BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0092 (dppB-1) DE:dipeptide ABC transporter,
dipeptide-binding protein
(310 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75202 dipeptide abc transporter, dipeptide-binding protein... 622 e-177
sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 291 1e-77
pir||G71951 dipeptide transport system permease protein - Helico... 270 1e-71
dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas... 267 1e-70
pir||C64557 dipeptide ABC transporter, permease protein - Helico... 267 1e-70
pir||C83082 probable permease of ABC transporter PA4503 [importe... 259 4e-68
dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ... 258 5e-68
emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter... 258 7e-68
sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 256 3e-67
dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas... 254 1e-66
dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O... 254 1e-66
sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 251 7e-66
gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T... 244 9e-64
pir||F75454 peptide ABC transporter, permease protein - Deinococ... 244 9e-64
pir||C71130 probable oligopeptide transport permease protein APP... 244 9e-64
sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 244 9e-64
sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 241 8e-63
pir||A72289 oligopeptide ABC transporter, permease protein - The... 241 8e-63
gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829... 238 7e-62
dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B... 237 1e-61
gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp... 235 7e-61
pir||T03433 probable transport protein accD - Agrobacterium tume... 227 1e-58
gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T... 227 2e-58
pir||B72367 oligopeptide ABC transporter, permease protein - The... 226 2e-58
gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] 226 4e-58
sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 225 5e-58
sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 224 1e-57
dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba... 221 7e-57
pir||S47696 nickel transport system permease protein nikB - Esch... 219 3e-56
sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 217 1e-55
sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 213 2e-54
pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil... 211 8e-54
gi|11499357 dipeptide ABC transporter, permease protein (dppB) [... 209 3e-53
sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 208 5e-53
sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 206 4e-52
pir||B82356 peptide ABC transporter, permease protein VC0172 [im... 205 6e-52
pir||C82242 oligopeptide ABC transporter, permease protein VC109... 205 8e-52
sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 204 1e-51
pir||F72451 probable peptide transport system permease protein A... 203 2e-51
pir||C70141 oligopeptide ABC transporter, permease protein (oppB... 203 3e-51
dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas... 203 3e-51
sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 202 4e-51
gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St... 200 2e-50
dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ... 199 3e-50
gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-... 199 4e-50
gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [... 197 1e-49
pir||D71014 probable dipeptide transport system permease protein... 197 2e-49
pir||S77118 oligopeptide transport system permease protein appB ... 197 2e-49
gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge... 197 2e-49
emb|CAC11408.1| (AL445063) dipeptide transport system permease p... 196 3e-49
pir||E72300 oligopeptide ABC transporter, permease protein - The... 196 4e-49
gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] 196 4e-49
gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb... 194 9e-49
emb|CAC05748.1| (AL391751) putative peptide transport system int... 194 1e-48
pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29... 194 2e-48
pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC... 193 2e-48
dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas... 192 5e-48
pir||B75118 dipeptide abc transporter, permease protein (dppb) P... 192 6e-48
pir||B70789 probable peptidetransport system permease - Mycobact... 192 6e-48
pir||A75142 oligopeptide transport system permease protein appb ... 189 3e-47
pir||E72424 oligopeptide ABC transporter, permease protein - The... 188 7e-47
pir||F72215 oligopeptide ABC transporter, permease protein - The... 188 7e-47
pir||B71163 probable oligopeptide transport system permease prot... 187 2e-46
sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 187 2e-46
pir||H72428 oligopeptide ABC transporter, permease protein - The... 185 6e-46
pir||H75068 dipeptide abc transporter, permease protein (dppb) P... 185 6e-46
gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] 184 1e-45
pir||F72371 oligopeptide ABC transporter, permease protein - The... 184 1e-45
gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7... 183 3e-45
pir||T34758 oligopeptide transport system integral membrane prot... 181 9e-45
gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] 181 1e-44
pir||F72720 probable oligopeptide transport system permease prot... 179 3e-44
pir||B72617 probable dipeptide transport system permease protein... 179 3e-44
emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan... 178 6e-44
sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 176 3e-43
pir||F81699 peptide ABC transporter, permease protein TC0472 [im... 175 5e-43
pir||F75529 probable peptide ABC transporter, permease protein -... 173 3e-42
sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 173 3e-42
pir||D75573 peptide ABC transporter, permease protein - Deinococ... 173 3e-42
pir||C71545 probable oligopeptide permease - Chlamydia trachomat... 172 4e-42
pir||T35939 probable transport permease protein - Streptomyces c... 171 1e-41
pir||E72107 peptide ABC transporter, permease protein CP0568 [im... 170 2e-41
pir||F82377 ABC transporter, permease protein VCA1099 [imported]... 170 2e-41
pir||D72282 oligopeptide ABC transporter, permease protein - The... 169 4e-41
gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb... 168 1e-40
emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] 166 4e-40
gb|AAC18097.1| (AF058302) membrane protein of putative ABC trans... 166 4e-40
pir||A75027 oligopeptide transport permease protein appb PAB1194... 166 4e-40
gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol... 164 1e-39
pir||A71212 probable oligopeptide transport system permease prot... 164 1e-39
pir||B75381 peptide ABC transporter, permease protein - Deinococ... 164 1e-39
sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 161 1e-38
gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB... 160 2e-38
pir||G82301 peptide ABC transporter, permease protein VC0619 [im... 159 5e-38
gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1] 158 7e-38
sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 157 2e-37
pir||E81253 probable peptide ABC-transport system permease prote... 155 6e-37
pir||C72284 oligopeptide ABC transporter, permease protein - The... 155 8e-37
pir||H72420 oligopeptide ABC transporter, permease protein - The... 152 5e-36
emb|CAA10910.1| (AJ222649) sapB [Erwinia chrysanthemi] 150 3e-35
gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; Dp... 149 4e-35
pir||B72393 oligopeptide ABC transporter, permease protein - The... 149 5e-35
gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] 148 6e-35
gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel... 143 2e-33
emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote... 141 8e-33
pir||A72537 probable oligopeptide transport permease protein APE... 140 2e-32
emb|CAC17495.1| (AL450432) putative metal transport integral mem... 140 2e-32
sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 138 7e-32
pir||T45279 oligopeptide transport membrane protein bldKC [impor... 138 9e-32
pir||E82442 probable peptide ABC transporter, permease protein V... 135 6e-31
pir||C82876 oligopeptide transport system permease protein UU562... 133 3e-30
dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus] 132 5e-30
emb|CAA20250.1| (AL031231) putative peptide transport system int... 129 3e-29
emb|CAC12449.1| (AL445067) dipeptide transport system, permease ... 129 4e-29
sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 127 2e-28
gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob... 127 2e-28
pir||D72059 peptide ABC transporter, permease protein, probable ... 120 2e-26
dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ... 120 2e-26
sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 115 6e-25
emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo... 115 1e-24
gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB... 114 1e-24
pir||C64676 oligopeptide ABC transporter, permease protein - Hel... 114 1e-24
pir||C71841 probable peptide ABC transporter, ATP-binding protei... 113 3e-24
pir||G81668 peptide ABC transporter, permease protein, probable ... 112 5e-24
pir||D71510 probable oligopeptide permease - Chlamydia trachomat... 111 1e-23
emb|CAA68074.1| (X99740) oligopeptide transport system permease ... 111 1e-23
sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 104 2e-21
gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus sol... 101 1e-20
pir||B70193 oligopeptide ABC transporter, permease protein (oppB... 80 5e-14
>pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 -
Pyrococcus abyssi (strain Orsay)
>gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 310
Score = 622 bits (1586), Expect = e-177
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MKKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDR 60
MKKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDR
Sbjct: 1 MKKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDR 60
Query: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML
Sbjct: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT 180
AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT
Sbjct: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT 180
Query: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI
Sbjct: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
Query: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII
Sbjct: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
Query: 301 DPRVRIMGGE 310
DPRVRIMGGE
Sbjct: 301 DPRVRIMGGE 310
>sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC
>gi|7442416|pir||G64820 probable oligopeptide transport
protein b0831 - Escherichia coli
>gi|1787053|gb|AAC73918.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical
protein o314 [Escherichia coli]
>gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical
protein o314 [Escherichia coli]
Length = 306
Score = 291 bits (736), Expect = 1e-77
Identities = 145/301 (48%), Positives = 207/301 (68%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
++IK++L L+ +FIVSV F +H++PGDPAR + G A + + R QLGLD+PLY
Sbjct: 4 YVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYH 63
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
Q+ ++S ++GDFG S+V PV++ IA R TL LT+T+ + A +FG+ G++AAV+
Sbjct: 64 QFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVW 123
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLP 184
++ D + MT+AV +S P F LG+LLI +F V+LG LP G W+H ILPSLTLG
Sbjct: 124 RNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTLGAA 183
Query: 185 QVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLF 244
AV+AR TRA+ +DVL +DY+ TARAKG+ E VV KH LRNA+IP+VT M LQ +L
Sbjct: 184 VAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLL 243
Query: 245 GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
GG++V E VF WPG+G LLV ++ RDYPV+QA +L+ + ++ N + D+ Y I+P +
Sbjct: 244 GGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAI 303
Query: 305 R 305
R
Sbjct: 304 R 304
>pir||G71951 dipeptide transport system permease protein - Helicobacter pylori
(strain J99) >gi|4154809|gb|AAD05865.1| (AE001465)
DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 334
Score = 270 bits (684), Expect = 1e-71
Identities = 141/330 (42%), Positives = 208/330 (62%), Gaps = 28/330 (8%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+IIK+IL + +F VS+ F ++HL+PGDPA +LGE A + + R Q GL++PL
Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPLIE 63
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY +++ VL G+FGTS++ G PV R T++L + A +A V G+ G+LAA+
Sbjct: 64 QYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAIK 123
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG----------------- 167
++++FDY MT A+ +SMP FWLG++LI IF V+LG LP+ G
Sbjct: 124 RYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYLI 183
Query: 168 ----PGDW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
GD+ +HLILPS+ L AVIAR+TRA+M +V ++DY+ TA+AKG
Sbjct: 184 DSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCSS 243
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
V++ H LRNALIP+ T L + L GG+++TETVF WPG+G +V A+ QRD+P++Q
Sbjct: 244 FRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPIIQ 303
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRI 306
++ LII ++ + AN L D+ Y IDPR+R+
Sbjct: 304 SMSLIIAMMYIGANLLVDVLYAFIDPRIRL 333
>dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 314
Score = 267 bits (676), Expect = 1e-70
Identities = 138/310 (44%), Positives = 211/310 (67%), Gaps = 12/310 (3%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+II+++L + + VS+ FS+LHL+PGDPA + GE A ++ + R +LGL+ P+ +
Sbjct: 4 FIIRRLLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAGESAPQQTVENIRERLGLNDPVPV 63
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY +++S V++GD GTS G PV++ IA R TL+L++ + I++ GL+ G+++A
Sbjct: 64 QYFNYVSGVIQGDLGTSFRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAGIVSATK 123
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPI----------SGPGDWRHL 174
+++ D +M +A+F +SMP FWLG++LI F + G P SG G +R +
Sbjct: 124 RYSFADTSLMIIALFGLSMPNFWLGLMLIQWFAI--GYTPWLPFDTAWFAPSGWGSFRQI 181
Query: 175 ILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVT 234
+LP +TLG A++AR+TR++ML+VL +DYI TARAKG+ ER+VVY+HAL+NALIP+VT
Sbjct: 182 VLPVITLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKERVVVYRHALKNALIPVVT 241
Query: 235 YMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLAD 294
+ +Q +L GG+V+TE VF G+G L++ AI QRD+PVVQ VL+I VL V N L D
Sbjct: 242 VVGIQFGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQGAVLVISVLFVFVNLLVD 301
Query: 295 ITYTIIDPRV 304
ITY ++ R+
Sbjct: 302 ITYRFLNKRI 311
>pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548)
dipeptide ABC transporter, permease protein (dppB)
[Helicobacter pylori 26695]
Length = 334
Score = 267 bits (676), Expect = 1e-70
Identities = 141/330 (42%), Positives = 207/330 (62%), Gaps = 28/330 (8%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+IIK+IL + +F VS+ F ++HL+PGDPA +LGE A + + R Q GL++PL
Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPLIE 63
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY +++ VL G+FGTS++ G PV R T++L + A +A V G+ G+LAA+
Sbjct: 64 QYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAIK 123
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG----------------- 167
++++FDY MT A+ +SMP FWLG++LI IF V+LG LP+ G
Sbjct: 124 RYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYLI 183
Query: 168 ----PGDW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
D+ +HLILPS+ L AVIAR+TRA+M +V ++DY+ TA+AKG
Sbjct: 184 DSLIARDYGAFMDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCSS 243
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
V++ H LRNALIP+ T L + L GG+++TETVF WPG+G +V A+ QRD+P++Q
Sbjct: 244 FRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPIIQ 303
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRI 306
++ LII ++ + AN L DI Y IDPR+R+
Sbjct: 304 SMSLIIAMMYIGANLLVDILYAFIDPRIRL 333
>pir||C83082 probable permease of ABC transporter PA4503 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 336
Score = 259 bits (654), Expect = 4e-68
Identities = 141/329 (42%), Positives = 207/329 (62%), Gaps = 30/329 (9%)
Query: 7 IKKILSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFATEEQL-AKFRHQLGLDRPLYI 64
I + L LLIP F V++ +F+++ LIPGDP ++GE + Q+ A+ H+LGLD+PLY
Sbjct: 5 IARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLYQ 64
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY+D++ + +G+ G S+ PV S TL+L+ A + A GL+ G++AA+
Sbjct: 65 QYLDYVGNLAQGNLGKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALK 124
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG----------------- 167
+ ++FD+ VMT+++ SMP FW G+LLI++F V LG P+S
Sbjct: 125 RGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVSDRIGVLYEVEPKTGFMLI 184
