521 (14%)
Query: 62 PDTLDPQKSTWVDITTGL-----VFATLINMGTN-GKIIPGLAESWEISEDGKVITFHLR 115
P +LDP VD T G +F+ L+ + T GK+ PGLA++WE S+D K F+LR
Sbjct: 47 PSSLDPHL---VDETIGARILEQIFSGLLTLNTKTGKLKPGLAKNWEASKDKKTYQFYLR 103
Query: 116 KGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VKV 160
+ + G ITAE ++ F R++N ET S ++ +K +K
Sbjct: 104 DNLFWSDGVEITAEGIRKSFLRILNKETGSTNVDMLKSIIKNGQEYFDGKVSDSELGIKA 163
Query: 161 IDDYTVQLIYKEPYGPALPFL---ATMP-PLGIFSKEFYEKVGPVQFGQTPAGTGPYYVV 216
ID T+++ P L L A MP P+ + K P + +GP+ +
Sbjct: 164 IDSKTLEITLTAPKPYFLELLLHYAFMPVPVHVIEKYKGNWTSP----ENMVTSGPFKLK 219
Query: 217 KWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
K + I +++N +R Y N ++ + + T+ + +K I +
Sbjct: 220 KRLPNEKIIFEKN---ERYY-------NAKEVELDELVYITSDNDLTVYNMYKNNEIDAI 269
Query: 277 LD-VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
+ +PP+ ++ + ++ FN + P +D RVR+A+ +AI+RE +
Sbjct: 270 FNSIPPDIVNEIKLQK--DYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAIDRETLTY 327
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
L VP + P + Y+ Y K+ +DPEK+K+LLA+AG+
Sbjct: 328 KVLNDGTVPTR-EITPDLENYN-----YGKKLALFDPEKSKKLLADAGY----------- 370
Query: 396 KNGNKF-IVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMY 454
NG F ++ + +T E K+A IQ Q KI + + + E+ S+
Sbjct: 371 PNGKGFPMLTLKYNTNETH-KKIAAFIQNQWKKI-LNINLMLTNENWPVLTNSRNTGNFE 428
Query: 455 LFRYG----LQDAQILLYMFHSKKGVKRMFFYRK-DLDEALDKMGTTVDPEERQKYIEEA 509
+ R G D +F + + Y + D+ + + DP +R++ + +A
Sbjct: 429 IIRVGRIGEYLDPHTYFTIFTRENSQLASYGYSNLEFDKLIRESDLEKDPIKRKQLLRKA 488
Query: 510 EKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
E I+I+ P P+Y +R D G NP +VY
Sbjct: 489 ESIIIEKDFPAAPIYIYSGHYLFRNDKWTG--WNPNVSEVY 527
>gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Borrelia
burgdorferi]
Length = 541
Score = 114 bits (283), Expect = 2e-24
Identities = 129/521 (24%), Positives = 222/521 (41%), Gaps = 73/521 (14%)
Query: 62 PDTLDPQKSTWVDITTGL-----VFATLINMGTN-GKIIPGLAESWEISEDGKVITFHLR 115
P +LDP VD T G +F+ L+ + T GK+ PGLA++WE S+D K F+LR
Sbjct: 47 PSSLDPHL---VDETIGARILEQIFSGLLTLNTKTGKLKPGLAKNWEASKDKKTYQFYLR 103
Query: 116 KGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VKV 160
+ + G ITAE ++ F R++N ET S ++ +K +K
Sbjct: 104 DNLFWSDGVEITAEGIRKSFLRILNKETGSTNVDMLKSIIKNGQEYFDGKVSDSELGIKA 163
Query: 161 IDDYTVQLIYKEPYGPALPFL---ATMP-PLGIFSKEFYEKVGPVQFGQTPAGTGPYYVV 216
ID T+++ P L L A MP P+ + K P + GP+ +
Sbjct: 164 IDSKTLEITLTAPKPYFLELLLHYAFMPVPIHVIEKYKGNWTSP----ENMVTCGPFKLK 219
Query: 217 KWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
K + I +++N +R Y N ++ + + T+ + +K I +
Sbjct: 220 KRLPNEKIIFEKN---ERYY-------NAKEVELDELVYITSDNDLTVYNMYKNNEIDAI 269
Query: 277 LD-VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
+ +PP+ ++ + ++ FN + P +D RVR+A+ +AI+RE +
Sbjct: 270 FNSIPPDIVNEIKLQK--DYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAIDRETLTY 327
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
L VP + P + Y+ Y K+ +DPEK+K+LLA+AG+
Sbjct: 328 KVLNDGTVPTR-EITPDLKNYN-----YGKKLALFDPEKSKKLLADAGY----------- 370
Query: 396 KNGNKF-IVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMY 454
NG F ++ + +T E K+A IQ Q KI + + + E+ S+
Sbjct: 371 PNGKGFPMLTLKYNTNETH-KKIAAFIQNQWKKI-LNINLMLTNENWPVLTNSRNTGNFE 428
Query: 455 LFRYG----LQDAQILLYMFHSKKGVKRMFFYRK-DLDEALDKMGTTVDPEERQKYIEEA 509
+ R G D +F + + Y + D+ + + DP +R++ + +A
Sbjct: 429 IIRVGRIGEYLDPHTYFTIFTRENSQLASYGYSNLEFDKLIRESDLEKDPIKRKQLLRKA 488
Query: 510 EKILID-GAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
E I+I+ P P+Y +R D G NP +VY
Sbjct: 489 ESIIIEKDFPAAPIYIYSGHYLFRNDKWTG--WNPNVSEVY 527
>pir||A36263 polyamine-induced protein precursor - Escherichia coli
>gi|147014|gb|AAA21302.1| (J05433) oligopeptide binding
protein precursor [Escherichia coli]
Length = 543
Score = 113 bits (281), Expect = 4e-24
Identities = 122/464 (26%), Positives = 189/464 (40%), Gaps = 65/464 (14%)
Query: 13 ALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW 72
+L AA V A + G G + +T LV + +LDP K
Sbjct: 8 SLVAAGVLAALMAGNVALAADVPAGVTLAEKQT--------LVRNNGSEVQSLDPHKIEG 59
Query: 73 V-------DITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNP 125
V D+ GL+ + L +G PG+AESW+ ++D KV TFHLRK + + G P
Sbjct: 60 VPESNISRDLFEGLLVSDL-----DGHPAPGVAESWD-NKDAKVWTFHLRKDAKWSDGTP 113
Query: 126 ITAEDVKFVFDRLMNPETRSPMAPLV----LGPLKE------------VKVIDDYTVQLI 169
+TA+D + + R ++P T SP A + + + E VK IDD+T+++
Sbjct: 114 VTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVT 173
Query: 170 YKEPYGPALPFLATMPPLGIFSKEFYEKVGP--VQFGQTPAGTGPYYVVKWVRGAYIEYK 227
EP P L P K EK G Q G G Y + WV I +
Sbjct: 174 LSEPV-PYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNI-VTNGAYTLKDWVVNERIVLE 231
Query: 228 RNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD-VPPEFYK 285
R+P YW N I + + I T V+ +++G I + + +P E ++
Sbjct: 232 RSPTYW-----------NNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNSMPIELFQ 280
Query: 286 DLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPV 345
L + E+ +Y N QK PFND R A+ + ++R+ I+ +P
Sbjct: 281 KLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVLWRTALKLGMDRDIIVNKVKAQGNMPA 340
Query: 346 HGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEM 405
+G P +G E+ E+AK+LLAEAG+ DK + +
Sbjct: 341 YGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYT--------ADK---PLTINL 389
Query: 406 WISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKG 449
+T +L IG+ VK+ E +F D +G
Sbjct: 390 LYNTSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQG 433
>emb|CAC16443.1| (AL450165) putative ABC transporter solute binding lipoprotein
[Streptomyces coelicolor]
Length = 516
Score = 113 bits (281), Expect = 4e-24
Identities = 124/535 (23%), Positives = 224/535 (41%), Gaps = 70/535 (13%)
Query: 2 RQKIVKT--LLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYT 59
R+++++T LL+ AL+A + + C GT+ A VL + T
Sbjct: 8 RRRVLRTGGLLLGALSAPALLSAC---------------GTTAAADRAG---NVLRVSQT 49
Query: 60 RDPDTLDPQKSTWVDITTGLV--FATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKG 117
DP TLDPQK + L+ F TL G + ++ P LA SW+ + D + F LR G
Sbjct: 50 GDPKTLDPQKQGDMVSMNVLINMFDTLTTRGRDNRLHPRLALSWKAT-DARTWRFVLRPG 108
Query: 118 IRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPA 177
+ G A V F +RL++P T+SP+ L +K V V+D TV I+ + P
Sbjct: 109 VTFHNGEVCDARAVAFSIERLLDPATKSPIVELRF--VKGVTVVDRLTVD-IHTTVHDPI 165
Query: 178 LPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKR-NPYWKREY 236
LP ++ + VG F P GTGP+ W R + + + +W
Sbjct: 166 LPAKLSLFGGVVVPPRHLADVGDAAFADHPVGTGPFTFTSWQRDHELRMRAYDGHWN--- 222
Query: 237 RPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMI 296
G P ++ + F + ++ ++G + ++ + P+ + L + +
Sbjct: 223 ---------GRPAVDGLVFSPAPNASSSLAALQSGGVDLVAGLTPDAAQQLDGYGGITIH 273
Query: 297 PALEYVLHYIGFN-CQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNG 355
Y+ N + P D RVRQA+N AI+ +IK L G A + G
Sbjct: 274 GYTGIRTAYLSLNTLENGPLQDRRVRQALNHAIDVPLLIKAVLGGKATETPALVPRGSFG 333
Query: 356 YSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAP 415
+ ++ + + + A++LLAEAG + + F + S +
Sbjct: 334 FDPTVKPFTR-----SVDTARRLLAEAG-------------HPHGFSTTLTASNVD---A 372
Query: 416 KVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSK----GLHQMYLFR---YGLQDAQILLY 468
VA+ + LA+ G+ ++ ++ +++ ++ L +YL + + A I+
Sbjct: 373 NVAEALSGLLARAGVDARVNLLDPGTYSARLTSDNRGALGPIYLAASTVWTMDGASIVQS 432
Query: 469 MFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
S + R ++ + D +D + DP R+ + ++++ AP V LY
Sbjct: 433 NVRSDRRQSR--WHSAEADRLIDAEELSEDPRRREAAFSDLQRLMRREAPFVFLY 485
>dbj|BAB05793.1| (AP001514) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 486
Score = 112 bits (278), Expect = 9e-24
Identities = 116/466 (24%), Positives = 198/466 (41%), Gaps = 47/466 (10%)
Query: 78 GLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDR 137
G+V+ +L+ G I P LAESWEIS+DGKV TFHLR+ + G P A+ VK +
Sbjct: 14 GMVYESLVENTEEG-IQPLLAESWEISDDGKVYTFHLREDVEFHDGEPFNADAVKKNIEA 72
Query: 138 LM-NPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYE 196
+ N + S + + + E VID+YTV+L+ E Y P L L+ P S +
Sbjct: 73 VQRNVDLHSWIK--LSQKIVECNVIDEYTVELVLSEAYYPTLVELSMTRPYVFLSPNDFT 130
Query: 197 KVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRF 255
GTGPY + + V+ Y ++ N YW G P I+ I
Sbjct: 131 NEETKDGVNGYHGTGPYILTEHVKDNYATFEANENYW------------GGEPSIKKITA 178
Query: 256 RIIKEPFTLVSEFKAGNIHVLL-------DVPPEFYKDLANDPNVEMIPALEYVLHYIGF 308
+++ T + G ++ + + E L + +++ + I
Sbjct: 179 KVLPAGETTFLALQKGEVNFIFTDDRGTDSIDVEAMNQLIDTGEYQLVRSEAMNTKIIAA 238
Query: 309 NCQ--KYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQ 366
N + P ++T VR+AI I+RE I L G + ++ ++ +
Sbjct: 239 NSSNAESPVSETAVREAIWHTIDRETIANDILAGTET-----VADTLFSHNIHYANVELK 293
Query: 367 KYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLA 426
YD E A+ +L +AGW + + K+G + ++ + A+ IQA L
Sbjct: 294 DRGYDIETAEAILEQAGWT-LENERNARTKDGIPLAMNLYYDSNSSSQKTQAEFIQASLR 352
Query: 427 KIGIKVKIRTVEESSFTDLVSKGLHQMYLFR--YGL-QDAQILLYMF-------HSKKGV 476
+IGI+++I E +S + + G + + LF +GL D Q + F H+ G+
Sbjct: 353 EIGIQLEIIGEESTSIANRRATGDYDL-LFNQTWGLAYDPQSTIAAFTSESSYLHTTSGI 411
Query: 477 KRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPL 522
K ++E + + D + R + I+ D A +P+
Sbjct: 412 NNADELYKKIEEVM----ISTDEDTRASLYADILTIVHDEAVFIPI 453
>gb|AAC46283.1| (AF000366) oligopeptide permease homolog AII [Borrelia burgdorferi]
Length = 528
Score = 112 bits (277), Expect = 1e-23
Identities = 121/504 (24%), Positives = 221/504 (43%), Gaps = 65/504 (12%)
Query: 61 DPDTLDPQ------KSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHL 114
+P +LDPQ S +D + N G N PGLA+ W+IS DG V TF+L
Sbjct: 37 EPSSLDPQLAEDNVASKMIDTMFRGIVTGDPNTGGNK---PGLAKGWDISSDGTVYTFNL 93
Query: 115 RKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VK 159
R+ I + G ITAE ++ + R++N ET S +V +K ++
Sbjct: 94 REKITWSDGVAITAEGIRKSYLRILNKETGSKYVEMVKSVIKNGQKYFDGQVTDSELGIR 153
Query: 160 VIDDYTVQLIYKEPYGPALPFLA--TMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVK 217
ID+ T+++ + P + L + P+ + E ++GQ T P +V
Sbjct: 154 AIDEKTLEITLESPKPYFIDMLVHQSFIPVPVHVTE--------KYGQN--WTSPENMV- 202
Query: 218 WVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
G + +R P K + + + +E I F + T ++ + +
Sbjct: 203 -TSGPFKLKERIPNEKYVFEKNNKYYDSNEVELEEITFYTTNDSSTAYKMYENEELDAIF 261
Query: 278 -DVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
+PP+ K+L + + +++ FN P ++ ++R+A+ +AI+RE +
Sbjct: 262 GSIPPDLIKNL--KLRSDYYSSAVNAIYFYAFNTHIKPLDNVKIRKALTLAIDRETLTYK 319
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
L+ P P+ + YS YAK ++PE AK LLAEAG+
Sbjct: 320 VLDNGTTPTR-RATPNFSSYS-----YAKSLELFNPEIAKALLAEAGY-----------P 362
Query: 397 NGNKF-IVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKGLHQMY 454
NGN F I+++ +T K+ + IQ Q K + I V++ E +++ + + G +++
Sbjct: 363 NGNGFPILKLKYNTNGAN-KKICEFIQNQWKKNLNIDVELENEEWTTYLNTKANGNYEIA 421
Query: 455 LFRYGLQDAQILLYMFHSKKGVKRMF---FYRKDLDEALDKMGTTVDPEERQKYIEEAEK 511
+ A L ++ +G + + + +E + K +DP +RQ + +AE+
Sbjct: 422 RAGWIGDYADPLTFLSIFTQGYTQFSSHNYSNPEYNELIKKSDLELDPIKRQDILRQAEE 481
Query: 512 ILID-GAPMVPLYARKVFLAYRKD 534
I+I+ P+ P+Y +R D
Sbjct: 482 IIIEKDFPIAPIYIYGNSYLFRND 505
>gi|11499356 dipeptide ABC transporter, dipeptide-binding protein (dppA)
[Archaeoglobus fulgidus] >gi|7483283|pir||F69470
dipeptide ABC transporter, dipeptide-binding protein
(dppA) homolog - Archaeoglobus fulgidus
>gi|2648784|gb|AAB89484.1| (AE000981) dipeptide ABC
transporter, dipeptide-binding protein (dppA)
[Archaeoglobus fulgidus]
Length = 520
Score = 111 bits (276), Expect = 2e-23
Identities = 97/340 (28%), Positives = 156/340 (45%), Gaps = 30/340 (8%)
Query: 54 LVIGYTRDPDTLDPQKS----TWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKV 109
+ IG T LDP + TW + + GT ++ P LAESWE+SEDG V
Sbjct: 200 ITIGVTDKITDLDPANAYDFYTWEIMNNVMGGLVRYKPGTT-ELEPYLAESWEVSEDGLV 258
Query: 110 ITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLI 169
TFHLR+ ++ A G P A+DV R+M + + LV +++V+ +DDYTV+
Sbjct: 259 YTFHLRQDLKFADGTPCKAQDVVRSIKRVMT--IQGDPSWLVTHFVEDVEAVDDYTVKFT 316
Query: 170 YKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRN 229
K+P + LAT P + +++ P QT G GPY +V+W R + + N
Sbjct: 317 LKKPAAYFVSLLATPPYFPVHPAYKADEIDP---DQTAGGVGPYKIVEWKRDQELILEAN 373
Query: 230 PYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL-LDVPPEFYKDLA 288
P + E P + I + K+ TL + G + + + P + L
Sbjct: 374 PNFFGE-----------QPMTKRIVVKFYKDATTLRLAIEKGEVDIAWRTLTPIDIESLK 422
Query: 289 NDPNVEMIPALEYVLHYIGFNCQK---YPFNDTRVRQAINMAINREEIIKYALEGLAVPV 345
+++I A + Y+ N + YP + VR+AI AI+RE+I + G P+
Sbjct: 423 AKEGLQVIEAPGGFIRYLVLNANENTDYPTKNIYVRKAIAAAIDREDIAQRVYRGTVEPL 482
Query: 346 HGPLVPSMNGYSEKMEEYAKQKY-PYDPEKAKQLLAEAGW 384
+ + M + E+ K Y + E AK+ L +AG+
Sbjct: 483 YSLIPIGMWSH----EDVFKDMYGDGNIELAKEYLKKAGY 518
>emb|CAA10909.1| (AJ222649) sapA [Erwinia chrysanthemi]
Length = 540
Score = 111 bits (274), Expect = 3e-23
Identities = 124/518 (23%), Positives = 221/518 (41%), Gaps = 72/518 (13%)
Query: 64 TLDPQKST---WVDITTGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITFHLRKGI- 118
T +PQ S VD ++ L+ + +++P LA+ W++S++G F LR+ +
Sbjct: 48 TFNPQMSRSGLMVDTLAAQLYDRLLGVDPYTYRLMPELAQ-WDVSDNGSTYRFTLRRDVP 106
Query: 119 --RDALGNPITA----EDVKFVFDRLMNPETRSPMAPLVLGP------------LKEVKV 160
+ A P +DV F F R++ + + P + G ++ ++
Sbjct: 107 FQQTAWFTPSRMLNADDDVLFSFQRML--DKKHPFHNINGGEYPYFDSLQLADNVQSIRK 164
Query: 161 IDDYTVQLIYKEPYGPALPFLAT--MPPLGI-FSKEFYEKVGPVQFGQTPAGTGPYYVVK 217
+ DY++++ ++P L LAT P L ++++ + G + P GTGPY + +
Sbjct: 165 LGDYSIEIPSEQPDASFLWHLATHYAPILSAEYAQQLTRQDGRELLDRQPVGTGPYRLEQ 224
Query: 218 WVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
+ G ++ KRN YW+ G P +E + + +S+ G VL
Sbjct: 225 YRYGQFVRLKRNNNYWR------------GRPLMEQVVVDLGSGGTGRLSKLLTGECDVL 272
Query: 277 LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKY 336
L NDP + + + Y+ FN +K P +D RVR A+ +AIN + +++
Sbjct: 273 AYPAASQLSILRNDPRLRLSLRPGMNVAYLAFNVRKPPLDDARVRHAVALAINNDRLMQS 332
Query: 337 ALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDK 396
G A L + Y + Q Y+PEKA+QLL E G
Sbjct: 333 IYYGTAETAASILPRASWAYDNE-----AQVTEYNPEKARQLLKELGITHLQ-------- 379
Query: 397 NGNKFIVEMWI-STGELEAP---KVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQ 452
+++W+ S + P K A++IQA LA++GI+V I VE + + H
Sbjct: 380 ------LQLWVPSASQSYNPSPVKTAELIQADLAQVGIQVTIVPVEGRFQEARLMEMNHD 433
Query: 453 MYLFRYGL--QDAQILLYMFHSKKGVKRMFFYR----KDLDEALDKMGTTVDPEERQKYI 506
+ L + D + S ++ Y D+ L ++ R +Y
Sbjct: 434 LTLAGWATDSNDPDSVFRPLLSCAAIRSQTNYAHWCDPGFDQVLQDALSSQQLSRRMEYY 493
Query: 507 EEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPY 544
A IL + P++PL + AYR D ++G+V++P+
Sbjct: 494 RVAHHILAEQLPVLPLASSLRMQAYRYD-IKGLVLSPF 530
>pir||E72059 peptide ABC transporter, periplasmic peptide-binding protein,
probable CP0149 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376894|gb|AAD18738.1|
(AE001644) Oligopeptide Binding Lipoprotein
[Chlamydophila pneumoniae CWL029]
>gi|7189085|gb|AAF38031.1| (AE002176) peptide ABC
transporter, periplasmic peptide-binding protein,
putative [Chlamydophila pneumoniae AR39]
>gi|8978971|dbj|BAA98806.1| (AP002547) oligopeptide
binding lipoprotein [Chlamydophila pneumoniae J138]
Length = 707
Score = 109 bits (270), Expect = 8e-23
Identities = 120/488 (24%), Positives = 208/488 (42%), Gaps = 84/488 (17%)
Query: 124 NPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEV---------KVIDDYTVQLIYKEP- 173
+P+TA D+KF +D +MNP + A + ++V K++ + + E
Sbjct: 214 HPVTAHDIKFFYDAVMNPYVATMRAVALRSCYEDVVSVSVENDLKLVVRWKAHTVINEEG 273
Query: 174 ------YGPALPFLATMPPLGIFSKEFY---EKV---GPVQFGQTPAGTGPYYVVKWVR- 220
A ++ PL F +++ EK+ + +T + + + W
Sbjct: 274 KEERKVLYSAFSNTLSLQPLPRFVYQYFANGEKIIEDENIDTYRTNSIWAQNFTMHWANN 333
Query: 221 -----GAY---------IEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPF-TLV 265
GAY I + RNP + Y P AL + RF KE +L
Sbjct: 334 YIVSCGAYYFAGMDDEKIVFSRNPDF---YDPLAALIDK--------RFVYFKESTDSLF 382
Query: 266 SEFKAGNIHVLLDVPPE----FY---------KDLANDPNVEMIPALEYVLHYIGFNCQK 312
+FK G I + +PP FY K +A V + + YIG+NC
Sbjct: 383 QDFKTGKIDISY-LPPNQRDNFYSFMKSSAYNKQVAKGGAVRETVSADRAYTYIGWNCFS 441
Query: 313 YPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDP 372
F +VR A+NMAI+RE II+ L+G + GP S Y++++E + Y P
Sbjct: 442 LFFQSRQVRCAMNMAIDRERIIEQCLDGQGYTISGPFASSSPSYNKQIE-----GWHYSP 496
Query: 373 EKAKQLLAEAGWVDRDGDGILE---DKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIG 429
E+A +LL E GW+D DGDGI E D F + + A +A + +IG
Sbjct: 497 EEAARLLEEEGWIDTDGDGIREKVIDGVIVPFRFRLCYYVKSVTAHTIADYVATACKEIG 556
Query: 430 IKVKIRTVEESSFTDLVSKGLHQMYLFRYGL----QDAQILLYMFHSKKGVKR-----MF 480
I+ + ++ + + + L + L +D + L +HS+ +++ +
Sbjct: 557 IECSLLGLDMADLSQAFDEKNFDALLMGWCLGIPPEDPRAL---WHSEGAMEKGSANVVG 613
Query: 481 FYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIV 540
F+ ++ D+ +D++ D +ER + +I+ + AP L++R L Y KD V+ I
Sbjct: 614 FHNEEADKIIDRLSYEYDLKERNRLYHRFHEIIHEEAPYAFLFSRHCSLLY-KDYVKNIF 672
Query: 541 INPYTLDV 548
+ + D+
Sbjct: 673 VPTHRTDL 680
>pir||S77182 oligopeptide transport system permease protein appA - Synechocystis
sp. (strain PCC 6803) >gi|1652821|dbj|BAA17740.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 631
Score = 109 bits (269), Expect = 1e-22
Identities = 116/441 (26%), Positives = 183/441 (41%), Gaps = 64/441 (14%)
Query: 54 LVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITF 112
+V DP T + S G ++ LI G+ P LAESWEIS D ITF
Sbjct: 67 VVFSVLSDPKTFNAVLSQESPNVFGYIYEGLIRENPLTGERTPALAESWEISPDNLTITF 126
Query: 113 HLRKGIRDALGNPITAEDVKFVF-DRLMNPE-TRSPMAPLVLGPLK---EVKVIDDYTVQ 167
L++G+R + G P+T +DV F + D +NP+ + L +G + ++ + D V
Sbjct: 127 TLKEGLRWSDGKPLTVDDVLFSYNDLYLNPKIPNNYRDSLKVGESQAEPKITKVGDRQVA 186
Query: 168 LIYKEPYGPALPFLATMPPL-GIFSKEFYEKV----GPVQFGQTPAGT--------GPYY 214
EP+ P L A P L +E EK P+ T GPY
Sbjct: 187 FNIPEPFAPFLE-TAQFPILPAHILRETVEKTDENGNPLFLSTWGTNTPPDQIVVNGPYK 245
Query: 215 VVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIH 274
+ ++V + + +NPY+ + +L PYI + + I++ T + +F++G++
Sbjct: 246 LTRYVTSQRVIFSKNPYYWEKGPNGESL-----PYIPRVVWAIVESTDTSLLQFRSGSLD 300
Query: 275 VLLDVPPEFYKDLANDPN----VEMIPALEYVLHYIGFNCQKYP--------------FN 316
L VPPE + L + V Y Y+ FN + FN
Sbjct: 301 -SLGVPPESFSLLKQEEERGNFVIYNGGPTYASSYLTFNLNQGKRQGKPLVDPIKSRWFN 359
Query: 317 DTRVRQAINMAINREEIIKYALEGLA------VPVHGPLV-PSMNGYSEKMEEYAKQKYP 369
+ RQAI I+RE ++ GL +PV P P + Y+
Sbjct: 360 NLNFRQAIAYGIDRERMVNNIYRGLGEKQNSFIPVQSPFFNPDVKVYN------------ 407
Query: 370 YDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIG 429
YDPEKA+ LL G+ + +L+D+ GN+ + + G + IQ L K+G
Sbjct: 408 YDPEKAQALLKAGGFTYNNQRQLLDDR-GNRVRFVLNTNAGNKVREAMGTQIQEDLGKLG 466
Query: 430 IKVKIRTVEESSFTDLVSKGL 450
I+V + D +S L
Sbjct: 467 IQVDFSPISFGVLVDKLSNSL 487
>gb|AAC18096.1| (AF058302) FrnA [Streptomyces roseofulvus]
Length = 770
Score = 107 bits (265), Expect = 3e-22
Identities = 111/495 (22%), Positives = 204/495 (40%), Gaps = 45/495 (9%)
Query: 40 TSPTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAE 99
T P A K K V+ D D +D+ LV + +GK +P LA
Sbjct: 276 TLPVVDNPAEKVKATVVLNETDADPQQSALGQSLDVGRQLVDSLTDQDPRDGKTVPWLAT 335
Query: 100 SWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVK 159
W+ + TF LR G + G P+ A VK FD + + + L +E +
Sbjct: 336 RWKADPEATRFTFTLRAGATFSDGTPVDARAVKANFDAVHELGAAASRGAVYLDGYRETR 395
Query: 160 VIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWV 219
V T+ +++ +P L +T+ LG+ S + + G+GP+ + ++
Sbjct: 396 VSGARTLTVVFDKPNAQFLRGTSTV-SLGLLSPGSLRRTPQERCTGRLVGSGPFVLDRYR 454
Query: 220 RGAYIEYKR-------NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGN 272
+ R + W+RE G Y+E + +RI+ E T AG
Sbjct: 455 PNTSVTLDRRKGYSWGSRLWQRE----------GGAYLEGVEYRIVPENTTRSGALSAGQ 504
Query: 273 IHVLLDVPPEFYKDLANDPNVEMI----PALEYVLHYIGFNCQKYPFNDTRVRQAINMAI 328
+ V + P+ ++ + P ++ P ++ L+ N ++ + VRQA+ I
Sbjct: 505 LDVATALAPQ-DRERFSAPGWSLLTRTAPGVDLSLY---VNARRTALREAAVRQALQKGI 560
Query: 329 NREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRD 388
+RE + L + L + GY++ + A +DP A++LL +AGW R
Sbjct: 561 DREAVATTFLSSRKLAATSVLSSTTPGYTDLGDRLA-----HDPAGARRLLDKAGW--RP 613
Query: 389 GDGILEDKNGNKFIVE-MWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVS 447
G + KNG + ++ +++ LE ++Q QL IG+++++R + S F ++++
Sbjct: 614 GADGIRVKNGVRLRLDAVFVRQQSLE------LVQQQLKDIGVELRLRQLTVSRFPEVLA 667
Query: 448 KGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIE 507
G + + L D +L F V L L + ++ D R
Sbjct: 668 AGSYDLSLQSANRADPDVLTTAFAGGTPVA-----DARLRSELRRATSSTDEATRSSLFA 722
Query: 508 EAEKILIDGAPMVPL 522
A++ L+D ++PL
Sbjct: 723 AAQRRLVDEGHVLPL 737
>pir||B82170 peptide ABC transporter, periplasmic peptide-binding protein VC1680
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9656196|gb|AAF94830.1| (AE004246) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 540
Score = 107 bits (264), Expect = 4e-22
Identities = 125/522 (23%), Positives = 214/522 (40%), Gaps = 65/522 (12%)
Query: 62 PDTLDPQKSTWVDITTGL----VFATLINMGTNGKI-IPGLAESWEISEDGKVITFHLRK 116
P T +PQ + DIT+ ++ TL+ + + + LA SW ++ G F LR
Sbjct: 42 PTTFNPQLAD-NDITSDALGPQIYNTLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRP 100
Query: 117 GIRDALG------NPITAEDVKFVFDRLMNP--------ETRSPMAPLV--LGPLKEVKV 160
+ P+ A+DV F F R+++P +T+ P + L +V
Sbjct: 101 DVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSA 160
Query: 161 IDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKV----GPVQFGQTPAGTGPYYVV 216
+DD TV+ + P L +AT + I S E+ ++ + P GTGP+Y+
Sbjct: 161 LDDLTVKFVLSRPDNSFLSNIATSHAV-ILSLEYANQLIIDDEKEKLDNLPLGTGPFYLA 219
Query: 217 KWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHV 275
++ I KR+P YW+ G +E + F I + ++++ V
Sbjct: 220 EYHPRDLIRLKRHPQYWE------------GAAKVEQVVFDISQRGTGMLAKLLRNECDV 267
Query: 276 LLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
L + +P++ + + +I N Q ND RVR+A+N AINR+ I+
Sbjct: 268 LNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNILD 327
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
G L P+ Y + + YD A+ LL EAG+
Sbjct: 328 SVYYGTGSIAFTILPPTSWAYQQDTAQIR-----YDRNYAQALLREAGFA---------- 372
Query: 396 KNGNKFIVEMWISTGELEAP--KVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQM 453
G + + + + K A++IQA LA IG+ +++ + + S +L + +
Sbjct: 373 -TGLELTMSVPVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDL 431
Query: 454 YLFRY----GLQD--AQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIE 507
YL + G D + LL ++ G+ + D D LD P R
Sbjct: 432 YLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYH 491
Query: 508 EAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINPYTLDVY 549
+A+ IL P++PL F AY K + GI I+P+ + +
Sbjct: 492 QAQNILNQEFPVIPLAHGIQFTAYSKSLT-GIRISPFNVQPF 532
>sp|P36634|SAPA_SALTY PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|628817|pir||S39585 peptide transport periplasmic
protein sapA precursor - Salmonella typhimurium
>gi|414208|emb|CAA52284.1| (X74212) sapA [Salmonella
typhimurium]
Length = 549
Score = 105 bits (260), Expect = 1e-21
Identities = 128/571 (22%), Positives = 235/571 (40%), Gaps = 85/571 (14%)
Query: 14 LAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAA-LKHKVLVIGYTRDPDTLDPQKSTW 72
L++ +V AG + +Q T+P +T +A ++ V + +T +PQK++
Sbjct: 5 LSSLIVIAGLLS--------SQATAATAPEQTASADIRDSGFVYCVSGQVNTFNPQKASS 56
Query: 73 ---VDITTGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITFHLRKGI---RDALGNP 125
VD ++ L+++ +++P LAESWE+ ++G FHLR+ + + A P
Sbjct: 57 GLIVDTLAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYRFHLRRDVSFQKTAWFTP 116
Query: 126 ---ITAEDVKFVFDRLMNPETRSPMAPL------------VLGPLKEVKVIDDYTVQLIY 170
+ A+DV F F R+ + R P + +K V+ +D+ TV+
Sbjct: 117 TRKLNADDVVFTFQRIF--DRRHPWHNINGSSFPYFDSLQFADNVKSVRNVDNNTVEFRL 174
Query: 171 KEPYGPALPFLATMPPLGIFSKEFYEKVGPVQ----FGQTPAGTGPYYVVKWVRGAYIEY 226
+P L LAT + S E+ ++ + P GTGP+ + ++ G +I
Sbjct: 175 TQPDASFLWHLAT-HYASVMSAEYAAQLSRKDRQELLDRQPVGTGPFQLSEYRAGQFIRL 233
Query: 227 KRNP-YWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYK 285
+R+ +W+ G P + + + +S+ G VL
Sbjct: 234 QRHDGFWR------------GKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLT 281
Query: 286 DLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPV 345
L +DP + + + Y+ FN K P N+ VR A+ ++IN + +++ G A
Sbjct: 282 ILRDDPRLRLTLRPGMNIAYLAFNTDKPPLNNPAVRHALALSINNQRLMQSIYYGTAETA 341
Query: 346 HGPLVPSMNGYSE--KMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIV 403
L + Y K+ E Y+P+K+++ L G +
Sbjct: 342 ASILPRASWAYDNDAKITE-------YNPQKSREQLKALGI--------------ENLTL 380
Query: 404 EMWISTGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYG 459
+W+ T K A++IQA +A++G+KV I VE + H + L +
Sbjct: 381 HLWVPTSSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMNHDLTLSGWA 440
Query: 460 LQD------AQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKIL 513
+ LL + + D L K ++ R + EEA+ IL
Sbjct: 441 TDSNDPDSFFRPLLSCAAINSQTNFAHWCNPEFDSVLRKALSSQQLASRIEAYEEAQNIL 500