Query: 168 -------PGDW----RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
G + RHLILP++ LG +AVIAR+TR+ ML+VL +DY+ TARAKGL
Sbjct: 185 DTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLSP 244
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
VV+ HALRNALIP++T + LQ+ L GAV+TET+F WPG+G L+ AI RDYPVVQ
Sbjct: 245 ARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQ 304
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVR 305
+L++ L ++ NF+ DI Y + +PR+R
Sbjct: 305 NGILLVATLVILVNFVVDILYGLANPRIR 333
>dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 333
Score = 258 bits (653), Expect = 5e-68
Identities = 136/330 (41%), Positives = 210/330 (63%), Gaps = 30/330 (9%)
Query: 5 WIIKKILSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLY 63
+++ +++ LLIP+ I +++ +FSI+HLIPG+PA+ +LGE A+ + +A+ +LGL+ P
Sbjct: 4 YVLHRVM-LLIPVLIGMTIITFSIVHLIPGNPAQTILGEQASPQAVAELEERLGLNEPYL 62
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+QY ++ +L GDFGTSL P+SE I L TL+LT A + A V G+ G+++A
Sbjct: 63 VQYGYYVRDLLTGDFGTSLRTRAPISEEIVPYLGATLELTFFAMLFAVVVGVNAGIISAW 122
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG---PGD---------- 170
+H+ FDY M +A+ +SMP FWL ++ IF +LG P G P D
Sbjct: 123 KQHSFFDYACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPIQSITGLYV 182
Query: 171 ------WR---------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLP 215
WR HL+LP++ LG +A+IAR+TR++ML+VL DYI T AKG
Sbjct: 183 LDAILHWRWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIRTVHAKGSS 242
Query: 216 ERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVV 275
+ +V+YKHAL+NA+IP++T LQ L GGA++TET+F WPG+G + AI RDYPV+
Sbjct: 243 QFVVIYKHALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAITYRDYPVI 302
Query: 276 QAIVLIIGVLTVIANFLADITYTIIDPRVR 305
Q+ +L++ ++ V+ N + D+ Y+ IDPR++
Sbjct: 303 QSGILVVAIMFVVINLIVDLLYSYIDPRIK 332
>emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 330
Score = 258 bits (652), Expect = 7e-68
Identities = 136/300 (45%), Positives = 194/300 (64%), Gaps = 1/300 (0%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQ 65
++K++L+ L +F + +F ++ L GDP + LL AT EQ RH LGLD+ L+ Q
Sbjct: 29 VLKRLLTALFVLFCTATVAFFLVRL-SGDPVKILLPPDATAEQERVLRHSLGLDQSLFAQ 87
Query: 66 YIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYK 125
Y+D++ +L DFG SLV G PVSE++A RL T++L A + V + G++AA+ +
Sbjct: 88 YLDYLRGLLHLDFGDSLVYGQPVSEILADRLPATIELAAAALAVTLVVAIPAGIVAAMRR 147
Query: 126 HTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLPQ 185
D VMT + S P FW+GILLIL+F V L LP SG G +L+LP++TL +
Sbjct: 148 GRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRALPASGYGTLANLVLPAVTLAVYS 207
Query: 186 VAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFG 245
VAV+ARL R++++DVL D+I +ARAKG VV +H LRNA +P+VT + L++ L G
Sbjct: 208 VAVVARLLRSSLIDVLSSDHIRSARAKGFGPLQVVLRHGLRNASLPVVTVVGLEVGNLLG 267
Query: 246 GAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
GA++TE VF WPG+G L V AI RD+P+VQA VL V+ N L D++Y+ +DPRVR
Sbjct: 268 GAILTERVFSWPGVGQLTVEAISNRDFPLVQATVLFFAATFVVVNLLVDLSYSFLDPRVR 327
>sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP
>gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium
sp. NGR234]
Length = 313
Score = 256 bits (646), Expect = 3e-67
Identities = 128/309 (41%), Positives = 199/309 (63%), Gaps = 8/309 (2%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+I+++++S + + +V +F F +L L PGDPA + G ATE+ +A R +LGL+ PL +
Sbjct: 4 YILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPV 63
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
Q++ W S VLRG+FG S+ GVPV +L++ RL T+ L+V I++ G+ FG+LAA
Sbjct: 64 QFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWR 123
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG-------PGDW-RHLIL 176
D + T + S+P F +G +LI F ++ LP+ G W HLIL
Sbjct: 124 SGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAPWFLHLIL 183
Query: 177 PSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYM 236
P++TL +P +A IAR+TR +ML+VL +DY+ TA AKG +++ HAL+NA +P++T +
Sbjct: 184 PTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPILTVI 243
Query: 237 FLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADIT 296
+ ++ GG V+TETVF PG+G L+V AI RDYP++Q ++++I L V+ N L D+
Sbjct: 244 GISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLA 303
Query: 297 YTIIDPRVR 305
YT+IDPR+R
Sbjct: 304 YTLIDPRIR 312
>dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 254 bits (642), Expect = 1e-66
Identities = 124/301 (41%), Positives = 192/301 (63%), Gaps = 1/301 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
++ K++ ++ +FI+S F+++ + G+P +L E A++E + + LGLD+P +
Sbjct: 4 FVFKRLAEMIPVLFIISFIVFALV-FVAGNPVALMLPEDASQEDIDQLTASLGLDQPFLV 62
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY ++ +++GDFG S L+ RL TL+L V A ++A + G+ +A
Sbjct: 63 QYGKYLLNLVQGDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMAIPLGVWSATK 122
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLP 184
+H+ D + +V +MP FWLGI+LILIF V LG P+SG G HL+LP++TL
Sbjct: 123 QHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSGRGTLGHLVLPAMTLATG 182
Query: 185 QVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLF 244
A I RL R++M+++L +DYI TAR+KG+ E MVVYKHA RN+LIPLVT + LQ +
Sbjct: 183 IAAEITRLLRSSMIEILNQDYIRTARSKGIREGMVVYKHAFRNSLIPLVTIVALQTSTVV 242
Query: 245 GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
GG ++TETVF WPG+G LL+ A+ RD +VQA V +I +L + N +AD+ Y ++DPR+
Sbjct: 243 GGTLITETVFSWPGLGQLLIQAVHTRDMAIVQACVFVIAILVIFMNLVADVLYRLLDPRI 302
Query: 305 R 305
+
Sbjct: 303 K 303
>dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum
anthropi]
Length = 313
Score = 254 bits (642), Expect = 1e-66
Identities = 124/305 (40%), Positives = 199/305 (64%), Gaps = 5/305 (1%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
++I ++L + + V++ F +HL+PGDP R ++ ++++A HQLG+DRPL +
Sbjct: 6 YVISRLLHAIPVVLGVTICVFLTIHLVPGDPVRIMMHGRIGDDEVAAIYHQLGMDRPLLV 65
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY D++ L G+ GTS+VQ PV++L+ +L TL L + +I+ + + G++A+ Y
Sbjct: 66 QYFDFVRHALTGNLGTSIVQKAPVTDLVLEKLWPTLLLLAFSTLISVLIAIPLGLVASFY 125
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWR-----HLILPSL 179
++ D+ + ++ +MP +W+G+LLIL+FG+ LG PISG G HL LP+L
Sbjct: 126 RNRWPDHAIRLVSSIGFAMPSYWIGLLLILLFGLWLGWFPISGIGQGHLEILHHLFLPAL 185
Query: 180 TLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ 239
T+ L V+ + R++MLDVL +YI ARAKG+ E ++ KH +RNALIP++T + +
Sbjct: 186 TISLFLGPVLIQSLRSSMLDVLTSEYIEVARAKGVSEWRILTKHVMRNALIPVITVLAIN 245
Query: 240 IPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTI 299
I WL GAV+ E VFG PG+G+LLV ++ RDYP++Q + L+ GVL V+ N LAD++Y +
Sbjct: 246 ISWLLSGAVIVEYVFGLPGLGSLLVRSVGYRDYPLIQGLSLVFGVLVVVINLLADLSYML 305
Query: 300 IDPRV 304
+D RV
Sbjct: 306 VDRRV 310
>sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|11279742|pir||T44636 dipeptide transport protein
dppB [imported] - Bacillus firmus
>gi|1813496|gb|AAB41689.1| (U64514) dipeptide
transporter protein dppB [Bacillus firmus]
Length = 333
Score = 251 bits (635), Expect = 7e-66
Identities = 136/324 (41%), Positives = 205/324 (62%), Gaps = 29/324 (8%)
Query: 11 LSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQYIDW 69
L LLIP+ I +++ +FSI+HLIPG+PA+ +LGE A+ + +A +LGL+ P ++QY +
Sbjct: 9 LLLLIPVLIGMTIVTFSIIHLIPGNPAQTILGEQASPQAIADLEERLGLNEPYWVQYGLY 68
Query: 70 MSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLF 129
M + GD GTSL P+ E I L+ T++LT+ A I A + G+ G+++A +++ F
Sbjct: 69 MKDLATGDLGTSLRTNKPIMEEIWPYLAATIELTIFAMIFAIIIGVNAGIVSAWKQNSWF 128
Query: 130 DYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILP-----------------------IS 166
DY+ M +A+ +SMP FWL ++ IF +LG LP IS
Sbjct: 129 DYLSMFIALVGVSMPIFWLALMEQWIFAQELGWLPAFGRDNPRDPIISTTGLYVFDTIIS 188
Query: 167 GPGD--W---RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221
G D W +HLILP + LG +A+IAR+TR++ML+VL DYI T AKG + +V+Y
Sbjct: 189 GQFDKTWESIKHLILPGIALGTIPMAIIARMTRSSMLEVLRSDYIRTVNAKGSGQGVVIY 248
Query: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281
KHAL+NALIP++T + LQ L GGA++TET+F WPG+G + AI RDYPV+Q+ +L+
Sbjct: 249 KHALKNALIPVLTVVGLQTGNLLGGAILTETIFSWPGIGRYIFEAINYRDYPVIQSGILV 308
Query: 282 IGVLTVIANFLADITYTIIDPRVR 305
+ + V+ N D+ Y+ IDPR++
Sbjct: 309 VATIFVLINLFVDLLYSYIDPRIK 332
>gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB
[Agrobacterium tumefaciens]
Length = 323
Score = 244 bits (617), Expect = 9e-64
Identities = 124/307 (40%), Positives = 197/307 (63%), Gaps = 11/307 (3%)
Query: 9 KILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA--TEEQLAKFRHQLGLDRPLYIQY 66
++++ L+ +++++ FSI++++PGDP LLG + + E +A RHQLGLD+P+ QY
Sbjct: 14 RLITALVQLWVIATLVFSIMYIMPGDPVLLLLGPESNPSPEAVAAMRHQLGLDQPVMSQY 73
Query: 67 IDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKH 126
+ W+ GD G S V GV V E I + T++L A I+A + G+ G+ AA+ +
Sbjct: 74 LKWLGNAASGDLGNS-VDGVSVVEYITASIPKTMELATAAIILASIIGVPIGIAAALRRG 132
Query: 127 TLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD--------WRHLILPS 178
D ++ +L+ +S+P + LG LLIL+F +KLG LP SG D ++ L LP+
Sbjct: 133 RFLDSLLTSLSTLGISLPVYILGSLLILMFSLKLGWLPSSGYTDISRSVFLHFQKLTLPA 192
Query: 179 LTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFL 238
+TLGL A IAR+TR++ML++L +D++ + RA+G+ ER V++ H LRNA IP+VT + L
Sbjct: 193 VTLGLGLAASIARMTRSSMLEILGRDFVRSLRARGMRERRVIWVHVLRNAAIPIVTIIGL 252
Query: 239 QIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYT 298
Q+ L GG V+ E ++ WPG+ LLV A+ R+YP+VQ +L I L ++ N DI Y+
Sbjct: 253 QLGNLMGGTVLVEALYNWPGLSTLLVTAVSNRNYPLVQGSILTIAALFILINLCVDILYS 312
Query: 299 IIDPRVR 305
++DPR+R
Sbjct: 313 LLDPRIR 319
>pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 345
Score = 244 bits (617), Expect = 9e-64
Identities = 133/340 (39%), Positives = 202/340 (59%), Gaps = 39/340 (11%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
++I+++L L+ + +S+ F+ + LIPG P +LGE T E +A H G DRP +
Sbjct: 4 YLIRRLLRTLLVMLGISLLVFTFVRLIPGGPCTAILGERGTPESIAACNHDRGFDRPWFF 63
Query: 65 -----------QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVF 113
QY ++M+ +LRGD S++ +PV E + R T++L A I A +
Sbjct: 64 NAGGEGGALNAQYPEYMAGLLRGDLDKSIITQIPVKEDLKTRFPATVELAFAALIFALLV 123
Query: 114 GLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG------ 167
GL G++AA+ +++L+D + T+++ +SMP FWLG+LL FGVKLG LP S
Sbjct: 124 GLPAGIIAALRRNSLWDNLATTISLIGVSMPVFWLGLLLSYFFGVKLGWLPPSARLGTEF 183
Query: 168 -------------------PGDW---RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDY 205
W +HL+LP++ LG +A+IAR+TR+++LDVL +DY
Sbjct: 184 DLQSITGMNVLDGLLRGQPAAAWDAAKHLVLPAIALGTIPLAIIARITRSSLLDVLGQDY 243
Query: 206 IMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVM 265
+ TARAKGL R + KHALRNAL+P+VT + LQI L GGAV+TET+F W G+G+ L
Sbjct: 244 VRTARAKGLSARNITLKHALRNALLPIVTVIGLQIGGLLGGAVLTETIFSWNGVGSWLYD 303
Query: 266 AIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
AI RD+ V+Q V+ I ++ + N L D++Y +DPR++
Sbjct: 304 AISARDFFVIQGGVIFIALVISLVNLLVDLSYAALDPRIQ 343
>pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus
horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa
long hypothetical oligopeptide transport permease
protein APPB [Pyrococcus horikoshii]
Length = 323
Score = 244 bits (617), Expect = 9e-64
Identities = 126/318 (39%), Positives = 194/318 (60%), Gaps = 15/318 (4%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPL 62
K +IIK+ + L++ IF V +F I++ PG+PA+ + GE++TEE + + GLD+P+
Sbjct: 5 KVYIIKRSIQLILVIFFVLFLNFIIINAAPGNPAQLMAGEYSTEEYIKAIEARWGLDKPI 64
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+I+++ +M +L GD G S PVS+LI R+ TL LTV + I+A++ G+ +AA
Sbjct: 65 HIRFLIYMKNLLHGDLGYSYRYLEPVSKLIMERIGKTLLLTVPSIILAFLVGVWLARIAA 124
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--------PGDW--- 171
D + + + F SMP FWLG+LLIL+FGVKLGILPI+G W
Sbjct: 125 RKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGVKLGILPIAGMTNIRAVYSSSWDKA 184
Query: 172 ----RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRN 227
+H++LP TL L Q+ R+TR +++ +DY+ T A G ++ + K+ RN
Sbjct: 185 FDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTEDYVKTFDAVGFSKKHIFNKYIFRN 244
Query: 228 ALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTV 287
A++P VT + L++ + F GA + E VFGWPGMG LL+ A F RDYP++ I L+I V
Sbjct: 245 AILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLLLDAAFARDYPLIMGIYLVIAVSVA 304
Query: 288 IANFLADITYTIIDPRVR 305
+A F+ D+ Y ++DPR+R
Sbjct: 305 VAIFITDLLYAVLDPRIR 322
>sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1073367|pir||S47765 dipeptide transport system
permease protein dppb - Escherichia coli
>gi|349226|gb|AAA23703.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039)
dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1|
(AE000431) dipeptide transport system permease protein 1
[Escherichia coli K12]
Length = 339
Score = 244 bits (617), Expect = 9e-64
Identities = 131/332 (39%), Positives = 203/332 (60%), Gaps = 33/332 (9%)
Query: 7 IKKILSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFA-TEEQLAKFRHQLGLDRPLYI 64
I + L L+IP FI +++ +F+ +H+IPGDP + GE + E+ A+ +LGLD+P++
Sbjct: 5 ILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQ 64
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY+ ++ V+ GD G S+ +PV E R TL+L V A I A G+ G+LAAV
Sbjct: 65 QYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVK 124
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG----------------- 167
+ ++FD+ + LA+ SMP FW G++LI++ V + P+SG
Sbjct: 125 RGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGF 184
Query: 168 ----------PGDW----RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKG 213
G++ H+ILP++ LG +AVI R+TR++ML+VL +DYI TARAKG
Sbjct: 185 MLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKG 244
Query: 214 LPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYP 273
L V+ HALRNA++P+VT + LQ+ L GA++TET+F WPG+G L+ A+ +RDYP
Sbjct: 245 LTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYP 304
Query: 274 VVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
VVQ VL++ + ++ N L D+ Y +++PR+R
Sbjct: 305 VVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
>sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB
>gi|2126889|pir||I40546 oligopeptide ABC transporter
(permease) appB - Bacillus subtilis
>gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus
subtilis] >gi|2633493|emb|CAB12996.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 317
Score = 241 bits (609), Expect = 8e-63
Identities = 127/313 (40%), Positives = 191/313 (60%), Gaps = 14/313 (4%)
Query: 5 WIIKKILSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLY 63
+II++ L + IPI + +++ SF I+ PGDP ++ ++ +F + GL+ P Y
Sbjct: 4 YIIRRTL-MSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEKYGLNDPQY 62
Query: 64 IQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY+ W+ +++GDFGTS+V+ G PVSELI RL TL L + + I+A + + FG+L+A
Sbjct: 63 VQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVLSA 122
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWR---------- 172
++ DY + + +++P FW G++LI++ V LG P G
Sbjct: 123 KRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGVETLNTEFNIFDRIH 182
Query: 173 HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPL 232
HLILP+ L +A + R TR+NMLDVL +DYI TARAKG E V++KH LRNAL+P+
Sbjct: 183 HLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFKHGLRNALLPV 242
Query: 233 VTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRD-YPVVQAIVLIIGVLTVIANF 291
+T L IP GG+VV E +F WPG+G L V + FQR ++ A+ +I VL V+ N
Sbjct: 243 ITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVISAVLVVVGNL 302
Query: 292 LADITYTIIDPRV 304
+ADI Y I+DPR+
Sbjct: 303 IADILYAIVDPRI 315
>pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 241 bits (609), Expect = 8e-63
Identities = 128/331 (38%), Positives = 194/331 (57%), Gaps = 28/331 (8%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPL 62
K ++I +IL IFI+ F +L +IPGDP +LG A +E + + RH+LGLD+P+
Sbjct: 4 KNYVITRILLAAPMIFILLALIFLVLRIIPGDPVLAILGGKAPKEVIEQKRHELGLDKPI 63
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+Q+ D++ +L+GD G S + G PV E I R TL+LT+ A+I+A + G+ +G AA
Sbjct: 64 IVQFFDYIGDLLKGDLGKSTLTGRPVWEEIKERFPATLELTLFAFIVAVLIGIFWGSFAA 123
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--------------- 167
+ + D ++ ++P FW G+++ IFGV L LP+ G
Sbjct: 124 YKRDSGVDIGARMFSMVMYAVPVFWFGLMMQYIFGVILRWLPVGGRLSPTMNLKVITGIY 183
Query: 168 ------PGDWR-------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGL 214
G+W HL+LP LTLGL +V R+ R N + L +D++ ARA+GL
Sbjct: 184 SIDALFTGNWEALKDVFEHLLLPGLTLGLVISSVFVRMVRNNTVLTLAQDFVKAARARGL 243
Query: 215 PERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPV 274
ER+V++++AL+NAL+P+ T M LQ L GGAV+TET F WPG+G+ LVM I RD+P
Sbjct: 244 KERVVLFRYALKNALVPIFTMMGLQFALLLGGAVLTETTFSWPGLGSYLVMKIRYRDFPA 303
Query: 275 VQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
+Q V+ ++ V+ + L D+ +IDPRVR
Sbjct: 304 IQGTVVFFALIVVVISILVDVINALIDPRVR 334
>gi|10954943 Probable accD [Agrobacterium tumefaciens]
>gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD
[Agrobacterium tumefaciens]
Length = 308
Score = 238 bits (601), Expect = 7e-62
Identities = 127/302 (42%), Positives = 186/302 (61%), Gaps = 1/302 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+I+ +++ +I + + F F IL L GDPAR +LGE AT E LA FR GLDR +
Sbjct: 4 FILARLVRAIIVMMLTVTFVFIILRL-GGDPARAMLGENATPEALAAFRTAWGLDRSIPE 62
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
Q++ +++ LRGDFG S G V +IA R+ TL LT++A++++ + G+ G++AAV
Sbjct: 63 QFLIYLASALRGDFGVSAADGREVFTVIAERIPKTLTLTISAFVLSILVGIPAGIIAAVR 122
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLP 184
+ + D VM AV S+P F LG+ LI +F V +LP SG W+H ILP T GL
Sbjct: 123 RDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAILPVATFGLV 182
Query: 185 QVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLF 244
A IAR R+ +++VLE+ YI ARA G+P+ VV +HAL NA IP+VT + L
Sbjct: 183 NAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHALPNAAIPMVTMLGFVAAGLL 242
Query: 245 GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
GG+ + ETVF WPG+G+ V AI D VVQA++L+ V N + D+ Y +++P++
Sbjct: 243 GGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFMVTINLIVDVLYAVLNPKI 302
Query: 305 RI 306
R+
Sbjct: 303 RL 304
>dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 314
Score = 237 bits (598), Expect = 1e-61
Identities = 118/308 (38%), Positives = 187/308 (60%), Gaps = 5/308 (1%)
Query: 5 WIIKKILSLLIPIFIVSVF-SFSILHLIPGDPARYLLGE---FATEEQLAKFRHQLGLDR 60
+I K+I ++ IPI + ++F F + L P DPA L TEE LA+ RH+ GLD+
Sbjct: 4 YIAKRIFAV-IPIVLFAIFIMFVFIRLSPVDPAEAYLTAANIHPTEELLAEKRHEFGLDQ 62
Query: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
P+ +QY+ + KV + DFG S V PV + + R+ TL+L V++ +A + + G L
Sbjct: 63 PMAVQYVQTIVKVFQLDFGHSYVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLGFL 122
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT 180
+A+YK++L D L+ S+P FWLG LLI F VKL + P+ G G W HL+LP++T
Sbjct: 123 SAIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEGRGSWAHLVLPTVT 182
Query: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
L L +A+ RL RA++L+ +++ Y++ AR +G+ E++++ KH L+ A+ P++T + + +
Sbjct: 183 LSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKEKVIMVKHVLKLAISPVITGLGMNV 242
Query: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
L G ++ E VF WPG G V AIF RD PV+Q VL+ L ++ N + D+ +
Sbjct: 243 GKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQCYVLLAACLFIVCNLIVDLVQLAM 302
Query: 301 DPRVRIMG 308
DPR+ G
Sbjct: 303 DPRISSKG 310
>gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium
sp. NRC-1]
Length = 347
Score = 235 bits (592), Expect = 7e-61
Identities = 129/343 (37%), Positives = 200/343 (57%), Gaps = 40/343 (11%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPL 62
K +I+K++L L+ +F V+ F F ILHL GDPAR +LG+ A ++Q+ + R +LGL+ P+
Sbjct: 4 KRFILKRLLLLVPVLFGVATFVFVILHLASGDPARVILGQRAPQQQVIQLRQELGLNDPV 63
Query: 63 YIQYIDWMSKVLRGDFGTS--LVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
Y+QY ++ + DFG S + QG V ++A ++ TL+L + I + G+ G++
Sbjct: 64 YVQYARFLVDAAQFDFGQSYSVAQGTAVRSVLADKIPVTLELALYGQAIGILLGIPLGVI 123
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--------PGDWR 172
+AV + TL D+ A+ +S+P +W G LLIL F LG+ P SG W
Sbjct: 124 SAVEQDTLTDHFGRIGALSGISVPIYWSGPLLILAFSTFLGVFPASGRIESTIFLADSWS 183
Query: 173 ------------------------------HLILPSLTLGLPQVAVIARLTRANMLDVLE 202
HLILP+ T+G+ +A+I+R+ R++ML+V+
Sbjct: 184 LFGVTLPLTGMLTVDTLLLGNVSAWVSAVMHLILPAATIGIYSMALISRMMRSSMLEVVR 243
Query: 203 KDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNL 262
+DY+ TARAKG ++ + KH RNAL+P++T + +Q L GGAV+TETVFG G+G +
Sbjct: 244 QDYMRTARAKGQGSKITIMKHGFRNALVPVITVIGIQFGSLLGGAVLTETVFGIEGIGTI 303
Query: 263 LVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
LV AI DYP+VQ VL +L + N L D+TY+ +DPR++
Sbjct: 304 LVSAINANDYPLVQGTVLTFALLFTLVNLLVDVTYSYLDPRIQ 346
>pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD
[Agrobacterium tumefaciens]
Length = 306
Score = 227 bits (573), Expect = 1e-58
Identities = 125/302 (41%), Positives = 184/302 (60%), Gaps = 3/302 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+I+ +++ +I + + F F IL L GDPAR +LGE AT E LA FR GLDR +
Sbjct: 4 FILARLVRAIIVMMLTVTFVFIILRL-GGDPARAMLGENATPEALAAFRTAWGLDRSIPE 62
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
Q++ +++ LRGDFG S G V +I+ R+ TL LT++A++++ + G+ G++AAV
Sbjct: 63 QFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGIIAAVR 122
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLP 184
+ + D VM AV S+P F LG+ LI +F V +LP SG W+H ILP T GL
Sbjct: 123 RDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAILPVATFGLV 182
Query: 185 QVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLF 244
A IA R +++VLE+ YI ARA G+P+ VV +HAL NA IP+VT + L
Sbjct: 183 NAAAIALPFR--VIEVLEQPYIAAARADGIPKWEVVIRHALPNAAIPMVTMLGFVAAGLL 240
Query: 245 GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
GG+ + ETVF WPG+G+ V AI D VVQA++L+ V N + D+ Y +++P++
Sbjct: 241 GGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFMVTINLIVDVLYAVLNPKI 300
Query: 305 RI 306
R+
Sbjct: 301 RL 302
>gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB
[Agrobacterium tumefaciens]
Length = 313
Score = 227 bits (572), Expect = 2e-58
Identities = 114/309 (36%), Positives = 196/309 (62%), Gaps = 9/309 (2%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
++ K++ ++ + V F ++ ++PGDP +LG+ A+ E +A R +LGLD+P+ +
Sbjct: 4 YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILGDQASPESVAALRQRLGLDQPIGL 63
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
QY+ ++ ++GD G S+V G PV+E + L YTL+LT + ++ + G+ G+ AAV
Sbjct: 64 QYVQFLGSAVKGDLGNSMVTGRPVTEEVMSVLPYTLELTFASLVVGLILGVPTGVWAAVK 123
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPI--SGPGD------WRHLIL 176
+ L DYI+ +++ +S+P F I+L+++F + L P+ +G GD W+ + L
Sbjct: 124 RSKLPDYILRLISLIGLSLPGFVSAIVLLIVFAINLRWFPVISAGTGDGIVNRVWQ-MTL 182
Query: 177 PSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYM 236
P ++L L +A I R+TR+ ML+VL +D++ TARAKG +V+++HAL N LIP+ T +
Sbjct: 183 PVISLALIMMAYITRVTRSAMLEVLNQDFVRTARAKGARPSVVIWRHALGNCLIPISTVV 242
Query: 237 FLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADIT 296
L + L G +V+TE VF PG+G L++ A+ QRDY ++Q +V++ ++ VI N D+T
Sbjct: 243 GLYLGILIGNSVLTEIVFSRPGLGKLILTALSQRDYTLLQGMVVVYTLIVVIVNLATDLT 302
Query: 297 YTIIDPRVR 305
Y + DPRV+
Sbjct: 303 YGLFDPRVQ 311
>pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 321
Score = 226 bits (571), Expect = 2e-58
Identities = 120/318 (37%), Positives = 190/318 (59%), Gaps = 17/318 (5%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPA-RYLLGEFATEEQLAKFRHQLGLDRPL 62
++I ++++ ++ + I+S F I+ PGD Y L +++ L K +LGLD+P
Sbjct: 3 KYIARRLIIMIPELIIISFIVFIIMEAAPGDFLDMYRLDPSVSQQFLEKMEKELGLDKPW 62
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY W+ VL+GDFG S PVS LI R+ T+ L+V++ W+ G++ G+ +A
Sbjct: 63 IVQYGIWLKNVLKGDFGYSFYYRRPVSTLIWERVFATVILSVSSLAFEWLLGIIVGVFSA 122
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD--------WR-- 172
+ K++++D I+ +A +++P F+L ILL L K G PI+G W
Sbjct: 123 LKKYSIWDKILTVVAFSGIALPGFFLAILL-LYMAAKTGWFPIAGMVSVNHNQMTTWEKF 181
Query: 173 -----HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRN 227
HL+LP++ LG A + R R ++LDVL +DY+ ARAKG+PER+V+YKHALRN
Sbjct: 182 KDIASHLVLPTIALGFGGFASLMRYMRGSLLDVLNEDYVEFARAKGMPERVVIYKHALRN 241
Query: 228 ALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTV 287
A+ P++T++ I + GGAV+ E +F WPGMG L+ A+ Q+D +V A +I ++ V
Sbjct: 242 AINPMITFLGFSISNVLGGAVIIENIFAWPGMGRLIYQALLQQDIYIVMASAVISAIMLV 301
Query: 288 IANFLADITYTIIDPRVR 305
I N +AD+ +DPRVR
Sbjct: 302 IGNLVADVLLAAVDPRVR 319
>gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]
Length = 341
Score = 226 bits (569), Expect = 4e-58
Identities = 115/316 (36%), Positives = 191/316 (60%), Gaps = 15/316 (4%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQ--------LAKFRHQL 56
+I K+++S++ + I+SV F +++L+PGDP +L T+ + R L
Sbjct: 22 YIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAMLDPEKTKAMTPEERALYIENMRKFL 81
Query: 57 GLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
G D+ +Y WM RG+FG S+ PV+E I + + ++ + +++A++ +
Sbjct: 82 GYDKGPVERYFLWMGDTFRGEFGYSIKYNKPVNEFIGTYIKRSFRINIWGFLLAFLISIP 141
Query: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD------ 170
G+ AAV K++ FD V L + +S+P F+L +LLI++F + + ILP SG D
Sbjct: 142 VGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIMVFVIFMQILPFSGMSDPRGILP 201
Query: 171 -WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNAL 229
W ++ILP + L + + R R+ M+++L+ DYI TARAKGL E++V+Y+HA +NAL
Sbjct: 202 DWHYIILPVTVVVLTSLVGLIRYVRSAMIEILKSDYIRTARAKGLSEKVVIYRHAFQNAL 261
Query: 230 IPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIA 289
IP+VT + L IP LFGG++V E +F +PGMG L+ A +D V+Q ++L G+LT++
Sbjct: 262 IPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGLLMNYAYGFKDRAVLQTVLLFFGLLTLLG 321
Query: 290 NFLADITYTIIDPRVR 305
N D+ Y ++DPR+R
Sbjct: 322 NIFIDVGYMVVDPRIR 337
>sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR
>gi|7449121|pir||A64902 peptide transport system
permease protein b1486 - Escherichia coli
>gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1787761|gb|AAC74559.1| (AE000245) putative transport
system permease protein [Escherichia coli K12]
Length = 340
Score = 225 bits (568), Expect = 5e-58
Identities = 129/327 (39%), Positives = 188/327 (57%), Gaps = 29/327 (8%)
Query: 13 LLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQYIDWMSK 72
L++ + V V +F I HLIPGDPAR L G+ A++ + R QLGLD+PLY+Q+ ++S
Sbjct: 14 LVLVVAGVCVITFIISHLIPGDPARLLAGDRASDAIVENIRQQLGLDQPLYVQFYRYVSD 73
Query: 73 VLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDYI 132
+ GD GTS+ G PV E + TL+L A ++A + G+ G+L+AV+++ D++
Sbjct: 74 LFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVWRNRWLDHL 133
Query: 133 VMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP-GDW-------------------- 171
V +A+ +S P FWLG+ +I++F L ILP G DW
Sbjct: 134 VRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDALLEGN 193
Query: 172 --------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKH 223
+HLILP+LTL + ++AR R+ ML+ L +DYI TARA GLP +V +
Sbjct: 194 GEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCY 253
Query: 224 ALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIG 283
AL NALIP +T + L + L GAV+TETVF WPGMG +V +I D+P V +++
Sbjct: 254 ALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVS 313
Query: 284 VLTVIANFLADITYTIIDPRVRIMGGE 310
V+ N + D+ Y IDPR+ GGE
Sbjct: 314 FAYVLVNLVVDLLYLWIDPRIGRGGGE 340
>sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1074012|pir||G64188 transmembrane protein dppB -
Haemophilus influenzae (strain Rd KW20)
>gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus
influenzae] >gi|1574114|gb|AAC22840.1| (U32798)
dipeptide ABC transporter, permease protein (dppB)
[Haemophilus influenzae Rd]
Length = 333
Score = 224 bits (564), Expect = 1e-57
Identities = 130/332 (39%), Positives = 191/332 (57%), Gaps = 32/332 (9%)
Query: 4 EWIIKKILSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFA-TEEQLAKFRHQLGLDRP 61
+++ K+IL ++IP FI +++ +F+++H IPGDP ++GE T E + HQLGLD P
Sbjct: 3 KFVFKRIL-MVIPTFIAITLITFALVHFIPGDPVEIMMGERGLTAEVHQQMMHQLGLDLP 61
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
LY QY ++ V++GDFG S PV T +L A + + G++ G +A
Sbjct: 62 LYQQYFHYIGNVIQGDFGASFRTQQPVLTEFFTLFPATAELAFFALFWSLLGGIILGTIA 121
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD---W------- 171
AV K + + V ++ SMP FW G++LIL +LG LP G D W
Sbjct: 122 AVKKDSWISHTVTAASLTGYSMPIFWWGLILILYVSPQLG-LPQGGRLDNEFWIDTPTGF 180
Query: 172 ------------------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKG 213
+ LILP++ LG +A+I R+TR+ ML+VL +DYI TA+AKG
Sbjct: 181 MLIDSWLSGVSGAFENAVKSLILPAIVLGTVPLAIITRMTRSAMLEVLGEDYIRTAKAKG 240
Query: 214 LPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYP 273
L +V HALRNALIP+VT + L + L GAV+TET+F WPG+G ++ AI RDYP
Sbjct: 241 LSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIFSWPGIGKWIIDAIQARDYP 300
Query: 274 VVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
V+Q VLII + ++ N D+ Y +++PR+R
Sbjct: 301 VLQGSVLIIATIIIVVNLTVDLLYGVVNPRIR 332
>dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 315
Score = 221 bits (558), Expect = 7e-57
Identities = 111/303 (36%), Positives = 186/303 (60%), Gaps = 3/303 (0%)
Query: 7 IKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGE---FATEEQLAKFRHQLGLDRPLY 63
I+++L + + + V+ SF + L PGDP +L ++E++ R +G ++PL
Sbjct: 6 IRRLLEVALFVLFVTFVSFLFVRLAPGDPVLTILNVDELSVSQEEVETLREDMGFNKPLL 65
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+QY W+ +R DFG S V G PV ++I L TL+LTV + I+ + + G LAA+
Sbjct: 66 VQYGHWLLDFVRLDFGVSYVTGQPVMDMIMKGLPATLELTVGSLIVMLIVSIPLGSLAAL 125
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGL 183
Y++ D++ LA+ ++P FWLG++ I +F V+L LP G + LILPS+TLGL
Sbjct: 126 YRNRWIDHLSRILAILGAAIPSFWLGLIFIDLFAVRLNWLPTMGRDGFVSLILPSVTLGL 185
Query: 184 PQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWL 243
+V RL R+++LD L +++I ARA+GL E+ + HALR++L P++T + + L
Sbjct: 186 AISSVYVRLLRSSLLDSLSQEFIRAARARGLSEKRIFVAHALRHSLPPVITVFGVSLGSL 245
Query: 244 FGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPR 303
GG VV E +F +PG+G L+V AI QRDYP++Q +L++ ++ + N D++Y ++P
Sbjct: 246 IGGVVVIEVLFAYPGIGKLVVDAIRQRDYPLIQGYILVMALIVFVINTSVDLSYRYLNPE 305
Query: 304 VRI 306
+++
Sbjct: 306 MKL 308
>pir||S47696 nickel transport system permease protein nikB - Escherichia coli
>gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia
coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of
nickel, membrane protein [Escherichia coli K12]
Length = 314
Score = 219 bits (553), Expect = 3e-56
Identities = 117/304 (38%), Positives = 177/304 (57%), Gaps = 3/304 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEF---ATEEQLAKFRHQLGLDRP 61
+++++ L L+ + SV F +L L GDPA L T E LA R LGLD+P
Sbjct: 4 YVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQP 63
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
LY+QY W+ K L DFG S PV + + L TL+L A ++ + + G+ A
Sbjct: 64 LYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWA 123
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTL 181
A ++ L D+ V +A +SMP FWL LL++ F V L LP G G W+H+ILP++++
Sbjct: 124 ARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSI 183
Query: 182 GLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIP 241
+A+ ARL RA+MLDV + ++ AR +GL ++ +H LRNA +P++T + + I
Sbjct: 184 AFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIG 243
Query: 242 WLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIID 301
L GG ++ E +F WPG+G V AIF RDYPV+Q L++ V+ V+ N + D+ +D
Sbjct: 244 ELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALD 303
Query: 302 PRVR 305
PR+R
Sbjct: 304 PRIR 307
>sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB
>gi|628767|pir||S39595 NikB protein - Escherichia coli
>gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia
coli]
Length = 314
Score = 217 bits (548), Expect = 1e-55
Identities = 116/304 (38%), Positives = 176/304 (57%), Gaps = 3/304 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEF---ATEEQLAKFRHQLGLDRP 61
+++++ L L+ + SV F I+ L GDPA L T E LA R LGLD+P
Sbjct: 4 YVLRRFLLLIPMVLAASVIIFLIVRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQP 63
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
LY+QY W+ K L DFG S PV + + L TL+L A ++ + + G+ A
Sbjct: 64 LYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWA 123
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTL 181
A ++ L D+ V +A +SMP FWL LL++ F V L LP G G W+H+ILP++++
Sbjct: 124 ARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSI 183
Query: 182 GLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIP 241
+A+ ARL R +MLDV + ++ AR +GL ++ +H LRNA +P++T + + I
Sbjct: 184 AFMSLAINARLLRPSMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIG 243
Query: 242 WLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIID 301
L GG ++ E +F WPG+G V AIF RDYPV+Q L++ V+ V+ N + D+ +D
Sbjct: 244 ELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALD 303
Query: 302 PRVR 305
PR+R
Sbjct: 304 PRIR 307
>sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442405|pir||H69668 oligopeptide transport system
permease protein oppB - Bacillus subtilis
>gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC
transporter (permease) [Bacillus subtilis]
Length = 311
Score = 213 bits (538), Expect = 2e-54
Identities = 108/309 (34%), Positives = 184/309 (58%), Gaps = 13/309 (4%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQL-----AKFRHQLGL 58
++I ++++ ++I +F++ +F ++ PG P F+ E++L A GL
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP-------FSGEKKLPPEIEANLNAHYGL 55
Query: 59 DRPLYIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
D+PL++QY+ ++ V DFG S +G V++LI+ + L A ++A G++F
Sbjct: 56 DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLF 115
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILP 177
G++AA+Y + DY V L +F +S+P F + +L +F +KLG+ P++G W + LP
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175
Query: 178 SLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMF 237