Query: 514 IDGAPMVPLYARKVFLAYRKDVVEGIVINPY 544
P++PL + AYR D ++G+V++P+
Sbjct: 501 EKELPILPLASSLRLQAYRYD-IKGLVLSPF 530
>gi|10956456 pXO2-66 [Bacillus anthracis] >gi|6470217|gb|AAF13671.1|AF188935_69
(AF188935) pXO2-66 [Bacillus anthracis]
Length = 519
Score = 105 bits (260), Expect = 1e-21
Identities = 114/492 (23%), Positives = 221/492 (44%), Gaps = 57/492 (11%)
Query: 80 VFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLM 139
VF L +G K IP +A+S+++SED K+ TFHLR + + G P+TAED F + R +
Sbjct: 45 VFEGLYTLGEGNKPIPAVAKSYDVSEDKKIYTFHLRDS-KWSNGTPVTAEDFVFSWKRAV 103
Query: 140 NPETRSPMAPLVLG------------PLKE--VKVIDDYT--VQLIYKEPYGPALPFLAT 183
NP+T + A L P+ + +K IDD T VQL PY L AT
Sbjct: 104 NPDTAAEYAFLFFDIKNAKKINSKELPVDQLGIKAIDDKTLEVQLEQPVPYFIDLTTFAT 163
Query: 184 MPPLGIFSKEFYEKVGPVQFG---QTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPD 239
P+ +++++E G Q+G G + + W + K+NP YW +
Sbjct: 164 FLPI---NEKYFESKGK-QYGLEADQLVYNGAFTLDNWKHEQSFQLKKNPNYWDAK---- 215
Query: 240 PALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPAL 299
+E I F I+K+ T ++ +++G + + + EF +P+ +
Sbjct: 216 -------TVKLEEINFDIVKDKSTEINLYESGQLD-RVGLTGEFVDKYRKNPDFK--ERS 265
Query: 300 EYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEK 359
E + ++ N + + R AI+ A+N++ + L ++P G +P+
Sbjct: 266 EVTVQFLRMNQKNEVLKNKNARLAISQAMNKKAFVDTVLNNGSLPADG-FIPADFAKISD 324
Query: 360 MEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQ 419
+++ K+ + K A+ W + + + G + + +++ + A K A+
Sbjct: 325 GKDFRKENGALVKDDVK--AAKEHWKN------AKQELGKEQVTLELLTSDNVFAKKNAE 376
Query: 420 IIQAQLAK--IGIKVKIRTVEESSFTDLVSKGLHQMYLFRYG--LQDAQILLYMFHSKKG 475
++ +L K G+ V ++ L+ +++ + +G + D L +F +
Sbjct: 377 YLKGELEKNLEGLTVNVKPQPRKQQIQLLLNSDYELGVDVWGPDIPDPITFLDLFTTDST 436
Query: 476 VKRMFFYRKDLDEALDKMGTTV--DPEERQKYIEEAEKILIDGAPMVPLYAR-KVFLAYR 532
+ K DE + ++ T + D R + +++AEKIL++ + P Y + + +L +
Sbjct: 437 YNFDKYSNKQYDELIHQVKTNLAGDENARWEAMKQAEKILLEDGAVAPFYQQGRSYL--Q 494
Query: 533 KDVVEGIVINPY 544
+ V+GIV N +
Sbjct: 495 RSSVKGIVTNDF 506
>pir||H82301 peptide ABC transporter, periplasmic peptide-binding protein VC0620
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9655053|gb|AAF93786.1| (AE004147) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 556
Score = 105 bits (260), Expect = 1e-21
Identities = 116/484 (23%), Positives = 202/484 (40%), Gaps = 47/484 (9%)
Query: 66 DPQKSTWVDITTGLVFATLI--NMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALG 123
+P +T + TT ++ L+ N + LAES+++++D +TF +RKG++ + G
Sbjct: 46 NPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDG 105
Query: 124 NPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLAT 183
TA+DV + F L + + V+ +D+Y V+ E +P+ +
Sbjct: 106 EAFTADDVVYSFGLLKAKPELDQRG--INKWVTSVEKVDEYKVRFRLSEA-NSNVPYEIS 162
Query: 184 MPPLGIFSKEFYEKVGPVQF-GQTPAGTGPYYVVK-WVRGAYIEYKRNPYWKREYRPDPA 241
+ P+ + + + P F + P GTGP+ V+ + YI+ + YW
Sbjct: 163 LIPI-VAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDC 221
Query: 242 LKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEM-IPALE 300
L+ P + + +I+ S F VP A +PN PA
Sbjct: 222 LRVPQIANNDQLLGKIVNSELDWTSSF----------VPDIDRTYAAANPNHHYWYPAAG 271
Query: 301 YVLHYIGFN----CQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGY 356
+ F +K ++ R+A +MA++R+ II A G G + +G
Sbjct: 272 TQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYG-----SGTVNDFASGL 326
Query: 357 SEKMEEYAKQ----KYP----YDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIS 408
E ++ + KY YD E +K+LLA+AG+ D +GDG +E +G F + +
Sbjct: 327 GYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSP 386
Query: 409 TGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILLY 468
G + Q+ QL ++GIK K RT E + + + +G + + Y A Y
Sbjct: 387 NGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNY-FHGADPFTY 445
Query: 469 -------MFHSKKGVKRM---FFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAP 518
S G+ R +F K LD LD T D E+ +KI+ +
Sbjct: 446 WNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQV 505
Query: 519 MVPL 522
+P+
Sbjct: 506 TIPV 509
>pir||D64882 periplasmic oligopeptide-binding protein precursor - Escherichia
coli >gi|1742186|dbj|BAA14922.1| (D90771) Periplasmic
oligopeptide-binding protein precursor. [Escherichia
coli] >gi|1742197|dbj|BAA14932.1| (D90772) Periplasmic
oligopeptide-binding protein precursor. [Escherichia
coli] >gi|1787590|gb|AAC74411.1| (AE000231) putative
transport periplasmic protein [Escherichia coli K12]
Length = 544
Score = 104 bits (257), Expect = 3e-21
Identities = 118/511 (23%), Positives = 205/511 (40%), Gaps = 62/511 (12%)
Query: 42 PTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGL--VFATLINMGTNGKIIPGLAE 99
P+ T A K + LV +P +LDP K+ + + +F L+N G+I+PG+A
Sbjct: 33 PSGTVLAEKQE-LVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVAT 91
Query: 100 SWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMA----------- 148
W+ S D ++ TF LR + A G P+TA+D + + RL++P+T SP A
Sbjct: 92 QWK-SNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNA 150
Query: 149 ---------PLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVG 199
P LG V +D +T+++ +P LP+ + F
Sbjct: 151 QAIIDGKATPDQLG----VTAVDAHTLKIQLDKP----LPWFVNLTANFAFF-------- 194
Query: 200 PVQFGQTPAG---TGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFR 256
PVQ +G T P ++ GAY+ +R K P+ + ++ + F
Sbjct: 195 PVQKANVESGKEWTKPGNLIG--NGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFL 252
Query: 257 IIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFN 316
I + + AG+I + P Y+ L D ++ + +Y FN QK P
Sbjct: 253 PINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTA 312
Query: 317 DTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAK 376
D RVR A++M I+R + + L P G++ + + + +AK
Sbjct: 313 DQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAK 372
Query: 377 QLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRT 436
LL+ AG+ + + + +T E + +G+ VK++
Sbjct: 373 TLLSAAGYGPQ-----------KPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQN 421
Query: 437 VEESSFTDLVSKG----LHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDK 492
E ++ D + G + ++ Y + L + R F D+ L +
Sbjct: 422 QEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISR--FNNPAYDKVLAQ 479
Query: 493 MGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
T + R AEKIL++ AP+ P+Y
Sbjct: 480 ASTENTVKARNADYNAAEKILMEQAPIAPIY 510
>sp|P77348|MPPA_ECOLI PERIPLASMIC MUREIN PEPTIDE-BINDING PROTEIN PRECURSOR
>gi|2935635|gb|AAC38216.1| (U88242) periplasmic murein
peptide binding protein precursor [Escherichia coli]
Length = 537
Score = 104 bits (257), Expect = 3e-21
Identities = 118/511 (23%), Positives = 205/511 (40%), Gaps = 62/511 (12%)
Query: 42 PTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGL--VFATLINMGTNGKIIPGLAE 99
P+ T A K + LV +P +LDP K+ + + +F L+N G+I+PG+A
Sbjct: 26 PSGTVLAEKQE-LVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVAT 84
Query: 100 SWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMA----------- 148
W+ S D ++ TF LR + A G P+TA+D + + RL++P+T SP A
Sbjct: 85 QWK-SNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNA 143
Query: 149 ---------PLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVG 199
P LG V +D +T+++ +P LP+ + F
Sbjct: 144 QAIIDGKATPDQLG----VTAVDAHTLKIQLDKP----LPWFVNLTANFAFF-------- 187
Query: 200 PVQFGQTPAG---TGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFR 256
PVQ +G T P ++ GAY+ +R K P+ + ++ + F
Sbjct: 188 PVQKANVESGKEWTKPGNLIG--NGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFL 245
Query: 257 IIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFN 316
I + + AG+I + P Y+ L D ++ + +Y FN QK P
Sbjct: 246 PINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTA 305
Query: 317 DTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAK 376
D RVR A++M I+R + + L P G++ + + + +AK
Sbjct: 306 DQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAK 365
Query: 377 QLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRT 436
LL+ AG+ + + + +T E + +G+ VK++
Sbjct: 366 TLLSAAGYGPQ-----------KPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQN 414
Query: 437 VEESSFTDLVSKG----LHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDK 492
E ++ D + G + ++ Y + L + R F D+ L +
Sbjct: 415 QEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISR--FNNPAYDKVLAQ 472
Query: 493 MGTTVDPEERQKYIEEAEKILIDGAPMVPLY 523
T + R AEKIL++ AP+ P+Y
Sbjct: 473 ASTENTVKARNADYNAAEKILMEQAPIAPIY 503
>pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii
>gi|3256907|dbj|BAA29590.1| (AP000002) 641aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 641
Score = 104 bits (257), Expect = 3e-21
Identities = 134/512 (26%), Positives = 219/512 (42%), Gaps = 55/512 (10%)
Query: 50 KHKVLVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMG-TNGKIIPGLAESWEISEDGK 108
+ + L + P +P + + + GLVF L + +++P LA+ + D
Sbjct: 34 REETLYTANSSPPTNANPLQGSNIIPIAGLVFEPLFMLNFMKTELVPWLADYGKWVSDN- 92
Query: 109 VITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQL 168
V LR+G R G P+TA DVKF F+ ++ + LKE+KV+DD TVQ
Sbjct: 93 VFEVKLREGTRWQDGKPLTANDVKFSFEYY----EKAGLKDWSRYGLKEIKVVDDRTVQF 148
Query: 169 IYK-EPYGPALP---FLATMPPLGIFSKEFYEKVGPVQF----GQTPAGTGPYYVVKWVR 220
++ P A + + P IF +KV + F + G+GPY + K +
Sbjct: 149 VFSGTPNVWAWRNELYSVLILPEHIFKNIDPQKVIHMTFLGDEQKYLVGSGPYKLYKVIE 208
Query: 221 GAYIEYKRNP-YWKREYRPDPALKNPGPPYI---ETIRFRIIKEPFTL------VSEFKA 270
+ RN +W +Y P+ K Y+ + +K + + E K
Sbjct: 209 QQKAIFVRNDNWWGAKYFGLPSPKYIVQLYVGSNDQAANMFLKGDLDVGTYYVDIVELKK 268
Query: 271 GNIHVL--LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAI 328
N H++ LD PP F ++P + Y FN + P ++ VR+AI AI
Sbjct: 269 KNPHIVSWLDRPPYF---------PPVVPVIMY------FNVKHKPLDNPLVRKAIAEAI 313
Query: 329 NREEIIKYALEGLAVPVHGPLVPSMNGYSEKME-EYAKQKYPY---DPEKAKQLLAEAGW 384
+I++ +P PL M + EK+ +KY + +P +A +LL EAG
Sbjct: 314 CPAQIVQQGPIS-DLPDQTPLGNVMKPWKEKIGVSQLIEKYGWRYCNPTEAAKLLDEAGI 372
Query: 385 VDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTD 444
D DGDGI E NG F++ + + +II QL +GIKV ++ + +
Sbjct: 373 KDVDGDGIRE-YNGKDFVLTFAACGVCSDWMQAVEIIVNQLKAVGIKVDVKKYDWGTMVS 431
Query: 445 LVSKG-----LHQMYLFRYGLQDAQI-LLYMFHSKK--GVKRMFFYRKDLDEALDKMGTT 496
G +H F+ LLY + K+ G +Y ++E LD++ T
Sbjct: 432 KQQAGEFDLTMHWAGTFKPDPYSVYYDLLYYKNDKEKGGANFGNYYNPKVNELLDELAKT 491
Query: 497 VDPEERQKYIEEAEKILIDGAPMVPLYARKVF 528
D ++ + + E KI + P VPLY +F
Sbjct: 492 PDEAKQVQLLAELTKIWLQDVPAVPLYMGTLF 523
>dbj|BAA14855.1| (D90767) Peptide transport periplasmic protein SapA precursor.
[Escherichia coli] >gi|1742125|dbj|BAA14864.1| (D90768)
Peptide transport periplasmic protein SapA precursor.
[Escherichia coli]
Length = 547
Score = 104 bits (256), Expect = 4e-21
Identities = 131/568 (23%), Positives = 233/568 (40%), Gaps = 81/568 (14%)
Query: 14 LAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW- 72
L++ LV AG + G + SP A ++ +V V + +T +P K++
Sbjct: 5 LSSLLVIAGLVSGQAIAAPE-------SPPH--ADIRDRVFVYCVSGQVNTFNPSKASSG 55
Query: 73 --VDITTGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPIT-- 127
VD + L+++ +++P LAESWE+ ++G FHLR+ + + T
Sbjct: 56 LIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPT 115
Query: 128 ----AEDVKFVFDRLM---NP--ETRSPMAPL-----VLGPLKEVKVIDDYTVQLIYKEP 173
A+DV F F R+ NP P +K V+ +D++TV+ +P
Sbjct: 116 RKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQP 175
Query: 174 YGPALPFLATMPPLGIFSKEFYEKV----GPVQFGQTPAGTGPYYVVKWVRGAYIEYKR- 228
L LAT + S E+ K+ Q + P GTGPY + ++ G +I +R
Sbjct: 176 DASFLWHLAT-HYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRH 234
Query: 229 NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLA 288
+ +W+ G P + + + +S+ G VL L
Sbjct: 235 DDFWR------------GKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILR 282
Query: 289 NDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGP 348
+DP + + + Y+ FN K P N+ VR A+ +AIN + +++ G A
Sbjct: 283 DDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASI 342
Query: 349 LVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIS 408
L + Y + + Y+P K+++ L G LE+ +++W+
Sbjct: 343 LPRASWAYDNE-----AKITEYNPAKSREQLKSLG---------LEN-----LTLKLWVP 383
Query: 409 TGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQ 464
T K A++IQA +A++G+KV I VE + H + L +
Sbjct: 384 TRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSND 443
Query: 465 --------ILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDG 516
+ HS+ + + D L K ++ R + +EA+ IL
Sbjct: 444 PDSFFRPLLSCAAIHSQTNLAH--WCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQE 501