S+ L +A IARL+R++M++VL DYI TA+AKGL V +HA+RNAL+P+VTYM
Sbjct: 176 SIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMG 235
Query: 238 LQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITY 297
+ G+ + ET+FG PG+G V +I RDY V+ + + V+ ++ + D+ Y
Sbjct: 236 PMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLY 295
Query: 298 TIIDPRVRI 306
IIDPR+++
Sbjct: 296 GIIDPRIKL 304
>pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis
>gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus
subtilis]
Length = 311
Score = 211 bits (532), Expect = 8e-54
Identities = 107/309 (34%), Positives = 184/309 (58%), Gaps = 13/309 (4%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQL-----AKFRHQLGL 58
++I ++++ ++I +F++ +F ++ PG P F+ E++L A GL
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP-------FSGEKKLPPEIEANLNAHYGL 55
Query: 59 DRPLYIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
D+PL++QY+ ++ V DFG S +G V++LI+ + L A ++A G++F
Sbjct: 56 DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVLF 115
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILP 177
G++AA+Y + DY V L +F +S+P F + +L +F +KLG+ P++G W + LP
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175
Query: 178 SLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMF 237
S+ L +A IARL+R++M++VL DYI TA+AKGL + +HA+RNAL+P+VTYM
Sbjct: 176 SIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPALTVRHAIRNALLPVVTYMG 235
Query: 238 LQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITY 297
+ G+ + ET+FG PG+G V +I RDY V+ + + V+ ++ + D+ Y
Sbjct: 236 PMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLY 295
Query: 298 TIIDPRVRI 306
IIDPR+++
Sbjct: 296 GIIDPRIKL 304
>gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus
fulgidus] >gi|7449122|pir||G69470 dipeptide ABC
transporter, permease protein (dppB) homolog -
Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppB) [Archaeoglobus fulgidus]
Length = 354
Score = 209 bits (527), Expect = 3e-53
Identities = 118/330 (35%), Positives = 181/330 (54%), Gaps = 30/330 (9%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+II + L ++ + I+ F IL +IPGDP ++G+ EE L K RH+ GLD+P +
Sbjct: 25 YIITRFLMVIPTVLILLTIVFLILRIIPGDPITAMVGQKVPEEVLEKLRHEAGLDKPYHE 84
Query: 65 QYIDWMSKVLRGDFGTSLVQGV-PVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QYI+++ V GD G S++ G PV I TL+LT+ +I++ + G+ G +AA
Sbjct: 85 QYIEYLKGVFTGDLGKSMIWGKRPVIAEIMDHFPATLELTIFGFILSVLIGVATGSIAAF 144
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG---PGD---------- 170
+ + D + ++ ++ W G+LL ++FGV L +LPI G PG+
Sbjct: 145 RRGSKVDSGMRIYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIGGRITPGNTPETITGLYV 204
Query: 171 ---------------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLP 215
HL LP++TLG+ RL R N++DVL +D+I RA+G+
Sbjct: 205 LDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLIDVLSQDFIKAYRARGVR 264
Query: 216 ERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVV 275
R VV+ HA++NA IP+VT M LQ L GAV+TE+ F WPGMG L+ I RDY V
Sbjct: 265 NRKVVF-HAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPGMGTFLIERIEYRDYTSV 323
Query: 276 QAIVLIIGVLTVIANFLADITYTIIDPRVR 305
Q ++ V + + + D+ Y ++DPR+R
Sbjct: 324 QGAIVFYAVFVALISLVVDVIYALLDPRIR 353
>sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1074011|pir||E64184 oligopeptide transport system
permease protein oppB - Haemophilus influenzae (strain
Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792)
oligopeptide ABC transporter, permease protein (oppB)
[Haemophilus influenzae Rd]
Length = 306
Score = 208 bits (525), Expect = 5e-53
Identities = 115/305 (37%), Positives = 184/305 (59%), Gaps = 5/305 (1%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLY 63
++I K++L L +FI+ FSF ++ L PG P + E +A + L+ PLY
Sbjct: 3 KFIFKRLLEALPTLFILITFSFFLMRLAPGSP--FTSERAYPPEVMANIEAKYHLNEPLY 60
Query: 64 IQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
QY ++ + +GDFG S + V++LIA ++KL + A+ A V G+ G LAA
Sbjct: 61 KQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAA 120
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--PGDWRHLILPSLT 180
+ +++ +DYI+M+ ++ + MP F +L+LIF + LG LP G G ++ILP +
Sbjct: 121 LNQNSRWDYILMSFSMLGVIMPSFVFAPVLVLIFAIYLGWLPAGGWNGGTAMYMILPVAS 180
Query: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
L + VA IAR+ R +M++VL ++I TA+AKGL ++ KHALR AL+P++TY+
Sbjct: 181 LTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAF 240
Query: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
+ G++V E+VFG PGMG L V RDY +V ++ +++G LT++ N + DI Y II
Sbjct: 241 VGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAII 300
Query: 301 DPRVR 305
DP++R
Sbjct: 301 DPKIR 305
>sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|72438|pir||QREBOB oligopeptide transport system
permease protein oppB - Salmonella typhimurium
>gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306)
[Salmonella typhimurium]
Length = 306
Score = 206 bits (518), Expect = 4e-52
Identities = 108/306 (35%), Positives = 187/306 (60%), Gaps = 7/306 (2%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE-EQLAKFRHQLGLDRPL 62
++I+++ L + +FI+ SF ++ L PG P GE A E LA + L+ P+
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERALPPEVLANIEAKYHLNDPI 59
Query: 63 YIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
QY ++ ++ GDFG S + V++L+A + KL A+++A + G+ G++A
Sbjct: 60 MTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIA 119
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--PGDWRHLILPSL 179
A+ ++T +DY VM A+ + +P F + LL+++F + L LP G G + +ILP +
Sbjct: 120 ALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMV 179
Query: 180 TLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ 239
L L +A IAR+TR +M++VL ++I TARAKGLP R ++++HAL+ AL+P+++YM
Sbjct: 180 ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPA 239
Query: 240 IPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTI 299
+ G++V ET++G PG+G L V RDY +V ++ +++G LT++ N + D+ Y +
Sbjct: 240 FVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAV 299
Query: 300 IDPRVR 305
IDP++R
Sbjct: 300 IDPKIR 305
>pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 342
Score = 205 bits (516), Expect = 6e-52
Identities = 112/320 (35%), Positives = 188/320 (58%), Gaps = 17/320 (5%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+++K++ LI +F++S+ +F+I + GDP R L+G+ +E + R +LGL+ P I
Sbjct: 21 FLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDPFII 79
Query: 65 QYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
+Y +++ ++GD GTS P E+I +L TL+L A +I VF + G+ +A++
Sbjct: 80 KYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSAIH 139
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD------W------- 171
+LF IVM + +S+P F I+L+ +F ++LG P G G+ W
Sbjct: 140 PKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWXPSYGRGETVNLLGWESGFFTL 199
Query: 172 ---RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNA 228
RHL+LPS+ L + + RL R+ ML+VL +YI A+AKGLP + Y+HAL+N
Sbjct: 200 DGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALKNT 259
Query: 229 LIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVI 288
++P++T +QI + ++TETVF WPG G L + AI + D P++ A V+ +G++ V+
Sbjct: 260 MLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVV 319
Query: 289 ANFLADITYTIIDPRVRIMG 308
N + D+ Y +I+P V + G
Sbjct: 320 TNTIVDLLYGLINPTVNLTG 339
>pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 306
Score = 205 bits (515), Expect = 8e-52
Identities = 110/310 (35%), Positives = 183/310 (58%), Gaps = 15/310 (4%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE-----EQLAKFRHQLGL 58
++I K+I + + ++ SF ++ PG+P F++E E +A + GL
Sbjct: 3 KFIAKRIFEAIPTMLVLITISFFLMRYAPGNP-------FSSERPLPPEVMANINAKYGL 55
Query: 59 DRPLYIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
D+P+ QY+ +++ +++GDFG S + V+ELIA L ++K+ + A++ + G+
Sbjct: 56 DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--PGDWRHLI 175
G +AA+ ++T DY +M+ A+ + MP F L +LI IF ++ + P G G + ++
Sbjct: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175
Query: 176 LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTY 235
LP L + L VA AR+TR +M++ L ++I TARAKGL +V KHAL+ AL+P+V+Y
Sbjct: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
Query: 236 MFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADI 295
M + G+VV ET+FG PG+G L V A F RDY +V + ++IG L ++ N + DI
Sbjct: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
Query: 296 TYTIIDPRVR 305
IDP++R
Sbjct: 296 LLAYIDPKIR 305
>sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|98272|pir||S16648 dipeptide transport system
permease protein dppB - Bacillus subtilis
>gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus
subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB
[Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110)
dipeptide ABC transporter (permease) [Bacillus subtilis]
Length = 308
Score = 204 bits (513), Expect = 1e-51
Identities = 110/304 (36%), Positives = 183/304 (60%), Gaps = 5/304 (1%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLG-EFATEEQLAKFRHQLGLDRPLY 63
++IK+ ++ I +++ +F ++ +IPG P G A ++ L + H LD PL
Sbjct: 4 YMIKRFWAMAATILVITTLTFVLMKVIPGSPFNEERGTNEAVQKNLEAYYH---LDDPLI 60
Query: 64 IQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
QYI ++ ++ DFG S+ + V++++ + +L +TA +IA + GLV G++AA
Sbjct: 61 FQYIFYLKSIITFDFGPSIKKPSDSVNDMLERGFPVSFELGMTAIVIAVISGLVLGVIAA 120
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLG 182
+ ++ DY M+LAV +S+P F L LLI F V L + P + H++LP+ L
Sbjct: 121 LRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKLFPAATWTSPIHMVLPTAALA 180
Query: 183 LPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPW 242
+ +A+IARLTR++M++VL +DYI TA+AKGL ++ KHALRNAL+P++T + +
Sbjct: 181 VGPMAIIARLTRSSMVEVLTQDYIRTAKAKGLSPFKIIVKHALRNALMPVITVLGTLVAS 240
Query: 243 LFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDP 302
+ G+ V E +F PGMG V +I QRDYPV+ + V+ +I FL D+ Y ++DP
Sbjct: 241 ILTGSFVIEKIFAIPGMGKYFVESINQRDYPVIMGTTVFYSVILIIMLFLVDLAYGLLDP 300
Query: 303 RVRI 306
R+++
Sbjct: 301 RIKL 304
>pir||F72451 probable peptide transport system permease protein APE2258 -
Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1|
(AP000064) 339aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 339
Score = 203 bits (512), Expect = 2e-51
Identities = 121/331 (36%), Positives = 184/331 (55%), Gaps = 32/331 (9%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE-EQLAKFRHQLGLDRPLY 63
+ + + L+++ + I+ F +L +IPGDP LG + E+L R +LGLD+PL+
Sbjct: 10 YAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAIRERLGLDQPLW 69
Query: 64 IQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
QYID++ V+RGDFG S+ + G PV+ I R TL+LT+ +I++ V G+ G++AA
Sbjct: 70 RQYIDYLLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGSGVVAA 129
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWR---------- 172
++ L D ++ T ++ ++ WLG++L +F +KLGILP G D R
Sbjct: 130 -FRGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVVTGLY 188
Query: 173 ------------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGL 214
HLILPSLTLG+ V RL R ++ + L + + RA+GL
Sbjct: 189 VLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYRARGL 248
Query: 215 PERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPV 274
E + H LR +LIP +T M LQ L GGAV+TE F WPG+G+LLV I RDY
Sbjct: 249 RESRIAV-HMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRDYST 307
Query: 275 VQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
+Q + + + + + + DI Y I++PRVR
Sbjct: 308 IQGVTVFFAFMVGLVSLIVDIIYAIVNPRVR 338
>pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog -
Lyme disease spirochete >gi|2281460|gb|AAC46285.1|
(AF000366) oligopeptide permease homolog B [Borrelia
burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140)
oligopeptide ABC transporter, permease protein (oppB-1)
[Borrelia burgdorferi]
Length = 306
Score = 203 bits (510), Expect = 3e-51
Identities = 111/311 (35%), Positives = 185/311 (58%), Gaps = 17/311 (5%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQL-----AKFRHQLGL 58
++ +KKIL ++ + ++ F ++ + PG P F +E+ + A+ + L
Sbjct: 3 KFTLKKILGIIPTLLVIIFLCFFVMRMAPGSP-------FDSEKPIDPQVKARLMEKYHL 55
Query: 59 DRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
D+P YIQ +++ LRGD G SL + + VS+ I +L L V + II+ G+
Sbjct: 56 DKPFYIQAFYYITNALRGDLGPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPI 115
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG----PGDWRH 173
G+LAA+YK+T DYI+ ++A+ +S+P F +G +L F +K G+L SG G + +
Sbjct: 116 GILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSGWITERGGFSN 175
Query: 174 LILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLV 233
LILP +TL +P VA+ AR+ R +ML++++ D+I TARAKGL + +V KH LR A++P+V
Sbjct: 176 LILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIKHMLRGAMLPVV 235
Query: 234 TYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLA 293
+Y+ + G+VV E +F GMG + + RDYPV+ +L+ ++ +I+ ++
Sbjct: 236 SYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILIS 295
Query: 294 DITYTIIDPRV 304
DI Y I+DPRV
Sbjct: 296 DIIYKILDPRV 306
>dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 322
Score = 203 bits (510), Expect = 3e-51
Identities = 103/317 (32%), Positives = 175/317 (54%), Gaps = 16/317 (5%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPAR--YLLGEFATEEQLAKFRHQLGLDRPLY 63
II++ ++ +F++SV F I +PGDP Y ++E + R + GL+ P Y
Sbjct: 5 IIRRCFIMIPQLFLLSVIVFMIAQAMPGDPLTGFYQSNPNISQEVIDAQRERYGLNDPWY 64
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+QY+ W+ L+GDFG S Q +PV+E+I R+ T+ L++ I+ ++ + G+L+
Sbjct: 65 VQYVRWVGNALQGDFGDSYQQRIPVTEVIDNRIWNTIWLSLLTLIMTYMIAIPLGLLSGR 124
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG-------PGDW----- 171
Y TL D + + P F +L++ +FG +LG P G PG +
Sbjct: 125 YNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQPGTFGYVLS 184
Query: 172 --RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNAL 229
H++LP+ +L + + R+ ++D + DY+ TARA+G ER + KH RN+L
Sbjct: 185 KINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGASERRIYLKHLPRNSL 244
Query: 230 IPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIA 289
+P+ + ++ L GG + E +F +PGMG L + +I QRDY VV +VL+ GV +++
Sbjct: 245 LPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVVTTMVLLFGVASILG 304
Query: 290 NFLADITYTIIDPRVRI 306
L+DI +I+DPR++I
Sbjct: 305 ALLSDIILSIVDPRIKI 321
>sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442404|pir||B36263 oligopeptide transport system
permease protein oppB - Escherichia coli
>gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide
transport permease protein [Escherichia coli K12]
Length = 306
Score = 202 bits (509), Expect = 4e-51
Identities = 108/306 (35%), Positives = 185/306 (60%), Gaps = 7/306 (2%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE-EQLAKFRHQLGLDRPL 62
++I+++ L + +FI+ SF ++ L PG P GE E +A + L+ P+
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPI 59
Query: 63 YIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
QY ++ ++ GDFG S + V++L+A + KL A+ +A + G+ G++A
Sbjct: 60 MTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIA 119
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--PGDWRHLILPSL 179
A+ ++T +DY VM LA+ + +P F + LL++IF + L LP G G + +ILP +
Sbjct: 120 ALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMV 179
Query: 180 TLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ 239
L L +A IAR+TR +M++VL ++I TARAKGLP R ++ +HAL+ AL+P+++YM
Sbjct: 180 ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPA 239
Query: 240 IPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTI 299
+ G++V ET++G PG+G L V RDY +V ++ +++G LT++ N + D+ Y +
Sbjct: 240 FVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAV 299
Query: 300 IDPRVR 305
IDP++R
Sbjct: 300 IDPKIR 305
>gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus
pyogenes]
Length = 325
Score = 200 bits (504), Expect = 2e-50
Identities = 115/315 (36%), Positives = 174/315 (54%), Gaps = 15/315 (4%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDP--ARYLLGEFATEEQLAKFRHQLGLDRPLY 63
II KI+ + IF VSV +F +L P DP A T Q H GLD+P
Sbjct: 8 IIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHYGLDKPAL 67
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+QY W+ V++GD GTSLV PVS++I R + L +WI++ + G + G L+A
Sbjct: 68 VQYFIWLKNVIQGDLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAF 127
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPI--SGP-----------GD 170
++ L D +V + +S+P FW+G++ +LIF V+LG PI S P
Sbjct: 128 HQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIGTLSQDITLADR 187
Query: 171 WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALI 230
+HL+LP TL + +A + TR M+ VL +Y++ ARA+G + + H LRNA++
Sbjct: 188 VKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHHCLRNAIV 247
Query: 231 PLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIAN 290
P +T F LFGG+V+ E VF +PG+G+ L A + D P++ AIV+I + N
Sbjct: 248 PAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVFAGN 307
Query: 291 FLADITYTIIDPRVR 305
+ADI +II+P++R
Sbjct: 308 LIADILNSIINPQLR 322
>dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB.
[Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852)
Oligopeptide transport system permease protein OppB.
[Escherichia coli]
Length = 306
Score = 199 bits (502), Expect = 3e-50
Identities = 107/306 (34%), Positives = 184/306 (59%), Gaps = 7/306 (2%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE-EQLAKFRHQLGLDRPL 62
++I+++ L + +FI+ SF ++ L PG P GE E +A + L+ P+
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPI 59
Query: 63 YIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
QY ++ ++ GDF S + V++L+A + KL A+ +A + G+ G++A
Sbjct: 60 MTQYFSYLKQLAHGDFDPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIA 119
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--PGDWRHLILPSL 179
A+ ++T +DY VM LA+ + +P F + LL++IF + L LP G G + +ILP +
Sbjct: 120 ALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMV 179
Query: 180 TLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ 239
L L +A IAR+TR +M++VL ++I TARAKGLP R ++ +HAL+ AL+P+++YM
Sbjct: 180 ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPA 239
Query: 240 IPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTI 299
+ G++V ET++G PG+G L V RDY +V ++ +++G LT++ N + D+ Y +
Sbjct: 240 FVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAV 299
Query: 300 IDPRVR 305
IDP++R
Sbjct: 300 IDPKIR 305
>gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus
solfataricus]
Length = 343
Score = 199 bits (501), Expect = 4e-50
Identities = 117/335 (34%), Positives = 179/335 (52%), Gaps = 32/335 (9%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDP---ARYLLGEFATEEQLAKFRHQLGLDRP 61
+II++I++ I + ++ + F ++H+I +P AR G AT +L + Q GLD+P
Sbjct: 8 FIIRRIINAFITLILLIILVFIMIHIIAPNPLALARLYTGPHATYTELEQVAKQYGLDQP 67
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
LYIQ I+++ VL G+FG VPV LI L TL+L + A I++ V GL G +A
Sbjct: 68 LYIQIINYIINVLHGNFGIDPTYKVPVITLIGKYLPRTLELVIPATILSVVIGLFTGAIA 127
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP------------- 168
A ++ DY+V + + + P F + ++L L+ L +LP +G
Sbjct: 128 ASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIAYYLRLLPPTGTVNPVLTPPKSITP 187
Query: 169 ---------GDW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAK 212
GDW H++LP + + L ++ R+ RA+MLD +E D+ + K
Sbjct: 188 FPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGIVTRIARASMLDYMESDFAKLSLMK 247
Query: 213 GLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDY 272
GL R VVY LRNA IPLVT + L + GAVV E +F + GMG + AI DY
Sbjct: 248 GLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAVVIEDIFQYHGMGYFITQAIESLDY 307
Query: 273 PVVQAIVLIIGVLTVIANFLADITYTIIDPRVRIM 307
+ +I+G+ +IAN +ADI Y ++DPRVRI+
Sbjct: 308 TSILGTTIIVGIAIIIANLIADILYGVLDPRVRIV 342
>gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes]
Length = 309
Score = 197 bits (496), Expect = 1e-49
Identities = 102/307 (33%), Positives = 178/307 (57%), Gaps = 3/307 (0%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLY 63
++ +K++L +LI +FI++ +F ++ +PG P Y E ++EQ+ + GL+ +
Sbjct: 3 KYTLKRVLYMLITLFIIASVTFVLMKFLPGTP--YRNQEKLSDEQIHMTNEKYGLNDSIP 60
Query: 64 IQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY ++M+ +++GD G S + PVSE+++ + +++L + A +FG++ G++AA
Sbjct: 61 VQYFNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAMAFGVIFGILLGVIAA 120
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLG 182
+Y++ DY +A+ S+P F +L G KL I P++G G + ILP+ L
Sbjct: 121 MYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAGWGTFADTILPAFALA 180
Query: 183 LPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPW 242
+ +A AR R ++DV DY++ A+AKG V KHA+RNALIPL+T +
Sbjct: 181 MFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAVKHAIRNALIPLITVLGPLSVA 240
Query: 243 LFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDP 302
L G++V E ++ PG+G+ V +I DYPV+ ++ V+ V + DI Y +IDP
Sbjct: 241 LMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTILFAVMLVFVILVVDILYGLIDP 300
Query: 303 RVRIMGG 309
R+R+ GG
Sbjct: 301 RIRVSGG 307
>pir||D71014 probable dipeptide transport system permease protein dppB -
Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1|
(AP000006) 332aa long hypothetical dipeptide transport
system permease protein dppB [Pyrococcus horikoshii]
Length = 332
Score = 197 bits (495), Expect = 2e-49
Identities = 119/332 (35%), Positives = 186/332 (55%), Gaps = 34/332 (10%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPAR-YLLGEFATEEQLAKFRHQLGLDRP 61
K+++I+++L+ + I V++ F I + IP DPA+ + GE AT++ + + LDRP
Sbjct: 5 KKFLIRRLLTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATQQAIELIKKMYHLDRP 64
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQ---GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFG 118
Y QY+ +++G +++ P+ + R TL+L + A+I + G+ G
Sbjct: 65 WYDQYVF----LIKGLIANTIIDPRTSNPIMYDVGKRFPVTLQLAIIAFIFILIIGIPLG 120
Query: 119 MLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP---------- 168
+++A+ ++T D +V A+ +S P FWLG L+I IF VK + I+G
Sbjct: 121 IISALKRNTWVDTVVRIFALLGVSTPAFWLGYLMIYIFFVKYKVTTIAGVPPMPKPITYV 180
Query: 169 --------GDW----RHLI---LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKG 213
G++ +HL LP TLG + V AR R + L+ L DY++ +AKG
Sbjct: 181 PMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVLFLKAKG 240
Query: 214 LPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYP 273
+P +M VY+HAL+NAL+P+VT + LQ L GG +TETVFG PGMG+ V +I D+P
Sbjct: 241 VP-KMRVYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQSIQNLDFP 299
Query: 274 VVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
VV AI I ++ V N + D+ Y IIDPRVR
Sbjct: 300 VVIAITFIYAIIYVTINLIVDVLYAIIDPRVR 331
>pir||S77118 oligopeptide transport system permease protein appB - Synechocystis
sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 326
Score = 197 bits (495), Expect = 2e-49
Identities = 119/317 (37%), Positives = 181/317 (56%), Gaps = 21/317 (6%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAK-----FRHQLGLDR 60
I K++ +I + +S+ FS+L L PG+P LGE AT +++ R LGLD+
Sbjct: 13 ICKRLAIAVITLLGISLVIFSLLALAPGNP----LGELATNPSISQEVRDNLRRSLGLDQ 68
Query: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
L I+Y+ W+ +L+GD G S PV +LI RL TL L TA++I+ + G+
Sbjct: 69 ALPIRYLKWLWSLLQGDLGYSFTSRSPVIDLIGQRLPTTLWLMGTAYLISLAIAIPLGVT 128
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPI------------SGP 168
AA+Y+ ++ ++ +++ S+P F G+L ILIF V+L LP S
Sbjct: 129 AALYRGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWLPFIYDSTLTVDSMASLG 188
Query: 169 GDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNA 228
R L++P L Q AVI R R+ L+ L ++YI TA AKGL ++ H L+NA
Sbjct: 189 TQIRQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKGLGTWGMLKNHLLKNA 248
Query: 229 LIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVI 288
+PL+T + L +P +F GA+VTE VF PG+G LL+ +I++ D PVV A+ + VL V
Sbjct: 249 SLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTPVVMAVTFLYAVLIVF 308
Query: 289 ANFLADITYTIIDPRVR 305
+ LAD+ Y ++DPR+R
Sbjct: 309 FSSLADLIYQLVDPRIR 325
>gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene
[Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1|
(AB039932) hypothetical ABC-transporter gene~similar to
agaB gene [Agrobacterium rhizogenes]
>gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical
ABC-transporter gene~similar to agaB gene [Agrobacterium
rhizogenes]
Length = 319
Score = 197 bits (495), Expect = 2e-49
Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 23/313 (7%)
Query: 11 LSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQYIDWM 70
L +L+ IFI+ F++L ++PGDPAR ++G A + +A +LGLDR + +Q++ ++
Sbjct: 9 LIILLVIFII----FTLLRVVPGDPARLIVGGMAPDAVVAMKAKELGLDRAIPLQFVSYL 64
Query: 71 SKVLRGDFGTSLV-------------------QGVPVSELIAGRLSYTLKLTVTAWIIAW 111
+ GD GTS V + V +LI G L TL+L A +IA
Sbjct: 65 GHLATGDLGTSFVRPKSGASLAGSAYNDPTREERAKVLDLILGTLPMTLQLAAVALVIAL 124
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW 171
+ + G+ +Y+ D + + L F+S P FWLGI+L L VKL +LP G +
Sbjct: 125 LVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFWLGIVLTLFLSVKLRVLPAIGYNGF 184
Query: 172 RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIP 231
+ ILP++ L + I R ++ VL +D+I A +GL ++ H L N+ +P
Sbjct: 185 EYTILPAIVLAVEIAPFILRTLTVSVAQVLREDFIQLAAVRGLSRGRTIFSHVLGNSAVP 244
Query: 232 LVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANF 291
L+ + +Q+ L GG +V E +F +PG+G L + A+ QRD+P++Q + + I V+ V+ N
Sbjct: 245 LINLLGVQLGMLLGGVLVVEFIFDYPGLGLLTINAVQQRDFPLIQGVAIFISVMFVVINI 304
Query: 292 LADITYTIIDPRV 304
L D+ IDPR+
Sbjct: 305 LVDLIAMTIDPRL 317
>emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB)
related protein [Thermoplasma acidophilum]
Length = 343
Score = 196 bits (493), Expect = 3e-49
Identities = 115/335 (34%), Positives = 176/335 (52%), Gaps = 33/335 (9%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDP---ARYLLGE-FATEEQLAKFRHQLGLDR 60
+II++ + + + I+ VF F+++H+I +P AR G A++ +L + GL+
Sbjct: 8 FIIRRAIYAIFTLLILIVFIFTLIHIIAPNPLALARLYAGNPHASQSELIGIEKKYGLNL 67
Query: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
P+Y Q I+++ V G+ G + PV +LI L TL+ +T +++ + GL G
Sbjct: 68 PIYDQVINYIKDVFIGNLGYDYLHDQPVLKLIGEYLPITLEFVLTGIVLSVIIGLFTGAY 127
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG------------- 167
AA + DY + L + SMP F L +L L L +LP +G
Sbjct: 128 AAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYIAYDLKLLPATGMVNPTLKPPPNVL 187
Query: 168 ---------PGDW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARA 211
DW H+ILP+L++ L VI RLTR+ MLD+++ DY
Sbjct: 188 AFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFGVITRLTRSTMLDIMDMDYFRLTIM 247
Query: 212 KGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRD 271
KG+P R VY ALRNA IPLVTY+ L + GGAVV E +F + GMG +V A++ D
Sbjct: 248 KGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGAVVIEDIFSYHGMGYYIVQAVYNLD 307
Query: 272 YPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
YP + +II + ++AN +AD+ Y I+DPRVR+
Sbjct: 308 YPGILGTTIIIAIAVIVANLVADVLYGILDPRVRL 342
>pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 327
Score = 196 bits (492), Expect = 4e-49
Identities = 111/327 (33%), Positives = 182/327 (54%), Gaps = 31/327 (9%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEF---------ATEEQLAKFRHQ 55
+I++++++ I ++I+S+ SF I+ L PGD + + AT E L K Q
Sbjct: 4 YILRRLITAFITLWIISIISFVIIQLPPGDFLTSYIAQLKVSGEDVDIATIEALKK---Q 60
Query: 56 LGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGL 115
GLD+P+Y+QY+ W+ +L GDFG S PV+EL+ RL T+ + + I +W+FG
Sbjct: 61 YGLDKPIYVQYLKWLWGILHGDFGYSFSWKKPVNELLWNRLGVTVLVATLSLIFSWIFGF 120
Query: 116 VFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGV-KLGILPISGPGDWR-- 172
+ GM +AV+ +++ DY+ L +++P F L LIL++G+ L + +SG +
Sbjct: 121 IIGMYSAVHPYSIGDYLATILGYIGLAVPNFLLA--LILMWGIYSLTGINLSGLHSVKYL 178
Query: 173 --------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERM 218
HL +P L LG +A + R RAN+LD L K Y+ A +KGLPE
Sbjct: 179 NTPMTIDKFLDILNHLWIPVLVLGTSGMAGLIRTLRANLLDELHKPYVEAALSKGLPENK 238
Query: 219 VVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAI 278
V +K+ LR A+IP ++ + +PW+F GA +T V P +G LL+ A+ +D + ++
Sbjct: 239 VFWKYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSVGPLLLNALKNQDMYLAGSL 298
Query: 279 VLIIGVLTVIANFLADITYTIIDPRVR 305
V+ + TVI ++DI +DPR+R
Sbjct: 299 VMFLSFFTVIGTLISDILLAWVDPRIR 325
>gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]
Length = 309
Score = 196 bits (492), Expect = 4e-49
Identities = 99/307 (32%), Positives = 178/307 (57%), Gaps = 3/307 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+++K+ + + + +F+++ +F ++ L+PG P + E + Q + GL+ P+ +
Sbjct: 4 YVLKRFVYMALTLFLITTLTFFLMKLLPGSPLKNQ--EKLSPAQKEIILEKYGLNDPVPV 61
Query: 65 QYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QY ++ + +GD G S PV+++I R+ + +L + A I+ GL+ G++AA+
Sbjct: 62 QYARYLGNLAKGDLGVSFQYDNRPVTDMIVDRIGPSAQLGLQAIILGTFIGLILGIVAAL 121
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGL 183
+T DY ++V MS+P F LL GVKLG P++ ++P++ L +
Sbjct: 122 RNNTWVDYGATIISVLGMSVPSFVFAALLQYFVGVKLGWFPVAFWKGPEFTVMPTIALSM 181
Query: 184 PQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWL 243
+A IAR +RA +++V++ DYI+TA+AKG+ + +++ KHALRNALIP+VT + + L
Sbjct: 182 AVIATIARFSRAELIEVMQADYILTAKAKGISQGVIIVKHALRNALIPVVTILGPMVAAL 241
Query: 244 FGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPR 303
G +V E ++ PG+G V +I DY V+ + + ++ F+ DI Y IIDPR
Sbjct: 242 ITGTLVIEQIYAVPGLGEQFVKSITVNDYTVIMGTTIFYSAIFILVIFIVDILYGIIDPR 301
Query: 304 VRIMGGE 310
+R+ GG+
Sbjct: 302 IRLAGGK 308
>gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 311
Score = 194 bits (489), Expect = 9e-49
Identities = 102/306 (33%), Positives = 178/306 (57%), Gaps = 5/306 (1%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE----EQLAKFRHQLGLD 59
++I+K+I + + +VS +F + ++ +PA +L T E +A+ + G +
Sbjct: 3 KFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYGFN 62
Query: 60 RPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
PL IQY +W+ + ++ +FGTS + G PV+E I TLKLT+ + ++ + ++ G+
Sbjct: 63 DPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIILGV 122
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSL 179
++A+ + D + ++A F ++P +W+ +LI+ VKL ILP SG ILP +
Sbjct: 123 VSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILPVI 182
Query: 180 TLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ 239
+ + + R R +M++ L +DY++ RA G+ + + + H LRNAL V+ +
Sbjct: 183 VITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGV-KSITLMLHVLRNALQVAVSIFCMS 241
Query: 240 IPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTI 299
IP + GG VV E +F WPG+G L + AI + D+PV+QA VLI+ VL ++ N LADI +
Sbjct: 242 IPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINAL 301
Query: 300 IDPRVR 305
++PR+R
Sbjct: 302 LNPRLR 307
>emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 307
Score = 194 bits (488), Expect = 1e-48
Identities = 106/304 (34%), Positives = 177/304 (57%), Gaps = 5/304 (1%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLA-KFRHQLGLDRPLY 63
++++++L + IP+FI + ++ + GDP L G+ + A + RH+ GLD+P++
Sbjct: 4 YVVRRLLQM-IPVFIGATLLIFLMVNVMGDPIAGLCGDRECDPATAAQLRHEFGLDQPVW 62
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QY +M V GDFGT+ G PV+EL+ T++LT+ A + V G++ G+L +
Sbjct: 63 QQYATYMGNVFTGDFGTAF-NGQPVTELMGTAFPVTIRLTIVAILFEIVVGIILGVLTGL 121
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILP--ISGPGDWRHLILPSLTL 181
+ D V+ L + +S+P F G+LL L+ GVK G + +S + LI+P L L
Sbjct: 122 RRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGWIDPAVSSEAAFGELIVPGLVL 181
Query: 182 GLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIP 241
+A + RLTR ++ + DY+ TA AKGLP V+ +H LRN+LIP+VT++ I
Sbjct: 182 ASVSLAYVTRLTRTSIAENRRSDYVRTAIAKGLPRHRVITRHLLRNSLIPVVTFIGTDIG 241
Query: 242 WLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIID 301
L GGA+VTE +F G+G L I +++ V V ++ ++ ++AN + D+ Y ++D
Sbjct: 242 ALMGGAIVTERIFNIHGVGYQLYQGILRQNTQTVVGFVTVLVLVFLVANLVVDLLYAVLD 301
Query: 302 PRVR 305
PR+R
Sbjct: 302 PRIR 305