Query: 517 APMVPLYARKVFLAYRKDVVEGIVINPY 544
P++PL + AYR D ++G+V++P+
Sbjct: 502 LPILPLASSLRLQAYRYD-IKGLVLSPF 528
>sp|P55669|Y4TO_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN Y4TO
PRECURSOR >gi|2182645|gb|AAB91868.1| (AE000098) Y4tO
[Rhizobium sp. NGR234]
Length = 531
Score = 103 bits (254), Expect = 6e-21
Identities = 118/472 (25%), Positives = 199/472 (42%), Gaps = 41/472 (8%)
Query: 80 VFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLM 139
++ TL + + + P + +W +S+D K TF LR G+ G P+TA D R
Sbjct: 64 IYDTLFSADSQSQPHPQMVGNWGVSDDKKTYTFELRDGLGWHDGTPVTAADCVASIRRWA 123
Query: 140 NPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVG 199
+ +++ ++ DD T + KEP G LA P + K+ +
Sbjct: 124 QVGSG---GQILMSRASDISKKDDRTFVISLKEPLGALPSILAFEGPFIMREKD--AGLP 178
Query: 200 PVQFGQTPAGTGPYYVVKWVR--GAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRI 257
P + G+GP+ + GA Y RN + P + Y++ + + I
Sbjct: 179 PTEQVTANIGSGPFKFNHDLAKPGASFTYDRNEKYVPRKEPPDGMAGGKTVYVDRVVWDI 238
Query: 258 --IKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEY--VLHYIGFNCQKY 313
+ +P T V+ + G I L P + + +DPN++ + AL V + NC +
Sbjct: 239 GVLADPQTSVAALQTGEIDFLYRPPIDLLPLIESDPNLK-LEALNRAGVDMTLRMNCLQA 297
Query: 314 PFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM---EEYAKQKYPY 370
PFN + RQA+ +++E +++ A P + V SM G + + E K
Sbjct: 298 PFNSVKARQALLHLVDQEAVLRAAYGN---PQYFKPVTSMFGNTAAVTNDENTGWFKPGG 354
Query: 371 DPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGI 430
DPEKAKQL EAG+ G K ++ +T E +Q++ A+L +IG+
Sbjct: 355 DPEKAKQLFKEAGYA------------GEKIVILQ--ATDWAEQSNASQVVAAKLREIGV 400
Query: 431 KVKIR------TVEESSFTDLVSKGLHQMYLF-RYGLQDAQILLYMFHSKKGVKRMFFYR 483
++ V S D V G +++ + A + + + G K + +
Sbjct: 401 NAELAPSDWGGLVSRRSKRDSVDNGGWSIFITDQSEATRANVFTDISLAMNGEKAWYGWP 460
Query: 484 K-DLDEALDKMGTTVDP-EERQKYIEEAEKILIDGAPMVPLYARKVFLAYRK 533
K D EAL T++ +ER+ E +K+ D P VPL V AY K
Sbjct: 461 KNDEYEALRAKWLTLETLDERKALAREMQKLWWDYVPEVPLGQNIVPSAYSK 512
>gi|11497010 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppAIV) [Borrelia burgdorferi]
>gi|7442333|pir||D70218 oligopeptide ABC transporter,
periplasmic oligopeptide-binding protein (oppAIV)
homolog - Lyme disease spirochete plasmid B/cp26
>gi|2281468|gb|AAC46280.1| (AF000948) OppAIV [Borrelia
burgdorferi] >gi|2689891|gb|AAC66315.1| (AE000792)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein (oppAIV) [Borrelia
burgdorferi]
Length = 530
Score = 102 bits (252), Expect = 1e-20
Identities = 125/511 (24%), Positives = 217/511 (42%), Gaps = 71/511 (13%)
Query: 61 DPDTLDPQ---KSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKG 117
+P TLD Q + I + + L G PGLA+SW+IS+DG V TFHLR
Sbjct: 40 EPATLDAQLINDTVGSGIVSQMFLGILDGDPRTGGYRPGLAKSWDISDDGVVYTFHLRDN 99
Query: 118 IRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKE---------------VKVID 162
+ + G ITAE ++ + R+++ ET S ++ +K +K +D
Sbjct: 100 LVWSDGVSITAEGIRKSYLRILDKETGSSFVNMIKSVIKNAEEYFDGKANESELGIKALD 159
Query: 163 DYTVQLIYKEPYGPALPFLATMP----PLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKW 218
+ T+++ K P L L P+ + K P + +GP+ +
Sbjct: 160 EKTLEITLKSPKPYFLDMLVHQTFIPVPMHVIEKYGQRWTDP----ENMVVSGPFKLKSR 215
Query: 219 VRGAYIEY-KRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLL 277
V + K N Y+ N +++I F + T + + + +
Sbjct: 216 VLNEKVVLEKNNKYY-----------NSKDVVLDSIIFFVTDNSITAYNMYLNDELDAIF 264
Query: 278 -DVPPEFYKDL-ANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
+VPP+ KDL D M + Y N + P ++ +VR+A++ AI+R+ + +
Sbjct: 265 KNVPPDLLKDLKLRDDYYSM--GINSTSFY-SLNMKVKPLDNVKVRKALSFAIDRKTLTE 321
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
L ++P P YS Y +D E AK+LLA+AG+
Sbjct: 322 SVLNDSSIPTR-RATPDYIDYS-----YKSNLSLFDAEMAKKLLADAGY----------- 364
Query: 396 KNGNKF-IVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKGLHQM 453
NGN F ++++ +T + + K+A+ IQ Q K + I V++ E S++ + G ++
Sbjct: 365 PNGNNFPLLKVKYNTSDSQR-KIAEFIQNQWKKNLNINVQLENEEWSTYINSRVNGNYE- 422
Query: 454 YLFRYG----LQDAQILLYMFHSKKGVKRMFFY-RKDLDEALDKMGTTVDPEERQKYIEE 508
+ R G D L +F ++ + Y + DE L K D +RQ+ +++
Sbjct: 423 -IIRSGWSGDYADPMTFLSIFQTENTSFSSYGYSNSEYDELLIKSDNERDIFKRQEILKK 481
Query: 509 AEKILID-GAPMVPLYARKVFLAYRKDVVEG 538
AE I+I+ P V L +R D +G
Sbjct: 482 AEAIIIERDFPAVFLNITSSSYLFRNDKWKG 512
>pir||C75118 dipeptide abc transporter, dipeptide-binding protein (dppa) PAB1871
- Pyrococcus abyssi (strain Orsay)
>gi|5458171|emb|CAB49660.1| (AJ248285) dipeptide ABC
transporter, dipeptide-binding protein (dppA)
[Pyrococcus abyssi]
Length = 705
Score = 102 bits (251), Expect = 1e-20
Identities = 110/442 (24%), Positives = 176/442 (38%), Gaps = 104/442 (23%)
Query: 92 KIIPGLAESWEISEDGKVITFHLRKGIR-----DALGNPITAEDVKFVFDRL-------- 138
++ P LA +W +++G F +R G++ PI A DV F F R+
Sbjct: 258 EVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVS 317
Query: 139 ------MNPETRSPMA-----------PLVL---GPLKEVKVIDDY------------TV 166
MN + PLV G EVK + +
Sbjct: 318 WMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVF 377
Query: 167 QLIYKEPYGPAL-----PFLATMPPLGIFSKEFYEKVGPVQFGQTP-------------- 207
+L+ PY L PFL+ +P + ++ E + +G+ P
Sbjct: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
Query: 208 ---------AGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRII 258
GTGP+YV + +YI + NPY+ A NPG + + + I
Sbjct: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWN------ATDNPGH---KRVIYIIN 488
Query: 259 KEPFTLVSEFKAGNIHVLLDVPPEFYKDL--ANDPNVEMIPALEY---VLHYIGFNCQKY 313
+ V G V +P + +D+ N E+I + VL +I FN QK
Sbjct: 489 SDAVARVQLLTTGTADVAA-IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKE 547
Query: 314 PFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPE 373
PFND +VRQA+ AI ++I K L P GP+ GY+ EY KY Y+
Sbjct: 548 PFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYT----EYGIIKYNYNIA 603
Query: 374 KAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVK 433
KAKQ+L EAG + +K+ +++ + G + K+ +IQ +++G KV
Sbjct: 604 KAKQMLQEAG------------IDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVT 651
Query: 434 IRTVEESSFTDLVSKGLHQMYL 455
+ + E + KG + +Y+
Sbjct: 652 VESYEWPVYLSKTEKGDYDVYV 673
>dbj|BAA97043.1| (AB015765) SapA [Vibrio alginolyticus]
Length = 469
Score = 101 bits (249), Expect = 2e-20
Identities = 116/484 (23%), Positives = 198/484 (39%), Gaps = 67/484 (13%)
Query: 94 IPGLAESWEISEDGKVITFHLRKGIRDALGN------PITAEDVKFVFDRLMNPE----- 142
+ +AESW ++E G TF L++ ++ + P+ A+DV F F R+++ +
Sbjct: 8 VANIAESWSVNESGTEYTFKLKRNVQFQTTSWFTPTRPLNAKDVVFSFKRIIDVDHPFHQ 67
Query: 143 TRSPMAPLVLGP-----LKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEK 197
P G L++V ID++TV+ +P L +AT + I S E+ ++
Sbjct: 68 VGGGFYPWFAGLDFQNLLQDVTAIDEHTVRFTLSQPNFSFLANIATSHAV-ILSAEYGQQ 126
Query: 198 VGPV----QFGQTPAGTGPYYVVKWVRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIET 252
+ + Q P GTGPY + ++ I +R+ YWK P +E
Sbjct: 127 LAAKDHKEEIDQLPIGTGPYQLKEYQVNDLIRLERHSNYWK------------SPAKMEQ 174
Query: 253 IRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQK 312
+ F I +++ VL + + N+E+ + +I N +
Sbjct: 175 VVFDISHRGTGTLAKLLRNECDVLSSPISSQIPVIQENDNLELTATPANNVSFIAINTET 234
Query: 313 YPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDP 372
+D RVRQA+N+AINR+ I+ G + L P+ Y + K YD
Sbjct: 235 TALSDARVRQALNLAINRQNILDSVYYGTGSQAYTLLPPNSWAYQKD-----SVKIRYDR 289
Query: 373 EKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWI----STGELEAPKVAQIIQAQLAKI 428
A LL +AG+ D LE + MW+ K A++IQA A I
Sbjct: 290 NYALALLRDAGYEDG-----LE--------LTMWVPLEPRAFNPSPRKTAELIQANFADI 336
Query: 429 GIKVKIRTVEESSFTDLVSKGLHQMYLFRYG-LQDA-------QILLYMFHSKKGVKRMF 480
G+++ + T + DL + ++ + L G + D + LL + G+
Sbjct: 337 GVELTLLTDDRFERVDL--ENINDIDLLLTGWIGDTGDPDNFFRPLLSCESDRVGLNVSM 394
Query: 481 FYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIV 540
+ D D LD T +P R +A+ IL P++PL F + K + G
Sbjct: 395 WCNDDFDFLLDLALETQEPRYRLNLYRQAQNILNQEFPVIPLAHGVQFRVHDKSLT-GFK 453
Query: 541 INPY 544
+P+
Sbjct: 454 SSPF 457
>sp|Q47622|SAPA_ECOLI PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|7442324|pir||A64878 peptide transport periplasmic
protein sapA precursor - Escherichia coli
>gi|1279400|emb|CAA65937.1| (X97282) SapA protein
[Escherichia coli] >gi|1787551|gb|AAC74376.1| (AE000227)
homolog of Salmonella peptide transport periplasmic
protein [Escherichia coli K12]
Length = 547
Score = 100 bits (247), Expect = 4e-20
Identities = 130/568 (22%), Positives = 231/568 (39%), Gaps = 81/568 (14%)
Query: 14 LAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW- 72
L++ LV AG + G + SP A ++ V + +T +P K++
Sbjct: 5 LSSLLVIAGLVSGQAIAAPE-------SPPH--ADIRDSGFVYCVSGQVNTFNPSKASSG 55
Query: 73 --VDITTGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPIT-- 127
VD + L+++ +++P LAESWE+ ++G FHLR+ + + T
Sbjct: 56 LIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPT 115
Query: 128 ----AEDVKFVFDRLM---NP--ETRSPMAPL-----VLGPLKEVKVIDDYTVQLIYKEP 173
A+DV F F R+ NP P +K V+ +D++TV+ +P
Sbjct: 116 RKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQP 175
Query: 174 YGPALPFLATMPPLGIFSKEFYEKV----GPVQFGQTPAGTGPYYVVKWVRGAYIEYKR- 228
L LAT + S E+ K+ Q + P GTGPY + ++ G +I +R
Sbjct: 176 DASFLWHLAT-HYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRH 234
Query: 229 NPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLA 288
+ +W+ G P + + + +S+ G VL L
Sbjct: 235 DDFWR------------GKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILR 282
Query: 289 NDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGP 348
+DP + + + Y+ FN K P N+ VR A+ +AIN + +++ G A
Sbjct: 283 DDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASI 342
Query: 349 LVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIS 408
L + Y + + Y+P K+++ L G LE+ +++W+
Sbjct: 343 LPRASWAYDNE-----AKITEYNPAKSREQLKSLG---------LEN-----LTLKLWVP 383
Query: 409 TGEL----EAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQ 464
T K A++IQA +A++G+KV I VE + H + L +
Sbjct: 384 TRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSND 443
Query: 465 --------ILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDG 516
+ HS+ + + D L K ++ R + +EA+ IL
Sbjct: 444 PDSFFRPLLSCAAIHSQTNLAH--WCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQE 501
Query: 517 APMVPLYARKVFLAYRKDVVEGIVINPY 544
P++PL + AYR D ++G+V++P+
Sbjct: 502 LPILPLASSLRLQAYRYD-IKGLVLSPF 528
>emb|CAB01955.1| (Z79692) ORF23 [Sinorhizobium meliloti]
Length = 537
Score = 100 bits (247), Expect = 4e-20
Identities = 123/499 (24%), Positives = 217/499 (42%), Gaps = 70/499 (14%)
Query: 63 DTLDPQKSTW---VDITTGLVFAT-LINMGTNGKIIPGLAESWEISEDGKVITFHLRKGI 118
++LDP +TW V T G + L+ + G+I LAES+E S+D K F +RKG+
Sbjct: 74 NSLDP--ATWASQVPYTFGRCWGEQLLEVSPAGEIEYRLAESYEASKDAKTWAFTIRKGV 131
Query: 119 RDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVI--DDYTVQLIYKEPYGP 176
G +T DV F+R + ++S P V +E + I D V + ++P
Sbjct: 132 TFHNGKELTPADVVATFERHADKNSKSAALPFV----QEFETIKADGDKVVITLRQP-NA 186
Query: 177 ALPFLATMPPLGIFSKEFYEKVGPVQFGQTPA---GTGPYYVVKWVRGA-YIEYKRNPYW 232
+PF+ + +++ + P P GTGPY VV G ++ +++ YW
Sbjct: 187 DMPFIVS---------DYHLMIQPNGGKDDPTAGIGTGPYKVVVNEPGVKHVGERQDGYW 237
Query: 233 KREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPN 292
R + + I +I + + +AG +H++ + P+ + P
Sbjct: 238 GAAER----------GHADQIEITVINDATARTASLQAGGVHIINRIEPKIVALVKRIPG 287
Query: 293 VEM--IPALEYVLHYIGF-NCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPL 349
V + +P HY+ +C PF++ +R A+ A++REE++ L G G
Sbjct: 288 VTIRNVPGKG---HYVLIAHCNTAPFDNNDLRLALKYAVDREEMVAKILAGYGTV--GND 342
Query: 350 VPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIST 409
P + GY ++ +Q+ +DP++AK ++G DG +L T
Sbjct: 343 TPMIKGY-PLFDDDIEQRV-FDPDRAKFHFKKSG---HDGSILLR--------------T 383
Query: 410 GELEAP---KVAQIIQAQLAKIGIKVKI-RTVEESSFTDLVSKGLHQMYLFRYGLQDAQI 465
++ P AQ+ QA AK GI V++ R + ++D+ +K M + Q+
Sbjct: 384 SDVAFPGAVDAAQLFQASAAKCGIDVELKREPGDGYWSDVWNKQPFSMSYWTGRPTQDQV 443
Query: 466 LLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILID-GAPMVPLYA 524
+ SK F+R+D D+ + +D +R+ EA IL D G + P++
Sbjct: 444 YSIAYLSKAEWNDTRFFREDFDKLIFAARGELDEAKRKVLYREAAMILRDEGGVIAPMFN 503
Query: 525 RKVFLAYRKDVVEGIVINP 543
++ D V G V +P
Sbjct: 504 N--YIDATSDKVGGWVDDP 520
>pir||T34583 probable periplasmic oligopeptide binding protein - Streptomyces
coelicolor >gi|2815324|emb|CAA16448.1| (AL021529)
SC10A5.16c, possible periplasmic oligopeptide bindin g
protein, len: 521; weak similarity to many eg.