>pir||E70343 transporter (OppBC family) - Aquifex aeolicus
>gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC
family) [Aquifex aeolicus]
Length = 327
Score = 194 bits (487), Expect = 2e-48
Identities = 113/318 (35%), Positives = 177/318 (55%), Gaps = 18/318 (5%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYL-LGEFATEEQLAKFRHQLGLDRPL 62
++I+ ++L + + V+ SF I+ L PGD L L + E + + +H GLD+PL
Sbjct: 3 KFILFRVLQAIPTLLGVTFLSFLIIKLAPGDYLDQLRLNPQISPETIERLKHLYGLDKPL 62
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY W+ L D G S PV+ELI R+ TL L+V++ + AW+ + G LAA
Sbjct: 63 LVQYFLWLKNALFFDLGYSFQYHAPVAELILERIPNTLLLSVSSALFAWLLSIPLGTLAA 122
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD------------ 170
+++LFD V+ + FMS+P F+L LL L F K GILP+ G
Sbjct: 123 FKENSLFDRFVVGFSYTFMSVPSFFLAFLL-LFFASKTGILPVGGMQSPNFEQLSIPEKV 181
Query: 171 ---WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRN 227
+HLI+PSLTLGL +A + RL R+++L++L + +AKG+ +V +H L+N
Sbjct: 182 LDILKHLIIPSLTLGLVSLASLTRLVRSSVLEILSSPMVTMLKAKGVGTFTLV-RHVLKN 240
Query: 228 ALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTV 287
A+ P T + +I L GA + E + GWPGMG L++ A+ +D +V + I ++ +
Sbjct: 241 AMNPFTTLLGYEIASLISGAALIEIIVGWPGMGMLMLNAVLSQDLFLVMGGLYIGTIMLL 300
Query: 288 IANFLADITYTIIDPRVR 305
+ N +AD+ IDPRVR
Sbjct: 301 VGNLIADLLLAYIDPRVR 318
>pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 337
Score = 193 bits (486), Expect = 2e-48
Identities = 106/319 (33%), Positives = 174/319 (54%), Gaps = 17/319 (5%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLL-GEFATEEQLAKFRHQLGLDRPLY 63
+++++++ LI + + S+ SF+I+ L PG L + E L + + Q GLD+P Y
Sbjct: 15 YVVQRLIEGLITLLLASLLSFAIVQLAPGSYLDTLQQNPKISPETLQQLKVQFGLDQPWY 74
Query: 64 IQYIDWMSKVL-RGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY W+++V+ R +FG S V V+ L+ R+ TL L +T+ I+ W + G++ A
Sbjct: 75 VQYWRWLTQVVTRFNFGESFVYNRSVASLLIERIPATLLLAITSIILTWAIAIPLGIVGA 134
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPIS-------GPGDWRH-- 173
V ++T D + ++ P F +LL+ + +LP+ W H
Sbjct: 135 VQQNTFIDRSLRVISYIGQGFPSFITALLLLFLAQSVSPLLPVGDMTSIDFAEFSWPHKV 194
Query: 174 ------LILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRN 227
+ILP+L L + A + RL R +LDVL +DYI TARAKGLPE V+Y HALRN
Sbjct: 195 WDVAWHMILPTLALSITSFAGLQRLMRGQLLDVLRQDYIQTARAKGLPENRVIYVHALRN 254
Query: 228 ALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTV 287
A+ PL+T + + L GA + E F WPG+G L++ A+ +D +V +++ L +
Sbjct: 255 AINPLITILGFEFASLLSGAFIAEFFFNWPGLGRLILQAVTAQDLYLVMGSLMMGATLLI 314
Query: 288 IANFLADITYTIIDPRVRI 306
+ N LAD+ DPR+++
Sbjct: 315 VGNLLADLLLKFTDPRIQL 333
>dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 310
Score = 192 bits (483), Expect = 5e-48
Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 5/305 (1%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA----TEEQLAKFRHQLGLDR 60
+++K++ S++ +FI+S +F ++L P DPA +L T+E +A+ + +LGLD+
Sbjct: 4 YVMKRLFSVIPLLFIISFLTFVFINLSPLDPAEVVLQAQGVPTITDELIAQTKQELGLDQ 63
Query: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
P IQY W+ L+ DFG S V PVS +I TLKLT+ + I+ V ++ G++
Sbjct: 64 PFLIQYFHWLLACLQLDFGHSYVTKEPVSAIIGPAFFNTLKLTLVSSIVIIVLSILLGVI 123
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT 180
A+ D + + M +P + L +I F VKL +LP SG ++ ILP
Sbjct: 124 CAMKGGKAIDKSIRGFSFLLMGIPSYLLASFMIWYFSVKLDLLPTSGLDSYQSYILPVTV 183
Query: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
+ V + R R +ML L +D+++ RA G+ E+ V H LRN+L ++ + I
Sbjct: 184 ITASYVGIYFRSVRNSMLSHLNEDFVLYGRACGISEKKVTI-HILRNSLQVAISIFCMGI 242
Query: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
P + GG VV E VF WPG+G+L V +I RD+P++QA VLI+ V V N +DI +
Sbjct: 243 PTILGGTVVVENVFAWPGLGSLSVKSILNRDFPIIQAYVLILAVSFVFFNTFSDIINAAM 302
Query: 301 DPRVR 305
+P+ R
Sbjct: 303 NPKQR 307
>pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 -
Pyrococcus abyssi (strain Orsay)
>gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 332
Score = 192 bits (482), Expect = 6e-48
Identities = 116/332 (34%), Positives = 180/332 (53%), Gaps = 34/332 (10%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPAR-YLLGEFATEEQLAKFRHQLGLDRP 61
K+++I++IL+ + I V++ F I + IP DPA+ + GE AT+E + + LD P
Sbjct: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQ---GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFG 118
Y QY+ +++G +++ PV I R T +L + A+ + G+ G
Sbjct: 65 WYDQYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
Query: 119 MLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW------- 171
+++A+ +++ D +V A+ +S P FWLG L++ IF VK + I+G +
Sbjct: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
Query: 172 ---------------RHLI---LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKG 213
+HL LP TLG + V AR R + L+ L DY+ +AKG
Sbjct: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
Query: 214 LPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYP 273
+P +M +Y+HAL+NAL+P+VT + LQ L GG +TETVFG PGMG+ V AI D+P
Sbjct: 241 VP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
Query: 274 VVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
VV A+ I ++ V N + DI Y +IDPRVR
Sbjct: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
>pir||B70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1|
(AL022121) dppB [Mycobacterium tuberculosis]
Length = 308
Score = 192 bits (482), Expect = 6e-48
Identities = 103/305 (33%), Positives = 176/305 (56%), Gaps = 5/305 (1%)
Query: 5 WIIKKILSLLIPIFI-VSVFSFSILHLIPGDPARYLLGEFA-TEEQLAKFRHQLGLDRPL 62
W + + +++++P+F+ ++ + ++ L+PGDP L G+ T A+ R LD P
Sbjct: 3 WYVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPF 62
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY+ ++ +L GD G + G+PVS ++A T++L + A + V G+ FG++A
Sbjct: 63 LVQYLRYLGGILHGDLGRAY-SGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAG 121
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPIS--GPGDWRHLILPSLT 180
+ + +FD V+ + +++P F LG L +FGV+L I P++ L+LP +
Sbjct: 122 LRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTVGERASVGRLLLPGIV 181
Query: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
LG A + RLTR+ + DY+ TA AKGL VV H LRN+LIP+VT++ +
Sbjct: 182 LGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADL 241
Query: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
L GGA+VTE +F G+G +L A+ +++ P V +IV ++ ++ +I N L D+ Y +
Sbjct: 242 GALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAAL 301
Query: 301 DPRVR 305
DPR+R
Sbjct: 302 DPRIR 306
>pir||A75142 oligopeptide transport system permease protein appb PAB0628 -
Pyrococcus abyssi (strain Orsay)
>gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus
abyssi]
Length = 334
Score = 189 bits (476), Expect = 3e-47
Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 24/325 (7%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQ-----LG 57
K ++++K + ++ F F I ++PGDP LL FAT + K+ H G
Sbjct: 6 KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
Query: 58 LDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
LD+PL+ QYI + VL GD G S+ PV+E++ L Y L L A + +W G
Sbjct: 66 LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
Query: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----- 171
G LA K+ D +M + F + PYFW ILL +F KLG PISG +
Sbjct: 126 LGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
Query: 172 ----------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221
H LP L+L + Q+ A R ++ +E DYI + G+ E++++
Sbjct: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM- 242
Query: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281
KHA +NA++P VT + LQ+ L G V + VF +PG+G +L+ I +DY ++Q L+
Sbjct: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
Query: 282 IGVLTVIANFLADITYTIIDPRVRI 306
I + ++ANF+ D+ Y IIDPRVRI
Sbjct: 303 IILTVLVANFVIDLLYAIIDPRVRI 327
>pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 328
Score = 188 bits (473), Expect = 7e-47
Identities = 106/323 (32%), Positives = 184/323 (56%), Gaps = 22/323 (6%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDP-ARYLL-----GEFATEEQLAKFRHQLGL 58
+I K++L + +F++S+ SF I+ L PGD Y++ GE + L + + GL
Sbjct: 4 YIAKRVLYAIPLLFVISIVSFIIIELPPGDYLTTYVMTLRQSGETIDQAALEVLKKRYGL 63
Query: 59 DRPLYIQYIDWMSKVL-RGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
D+P+ ++Y W+ ++ +GDFG S + PVS+L+ R+ +T+ ++V + AWVFG +
Sbjct: 64 DKPVIVRYFYWIGNIITKGDFGYSFMWEKPVSDLLNQRVWWTILISVLSTAFAWVFGFLI 123
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIF----GVKLGIL----PISGPG 169
G+ + +++++ DY+ L ++ P F L ++L+ GV LG L P
Sbjct: 124 GVYSGTHQYSIGDYVFTVLGYIGLATPNFLLALILLWFMFVTTGVSLGGLFSPEYAGAPW 183
Query: 170 DW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYK 222
W +H+ +P + LG +A + R+ RAN+LD + K Y++ ARA+G+PER +V+K
Sbjct: 184 SWAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDEINKPYVVAARARGVPERELVWK 243
Query: 223 HALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLII 282
+ LR A+IP + +P + GAVVT V P +G LL+ A+ +D + ++VLI+
Sbjct: 244 YPLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVGTLLLDALTSQDMYLAGSLVLIL 303
Query: 283 GVLTVIANFLADITYTIIDPRVR 305
V T+I ++DI +DPR+R
Sbjct: 304 SVFTIIGTLISDILLAWLDPRIR 326
>pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 341
Score = 188 bits (473), Expect = 7e-47
Identities = 107/315 (33%), Positives = 179/315 (55%), Gaps = 12/315 (3%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGD-----PARYLLGEFATEEQ------LAKF 52
++++K++L++ I + +V V ++ ++ L PG+ R + T + L F
Sbjct: 26 KFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQATLKGF 85
Query: 53 RHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVP-VSELIAGRLSYTLKLTVTAWIIAW 111
+ GL+ PL+ Q + ++ + FG S + +LI + T L +++ + A
Sbjct: 86 EERYGLNNPLWKQILMYLKGAVVFKFGPSFSDPARNIEDLIKEKFPITFTLALSSILFAL 145
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW 171
V G+ G+LAA+ K+T DY MT++V +++P + + + LILIF + LG LP SG
Sbjct: 146 VVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVVAVFLILIFSIYLGWLPTSGWEGI 205
Query: 172 RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIP 231
R ILP++ L L +A +AR TR ++LD L +D+I TA AKG +R V+ KHALR ++IP
Sbjct: 206 RTKILPTIALALGPLASVARFTRVSLLDTLNQDFIRTAYAKGGDDRTVIMKHALRPSMIP 265
Query: 232 LVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANF 291
LVT + Q+ +L G V E +F PG+G L A RDYP++ I+ + +I N
Sbjct: 266 LVTIVGPQMAYLMVGTVWVENIFRIPGLGQLFANAAVTRDYPLLVTSTFILALTVMIMNL 325
Query: 292 LADITYTIIDPRVRI 306
+ D+ Y I+DPR+++
Sbjct: 326 IVDVLYAILDPRIKL 340
>pir||B71163 probable oligopeptide transport system permease protein AppB -
Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1|
(AP000002) 330aa long hypothetical oligopeptide
transport system permease protein AppB [Pyrococcus
horikoshii]
Length = 330
Score = 187 bits (470), Expect = 2e-46
Identities = 106/323 (32%), Positives = 177/323 (53%), Gaps = 24/323 (7%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA-----TEEQLAKFRHQL-G 57
+++ +KI+ ++ ++ + L+PGDP + ++ E L +F QL G
Sbjct: 5 DYLKRKIIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLRFYEQLYG 64
Query: 58 LDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
L++PLY+Q++++ + +GD G S++ PVS L+ L Y + + + A +++W+ G
Sbjct: 65 LNKPLYVQFVNFWVALFKGDLGYSILYRAPVSRLLKNALPYDIAILLPAIVLSWLIGNWL 124
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD------- 170
G A K+ +D +M L F SMPYFW +LL+ + GVK GILP G
Sbjct: 125 GAFAG--KNKKYDKYMMPLFYFLASMPYFWFAMLLVYLVGVKAGILPYQGAYSPDLIPTF 182
Query: 171 --------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYK 222
+H I+P L+L + + A R ++ LE DY+ A G E+++ K
Sbjct: 183 SLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLMT-K 241
Query: 223 HALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLII 282
HA +NA++P +T + LQ+ + GA+ TE VF +PG+G LL+ A +DY ++Q L+I
Sbjct: 242 HAYKNAILPQITGLALQLGLMVAGAIATEIVFNYPGVGVLLMKAAMSQDYFLLQGGFLMI 301
Query: 283 GVLTVIANFLADITYTIIDPRVR 305
+ ++ANF+ DI Y +IDPRVR
Sbjct: 302 VISVLVANFVIDIVYALIDPRVR 324
>sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C
>gi|7442425|pir||G70771 probable peptidetransport system
permease - Mycobacterium tuberculosis (strain H37RV)
>gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium
tuberculosis]
Length = 325
Score = 187 bits (469), Expect = 2e-46
Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 23/323 (7%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQ--LAKFRHQLGLDRPL 62
++ +++L+ L+ + + S ++ + L P L+ Q + H LGLDRP+
Sbjct: 4 YLARRLLNYLVLLALASFLTYCLTSLA-FSPLESLMQRSPRPPQAVIDAKAHDLGLDRPI 62
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+Y +W+S +RGDFGT++ G PV + R+ +L+L V + V G+V G A
Sbjct: 63 LARYANWVSHAVRGDFGTTIT-GQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWGA 121
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLIL------------IFGVKLGILPISGPGD 170
+ ++ L D ++ TLA+ +S P F + LLIL +F P G
Sbjct: 122 IRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGGV 181
Query: 171 W-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKH 223
W +HLILPSLTL L A +R R MLDVL +D+I TARAKGL R + KH
Sbjct: 182 WDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLKH 241
Query: 224 ALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIG 283
LR ALIP+ T + L GAV E +FGW GMG +V I +D +V AI + G
Sbjct: 242 GLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFSG 301
Query: 284 VLTVIANFLADITYTIIDPRVRI 306
+ ++A L+D+ Y +DPRVR+
Sbjct: 302 AVVLLAGLLSDVIYAALDPRVRV 324
>pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 338
Score = 185 bits (465), Expect = 6e-46
Identities = 104/328 (31%), Positives = 177/328 (53%), Gaps = 26/328 (7%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQL---------AKFRH 54
++++++ + LL+ + + F + IPG+P +L + Q
Sbjct: 8 KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSGLSRVAQANPEAIRAAERTLME 67
Query: 55 QLGLDRPLYIQYIDWMSKVLRGDFGTSLV-QGVPVSELIAGRLSYTLKLTVTAWIIAWVF 113
+ GL +P Y+QY ++++K LRGD GTS+ V +LI + +TL L + A I+AW+
Sbjct: 68 EFGLGKPWYVQYFEFITKALRGDLGTSITFYPRKVIDLIIPVIPWTLILLLPATIVAWIL 127
Query: 114 GLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD--- 170
G G LAA ++T D V+T ++ +PY+WLG++ I +FGVKLG LP+ G
Sbjct: 128 GNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLFGVKLGWLPVQGAYSQGT 187
Query: 171 -----W-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERM 218
W +H I+P ++ + + A R ++ L DY M + G+ ++
Sbjct: 188 IPNLSWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYELGSDYAMFSEYLGMKDKR 247
Query: 219 VVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAI 278
+ +K+ RN+L+P +T + L + + GGA++TE VF +PG G LL A+ DYP++Q I
Sbjct: 248 I-FKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGYLLFRALTTLDYPLIQGI 306
Query: 279 VLIIGVLTVIANFLADITYTIIDPRVRI 306
+I+ +ANF+ D Y +IDPR+R+
Sbjct: 307 FVILIASIYLANFIVDFLYALIDPRIRL 334
>pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 -
Pyrococcus abyssi (strain Orsay)
>gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 330
Score = 185 bits (465), Expect = 6e-46
Identities = 108/325 (33%), Positives = 175/325 (53%), Gaps = 24/325 (7%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA-----TEEQLAKFRHQL- 56