OPPA_SALTY P06202 periplasmic oligopeptide-binding
protein (542 aa), fasta scores; opt: 343 z-score: 306.2
E(): 7.4e-10, 25.0% i dentity in>
Length = 521
Score = 99.1 bits (243), Expect = 1e-19
Identities = 136/524 (25%), Positives = 203/524 (37%), Gaps = 47/524 (8%)
Query: 28 TPTQTQTQTGTGTS--PTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITT--GLVFAT 83
TPT T G PT+ KV G T P +LDP TT VF T
Sbjct: 14 TPTVIATALAAGLLLYPTDDQEGTTIKV---GTTEPPTSLDPAGGYDSGSTTLYSNVFQT 70
Query: 84 LINMGTN-GKIIPGLAESWEISEDG-KVITFHLRKGIRDALGNPITAEDVKFVFDRLMNP 141
L+ + + +P AES ++ G + LR I + G +TA+DV+F F+R+
Sbjct: 71 LLTLEPGVAEPVPDAAESCSFTDSGLRTYRCRLRDDITFSSGRRMTAKDVRFSFERVKKI 130
Query: 142 ETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPV 201
+ S + P L E D TV P PF T I Y
Sbjct: 131 D--SDVGPSSLLDTIESMDARDRTVTFRLTAP-DATFPFKLTTGAGSIVDSTTYPADSLR 187
Query: 202 QFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEP 261
G+ GTGPY VV + +G I NP +K A +N G P I P
Sbjct: 188 SDGRID-GTGPYGVVSYAKGEKISLSPNPRYKG------AAENTGRP----IELHFYDTP 236
Query: 262 FTLVSEFKAGNIHVLL-DVPPEFYKDL-ANDPNVEMIPALEYVLHYIGFNCQK-YPFNDT 318
+L + + I V L +PPE DL +DP + + A + N ++ PF+D
Sbjct: 237 DSLARAWISHRIDVALRQLPPEMLADLNPSDPGLRVTEAQSAETRNLYLNNRRGKPFHDR 296
Query: 319 RVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPY-DPEKAKQ 377
R RQA I+R+ I +G P++ + S+ G++ + YP+ D EKA++
Sbjct: 297 RARQAAAWLIDRDRISYDVYDGTVDPLYSLIPTSITGHTTSFFD----NYPHKDAEKARR 352
Query: 378 LLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGI-KVKIRT 436
LL EAG + G A + A ++ QL G+ KV +R
Sbjct: 353 LLVEAG-------------EEIPLSFTYGYAAGRGSAHEEAAEVKKQLEADGLFKVTLRG 399
Query: 437 VEESSFTDLVSKGLHQMYLFRY--GLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMG 494
E F ++G Y + D G + K D +
Sbjct: 400 YEWDEFQKSWAEGELDAYAVGWVADYPDPDTFGGPLVGTDGTMATGYGSKAADRLITSSQ 459
Query: 495 TTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEG 538
D + + +E ++I+ P+VPL+ K F+ +DV G
Sbjct: 460 RFADRSDAEADLEALQRIVARDVPVVPLWQAKDFVVSGEDVGGG 503
>pir||A75069 dipeptide transport protein precursor (dip eptide-binding protein)
PAB1343 - Pyrococcus abyssi (strain Orsay)
>gi|5458959|emb|CAB50446.1| (AJ248287) DIPEPTIDE
TRANSPORT PROTEIN PRECURSOR (DIP EPTIDE-BINDING PROTEIN)
[Pyrococcus abyssi]
Length = 633
Score = 98.7 bits (242), Expect = 2e-19
Identities = 132/516 (25%), Positives = 217/516 (41%), Gaps = 63/516 (12%)
Query: 50 KHKVLVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMG-TNGKIIPGLAE--SWEISED 106
+ + L + P +P + + GLVF L + +++P LAE W S
Sbjct: 29 REQTLYTANSSPPTNANPVYGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSN- 87
Query: 107 GKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTV 166
V LR+G + G P+TAEDVKF F+ ++ L+E+KV+DD T+
Sbjct: 88 --VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEY----GLREIKVVDDRTI 141
Query: 167 QLIY-KEPYGPALP---FLATMPPLGIFSKEFYEKVGPVQF----GQTPAGTGPYYVVKW 218
Q ++ K P A + + P +F + V + F + G+GPY + K
Sbjct: 142 QFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKV 201
Query: 219 VRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIET--------IRFRI-IKEPFTLVSEF 268
V + RN +W Y PA K Y+++ +R + + + + E
Sbjct: 202 VPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVEL 261
Query: 269 KAGNIHVL--LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINM 326
K N +++ LD PP F ++P + Y FN + P ++ VR+AI
Sbjct: 262 KKKNPNIVSWLDRPPYF---------PPVVPVIMY------FNTKHKPLDNPLVRKAIAE 306
Query: 327 AINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM------EEYAKQKYPYDPEKAKQLLA 380
AI +I+K +P PL M + EK+ +EY KY DP+ A +LL
Sbjct: 307 AICPAQIVKQGPIS-DLPDQTPLGNIMKSWKEKIGVSQLIKEYG-WKY-CDPQDAAKLLD 363
Query: 381 EAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEES 440
EAG D DGDG E NG ++ + + +I+ QL IGIKV +R +
Sbjct: 364 EAGIKDTDGDGWRE-YNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWG 422
Query: 441 SFTDLVSKGLHQMYLFRYGLQDAQ-------ILLYMFHSKKGVKRMF-FYRKDLDEALDK 492
+ G + + G ++ ++ Y + KG +Y +E LD+
Sbjct: 423 TMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDE 482
Query: 493 MGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVF 528
+ T D ++ + + E +I + VPLY +F
Sbjct: 483 LAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLF 518
>pir||H81668 peptide ABC transporter, periplasmic peptide-binding protein,
probable TC0765 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190790|gb|AAF39568.1| (AE002344)
peptide ABC transporter, periplasmic peptide-binding
protein, putative [Chlamydia muridarum]
Length = 696
Score = 97.9 bits (240), Expect = 3e-19
Identities = 105/465 (22%), Positives = 191/465 (40%), Gaps = 62/465 (13%)
Query: 124 NPITAEDVKFVFDRLMNP---ETRSPMAPLVLGPLKEVKVIDDYTVQLIY---------- 170
+P+TA DVKF +D +MNP E R+ + V+V +D + + +
Sbjct: 202 HPVTAHDVKFYYDVVMNPYVAEMRAVAMRSYFEDVVSVRVENDLKLVVRWRAHTVNNEQG 261
Query: 171 ----KEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT-------GPYYVVKWV 219
K Y + LA + PL F +++ + + T + W
Sbjct: 262 EEEKKVLYSAFINTLA-LQPLPCFVYKYFANGEKIVHDDSDPDTYRKDSVWAQNFSSHWA 320
Query: 220 RGAYIEYKRNPYWKREYRPDPALKNPG--PPYIETIRFRII---KEPFTLVSEFKAGNIH 274
+ + + ++NP P+ + R + +L +FKAG +
Sbjct: 321 YNYIVSCGAFRFAGMDDEKIALVRNPNYYNPFAALVEKRYVYMKDSTDSLFQDFKAGKVD 380
Query: 275 VLLDVPPE------FYKDLANDPNVEMIPAL------EYVLHYIGFNCQKYPFNDTRVRQ 322
+ P + F K A A+ + YIG+NC F D VRQ
Sbjct: 381 IAYFPPNQVDNLASFMKTAAYKEQAAKGGAIIEKNSSDRSYSYIGWNCLSLFFKDRAVRQ 440
Query: 323 AINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEA 382
A+NM I+R+ II+ L+G + GP Y+ +E + Y PE+A + L E
Sbjct: 441 AMNMLIDRDRIIEQCLDGRGSSITGPFSLCSPSYNRSVE-----GWQYSPEEASRKLEEE 495
Query: 383 GWVDRDGDGILE---DKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEE 439
GWVD DGDGI E D F + + A +A+ + +IGI+ + ++
Sbjct: 496 GWVDADGDGIREKVIDGVVVPFRFRLCYYVKSVTARTIAEYVATVCKEIGIECCLLGLDM 555
Query: 440 SSFTDLVSKGLHQMYLFRYGL----QDAQILLYMFHSKKGVKR-----MFFYRKDLDEAL 490
+ ++ + + L + L +D + L +HS+ +++ + F K+ D +
Sbjct: 556 ADYSQALEEKNFDAILSGWSLGTPPEDPRSL---WHSEGALEKGSANAVGFCNKEADRII 612
Query: 491 DKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDV 535
+++ DP +RQ+ +++ + +P LY+R+ L ++K V
Sbjct: 613 EQLSYEYDPNKRQELYHRFHEVIHEESPYAFLYSRQYSLVHKKYV 657
>pir||E71510 probable oligopeptide binding lipoprotein - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328915|gb|AAC68080.1|
(AE001321) oligopeptide Binding Lipoprotein [Chlamydia
trachomatis]
Length = 696
Score = 97.5 bits (239), Expect = 3e-19
Identities = 113/474 (23%), Positives = 199/474 (41%), Gaps = 69/474 (14%)
Query: 124 NPITAEDVKFVFDRLMNP---ETRSPMAPLVLGPLKEVKVIDDYTVQLIY---------- 170
+P+TA DVKF +D +MNP E R+ + V+V +D + + +
Sbjct: 202 HPVTAHDVKFYYDVVMNPYVAEMRAVAMRSYFEDMVSVRVENDLKLIVRWRAHTVRNEQG 261
Query: 171 ---KEPYGPALPFLATMPPLGIFSKEFY---EKVGPVQ-----------FGQTPAGTGPY 213
K+ A + PL F + + EK+ P + Q + Y
Sbjct: 262 EEEKKVLYSAFANTLALQPLPCFVYQHFANGEKIVPEDSDPDTYRKDSVWAQNFSSHWAY 321
Query: 214 -YVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGN 272
Y+V GA+ + K +P NP +E + +L +FKAG
Sbjct: 322 NYIVSC--GAF-RFAGMDDEKITLVRNPNYHNPFAALVEKRYIYMKDSTDSLFQDFKAGK 378
Query: 273 IHVLLDVPPEFYKDLANDPNV----EMIPALEYVLH---------YIGFNCQKYPFNDTR 319
+ + PP +LA+ E E +L YIG+NC FN+
Sbjct: 379 VDIAY-FPPNHVDNLASFMQTSAYKEQAARGEAILEKNSSDRSYSYIGWNCLSLFFNNRS 437
Query: 320 VRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLL 379
VRQA+NM I+R+ II+ L+G V V GP Y+ +E + Y PE+A + L
Sbjct: 438 VRQAMNMLIDRDRIIEQCLDGRGVSVSGPFSLCSPSYNRDVE-----GWQYSPEEAARKL 492
Query: 380 AEAGWVDRDGDGILE---DKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRT 436
E GW+D DGDGI E D F + + A +A+ + ++GI+ +
Sbjct: 493 EEEGWIDADGDGIREKVIDGVVVPFRFRLCYYVKSVTARTIAEYVATVCKEVGIECCLLG 552
Query: 437 VEESSFTDLVSKGLHQMYLFRYGL----QDAQILLYMFHSKKGVKR-----MFFYRKDLD 487
++ + ++ + + L + L +D + L +HS+ +++ + F ++ D
Sbjct: 553 LDMADYSQALEEKNFDAILSGWCLGTPPEDPRAL---WHSEGALEKGSANAVGFCNEEAD 609
Query: 488 EALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVI 541
++++ D +RQ +++ + +P LY+R+ L Y K+ V+ I +
Sbjct: 610 RIIEQLSYEYDSNKRQALYHRFHEVIHEESPYAFLYSRQYSLVY-KEFVKNIFV 662
>emb|CAA20251.1| (AL031231) putative peptide transport system secreted peptide
binding protein [Streptomyces coelicolor A3(2)]
Length = 621
Score = 97.5 bits (239), Expect = 3e-19
Identities = 117/526 (22%), Positives = 198/526 (37%), Gaps = 57/526 (10%)
Query: 52 KVLVIGYTRDPDTLDPQKSTWVDITT--GLVFATLINMGT-NGKIIPGLAESWEISEDGK 108
KVL + + D+L P + + T+ L + L N + +IPGLA W+ S D
Sbjct: 54 KVLTVAVAQSVDSLSPFLAVRLLSTSIHRLTYEYLTNYDAKDNHVIPGLATEWKSSPDKL 113
Query: 109 VITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQL 168
T+ +R + + G TAED + F+ +M + +G EV + +
Sbjct: 114 TWTYTIRSDSKWSDGEQATAEDAAWTFNTMMTDPGAATANGSFVGNFAEVTAPSPTQLVI 173
Query: 169 IYKEPYGPALPFLATMPPLGI------FSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGA 222
K+P + P + FSK +K PV G GP+ + + +
Sbjct: 174 RLKKPQATMTALDVPIVPKHVWEKVDDFSKFNNDKDFPV------VGNGPFVLTDYKPDS 227
Query: 223 YIEYKRN-PYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVP- 280
Y+ K N +W+ G P + + FR K+ V+ + G + + P
Sbjct: 228 YVRLKANKDFWR------------GAPKFDELVFRYYKDQDAAVAALRKGEVSFVAGSPS 275
Query: 281 --PEFYKDLANDPNVEMIPALEYVLHYIG------------FNCQKYPFNDTRVRQAINM 326
P L + N+ + A + + F D RVR A+ M
Sbjct: 276 LTPAQADSLKGEENIRVNDAPGRRFYALATNPGARAKDGTRFGDGDPSLLDQRVRNALFM 335
Query: 327 AINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVD 386
A++R+ I+ +G AV G + P + Y E +Q+ YDP KA QLL EAG+
Sbjct: 336 AVDRKAIVDKVFQGHAVEGAGYIPPRFSSYF--FEPSGEQELAYDPAKAAQLLDEAGY-R 392
Query: 387 RDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLV 446
D DG K+G + + V + +Q ++GI V + ++ + TD
Sbjct: 393 TDSDGKRLGKDGKPLDYRILCHATDPNDKAVGKYLQEWWGELGISVTLNCLD--NVTDPW 450
Query: 447 SKGLHQMYLFRYGLQDAQILLYMFHS---------KKGVKRMFFYRKDLDEALDKMGTTV 497
G + + + + + H+ G F K D+ +
Sbjct: 451 LAGKYDLAFDGWSVNPDPDFVLSIHTCAALPATPKDTGATDNFICDKKYDDLYARQLGEY 510
Query: 498 DPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
D +R +++ + L D M + AYR D +E I P
Sbjct: 511 DAGKRAAIVKQMQSRLYDTGYMNVMAYPNAVEAYRTDQIESITTMP 556
>gb|AAC67217.1| (U78968) surface lipoprotein DppA [Streptococcus pyogenes]
Length = 542
Score = 97.1 bits (238), Expect = 5e-19
Identities = 112/481 (23%), Positives = 205/481 (42%), Gaps = 59/481 (12%)
Query: 50 KHKVLVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKV 109
K +++V + P DP+ V + +TL+ I LA+++ +SEDG
Sbjct: 40 KDELVVSMGAKLPHEFDPKDRYGVHNEGNITHSTLLKRSPELDIKGELAKTYHLSEDGLN 99
Query: 110 ITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLI 169
F L + + G P TA+DVKF +D L ++ L +K V+V+ + + +
Sbjct: 100 WLFDLHDDFKFSNGEPATADDVKFTYDML-----KADGKAWDLTFIKNVEVVGENQINIH 154
Query: 170 YKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRN 229
E + F A + + I K+ Y ++ P G+GPY V ++ G + RN
Sbjct: 155 LTEAHS---TFTAQLTEIPIVPKKHYND----KYKSNPIGSGPYMVKEYKAGEQAIFVRN 207
Query: 230 PYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLAN 289
PYW + PY + + ++ E T ++ ++G++ ++ PE
Sbjct: 208 PYWHGK-----------KPYFKKWTWVLLDEN-TALAALESGDVDMIY-ATPELADKKVK 254
Query: 290 DPNVEMIP-------ALEYVLH-YIGFNCQKYPF-----NDTRVRQAINMAINREEIIKY 336
+ IP +L YV I + YP +D +R+A+ + +NR++++
Sbjct: 255 GTRLLDIPSNDVRGLSLPYVKKGVITDSSDGYPVGNDVTSDPAIRKALTIGLNRQKVLDT 314
Query: 337 ALEGLAVPVHGPL--VPSMNGYSE-KMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGIL 393
L G P + + P N + K + A KAKQLL +AGW ++ DG
Sbjct: 315 VLNGYGKPAYSIIDKTPFWNPKTAIKNNKLA---------KAKQLLTKAGWKEQ-ADG-S 363
Query: 394 EDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQM 453
K +++ T + +A + Q +GI +K++ S++ ++ +K
Sbjct: 364 RKKGDLDAPFDLYYPTNDQLRANLAVEVAEQAKTLGITIKLKA---SNWDEMATKSHDSA 420
Query: 454 YLFRYGLQDAQILLYMFH---SKKGVKRMFFYRK-DLDEALDKMGTTVDPEERQKYIEEA 509
L+ G AQ H + KG + FY + + LDK T+ D ++ +Y + A
Sbjct: 421 LLYAGGRHHAQQFYESHHPSLAGKGWTNITFYNNPTVTKYLDKAMTSSDLDKANEYWKLA 480
Query: 510 E 510
+
Sbjct: 481 Q 481
>gi|10954707 hypothetical ABC-transporter gene~similar to PH0807 [Agrobacterium
rhizogenes] >gi|8918707|dbj|BAA97772.1| (AB039932)
hypothetical ABC-transporter gene~similar to PH0807 gene
[Agrobacterium rhizogenes] >gi|10567371|dbj|BAB16180.1|
(AP002086) hypothetical ABC-transporter gene~similar to
PH0807 [Agrobacterium rhizogenes]
Length = 521
Score = 96.7 bits (237), Expect = 6e-19
Identities = 135/525 (25%), Positives = 215/525 (40%), Gaps = 76/525 (14%)
Query: 33 QTQTGTGTSPTETTAA-LKHKVLVIGY-TRDPDTLDPQKSTWVDITTGLVFATLINMGTN 90
+T TG + TT A + + V GY TR P T P+K + ++ + T
Sbjct: 47 ETLTGNWDPSSHTTLAQINLESFVFGYLTRAPMT--PEKPDEL----------VMELATE 94
Query: 91 GKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPL 150
K+I D + F LR+G+ G P +AEDVK ++ P+ + P
Sbjct: 95 MKLI-----------DEHTLEFKLREGVTFHDGKPFSAEDVKATYEYASRPDRPAAWYP- 142
Query: 151 VLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT 210
GP EV+V+ DY ++ + PA F L I S + + P P GT
Sbjct: 143 --GPC-EVEVVSDYVARVKTDKAGYPASLFWFLSSFLPIMSAK--DVADPKTLSARPNGT 197