K+++ +KI+ + ++ + L+PGDP + ++ E L KF L
Sbjct: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
Query: 57 GLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
GL++PLY+Q+I++ +LRGD G S++ VS +I L Y + + A +++W+ G
Sbjct: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
Query: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----- 171
G LA K+ +D +M + F S+PYFW ++L+ GVKL I P G
Sbjct: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
Query: 172 ----------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221
+H ILP L+L + + A R ++ LE DY+ A G E+++
Sbjct: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT- 240
Query: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281
KHA RNA++P VT + LQ+ + GA+ TE VF +PG+G LL+ A +DY ++Q L+
Sbjct: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
Query: 282 IGVLTVIANFLADITYTIIDPRVRI 306
+ + ++ANF+ DI Y +IDPRVR+
Sbjct: 301 VIIAVLVANFIIDIVYALIDPRVRV 325
>gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 311
Score = 184 bits (462), Expect = 1e-45
Identities = 97/309 (31%), Positives = 173/309 (55%), Gaps = 13/309 (4%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQL-----AKFRHQLGL 58
++I ++++ ++I +F++ +F ++ PG P F+ E++L A GL
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP-------FSGEKKLPPEIEANLNAHYGL 55
Query: 59 DRPLYIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
D+PL++QY+ ++ V DFG S +G V++LI+ + L A ++A G++F
Sbjct: 56 DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLF 115
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILP 177
G++AA+Y + DY V L +F +S+P F + +L +F +KLG+ P++G W + LP
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175
Query: 178 SLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMF 237
S+ L +A IARL+R++M++VL DYI TA+AKGL + + L+ +
Sbjct: 176 SIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRLLHILG 235
Query: 238 LQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITY 297
+ G+ + ET+FG PG+G V +I RDY V+ + + V+ ++ + D+ Y
Sbjct: 236 PMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLY 295
Query: 298 TIIDPRVRI 306
IIDPR+++
Sbjct: 296 GIIDPRIKL 304
>pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 345
Score = 184 bits (462), Expect = 1e-45
Identities = 115/341 (33%), Positives = 174/341 (50%), Gaps = 39/341 (11%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDP--ARYL---LGEFATEEQLAKFRHQLGLD 59
+II+++L L + + V+ FS++ + D A Y+ + + T EQ+ + + GL+
Sbjct: 4 YIIRRLLLLPLILLGVTFIVFSMIQSLGPDKLLAAYVNPNMLDKLTPEQMDALKEKYGLN 63
Query: 60 RPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
++Y+ W++ LRGD G SLV PV + + RL YT++L + A G+ G+
Sbjct: 64 DFFVVRYVKWLANTLRGDLGWSLVGKEPVKDALLRRLPYTVELALYAIFPVVFVGIWLGV 123
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW-------- 171
AAV++ D+ + AV S P F G+L+++IF L LP W
Sbjct: 124 KAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFYSILNWLPPGNLSMWAEEVIKSP 183
Query: 172 --------------------------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDY 205
+HLI P +TL A + R+TR++ML+VL K+Y
Sbjct: 184 EFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSWLWWAYLLRITRSSMLEVLNKEY 243
Query: 206 IMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVM 265
+ TARAKGLPE +V+ KHA RNALIP+ T + LF G V+ ETVF G+G+
Sbjct: 244 VRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGLFSGTVIVETVFNRTGVGSFTAQ 303
Query: 266 AIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
A Q DY V A L + V+ N + DI Y +IDPR+R+
Sbjct: 304 AALQLDYASVMASALFFSTILVVGNLIIDILYALIDPRIRL 344
>gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573
oligopeptide transport protein homolog ophB -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215732|gb|AAC44509.1| (AF242881) ophB
[Agrobacterium tumefaciens]
Length = 334
Score = 183 bits (459), Expect = 3e-45
Identities = 102/309 (33%), Positives = 170/309 (55%), Gaps = 8/309 (2%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQ 65
++K++ + L + ++S F L+PGD A +LG AT LA+ R +LGL+ PL ++
Sbjct: 24 LLKRVAAGLGLLLVLSSLIFIGSTLLPGDAATAILGRSATPAALAELRERLGLNEPLIVR 83
Query: 66 YIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYK 125
Y+ W++ + GD G+SL+ G V++ I RL TL L + ++A + G+L+ Y+
Sbjct: 84 YMSWLNAFVHGDLGSSLINGRSVADSIGARLGNTLFLAASVALVAVPLAVFLGVLSVRYR 143
Query: 126 HTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWR--------HLILP 177
+ D + + F+++P F++G LLI I V LG S R + LP
Sbjct: 144 GRVLDRTIALVTRTFVALPEFFIGYLLIYILSVSLGWFASSSTVFARMGFADRVVAIALP 203
Query: 178 SLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMF 237
LTL I + RA++LDV+E+ +I A KG+ VV++HAL NAL P++ +
Sbjct: 204 CLTLVFVVTGHITTMVRASVLDVMERPFIEMAALKGVSHGAVVWRHALPNALSPIINVVL 263
Query: 238 LQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITY 297
+ + +L G VV E +F +PG+G +V ++ R PVVQA L+ + + N AD+
Sbjct: 264 VNLAYLVAGVVVVEVIFVYPGIGQYMVDSVVNRHVPVVQATALLFAGVYIGLNLCADVLS 323
Query: 298 TIIDPRVRI 306
+ +PR+R+
Sbjct: 324 VLANPRLRL 332
>pir||T34758 oligopeptide transport system integral membrane protein -
Streptomyces coelicolor >gi|3402245|emb|CAA20181.1|
(AL031184) oligopeptide transport system integral
membrane protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 181 bits (455), Expect = 9e-45
Identities = 110/328 (33%), Positives = 182/328 (54%), Gaps = 26/328 (7%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPG----DPARYLLGEFATEEQLAKFRHQLGLDR 60
++I+++ + + + ++ + F I L+P D A +G+ A + R +LGL
Sbjct: 4 YLIRRLFAAAVMLVVIILVVFCIFFLVPKWAGVDIALNFVGKQADPAAVEGVREKLGLGD 63
Query: 61 PLYIQYIDWMSKVLRGD---------------FGTSLVQGVPVSELIAGRLSYTLKLTVT 105
P+++Q ++ + G FG S V ++ R TL L +
Sbjct: 64 PVFVQAWEFFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSVWPVLTERFPVTLALALG 123
Query: 106 AWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLG---- 161
A ++ +FG+ G+L+A+ + TL+D M +A+ +S+P ++ G+L + IF LG
Sbjct: 124 AAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLPIYFTGLLSLAIFSYGLGWIDG 183
Query: 162 -ILPI--SGPGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERM 218
+P+ S G +ILP +TL A+ AR+TRA ML++L +DYI TARAKGL E++
Sbjct: 184 EFVPLEDSLTGWLGGMILPWITLAFLYAAMYARITRATMLEILGEDYIRTARAKGLKEQV 243
Query: 219 VVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAI 278
V+ KHA+R+ L PL+T + + + L GGA++TET F PG+G ++ AI D P + +
Sbjct: 244 VISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFSLPGLGQKVLDAIKNHDLPFILGV 303
Query: 279 VLIIGVLTVIANFLADITYTIIDPRVRI 306
VLI + +IAN + DI Y +IDPRVR+
Sbjct: 304 VLITSLAVLIANLVVDILYAVIDPRVRL 331
>gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 300
Score = 181 bits (454), Expect = 1e-44
Identities = 96/300 (32%), Positives = 166/300 (55%), Gaps = 13/300 (4%)
Query: 13 LLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQL-----AKFRHQLGLDRPLYIQYI 67
++I +F++ +F ++ PG P F+ E++L A GLD+PL++QY+
Sbjct: 1 MIITLFVIVTVTFFLMQAAPGGP-------FSGEKKLPPEIEANLNAHYGLDKPLFVQYV 53
Query: 68 DWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKH 126
++ V DFG S +G V++LI+ + L A ++A G++FG++AA+Y +
Sbjct: 54 SYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHN 113
Query: 127 TLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLPQV 186
DY V L +F +S+P F + +L +F +KLG+ P++G W + LPS+ L +
Sbjct: 114 KWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALASMPM 173
Query: 187 AVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGG 246
A IARL+R++M++VL DYI TA+AKGL + + L+ + + G
Sbjct: 174 AFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRLLHILGPMAAQVLTG 233
Query: 247 AVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
+ + ET+FG PG+G V +I RDY V+ + + V+ ++ + D+ Y IIDPR+++
Sbjct: 234 SFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKL 293
>pir||F72720 probable oligopeptide transport system permease protein oppB
APE0303 - Aeropyrum pernix (strain K1)
>gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long
hypothetical oligopeptide transport system permease
protein oppB [Aeropyrum pernix]
Length = 342
Score = 179 bits (450), Expect = 3e-44
Identities = 109/341 (31%), Positives = 165/341 (47%), Gaps = 43/341 (12%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLY 63
++II + LS + +F +S+ F + L+ GDPA + T E + + R D PLY
Sbjct: 4 KYIIYRFLSAIPTLFGLSILVFILTRLV-GDPAAIYIHPDMTPEDVQRVRELYHFDDPLY 62
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+QYI W+ VL+GD G S+ +PV+E I L TL+L + A+ ++ + G+ G AA
Sbjct: 63 VQYIYWLKGVLQGDLGYSVTANMPVTEAIKSFLPATLELALYAFTLSIIVGVYLGTKAAA 122
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW------------ 171
K L D++ LA+ SMP FWL ++L+ +F +L GPG
Sbjct: 123 NKDKLIDHLTRLLALSGYSMPVFWLALMLLYLF---YNVLDFVGPGRLSLEVRFKYMPPY 179
Query: 172 ---------------------------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKD 204
+HLI P LT +A+ R+ R++M++ + K+
Sbjct: 180 GDFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEMNKE 239
Query: 205 YIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLV 264
Y+ A +KGL +V+ + RN+ I LV LQ L G V+TETVF WPG+G
Sbjct: 240 YVDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGRFAA 299
Query: 265 MAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
A Q D V L +G L ++ N DI +DPR+R
Sbjct: 300 NAAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIR 340
>pir||B72617 probable dipeptide transport system permease protein APE1395 -
Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1|
(AP000061) 336aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 336
Score = 179 bits (450), Expect = 3e-44
Identities = 106/327 (32%), Positives = 177/327 (53%), Gaps = 28/327 (8%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPAR-YLLGEFATEEQLAKFRHQLGLDRPLY 63
++++++L+ + + V+ +F I ++PG+PA+ + GE A+ E + + + LDRP +
Sbjct: 11 FLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASPEVVEQIVREYRLDRPFW 70
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QY +M K+L S V V ++I RL T++LT+ A++ + G+ G+++A+
Sbjct: 71 EQYFFFMYKLLTNTM-ISPVTSNYVWDMIVERLPVTIQLTLLAFVFIILLGIPLGIISAL 129
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD------------- 170
+ T+ D + +A+ +S+P FWL LLI +F K ++ ++G +
Sbjct: 130 TRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPPYSITGIPLIDS 189
Query: 171 ------------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERM 218
R +P+ TL P + +ARL R + LD + DY+ A+GLP
Sbjct: 190 IIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVEFMDARGLPSTW 249
Query: 219 VVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAI 278
Y+H LRN+ IP+VT + L L GA +TET+FG PG+G L+ +I DY +
Sbjct: 250 K-YRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSINNYDYLSLMGG 308
Query: 279 VLIIGVLTVIANFLADITYTIIDPRVR 305
VL +G++ + N L DITY IIDPRVR
Sbjct: 309 VLFVGIIYLTVNLLVDITYAIIDPRVR 335
>emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 315
Score = 178 bits (448), Expect = 6e-44
Identities = 98/301 (32%), Positives = 167/301 (54%), Gaps = 9/301 (2%)
Query: 14 LIPIFIVSVFSFSILHLIPGDPARYLLGE--FATEEQLAKFRHQLGLDRPLYIQYIDWMS 71
L + ++ + +F++ L+PGDP + L+GE + +E+ + + R +LGLDRPLY Q+ ++S
Sbjct: 12 LASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDRPLYEQFASFVS 71
Query: 72 KVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDY 131
+L D G S PV+E++ R+ +TL ++ II G + G LA
Sbjct: 72 DILHLDLGYSYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPEKRTSR 131
Query: 132 IVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD-------WRHLILPSLTLGLP 184
+ + F P ++L +L + IF +LG+ P G D HL LP + +
Sbjct: 132 VTGLAFIVFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPEIGSILHHLFLPICVMSVF 191
Query: 185 QVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLF 244
+ + R +++ ++ Y + ARAKGL + V+++H L+N+ +P++T + L +LF
Sbjct: 192 SASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLPIITLLALDFGFLF 251
Query: 245 GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
GA+ E +F GMG L+ AI +DYP++Q L+I + ++AN LAD+ Y +IDPRV
Sbjct: 252 SGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANMLADLLYALIDPRV 311
Query: 305 R 305
R
Sbjct: 312 R 312
>sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|495179|gb|AAB00535.1| (U09553) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 176 bits (442), Expect = 3e-43
Identities = 98/314 (31%), Positives = 165/314 (52%), Gaps = 13/314 (4%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQ 65
II++IL ++ +FI+S+ F L+PGDP L+G ++ R GL P + Q
Sbjct: 5 IIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEVEALRRAAGLYDPWWEQ 64
Query: 66 YIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYK 125
Y+ W+ + G+ G S PV +I R T +++ + I+ ++F + ++AA +
Sbjct: 65 YLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAARNE 124
Query: 126 HTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP-------------GDWR 172
D + +T +P + +L+I IFG L P G
Sbjct: 125 GKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGIIPVFFSKIY 184
Query: 173 HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPL 232
H+ILP+ +L + I R+ +LD +DY+ TARAKG+ E+++ +H LRNA +P+
Sbjct: 185 HMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILRNASLPI 244
Query: 233 VTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFL 292
+ I L GGA+ ET+FG+PG+G L + +I RDY ++ A++L+ G L ++ L
Sbjct: 245 ASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFLGLLGALL 304
Query: 293 ADITYTIIDPRVRI 306
+DI ++DPR+RI
Sbjct: 305 SDIIMAMVDPRIRI 318
>pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 314
Score = 175 bits (440), Expect = 5e-43
Identities = 105/307 (34%), Positives = 169/307 (54%), Gaps = 2/307 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+I K++L L+ +++V +F I+ IPGDP G +EE LA + GLD+PL+
Sbjct: 4 YIKKRLLFNLLSLWVVVTLTFFIIRTIPGDPFNDENGNVLSEEILAILNKRYGLDKPLFT 63
Query: 65 QYIDWMSKVLRGDFGTSLV-QGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QY+ ++ +L DFG SL+ + V +I L + L + + +A G+ G+LAA
Sbjct: 64 QYLIYLKCLLTLDFGESLIYKDRTVIGIITTALPSSAILGLESLCLALFGGITLGILAAF 123
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGL 183
YK I + ++ +S+P F +G L IF +K +LPI+ GD+ H +LPS+ L +
Sbjct: 124 YKRGCGRTIFFS-SIIQISVPAFVIGAFLQYIFAIKYSLLPIACWGDFSHTLLPSIALAI 182
Query: 184 PQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWL 243
+A I +LT A++ L+KDY++ A AKGL V+ KH L AL P+++Y I L
Sbjct: 183 APMAFITQLTYASVSASLKKDYVLLAYAKGLSPLKVLIKHVLPYALFPVISYSAFLITTL 242
Query: 244 FGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPR 303
G E +F PG+G + +I QRDYP+ + + G ++ + L D+ IDP+
Sbjct: 243 MTGTFSIENLFCIPGLGKWFICSIKQRDYPMTLGLSVFYGAFFMLISLLCDLLQAWIDPQ 302
Query: 304 VRIMGGE 310
+R G+
Sbjct: 303 IRYSYGK 309
>pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus
radiodurans (strain R1)
>gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide
ABC transporter, permease protein, putative [Deinococcus
radiodurans]
Length = 340
Score = 173 bits (434), Expect = 3e-42
Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDP--ARYLLGEFATEEQLAKFRHQLGLDRPL 62
+I+++++ + + + ++S+ I L+ + A Y+ G+ ++ + Q GL P