Query: 211 GPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
G + VK + + ++ G P I + F + + T
Sbjct: 198 GGFKFVKQDGNTTVLEAFDNFYL------------GKPTIPGLHFSFVGDATTRTLALLN 245
Query: 271 GNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINR 330
G ++ + E + + ++ A+ Y+ F C K PFND R+R+A+ AI+R
Sbjct: 246 GEADLIERLEAEQVETIEKTGGFQLHKAISVENKYLWFRCSKPPFNDWRLRRAVCHAIDR 305
Query: 331 EEIIKYALEGLAVPVHGP---LVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDR 387
I + L V H + P GY + + Y K +DPE+ ++LLAEAG+
Sbjct: 306 SVID----DILGVSGHASNCYVSPVKFGYVD-IPNYPK----FDPEQCQKLLAEAGF--P 354
Query: 388 DGDGILEDKNGNKFIVEMWISTGELEAPK-VAQIIQAQLAKIGIKVKIRTVEESSFTDLV 446
G+G+ E +E S G K A+ I A L + G VK+ +E +++ D +
Sbjct: 355 KGEGLPE--------LEYITSVGFYPKTKEYAEAITAMLQEQGFPVKLNVMEVAAWGDAL 406
Query: 447 --SKGLHQMYLFRYGLQDAQ-----ILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDP 499
G ++ G +L FHS + ++D ALDK P
Sbjct: 407 YDRPGGGPGHMIDCGWSTGSPEPDLVLRTHFHSTTH-RICGIQDPEIDAALDKERNAAKP 465
Query: 500 EERQKYIE-EAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVINP 543
EER+K I+ E +L P L+ VF+ +D + G+ I P
Sbjct: 466 EERKKVIQTELMPLLATKTPSFSLFT-SVFIHGMRDGLSGLYIYP 509
>gb|AAG22034.1|AF305387_1 (AF305387) OppA [Bacillus thuringiensis]
Length = 551
Score = 96.7 bits (237), Expect = 6e-19
Identities = 130/558 (23%), Positives = 236/558 (41%), Gaps = 63/558 (11%)
Query: 14 LAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTWV 73
L A+ + A + G Q G T T+++ +VL + + ++D ++
Sbjct: 8 LLASTLTASMLLGACSYQKDDAKAKGKENT-TSSSNGKQVLNLTELSEIPSMDASLASDS 66
Query: 74 DITTGL--VFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDV 131
+T L L +G + K +PG+AE + +DGK F LRK + + G P+TA+D
Sbjct: 67 ASSTALNNTMEGLYRIGKDQKRVPGIAEDVQKLDDGKKYIFKLRKDAKWSNGEPVTAKDF 126
Query: 132 KFVFDRLMNPETRSPMAPLVLG------------PLKE--VKVIDDYTVQLIYKEPYGPA 177
+ + R +NP+T++ + ++ P + VK IDDYT+++ P P
Sbjct: 127 VYSWKRAVNPDTKATYSYIMFDIKNAEKIHKKELPADQLGVKAIDDYTLEVELDNPV-PY 185
Query: 178 LPFLATMPPLGIFSKEFYEKVGPVQFG---QTPAGTGPYYVVKWVRGAYIEYKRNP-YWK 233
L P ++ F + G +FG T GP+ + W ++K+NP YW
Sbjct: 186 FVDLTVYPVFYPLNENFVKAQGD-KFGLEANTTLYNGPFVMSDWKHEQSFQFKKNPSYWD 244
Query: 234 REYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNV 293
+ IE I F I+K T V+ ++ +I + EF +
Sbjct: 245 NK-----------TVKIEEINFNIVKNTSTDVNLYETNSID-RAALTSEFVDKFRQ--SS 290
Query: 294 EMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSM 353
E E + Y+ FN ++ +R+AI+M+ +R+ I K L A+ +G +
Sbjct: 291 EFHTRKEAGVAYLRFNQSNQYLSNKNLRKAISMSFDRDNIAKVILNNGAIGAYGFVGKDF 350
Query: 354 NGYSEKMEEYAK--QKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGE 411
K + A+ + +P++AK+L A + + G I +++
Sbjct: 351 AEGPNKKDFRAENGKLVETNPKEAKKLWETA-----------KKELGTDKIELEFLNFDN 399
Query: 412 LEAPKVAQIIQAQLAK--IGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGL-----QDAQ 464
+A KV + ++ ++ K G+ +KI+ + F Q Y +G+ D
Sbjct: 400 EDAKKVGEFLKGEMEKNLPGLSIKIK---QQPFAQKNKLEDSQQYDIAFGIWGPDFPDPI 456
Query: 465 ILLYMFHSKKGVKRMFFYRKDLDEALDKMGT-TVDPEERQKYIEEAEKILI-DGAPMVPL 522
L MF + + + + DE + K T T D + R + E EK+LI + A + P+
Sbjct: 457 SYLDMFVTNGSQNKTGYSNQKYDELILKAKTDTKDLQARWNNLLEVEKMLIKEDAVITPI 516
Query: 523 YARKVFLAYRKDVVEGIV 540
+ +K KD V+ I+
Sbjct: 517 F-QKGSAYIVKDAVKDII 533
>dbj|BAB05515.1| (AP001513) nickel ABC transporter (nickel-binding protein)
[Bacillus halodurans]
Length = 528
Score = 96.0 bits (235), Expect = 1e-18
Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 38/379 (10%)
Query: 63 DTLDPQKS-TWVDITTGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITFHLRKGIRD 120
++LDP T++ + G+ TL+ + N I P LAESW+ S DG+ T LR+ +
Sbjct: 64 NSLDPHVDMTYIPVRAGIT-ETLVRVDEENVTIAPWLAESWD-STDGQHWTIKLREDVTF 121
Query: 121 ALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPF 180
G + AE VK +R ++ A + E++ D YT+ + KEP+ +
Sbjct: 122 QNGKEMDAEAVKASLERALDESVAIENALKI----DEIEA-DGYTLHITTKEPFPEFISE 176
Query: 181 LATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKR-NPYWKREYRPD 239
L P + I V F P GTGP+ + + G+ +E R + YW
Sbjct: 177 LVN-PNVSIID------VTEEDFTNHPVGTGPFALESFTPGSKLELVRYDEYWD------ 223
Query: 240 PALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPAL 299
G ++++ F ++ ++G ++ E + L + + +
Sbjct: 224 ------GASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQANEGIMVEATE 277
Query: 300 EYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEK 359
+ H + N + D VR+A+++ ++R+EI+ + G A GP +P++
Sbjct: 278 TFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTIMLGYAEVADGPFIPTL----PF 333
Query: 360 MEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQ 419
Y K++ D A Q L EAG+ +G + +D F V + S EL P +AQ
Sbjct: 334 APSYEKKETGTD--IAIQYLEEAGYTLENGQ-MQKDGEPLHFTVLTYGSRAEL--PLIAQ 388
Query: 420 IIQAQLAKIGIKVKIRTVE 438
+ Q+ +IGI+V+IR +E
Sbjct: 389 VFQSNAKQIGIEVEIRQIE 407
>pir||S28153 hyaluronate synthase precursor - Streptococcus "equisimilis"
(strain D181) >gi|312940|emb|CAA78270.1| (Z12624)
threonine kinase [Streptococcus equisimilis]
Length = 522
Score = 94.4 bits (231), Expect = 3e-18
Identities = 131/525 (24%), Positives = 215/525 (40%), Gaps = 76/525 (14%)
Query: 42 PTETTAALKHKVLVIGYT-RDPDTLDPQKST--WVDITTGLVFATLINMGTNGKIIPGLA 98
P + +A+ K + YT + TLD K+T + + G + L+ GK+ P LA
Sbjct: 29 PNKQSASTDKKSEINWYTPTEIITLDISKNTDTYSALAIGNSGSNLLRADAKGKLQPDLA 88
Query: 99 ESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEV 158
E ++SEDG T LR G++ + G+ +TAED ++ + R+++P+T S A L V
Sbjct: 89 EKVDVSEDGLTYTATLRHGLKWSDGSDLTAEDFEYSWQRMVDPKTASEYA--YLATESHV 146
Query: 159 KVIDDYT------VQLIYKEPYGPALPFLATMP-----PLGIFS-----KEFYEKVGPVQ 202
K +D + + + G + F T+P L FS KE + K
Sbjct: 147 KNAEDINSGKNPDLDSLGVKADGNKVIFTLTVPAPQFKSLLSFSNFVPQKESFVKDAGKD 206
Query: 203 FGQTPAG---TGPYYVVKW--VRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRI 257
+G T +GPY V W G + K YW KN ET+ +
Sbjct: 207 YGTTSEKQIYSGPYIVKDWNGTSGTFKLVKNKNYWD--------AKN---VKTETVNVQT 255
Query: 258 IKEPFTLVSEFKAGNIHVL-LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQK--YP 314
+K+P T V +K G + + Y AN + +++P LE YI +N
Sbjct: 256 VKKPDTAVQMYKQGKLDFANISGTSAIYN--ANKKHKDVVPVLEATTAYIVYNQTGAIEG 313
Query: 315 FNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSE--KMEEYAKQKYPYDP 372
N ++RQA+N+A +R+ I+ A++ + P + + S+ + E+ Y YD
Sbjct: 314 LNSLKIRQALNLATDRKGIVSAAVDTGSKPATALVPTGLAKLSDGTDLTEHVAPGYKYDD 373
Query: 373 EKAKQL----LAEAG------WVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQ 422
++A +L LAE G + D D K+ +I E W
Sbjct: 374 KEAAKLFKEGLAELGKDALTITITADADAACA-KSAVDYIKETW---------------- 416
Query: 423 AQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLFRYG--LQDAQILLYMFHSKKGVKRMF 480
+ A G+ V+ + V S + ++ + +G + +F S
Sbjct: 417 -ETALPGLTVEEKFVPFSQRLEDTKNQNFEVAVVLWGGDYPEGSTFYGLFKSGSAYNYGK 475
Query: 481 FYRKDLDEALDKMGTT--VDPEERQKYIEEAEKILIDGAPMVPLY 523
F D D A +K TT ++ + + AEK L D A PLY
Sbjct: 476 FTNADYDAAYNKALTTDALNIDAAADDYKAAEKALYDNALYNPLY 520
>pir||E82377 ABC transporter, periplasmic substrate-binding protein VCA1098
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658545|gb|AAF96990.1| (AE004435) ABC transporter,
periplasmic substrate-binding protein [Vibrio cholerae]
Length = 521
Score = 91.7 bits (224), Expect = 2e-17
Identities = 115/478 (24%), Positives = 196/478 (40%), Gaps = 42/478 (8%)
Query: 80 VFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLM 139
V +L+ + N + P LA+SW +S+DG V F +R ++ G+ +TA+ + +
Sbjct: 66 VVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALNHAL 125
Query: 140 NPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVG 199
+ P+K + +D V + Y P LA L I S Y+ G
Sbjct: 126 GKP-----GVIKQVPIKAITAQNDQVV-IELNTVYRPLAAVLAHY-SLAIASPSSYDASG 178
Query: 200 PVQFGQTPAGTGPYYVVKWV---RGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFR 256
V GTGPY + + + + I + N YW + P IETI +
Sbjct: 179 NV---IRLLGTGPYQIAQLQAPHKASVIRF--NAYWGK------------PASIETINYL 221
Query: 257 IIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFN 316
+ + G ++ + P L N+++ I N + N
Sbjct: 222 AGHRSESRALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLN 281
Query: 317 DTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAK 376
VRQAI++AINRE I + L+ H P++ + ++ Q++ A+
Sbjct: 282 HADVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAW-HLADKTQPQRH---LATAQ 337
Query: 377 QLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRT 436
LLA GW D G+LE + G F V++ E P +A +QAQL +IGI+V I
Sbjct: 338 TLLANQGWTLND-QGLLE-REGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAI 395
Query: 437 VEESSFTDLVSKGLHQMYLF--RYG-LQDAQILL---YMFHSKKGVKRMFFYRKDLDEAL 490
S+ G +M L +G + D LL + H + + L
Sbjct: 396 DNSSAIPAKHHDGTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTNWSSPQFSQLL 455
Query: 491 DKMGTTVDPEERQKYIEEAEKILIDGAPMVPL-YARKVFLAYRKDVVEGIVINPYTLD 547
++ T D Q+ +A ++L D P++P+ Y R++ ++ V G +P+ ++
Sbjct: 456 AELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKR--VAGFSFDPFEIN 511
>gb|AAF73090.1|AF103793_1 (AF103793) peptide binding protein OppA [Listeria monocytogenes]
Length = 558
Score = 91.3 bits (223), Expect = 3e-17
Identities = 137/589 (23%), Positives = 233/589 (39%), Gaps = 83/589 (14%)
Query: 1 MRQKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTR 60
M++ + L L +LV C GG + + +G + E L L+
Sbjct: 1 MKKSKLFLTLGLTLLLSLVLVACGGGSDSKSDKKGSDSGKASGEQVLNLTESALI----- 55
Query: 61 DPDTLDPQKSTWVDITTGLVFATLINMGTNG------KIIPGLAESWEISEDGKVITFHL 114
ST D GL N G I G AE +IS+D V T L
Sbjct: 56 -----PSADSTKADDQVGLNVVNQTNEGLYALDKDGIPAIAGAAEEPKISDDKTVYTIKL 110
Query: 115 RKGIRDALGNPITAEDVKFVFDRLMNPETRSPMA----------PLVLGPLKE----VKV 160
R+ + + G+P+TA D + + R ++P T + + +V G K +K
Sbjct: 111 REDAKWSNGDPVTANDYVYSWRRAVDPNTAATYSYLFDAIKNGGDIVAGKKKPEELGIKA 170
Query: 161 IDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGP--VQFGQTPAGTGPYYVVKW 218
+DDYT+++ +P + L P +++F + G Q GP+ + W
Sbjct: 171 VDDYTLEVTLSKPTA-YINSLFAFPTFFPLNEKFVTEKGEKYAQNSDNMLFNGPFELKDW 229
Query: 219 --VRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL 276
+ K + YW ++ ++ I +++++ T ++ + +
Sbjct: 230 TGTNKKWTYVKNDKYWDKD-----------KVKLKQINVQVVQDSGTGLNLYNTDKVDRT 278
Query: 277 LDVPPEFYKDLA--NDPNVEMIPALEYVLHYIGFNCQKYPFNDT-----RVRQAINMAIN 329
+ D A N N + + + YI FN QK DT +R+AI +AI+
Sbjct: 279 V-----LSADYAAQNKNNKDYVTVNDSSTFYIKFN-QKRAGKDTVFANKNIRKAIALAID 332
Query: 330 REEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDG 389
++ L+ + P + LVP E K Y E K L + +
Sbjct: 333 KQSYTDTVLKNGSKPANN-LVP------EGFTFDPGNKEDYTKESGKHLEYDVKEAQKAW 385
Query: 390 DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAK--IGIKVKIRTVEESSFTDLVS 447
L++ N+ VE + S A K ++ IQ QL K G+ VK++ V F +
Sbjct: 386 KAGLKELGVNEITVE-FTSDDTENARKSSEFIQDQLQKNLDGLTVKLKNV---PFKVRLQ 441
Query: 448 KGLHQMYLFRYG-----LQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEER 502
+Q Y F QD L +F + RM + KD D+ L+ T +++
Sbjct: 442 NDQNQDYDFSMSGWGPDYQDPSTFLDLFVTDGAQNRMSYSNKDYDKILNDASVTYAADDQ 501
Query: 503 QKYIE--EAEKILI-DGAPMVPLYARKVFLAY-RKDVVEGIVINPYTLD 547
+++ E +AEKIL+ D + PLY R AY +KD ++ + NP+ D
Sbjct: 502 KRWDEMVKAEKILLTDDVAIQPLYQRST--AYLQKDYIKNLQKNPFGPD 548
>gb|AAD17886.1| (AF100456) hyaluronate-associated protein precursor [Streptococcus
equi]
Length = 522
Score = 89.7 bits (219), Expect = 8e-17
Identities = 121/494 (24%), Positives = 199/494 (39%), Gaps = 59/494 (11%)
Query: 64 TLDPQKST--WVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDA 121
TLD K+T + + G + L+ GK+ P LAE ++SEDG T LR G++ +
Sbjct: 52 TLDISKNTDTYSALAIGNSGSNLLRADAKGKLQPDLAEKVDVSEDGLTYTATLRDGLKWS 111
Query: 122 LGNPITAEDVKFVFDRLMNPETRSPMAPLV----LGPLKEVKVIDDYTVQLIYKEPYGPA 177
G+ +TAED + + R+++P+T S A L L +++ + + + + G
Sbjct: 112 DGSDLTAEDFVYSWQRMVDPKTASEYAYLATESHLKNAEDINSGKNPDLDSLGVKADGNK 171
Query: 178 LPFLATMP-----PLGIFS-----KEFYEKVGPVQFGQTPAG---TGPYYVVKW--VRGA 222
+ F T P L FS KE + K +G T +GPY V W G
Sbjct: 172 VIFTLTEPAPQFKSLLSFSNFVPQKESFVKDAGKDYGTTSEKQIYSGPYIVKDWNGTSGT 231
Query: 223 YIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVL-LDVPP 281
+ K YW KN ET+ + +K+P T V +K G + +
Sbjct: 232 FKLVKNKNYWD--------AKN---VKTETVNVQTVKKPDTAVQMYKQGKLDFANISGTS 280
Query: 282 EFYKDLANDPNVEMIPALEYVLHYIGFNCQK--YPFNDTRVRQAINMAINREEIIKYALE 339
Y AN + +++P LE YI +N N ++RQA+N+A +R+ I+ A++
Sbjct: 281 AIYN--ANKKHKDVVPVLEATTAYIVYNQTGAIEGLNSLKIRQALNLATDRKGIVSAAVD 338
Query: 340 GLAVPVHGPLVPSMNGYSE--KMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGIL---- 393
+ P + + S+ + E+ Y YD ++A +L E G + D +
Sbjct: 339 TGSKPATALVPTGLAKLSDGTDLTEHVAPGYKYDDKEAAKLFKE-GLAELGKDALTITIT 397
Query: 394 --EDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLH 451
D K V+ T E P + + + K ++ + +F V
Sbjct: 398 ADADAPAAKSAVDYIKETWETALPG----LTVEEKFVPFKQRLEDTKNQNFEVAV----- 448
Query: 452 QMYLFRYGLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTT--VDPEERQKYIEEA 509
L+ +F S F D D A +K TT ++ + + A
Sbjct: 449 --VLWGGDYPKGSTFYGLFKSGSAYNYGKFTNADYDAAYNKALTTDALNTDAAADDYKAA 506
Query: 510 EKILIDGAPMVPLY 523
EK L D A PLY
Sbjct: 507 EKALYDNALYNPLY 520
>emb|CAC12450.1| (AL445067) dipeptide ABC transport system, periplasmic
dipeptide-binding protein dppA [Thermoplasma
acidophilum]
Length = 609
Score = 87.0 bits (212), Expect = 5e-16
Identities = 102/464 (21%), Positives = 190/464 (39%), Gaps = 36/464 (7%)
Query: 3 QKIVKTLLVFALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDP 62
+K+V + V A+AA VA G + + + TS ++ +T
Sbjct: 9 KKLVAVITV-AIAALTVATAVYGPMQQSNLHINSFSATSNDNSSTLYLSPGPTPAFT--- 64
Query: 63 DTLDPQKSTWVDIT--TGLVFATLINMGT-NGKIIPGLAESWEISEDGKVITFHLRKGIR 119
D +P W+ GL++ L+ + T NG +IP LA + + + ++T +LR G+
Sbjct: 65 DNFNPFDGVWLTPAGIMGLIYEPLLQINTYNGTVIPWLATGYSWNSNATILTMYLRHGVE 124
Query: 120 DALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALP 179
+ G P A DV + F+ E ++ G +K + ++ Y V + P L
Sbjct: 125 FSNGLPFNASDVVYTFN-----EQKALFGE--WGVIKNITAVNPYEVNFTFTSPNTEYLF 177
Query: 180 FLATMPPLGIFSKEFYEKVGPV-QFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRP 238
++ + + + + F P+ + P GTGPY + + + YW++
Sbjct: 178 YIGS--NIIVPEQLFANSTDPLKEIVTNPIGTGPYVLQSFSPQKIVLTANPNYWQK---- 231
Query: 239 DPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYK-DLANDP--NVEM 295
G P I+T+ + L ++G + P ++ +P N
Sbjct: 232 -------GEPKIKTVVYVEYTSNSALTLAMQSGQVQWASVFAPNITTLFVSKNPQYNHYW 284
Query: 296 IPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVH--GPLVPSM 353
P + V + N YP N + RQAI++AINR I+ G P + G L +
Sbjct: 285 FPQGQPVT--LLLNDMVYPLNMSFFRQAISVAINRTAIMNIGEYGYEQPANAAGLLYQQL 342
Query: 354 NGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKF-IVEMWISTGEL 412
+ A + ++ AKQ+LA+ G++ G L NG + + G
Sbjct: 343 GELNSTNLALANKLATFNLTYAKQILADHGFIINSTTGRLTAPNGTPVPTLNLMSVAGYS 402
Query: 413 EAPKVAQIIQAQLAKIGIKVKIRTVEESSFTDLVSKGLHQMYLF 456
+ +I +L ++G+ V + T +++ + V+ G +QM L+
Sbjct: 403 DWDTDIALIANELNQLGLTVNLETPTQNTVSQDVTDGQYQMALY 446
>gb|AAF86623.1| (U87786) Orf7 [Streptomyces clavuligerus]
Length = 555
Score = 84.7 bits (206), Expect = 3e-15
Identities = 127/531 (23%), Positives = 213/531 (39%), Gaps = 92/531 (17%)
Query: 59 TRDPDTLDPQKS----TWVDITTGLVFATLINMGT-----NGKIIPGLAESW-EISEDGK 108
T D D+LDP + TW + L+ TL+ T +++P LAES E SEDG+
Sbjct: 36 TDDFDSLDPGNTYYAYTWNFLR--LIGRTLVTFDTAPGKAGQRLVPDLAESLGESSEDGR 93
Query: 109 VITFHLRKGIRDALGNPITAEDVKFV-----------------FDRLMNPETRSP-MAPL 150
V T+ LR+G+R G P+ + D+K F L+ E P P
Sbjct: 94 VWTYRLREGLRYEDGTPVVSADIKHAIARSNYGTDVLGAGPTYFRHLLGTEYGGPWREPD 153
Query: 151 VLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT 210
GP+ ++ D+ T+ +EP+ + LATMP + ++ ++ P T
Sbjct: 154 ADGPV-TLETPDERTLVFRLREPFA-GMDLLATMPSTTPVPR---DRDTGAEYRLRPVAT 208
Query: 211 GPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
GPY +V + RG + NP+W E P + I + K+P + A
Sbjct: 209 GPYRIVSYTRGELAVLEPNPHWDPETDPVRVQR------ASRIEVHLGKDPHEVDRMLLA 262
Query: 271 GNIHVLL---DVPPEFYKDLANDPNVEM---IPALEYVLHYIGFNCQKYPFNDTRVRQAI 324
G HV L V P + + +P + P + Y + + PF++ R+A+
Sbjct: 263 GEAHVDLAGFGVQPAAQERILAEPELRAHADNPLTGFTWIYC-LSSRIAPFDNVHCRRAV 321
Query: 325 NMAINR---EEIIKYALEG-LAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLA 380
A ++ +E A+ G +A + L P+++GY +YP PE L A
Sbjct: 322 QFATDKAAMQEAYGGAVGGDIATTL---LPPTLDGYKH------FDRYPVGPEGTGDLEA 372
Query: 381 EAGWVDRDG--DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVE 438
+ G DG F + L+ + A+ + A LA++GI+ ++
Sbjct: 373 ARAELKLAGMPDG---------FRTRIAARKDRLKEYRAAEALAAGLARVGIEAEVLDFP 423
Query: 439 ESSFTD--------LVSKGLHQMYLFRYG--LQDAQILLYMFHSKKGVKRMFFYR----- 483
+ D L G+ + +F +G D L + +K
Sbjct: 424 SGDYFDRYGGCPEYLREHGI-GIIMFGWGADFPDGYGFLQQITDGRAIKERGNQNMGELD 482
Query: 484 -KDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVP-LYARKVFLAYR 532
+++ LD+ DP R + +++ +D A +VP LY R L YR
Sbjct: 483 DPEINALLDEGAQCADPARRAEIWHRIDQLTMDHAVIVPYLYPRS--LLYR 531
>pir||S57672 hypothetical protein 5 - Streptomyces clavuligerus (fragment)
>gi|886943|emb|CAA58907.1| (X84101) ORF5; homology to
peptide transport proteins [Streptomyces clavuligerus]
>gi|1586125|prf||2203286E ORF 5 [Streptomyces
clavuligerus]
Length = 505
Score = 81.5 bits (198), Expect = 2e-14
Identities = 105/426 (24%), Positives = 175/426 (40%), Gaps = 72/426 (16%)
Query: 59 TRDPDTLDPQKS----TWVDITTGLVFATLINMGT-----NGKIIPGLAESW-EISEDGK 108
T D D+LDP + TW + L+ TL+ T +++P LAES E SEDG+
Sbjct: 36 TDDFDSLDPGNTYYAYTWNFLR--LIGRTLVTFDTAPGKAGQRLVPDLAESLGESSEDGR 93
Query: 109 VITFHLRKGIRDALGNPITAEDVKFV-----------------FDRLMNPETRSP-MAPL 150
V T+ LR+G+R G P+ + D+K F L+ E P P
Sbjct: 94 VWTYRLREGLRYEDGTPVVSADIKHAIARSNYGTDVLGAGPTYFRHLLGTEYGGPWREPD 153
Query: 151 VLGPLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGT 210
GP+ ++ D+ T+ +EP+ + LATMP + ++ ++ P T
Sbjct: 154 ADGPV-TLETPDERTLVFRLREPFA-GMDLLATMPSTTPVPR---DRDTGAEYRLRPVAT 208
Query: 211 GPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKA 270
GPY +V + RG + NP+W E P + I + K+P + A
Sbjct: 209 GPYRIVSYTRGELAVLEPNPHWDPETDPVRVQR------ASRIEVHLGKDPHEVDRMLLA 262
Query: 271 GNIHVLL---DVPPEFYKDLANDPNVEM---IPALEYVLHYIGFNCQKYPFNDTRVRQAI 324
G HV L V P + + +P + P + Y + + PF++ R+A+
Sbjct: 263 GEAHVDLAGFGVQPAAQERILAEPELRAHADNPLTGFTWIYC-LSSRIAPFDNVHCRRAV 321
Query: 325 NMAINR---EEIIKYALEG-LAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLA 380
A ++ +E A+ G +A + L P+++GY +YP PE L A
Sbjct: 322 QFATDKAAMQEAYGGAVGGDIATTL---LPPTLDGYKH------FDRYPVGPEGTGDLEA 372
Query: 381 EAGWVDRDG--DGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVE 438
+ G DG F + L+ + A+ + A LA++GI+ ++
Sbjct: 373 ARAELKLAGMPDG---------FRTRIAARKDRLKEYRAAEALAAGLARVGIEAEVLDFP 423
Query: 439 ESSFTD 444
+ D
Sbjct: 424 SGDYFD 429
>pir||B72107 peptide ABC transporter, periplasmic peptide-binding protein,
probable CP0571 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376467|gb|AAD18349.1|
(AE001606) Oligopeptide Binding Protein [Chlamydophila
pneumoniae CWL029] >gi|7189483|gb|AAF38390.1| (AE002215)
peptide ABC transporter, periplasmic peptide-binding
protein, putative [Chlamydophila pneumoniae AR39]
>gi|8978569|dbj|BAA98406.1| (AP002545) oligopeptide
binding protein [Chlamydophila pneumoniae J138]
Length = 527
Score = 80.0 bits (194), Expect = 7e-14
Identities = 106/436 (24%), Positives = 185/436 (42%), Gaps = 70/436 (16%)
Query: 38 TGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITTGL--VFATLINMGT-NGKII 94
+G SP++++ + V+ P +LDP K+ + T + ++ L+ + NG+I
Sbjct: 17 SGCSPSQSSKG----IFVVNMKEMPRSLDPGKTRLIADQTLMRHLYEGLVEEHSQNGEIK 72
Query: 95 PGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGP 154
P LAES+ ISEDG TF + K I + G+P+TA+D + ++ + S L P
Sbjct: 73 PALAESYTISEDGTRYTFKI-KNILWSNGDPLTAQDFVSSWKEILKEDASSVYLYAFL-P 130
Query: 155 LKEVKVIDDYT---------------VQLIYKEPYGPALPFLATMPPLGIFSKEFYEKVG 199
+K + I D T +++ + P L FL T+P F +
Sbjct: 131 IKNARAIFDDTESPENLGVRALDKRHLEIQLETPCAHFLHFL-TLPIF--FPVHETLRNY 187
Query: 200 PVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIK 259
F + P G + V +G + ++NP + + R + I + I
Sbjct: 188 STSFEEMPITCGAFRPVSLEKGLRLHLEKNPMYHNKSRVK----------LHKIIVQFIS 237
Query: 260 EPFTLVSEFKAGNIHVLLD---------VPPEFYKDLANDPNVEMIPALEYVLHYIGFNC 310
T FK H LD +PPE L D + +P ++ FN
Sbjct: 238 NANTAAILFK----HKKLDWQGPPWGEPIPPEISASLHQDDQLFSLPGASTT--WLLFNI 291
Query: 311 QKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPY 370
QK P+N+ ++R+A+++AI+++ + K +GLA P L P + Y E +Q
Sbjct: 292 QKKPWNNAKLRKALSLAIDKDMLTKVVYQGLAEPTDHILHPRL--YPGTYPERKRQNERI 349
Query: 371 DPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVE---MWISTGELEAPKVAQIIQAQLAK 427
+A+QL EA L++ + +E + ST ++ Q+++ Q K
Sbjct: 350 --LEAQQLFEEA----------LDELQMTREDLEKETLTFSTFSFSYGRICQMLREQWKK 397
Query: 428 IGIKVKIRTVEESSFT 443
+ +K I V + FT
Sbjct: 398 V-LKFTIPIVGQEFFT 412
>pir||D72107 oligopeptide binding protein - Chlamydophila pneumoniae (strain
CWL029) >gi|4376469|gb|AAD18351.1| (AE001606)
Oligopeptide Binding Protein [Chlamydophila pneumoniae
CWL029] >gi|8978571|dbj|BAA98408.1| (AP002545)
oligopeptide binding protein [Chlamydophila pneumoniae
J138]
Length = 526
Score = 77.3 bits (187), Expect = 4e-13
Identities = 123/514 (23%), Positives = 215/514 (40%), Gaps = 82/514 (15%)
Query: 52 KVLVIGYTRDPDTLDPQKSTWV-DITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVI 110
K LVI + D LDP+ + D + + T+ I LAES+ +S+D KV
Sbjct: 35 KHLVIAMSHDLADLDPRNAYLSRDASLAKALYEGLTRETDQGIALALAESYTLSKDHKVY 94
Query: 111 TFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVI--------- 161
TF LR + G P+TA D + +L E SP +LG +K I
Sbjct: 95 TFKLRPSVWSD-GTPLTAYDFEKSIKQLYFEEF-SPSIHTLLGVIKNSSAIHNAQKSLET 152
Query: 162 ------DDYTVQLIYKEPYGPALPFLATMPPLGIFS------KEFYEKVGPVQFGQTPAG 209
DD T+ + ++P+ P+ T+ +FS +E Y+K P T
Sbjct: 153 LGIQAKDDLTLVITLEQPF----PYFLTLIARPVFSPVHHTLRESYKKGTP---PSTYIS 205
Query: 210 TGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFK 269
GP+ + K Y+ ++NP+ Y ++K ++ + +II + T FK
Sbjct: 206 NGPFVLKKHEHQNYLILEKNPH----YYDHESVK------LDRVTLKIIPDASTATKLFK 255
Query: 270 AGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHY-------IGFNCQKYPFNDTRVRQ 322
+ +I + + ++N+ + + + E +L Y + +N QK + +R+
Sbjct: 256 SKSIDW---IGSPWSAPISNED--QKVLSQEKILTYSVSSTTLLIYNLQKPLIQNKALRK 310
Query: 323 AINMAINREEIIKYALEGL-AVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAE 381
AI AI+R+ I++ G AV + P + +N E E + K ++AK+ L+E
Sbjct: 311 AIAHAIDRKSILRLVPSGQEAVTLVPPNLSQLNLQKEISTEERQTKARAYFQEAKETLSE 370
Query: 382 AGWVDRDGDGILEDKNGNKFIVEMWI--STGELEAPKVAQIIQAQLA-KIGIKVKIRTVE 438
K + E+ I + +AQ IQ QL +G+K+KI+ +E
Sbjct: 371 ------------------KELAELSILYPIDSSNSSIIAQEIQRQLKDTLGLKIKIQGME 412
Query: 439 ESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMF--FYRKDLDEALDKMGTT 496
F +G ++ G + F S G R + D ++ L+K+
Sbjct: 413 YHCFLKKRRQG--DFFIATGGWIAEYVSPVAFLSILGNPRDLTQWRNSDYEKTLEKLYL- 469
Query: 497 VDPEERQKYIEEAEKILIDGAPMVPLYARKVFLA 530
P ++ ++ AE I+ + P++PLY K A
Sbjct: 470 --PHAYKENLKRAEMIIEEETPIIPLYHGKYIYA 501
>pir||A81564 peptide ABC transporter, periplasmic peptide-binding protein CP0569
[imported] - Chlamydophila pneumoniae (strain AR39)
>gi|7189481|gb|AAF38388.1| (AE002215) peptide ABC
transporter, periplasmic peptide-binding protein
[Chlamydophila pneumoniae AR39]
Length = 528
Score = 77.3 bits (187), Expect = 4e-13
Identities = 123/514 (23%), Positives = 215/514 (40%), Gaps = 82/514 (15%)
Query: 52 KVLVIGYTRDPDTLDPQKSTWV-DITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVI 110
K LVI + D LDP+ + D + + T+ I LAES+ +S+D KV
Sbjct: 37 KHLVIAMSHDLADLDPRNAYLSRDASLAKALYEGLTRETDQGIALALAESYTLSKDHKVY 96
Query: 111 TFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVI--------- 161
TF LR + G P+TA D + +L E SP +LG +K I
Sbjct: 97 TFKLRPSVWSD-GTPLTAYDFEKSIKQLYFEEF-SPSIHTLLGVIKNSSAIHNAQKSLET 154
Query: 162 ------DDYTVQLIYKEPYGPALPFLATMPPLGIFS------KEFYEKVGPVQFGQTPAG 209
DD T+ + ++P+ P+ T+ +FS +E Y+K P T
Sbjct: 155 LGIQAKDDLTLVITLEQPF----PYFLTLIARPVFSPVHHTLRESYKKGTP---PSTYIS 207
Query: 210 TGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFK 269
GP+ + K Y+ ++NP+ Y ++K ++ + +II + T FK
Sbjct: 208 NGPFVLKKHEHQNYLILEKNPH----YYDHESVK------LDRVTLKIIPDASTATKLFK 257
Query: 270 AGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHY-------IGFNCQKYPFNDTRVRQ 322
+ +I + + ++N+ + + + E +L Y + +N QK + +R+
Sbjct: 258 SKSIDW---IGSPWSAPISNED--QKVLSQEKILTYSVSSTTLLIYNLQKPLIQNKALRK 312
Query: 323 AINMAINREEIIKYALEGL-AVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAE 381
AI AI+R+ I++ G AV + P + +N E E + K ++AK+ L+E
Sbjct: 313 AIAHAIDRKSILRLVPSGQEAVTLVPPNLSQLNLQKEISTEERQTKARAYFQEAKETLSE 372
Query: 382 AGWVDRDGDGILEDKNGNKFIVEMWI--STGELEAPKVAQIIQAQLA-KIGIKVKIRTVE 438
K + E+ I + +AQ IQ QL +G+K+KI+ +E
Sbjct: 373 ------------------KELAELSILYPIDSSNSSIIAQEIQRQLKDTLGLKIKIQGME 414
Query: 439 ESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMF--FYRKDLDEALDKMGTT 496
F +G ++ G + F S G R + D ++ L+K+
Sbjct: 415 YHCFLKKRRQG--DFFIATGGWIAEYVSPVAFLSILGNPRDLTQWRNSDYEKTLEKLYL- 471
Query: 497 VDPEERQKYIEEAEKILIDGAPMVPLYARKVFLA 530
P ++ ++ AE I+ + P++PLY K A
Sbjct: 472 --PHAYKENLKRAEMIIEEETPIIPLYHGKYIYA 503
>dbj|BAA06007.1| (D28859) TraC [Enterococcus faecalis]
Length = 545
Score = 76.5 bits (185), Expect = 7e-13
Identities = 122/558 (21%), Positives = 231/558 (40%), Gaps = 75/558 (13%)
Query: 18 LVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITT 77
LV A C G T T+ E A L V +LDP +T VD T+
Sbjct: 17 LVLASC---GINTATKDSQDVTEKKVEQVATLTAGTPV-------QSLDP--ATAVDQTS 64
Query: 78 GLVFAT----LINMGTNGKIIPGLAESW-EISEDGKVITFHLRKGIRDALGNPITAEDVK 132
+ A L + + P +A ++S +GK T +R G + + G ITA D
Sbjct: 65 ITLLANVMEGLYRLDQKNQPQPAIAAGQPKVSNNGKTYTIVIRDGAKWSDGTQITASDFV 124
Query: 133 FVFDRLMNPETRSPMAPL--VLGPLKE------------VKVIDDYTVQLIYKEP---YG 175
+ R+++P+T SP L + KE VK I + T+++ EP +
Sbjct: 125 AAWQRVVDPKTASPNVELFSAIKNAKEIASGKQVKDTLAVKSIGEKTLEIELVEPTPYFT 184
Query: 176 PALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWV--RGAYIEYKRNPYWK 233
L A P KE+ + G + G +++ V + K YW
Sbjct: 185 DLLSLTAYYPVQQKAIKEYGKDYGTSKKAIVTNGAFNLTILEGVGTSDKWTISKNKEYWD 244
Query: 234 REYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVP--PEFYKDLANDP 291
++ ++ I F+++KE T ++ + G + D P E+ K D
Sbjct: 245 KK-----------DVSMDKINFQVVKEINTGINLYNDGQLD---DAPLAGEYAKQYKKDK 290
Query: 292 NVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVP 351
+ + + + VR+AI+ I+R+ +++ L+ ++P G +VP
Sbjct: 291 EYSTTLMANTMFLEMNQTGENKLLKNKNVRKAISYPIDRDSLVEKLLDNGSIPSVG-VVP 349
Query: 352 SMNGYSEK-MEEYAKQK-YPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIST 409
Y+ K +++A +K Y+ ++A+ W +D K +++++
Sbjct: 350 EKMAYNPKTKKDFANEKLVEYNKKQARTY-----WETVKS----KDSVSEKLELDIFVGD 400
Query: 410 GELEAPKVAQIIQAQLAK--IGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILL 467
GE E K + +Q QL + G+KV I V + F + ++K + L + A +
Sbjct: 401 GEFE-KKAGEFLQGQLEENLEGLKVNITPVPANVFMERLTKKDFAISLSGWQADYADPIS 459
Query: 468 YM--FHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYAR 525
++ F + + + K+ DE + + +R + +++AEKI+ID A ++P++
Sbjct: 460 FLANFETNSPLNHGGYSNKNYDELIKDTSS-----KRWQELKKAEKIVIDDAGVIPVFQV 514
Query: 526 KVFLAYRKDVVEGIVINP 543
+ +K+ + +VI+P
Sbjct: 515 GI-ARLQKNTIRNLVIHP 531
>dbj|BAA11195.1| (D78016) TRAC [Enterococcus faecalis]
Length = 545
Score = 75.3 bits (182), Expect = 2e-12
Identities = 122/558 (21%), Positives = 230/558 (40%), Gaps = 75/558 (13%)
Query: 18 LVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTWVDITT 77
LV A C G T T+ E A L V +LDP +T VD T+
Sbjct: 17 LVLASC---GINTATKDSQDVTEKKVEQVATLTAGTPV-------QSLDP--ATAVDQTS 64
Query: 78 GLVFAT----LINMGTNGKIIPGLAESW-EISEDGKVITFHLRKGIRDALGNPITAEDVK 132
+ A L + + P +A ++S +GK T +R G + + G ITA D
Sbjct: 65 ITLLANVMEGLYRLDEKNQPQPAIAAGQPKVSNNGKTYTIVIRDGAKWSDGTQITASDFV 124
Query: 133 FVFDRLMNPETRSPMAPL--VLGPLKE------------VKVIDDYTVQLIYKEP---YG 175
+ R+++P+T SP L + KE VK I + T+++ EP +
Sbjct: 125 AAWQRVVDPKTASPNVELFSAIKNAKEIASGKQVKDTLAVKSIGEKTLEIELVEPTPYFT 184
Query: 176 PALPFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWV--RGAYIEYKRNPYWK 233
L A P KE+ + G + G +++ V + K YW
Sbjct: 185 DLLSLTAYYPVQQKAIKEYGKDYGTSKKAIVTNGAFNLTILEGVGTSDKWTISKNKEYWD 244
Query: 234 REYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVP--PEFYKDLANDP 291
++ ++ I F+++KE T ++ + G + D P E+ K D
Sbjct: 245 KK-----------DVSMDKINFQVVKEINTGINLYNDGQLD---DAPLAGEYAKQYKKDK 290
Query: 292 NVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVP 351
+ + + + VR+AI+ I+R+ +++ L+ ++P G +VP
Sbjct: 291 EYSTTLMANTMFLEMNQTGENKLLKNKNVRKAISYPIDRDSLVEKLLDNGSIPSVG-VVP 349
Query: 352 SMNGYSEK-MEEYAKQK-YPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIST 409
Y+ K +++A +K Y+ ++A+ W +D K +++ +
Sbjct: 350 EKMAYNPKTKKDFANEKLVEYNKKQARTY-----WETVKS----KDSVSEKLELDILVGD 400
Query: 410 GELEAPKVAQIIQAQLAK--IGIKVKIRTVEESSFTDLVSKGLHQMYLFRYGLQDAQILL 467
GE E K + +Q QL + G+KV I V + F + ++K + L + A +
Sbjct: 401 GEFE-KKAGEFLQGQLEENLEGLKVNITPVPANVFMERLTKKDFAISLSGWQADYADPIS 459
Query: 468 YM--FHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYAR 525
++ F + + + K+ DE + + +R + +++AEKI+ID A ++P++
Sbjct: 460 FLANFETNSPLNHGGYSNKNYDELIKDTSS-----KRWQELKKAEKIVIDDAGVIPVFQV 514
Query: 526 KVFLAYRKDVVEGIVINP 543
+ +K+ + +VI+P
Sbjct: 515 GI-ARLQKNTIRNLVIHP 531
>gb|AAF22874.1| (AF065159) putative ABC transporter [Bradyrhizobium japonicum]
Length = 516
Score = 75.3 bits (182), Expect = 2e-12
Identities = 88/393 (22%), Positives = 160/393 (40%), Gaps = 41/393 (10%)
Query: 64 TLDPQKST-WVDITTG-LVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDA 121
TLDP ST ++ T G +VF TL + G+I P + + W++S DG +F LR G++
Sbjct: 37 TLDPHFSTAYISRTFGYMVFDTLFAKDSKGEIKPQMVQDWKVSPDGLTYSFTLRDGLKWH 96
Query: 122 LGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIYKEPYGPALPFL 181
G P+TA + R TRS + + ++ D T L KEP G + L
Sbjct: 97 DGQPVTAAHSVRIVRRW---GTRSALGRRIFAITASLEPTDAKTFVLTLKEPSGLVIDAL 153
Query: 182 AT-MPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDP 240
+ P+ E K Q G+GP+ K + RP+P
Sbjct: 154 GNPVSPVAFMMPERIAKTPGDQRITEIVGSGPFVYSKADHRTGDRMILKKFADYVPRPEP 213
Query: 241 A--LKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPA 298
A L ++++ R+I + L S +AG + + P + L + V++
Sbjct: 214 ADFLAGGKRVNVDSLEIRVIPDERPLASALQAGEVDFMQYAPFDLLPTLEKNSRVKL--- 270
Query: 299 LEYVLHYIG---------FNCQKYPFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPL 349
L++ G N PF+D +R+ + +++ E+ L+ L +
Sbjct: 271 ----LNFTGGNMFAGAYRLNAASKPFDDPAIRRVLWKLVDQREV----LDALGLDAK--- 319
Query: 350 VPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWIST 409
Y+ + YD + + A+ ++ + K + ++ M
Sbjct: 320 ------YATPCATFFTCGTTYDSKAGTEAAAKPS-IEAARAALKATKYAGEPVIVM--EA 370
Query: 410 GELEAPKV-AQIIQAQLAKIGIKVKIRTVEESS 441
+LEAP+V AQ++ +L + G V ++ ++ +S
Sbjct: 371 NDLEAPRVSAQVLAERLKQAGFNVDLQVMDWAS 403
>gb|AAG09257.1| (AF176664) EppA precursor [EDTA-degrading bacterium BNC1]
Length = 593
Score = 74.5 bits (180), Expect = 3e-12
Identities = 106/493 (21%), Positives = 203/493 (40%), Gaps = 56/493 (11%)
Query: 92 KIIPGLAESWEI-SEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPL 150
K+ L ES E+ S D + + + +R+ + G PIT +D + + + +
Sbjct: 94 KMNTDLLESAELTSTDPQTVVYRIREDAVWSDGVPITGDDFIYFWKTQNRRDCPECLINA 153
Query: 151 VLGPLKEVKVIDDYTVQLI---YKEPYGPALPFLATMPPLGIFSK--EFYEKVGPVQFGQ 205
G + D T +++ + EP+ + P + K + E +
Sbjct: 154 SYGHDFIETLEQDETGKVVTATFSEPFLGWQGLFMFLYPAHLAEKHGDIAESYNNFLSNE 213
Query: 206 TPAGTG-PYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTL 264
PA +G PY V + G + NP W E P Y++ ++FRII +
Sbjct: 214 VPAWSGGPYMVESFDPGQLVTLVPNPKWYGEKGP----------YLDKLKFRIITDSTQQ 263
Query: 265 VSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYV-----------LHYIGFNCQKY 313
++ + G + V+ Y A VE L+Y+ +++G N +
Sbjct: 264 LTALENGEVDVI-------YPQGATQDMVEQAAGLDYLGIDFQMNPSANWYFMGLNSKAG 316
Query: 314 PFNDTRVRQAINMAINREEIIKYALEGLAV--PVHGPLV--PSMNGYSEKMEEYAKQKYP 369
P +D +R+A+ AI+ ++ + P G ++ P+ GY+++ A+
Sbjct: 317 PMSDIALRKAVLTAIDAGDLKAKTADPYLRNWPHMGSVMFLPNQAGYADRRG--ARGYGT 374
Query: 370 YDPEKAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIG 429
D EKAK +L+EAG+ G +L+ + + G A +A++I +A +G
Sbjct: 375 GDVEKAKGILSEAGY-KLSGGSLLDPSGKPVSTLRLSFPPGYPAANDMARLITGYIAPLG 433
Query: 430 IKVKIRTVEESSFTDLVSKG--LHQMYLFRY---GLQDAQILLYMFHSKKGVKRMFFYRK 484
+K + T ++ L+S LH Y + ++ QI L + ++ +F
Sbjct: 434 LKTDLLTGPNATADYLLSGNFDLHLNYFSQQVFPAVKAGQIFL------RDTRQNYFGFN 487
Query: 485 D--LDEALDKMGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVFLAYRKDVVEGIVIN 542
D ++E + K EE + EA+++ +D A + P+Y L Y K+ + + N
Sbjct: 488 DPKIEEIIGKAAAASSIEESAAILSEADELAMDYAALFPIYQLPTALIY-KEAILNLRDN 546
Query: 543 PYTLDVYLDDAKL 555
P L + A++
Sbjct: 547 PNQLGPAYNTARM 559
>pir||A72107 peptide ABC transporter, periplasmic peptide-binding protein,
probable CP0572 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376466|gb|AAD18348.1|
(AE001606) Oligopeptide Binding Protein [Chlamydophila
pneumoniae CWL029] >gi|7189485|gb|AAF38391.1| (AE002216)
peptide ABC transporter, periplasmic peptide-binding
protein, putative [Chlamydophila pneumoniae AR39]
>gi|8978568|dbj|BAA98405.1| (AP002545) oligopeptide
binding protein [Chlamydophila pneumoniae J138]
Length = 532
Score = 73.4 bits (177), Expect = 6e-12
Identities = 101/491 (20%), Positives = 192/491 (38%), Gaps = 46/491 (9%)
Query: 54 LVIGYTRDPDTLDPQKS---TWVDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVI 110
L I +P +LDP++ + + + + + +G I P LAE + +S DG
Sbjct: 36 LAINIRDEPRSLDPRQVRLLSEISLVKHIYEGLVQENNLSGNIEPALAEDYSLSSDGLTY 95
Query: 111 TFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTVQLIY 170
TF L+ G+P+TAED + ++ E S + L P+K V+ I + + + +
Sbjct: 96 TFKLKSAFWSN-GDPLTAEDFIESWKQVATQEV-SGIYAFALNPIKNVRKIQEGHLSIDH 153
Query: 171 KEPYGPALPFLATM--PPLGIFSK--------EFYEKVGPVQFGQTPAGTGPYYVVKWVR 220
+ P L P F K ++ +Q P +G +Y +
Sbjct: 154 FGVHSPNESTLVVTLESPTSHFLKLLALPVFFPVHKSQRTLQSKSLPIASGAFYPKNIKQ 213
Query: 221 GAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRIIKEPFTLVSEFKAGNIHVLLD-- 278
+I+ +NP++ + + + +TI I + T F G ++
Sbjct: 214 KQWIKLSKNPHYYNQSQVET----------KTITIHFIPDANTAAKLFNQGKLNWQGPPW 263
Query: 279 ---VPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINMAINREEIIK 335
+P E +L + ++ ++ FN K+P N+ ++R+A+ A+++E ++
Sbjct: 264 GERIPQETLSNLQSKGHLHSFDVAG--TSWLTFNINKFPLNNMKLREALASALDKEALVS 321
Query: 336 YALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAEAGWVDRDGDGILED 395
G A L +++ Y E ++ Q+ Y + K+ L E +D LE
Sbjct: 322 TIFLGRAKTADHLLPTNIHSYPEHQKQEMAQRQAYAKKLFKEALEELQITAKD----LEH 377
Query: 396 KNGNKFIVEMWISTGELEAPKVAQIIQAQLAK-IGIKVKIRTVEESSFTDLVSKGLHQMY 454
N I + S L + Q+I+ Q + +G + I E + +S G +
Sbjct: 378 LN---LIFPVSSSASSL----LVQLIREQWKESLGFAIPIVGKEFALLQADLSSGNFSLA 430
Query: 455 LFRY--GLQDAQILLYMFHSKKGVKRMFFYRKDLDEALDKMGTTVDPEERQKYIEEAEKI 512
+ D L +F GV KD E L + D ++R + + +A
Sbjct: 431 TGGWFADFADPMAFLTIFAYPSGVPPYAINHKDFLEILQNIEQEQDHQKRSELVSQASLY 490
Query: 513 LIDGAPMVPLY 523
L + P+Y
Sbjct: 491 LETFHIIEPIY 501
>emb|CAB61245.1| (AJ238087) lipoprotein [Lactococcus lactis]
Length = 444
Score = 72.2 bits (174), Expect = 1e-11
Identities = 91/393 (23%), Positives = 165/393 (41%), Gaps = 52/393 (13%)
Query: 13 ALAAALVAAGCIGGGTPTQTQTQTGTGTSPTETTAALKHKVLVIGYTRDPDTLDPQKSTW 72
+L+AAL+ C + ++ TQ + + +L + DT
Sbjct: 13 SLSAALLLTACGNSSSKSEQPTQ--------KANYSFASNILTL------DTSMAADVNS 58
Query: 73 VDITTGLVFATLINMGTNGKIIPGLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVK 132
+D+ V A L+ + +++ LA+S ++S+DGK LR G++ + G +TA D
Sbjct: 59 IDVLLN-VDAGLVRWNPDAQVVNDLAKSIDVSKDGKTYNVTLRDGLKWSNGAKLTAADFV 117
Query: 133 FVFDRLMNPETRSPMAPLVLGPLKEV-------KVIDDYTVQ-------LIYKEPYGPAL 178
+ + R ++P+T S A L P+ K +D ++ +I P
Sbjct: 118 YGWQRTVDPKTGSQYA-YALTPVANASEIMAGKKTVDSLGIKAESDTKLVITLATPTPYF 176
Query: 179 PFLATMPPLGIFSKEFYEKVGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRP 238
L T+P ++ F +K+G ++G T + T Y GA+ K W
Sbjct: 177 NKLLTLPAYYPVNEAFVKKMGN-KYG-TSSDTSLY------NGAFKFVKGKNNWTGSNET 228
Query: 239 DPALKNPGPPYIETIR-----FRIIKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNV 293
+KN + ++ ++I+ P T V+ FK+G + V PE AN N
Sbjct: 229 FSIVKNDQFYDAKNVKLSGATYQIVNNPNTAVNLFKSGKLDVANLATPELVS--ANKKNK 286
Query: 294 EMIPALEYVLHYIGFN-CQKYP-FNDTRVRQAINMAINREEIIKYALEGLAVP---VHGP 348
+ + + +N K P ++ ++RQA+N+A NR+ +++ ++
Sbjct: 287 DYKALTSPRIDVLEYNQSGKVPELSNLKIRQALNLATNRKNLLEIXAPSFSITNTVTPKK 346
Query: 349 LVPSMNGYSEKMEEYAKQKYPYDPEKAKQLLAE 381
L + NG + YA Q Y YD +KA +L E
Sbjct: 347 LDQAPNG--QDFATYAAQPYTYDAKKAAELFKE 377
>emb|CAC17494.1| (AL450432) putative secreted solute-binding protein [Streptomyces
coelicolor]
Length = 528
Score = 72.2 bits (174), Expect = 1e-11
Identities = 107/462 (23%), Positives = 187/462 (40%), Gaps = 76/462 (16%)
Query: 88 GTNGKIIP--------GLAESWEISEDGKVITFHLRKGIRDALGNPITAEDVKFVFDRLM 139
GT G + P G+ + +I++D T H+R G+R G+ +T+ D+ L
Sbjct: 86 GTLGNLDPSGPDGVRYGVLKGIDIADDLSAYTLHVRPGVRFTDGSRLTSADILHSLSALA 145
Query: 140 NPETRSPMAPLVLG--PLKEVKVIDDYTVQLIYKEPYGPALPFLATMPPLGIFSKEFYEK 197
++ P+ L L K D V L P L G F K
Sbjct: 146 -ARSKLPVYRLAAANFDLARAKADGDLKVVLPTLRPIADGRLILCQ----GNF---LVVK 197
Query: 198 VGPVQFGQTPAGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRI 257
G F ++ GP+ + + G ++R + Y P+++ + R
Sbjct: 198 DGTKVFRESMPSCGPFRLTGFTAGQGSAFER---YDDHY--------GHVPHLDGLELRS 246
Query: 258 IKEPFTLVSEFKAGNIHVLLDVPPEFYKDLANDPNVEMIPALEYVLHYIGF--NCQKYPF 315
I + G + D+ P + LA+D VE+ P L + F N PF
Sbjct: 247 IADSTARAGALTGGAVDFAHDLSPVTARTLADDAKVELAPTKSPYLVGLSFQLNMSAEPF 306
Query: 316 NDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMN--GYSEKMEEYAKQKYPYDPE 373
+D RVR+A +A++RE ++K G A G +PS+ Y++ + + A +DP
Sbjct: 307 DDPRVREAFKLAVDREAMVKTVFYGNA--EIGNDLPSLGFPDYADGIPQRA-----HDPG 359
Query: 374 KAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAP---KVAQIIQAQLAKIGI 430
+A+ LL EAG DG V++ ++TG E P ++A + L KIG+
Sbjct: 360 RARALLEEAG-----ADG-----------VKVQLTTGP-ETPGMVEMATLFVEDLKKIGV 402
Query: 431 KVKIRTV-------EESSFTDLVSKGLHQMYLFRYGLQDAQILLYMFHSKKGVKRMFFYR 483
+ +R + + +++ L G +QM + + Y ++ G F ++
Sbjct: 403 RASVRELPPGQLYADFPAYSALPLAGSYQMPV-------PALSTYQMNTAGGSPSAFGWK 455
Query: 484 KDLDEALDKMGTTV-DPEERQKYIEEAEKILID-GAPMVPLY 523
K +AL DPE ++ A++ D G +VP++
Sbjct: 456 KSETDALVAQARAERDPERARELGTRAQRTRWDEGNQVVPVF 497
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228889630
Number of Sequences: 2977
Number of extensions: 10789467
Number of successful extensions: 27654
Number of sequences better than 1.0e-10: 144
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 27103
Number of HSP's gapped (non-prelim): 196
length of query: 556
length of database: 189,106,746
effective HSP length: 55
effective length of query: 501
effective length of database: 156,189,961
effective search space: 78251170461
effective search space used: 78251170461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)