Sbjct: 4 FIVRRLIQIPLVMVVLSLLLVGITQLLTPEQRAAPYIRGDNQAA-RIEQIIDQRGLRDPF 62
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY W + ++GD G S G V + I RL T++LT+ I + + G L+A
Sbjct: 63 PVQYGRWAASAVQGDLGFSRASGKDVIDTIKERLPNTIELTLLTAIPILLLSVWLGSLSA 122
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP-------------- 168
+ K D ++ L + S+P F LGI+L+ IF LG LP +G
Sbjct: 123 LNKDKFIDQVLRVLTILGYSLPTFVLGIVLLAIFYAYLGWLPGAGQLEVVNQFAVSDMKR 182
Query: 169 ------------GDW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTA 209
G W RH+ILP+ TL + A I ++ R +MLDVL DYI TA
Sbjct: 183 YTGMLTVDALLNGRWSVAWDVVRHMILPATTLAIVSSADIIKVMRNSMLDVLSSDYIRTA 242
Query: 210 RAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQ 269
RAKGL +V KHA RNAL+P++T L I L G+++TET+F +PG+G +V + Q
Sbjct: 243 RAKGLTPGVVNRKHARRNALLPVITLGGLLIINLLSGSLITETIFAYPGIGQWVVQSALQ 302
Query: 270 RDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
D V L+ ++ V+ N L DI Y I+DPRVR
Sbjct: 303 IDLAGVLGFALLSALIVVVMNTLVDILYGIVDPRVR 338
>sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1075747|pir||C53290 oligopeptide transport protein
oppB - Lactococcus lactis subsp. lactis
>gi|308852|gb|AAA16165.1| (L18760) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 173 bits (434), Expect = 3e-42
Identities = 97/314 (30%), Positives = 163/314 (51%), Gaps = 13/314 (4%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQ 65
II++IL ++ +FI+S+ F L+PGDP L+G ++ R GL P + Q
Sbjct: 5 IIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEVEALRRAAGLYDPWWEQ 64
Query: 66 YIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYK 125
Y+ W+ + G+ G S PV +I R T +++ + I+ ++F + ++AA +
Sbjct: 65 YLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAARNE 124
Query: 126 HTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP-------------GDWR 172
D + +T +P + +L+I IFG L P G
Sbjct: 125 GKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGIIPVFFSKIY 184
Query: 173 HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPL 232
H+ILP+ +L + I R+ +LD +DY+ TARAKG+ E+++ +H LRNA +P+
Sbjct: 185 HMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILRNASLPI 244
Query: 233 VTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFL 292
+ I L GGA+ ET+FG+PG+G L + +I RDY ++ A++L+ G ++ L
Sbjct: 245 ASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFSGLLGALL 304
Query: 293 ADITYTIIDPRVRI 306
DI ++DPR+RI
Sbjct: 305 PDIIMAMVDPRIRI 318
>pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 328
Score = 173 bits (434), Expect = 3e-42
Identities = 102/318 (32%), Positives = 172/318 (54%), Gaps = 17/318 (5%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPA-RYLLGEFATEEQLAKFRHQLGLDRPLY 63
+ +++IL ++ + ++SV F ++ L PG +YL ++E +A QLGLD+P +
Sbjct: 9 YTLRRILGMIPTLLVISVLCFLVIKLQPGSFIDQYLEDPRFSKETVANITRQLGLDQPAW 68
Query: 64 IQYIDWMSKVL-RGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
QY++W++ V+ R DFG S G PV+ +I RL +T+ + + W+ + G+ A
Sbjct: 69 KQYLNWITGVVTRLDFGYSFASGAPVTSIIGERLGWTVFIAALTLALTWLIAVPLGIYTA 128
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIF----GVKLGIL----PISGPGDWR-- 172
++ + I L +++P F +LL+++ G +G L I P +
Sbjct: 129 FNRYGIPAQIANFLGYVGLAIPDFLAALLLVVLVRQLGGTNVGGLFRPDMIDAPWSFAKV 188
Query: 173 -----HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRN 227
HL +P L +GL VA + R RA+ LDVL +DYI TA+AKGLP+ V++KHA+RN
Sbjct: 189 LDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQDYIRTAKAKGLPQGRVIWKHAVRN 248
Query: 228 ALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTV 287
A+ PL++ L +P L G ++ V P +G LL ++ +D ++++ L +
Sbjct: 249 AINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLLYDSLLNKDQYTAMTLLMLSAFLLL 308
Query: 288 IANFLADITYTIIDPRVR 305
I N L+D+ DPRVR
Sbjct: 309 IGNLLSDLALAWADPRVR 326
>pir||C71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 313
Score = 172 bits (432), Expect = 4e-42
Identities = 101/307 (32%), Positives = 170/307 (54%), Gaps = 2/307 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+I +++L L+ +++V +F I+ IPGDP G + E LA +++ GLD+PL+
Sbjct: 4 YIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFNDENGNILSSETLALLKNRYGLDKPLFT 63
Query: 65 QYIDWMSKVLRGDFGTSLV-QGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QY+ ++ +L DFG SL+ + V +IA L + L + + ++ G+ G+LAA
Sbjct: 64 QYLIYLKCLLTLDFGESLIYKDRTVISIIAAALPSSAILGLESLCLSLFGGITLGILAAF 123
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGL 183
YK + I + +V +S+P F +G L +F +K LPI+ G++ H +LPS+ L +
Sbjct: 124 YKKSCGRTIFFS-SVIQISVPAFVIGAFLQYVFAIKYSCLPIACWGNFSHTLLPSIALAI 182
Query: 184 PQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWL 243
+A I +LT A++ L+KDY++ A AKGL V+ KH L AL P+++Y I L
Sbjct: 183 TPMAFITQLTCASVSANLKKDYVLLAYAKGLSPFKVLIKHILPYALFPVISYSAFLITTL 242
Query: 244 FGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPR 303
G E +F PG+G + +I QRDYP+ + + G ++ + D+ IDP+
Sbjct: 243 MTGTFSIENLFCIPGLGKWFICSIKQRDYPITLGLSVFYGAFFMLTSLCCDLLQAWIDPQ 302
Query: 304 VRIMGGE 310
+R G+
Sbjct: 303 IRYSYGK 309
>pir||T35939 probable transport permease protein - Streptomyces coelicolor
>gi|4158198|emb|CAA22761.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 334
Score = 171 bits (428), Expect = 1e-41
Identities = 99/307 (32%), Positives = 163/307 (52%), Gaps = 15/307 (4%)
Query: 15 IPIFIVSVF-SFSILHLIPGDPARYLLGEFAT---EEQLAKFRHQLGLDRPLYIQYIDWM 70
+P+ +V F +F+I P DP R G A +E L + R LG+D ++ W+
Sbjct: 25 VPVVLVVTFGAFAIAAASPFDPVRAYAGTAALGADQETLDRLRENLGVDESFVARWWHWL 84
Query: 71 SKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFD 130
+ L GD G S V PV+++I RL ++ L A+ +A GL+ G+LAA ++ D
Sbjct: 85 TSALTGDLGHSSVLRQPVTQVIGERLVWSALLCAVAFAVAVGLGLLLGVLAARRPGSVLD 144
Query: 131 YIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWR-----------HLILPSL 179
V +L+ + P FW+ +L + +F ++ +LP G D H++LP+
Sbjct: 145 RAVTSLSYTLEAAPVFWIALLAVWLFALQWDVLPAGGLTDTASQQVTPGQVAGHIVLPAG 204
Query: 180 TLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ 239
L + Q+ R + D L +D + ARA+GL E V+ HALR+ L+P++T + +
Sbjct: 205 VLAVSQLPWFTLYVRQGVGDALAEDPVRGARARGLAEGTVLVGHALRSGLLPVLTLIGSR 264
Query: 240 IPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTI 299
+P L GA++ ETVF WPG+ V A D+P++ A+ ++ V + N LAD+ Y +
Sbjct: 265 VPELITGALLVETVFSWPGIAAATVEAATAVDFPLLAALTVLATVAVLAGNLLADLLYGL 324
Query: 300 IDPRVRI 306
DPRV++
Sbjct: 325 FDPRVKL 331
>pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39] >gi|8978572|dbj|BAA98409.1| (AP002545)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 314
Score = 170 bits (427), Expect = 2e-41
Identities = 101/307 (32%), Positives = 168/307 (53%), Gaps = 2/307 (0%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYI 64
+I +IL L+ ++IV +F ++ IPGDP +EE L + + GLD+PLY
Sbjct: 4 YIKNRILFNLLSLWIVLTLTFLVMKTIPGDPFNDEGCNVLSEEVLQTLKSRYGLDKPLYQ 63
Query: 65 QYIDWMSKVLRGDFGTSLV-QGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
QY ++ + + DFG SLV + V+ +I+ + L + + ++ G+ G +AA+
Sbjct: 64 QYTQYLHSIAKLDFGNSLVYKDRKVTNIISTAFPISAILGLQSLFLSIGGGIALGTIAAL 123
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGL 183
K YI + ++ +S+P F LL +F VK+ +LPI+ G + H ILP+L L +
Sbjct: 124 KKKKQRRYI-LGASILQISIPAFIFATLLQYVFAVKIPLLPIACWGSFTHTILPTLALAV 182
Query: 184 PQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWL 243
+A I +LT +++ L KDY++ A AKGL VV KH L A+ P ++Y +
Sbjct: 183 TPMAFIIQLTYSSVSAALNKDYVLLAYAKGLSPLKVVIKHILPYAIFPTISYSAFLTTTV 242
Query: 244 FGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPR 303
G E +F PG+G + +I QRDYPV + + G L ++++ L+D+ +IIDP+
Sbjct: 243 ITGTFAIENIFCIPGLGKWFICSIKQRDYPVALGLSVFYGTLFMLSSLLSDLIQSIIDPQ 302
Query: 304 VRIMGGE 310
+R G+
Sbjct: 303 IRYAHGK 309
>pir||F82377 ABC transporter, permease protein VCA1099 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658546|gb|AAF96991.1| (AE004435) ABC transporter,
permease protein [Vibrio cholerae]
Length = 318
Score = 170 bits (426), Expect = 2e-41
Identities = 93/306 (30%), Positives = 158/306 (51%), Gaps = 5/306 (1%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLG-----EFATEEQLAKFRHQLGLDR 60
++ + L + V +F ++ IPGD A + ++ + R +LGLDR
Sbjct: 5 LVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDR 64
Query: 61 PLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120
+ Y+ W+ +L + G SLV PV I L ++L L A +++ + G+
Sbjct: 65 SAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVY 124
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT 180
D + + ++ + P F +G+ L+++F ++L LP++G G + LILP+L
Sbjct: 125 CGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALA 184
Query: 181 LGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQI 240
L L A+ +R+ R VL+ Y AR KGL +HA RN +P++ ++ +Q
Sbjct: 185 LALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQA 244
Query: 241 PWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTII 300
L G V+ E++F WPG+G+ L AIFQRD P++Q L++G+L V N L D+ +
Sbjct: 245 VSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYAL 304
Query: 301 DPRVRI 306
DPR+R+
Sbjct: 305 DPRLRL 310
>pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 329
Score = 169 bits (424), Expect = 4e-41
Identities = 105/324 (32%), Positives = 172/324 (52%), Gaps = 24/324 (7%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAK-----FRHQLG 57
++++ KKIL ++ F ++I +PG+P +L+ FA + K F G
Sbjct: 2 RKYLTKKILIYILTFFFAVTIDWAIPRFMPGNPINFLISRFAGLPESVKVLQSYFTQAFG 61
Query: 58 LDRPLYIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
LD+PL+ QYI++ + RGD G S+ + PV+++IA L Y+L + + A ++++ G
Sbjct: 62 LDKPLWEQYINFWKALFRGDLGISIYMYPQPVAKVIARALPYSLIVLLPAVLLSFAIGNR 121
Query: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----- 171
FG A K D + + + PYFW GILL IFGV + + P++G +
Sbjct: 122 FGAFVARKKR--LDNFALPVFYTLTASPYFWFGILLAWIFGVVIPLFPLAGAYSFGITPS 179
Query: 172 ----------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221
H +LP +L L + A R ++ LE +Y A G +R++
Sbjct: 180 FSWDFILDFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLEALGSSQRLI-R 238
Query: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281
K+A RNA++P +T + +Q+ + GA+ TE VF +PG+G +L+ I +DY ++Q L
Sbjct: 239 KYAYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQDYFLIQGCFLF 298
Query: 282 IGVLTVIANFLADITYTIIDPRVR 305
I + ++ANFL DI Y IIDPR+R
Sbjct: 299 IILGVLLANFLVDIFYVIIDPRIR 322
>gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 328
Score = 168 bits (420), Expect = 1e-40
Identities = 89/307 (28%), Positives = 171/307 (54%), Gaps = 7/307 (2%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE---EQLAKFRHQLGLDRPL 62
++ +++ +++ +F++S +F ++ L PG+P +L + EQ+ + +LGL+ L
Sbjct: 7 MLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSL 66
Query: 63 YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+Q+ WM+ +L + G S PV++++ TL ++ + +++ + G++AA
Sbjct: 67 LVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAA 126
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLG 182
H D ++ ++ +S+P F++GI+L+ I + I + ILP +TL
Sbjct: 127 KRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVI----LSQFILPVITLS 182
Query: 183 LPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPW 242
L A I RL R+N+L +L+ + + +R +G+ ER ++ L+ ++P++ + + +
Sbjct: 183 LGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISLGS 242
Query: 243 LFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDP 302
L GG VV E +F PG+G LL+ +I RDYPV+Q VL IG VI N +AD+ ++DP
Sbjct: 243 LIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDP 302
Query: 303 RVRIMGG 309
+ R+ G
Sbjct: 303 KQRLQLG 309
>emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]
Length = 207
Score = 166 bits (415), Expect = 4e-40
Identities = 85/206 (41%), Positives = 130/206 (62%), Gaps = 8/206 (3%)
Query: 108 IIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG 167
I++ G+ FG+LAA D + T + S+P F +G +LI F ++ LP+ G
Sbjct: 1 ILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQG 60
Query: 168 -------PGDW-RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMV 219
W HLILP++TL +P +A IAR+TR +ML+VL +DY+ TA AKG +
Sbjct: 61 YTSINQGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAM 120
Query: 220 VYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIV 279
++ HAL+NA +P++T + + ++ GG V+TETVF PG+G L+V AI RDYP++Q ++
Sbjct: 121 LFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVL 180
Query: 280 LIIGVLTVIANFLADITYTIIDPRVR 305
++I L V+ N L D+ YT+IDPR+R
Sbjct: 181 VLISGLYVLINLLVDLAYTLIDPRIR 206
>gb|AAC18097.1| (AF058302) membrane protein of putative ABC transporter
[Streptomyces roseofulvus]
Length = 323
Score = 166 bits (415), Expect = 4e-40
Identities = 95/311 (30%), Positives = 161/311 (51%), Gaps = 8/311 (2%)
Query: 1 MKKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLL-------GEFATEEQLAKFR 53
M ++ +++ +++ ++ SF++L+L+PGDP + +L G + + R
Sbjct: 1 MTARYLARRLGRVVLVVWAAYTLSFAVLYLLPGDPVQTMLSGAAGGDGAAVDPHEAQRLR 60
Query: 54 HQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVF 113
H LGLDRPL +QY + LRGD GTS+ G PV +A L TL + + A +++ +
Sbjct: 61 HTLGLDRPLAVQYTSMLGHALRGDLGTSIRSGAPVRGQLAQALPDTLSVALPALVLSVLV 120
Query: 114 GLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPG-DWR 172
L +L A + L +MP FWLG+LL + G+LP +G G R
Sbjct: 121 ALCLALLGAWPRRRALRRAATALPSLGTAMPSFWLGLLLAQWVSFRWGLLPATGGGRSPR 180
Query: 173 HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPL 232
+L +LTL LP V+A++ + L + Y AR++G ++ ALRNA +
Sbjct: 181 ATLLAALTLALPIGCVLAQVLGRGLRAALAEPYADVARSRGAGRARLLLARALRNASVAA 240
Query: 233 VTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFL 292
+ + + L GAV+ ETVF G+G L + A+ +D PVVQ +V++ ++ + N +
Sbjct: 241 LALLGVVCGQLLAGAVLVETVFARGGIGRLAMDAVTYQDLPVVQGVVVLAALVAALVNLV 300
Query: 293 ADITYTIIDPR 303
D+ +++PR
Sbjct: 301 VDLLLPLLEPR 311
>pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus
abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1|
(AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB
[Pyrococcus abyssi]
Length = 353
Score = 166 bits (415), Expect = 4e-40
Identities = 97/266 (36%), Positives = 144/266 (53%), Gaps = 16/266 (6%)
Query: 57 GLDRPLYIQYIDWMSKVLRGDFG---TSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVF 113
GLDRP +++ ID K + DFG + + V ++IA + T+ L TA +I
Sbjct: 82 GLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFL 141
Query: 114 GLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD--- 170
G++ G+ AA LFD + A+ S+P +W G++LIL+F KL +LP G
Sbjct: 142 GIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPP 201
Query: 171 ----------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVV 220
+H+ILP T+ A +TR M+ VL++D+IM ARAKG+PE V+
Sbjct: 202 KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVI 261
Query: 221 YKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVL 280
Y HALR A P++T + GGA++TE+VF WPGMG L +AI Q + ++
Sbjct: 262 YGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
Query: 281 IIGVLTVIANFLADITYTIIDPRVRI 306
I L +I LAD+ Y +DPRV++
Sbjct: 322 ISVALYLIGVLLADLAYGFLDPRVKV 347
>gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 333
Score = 164 bits (412), Expect = 1e-39
Identities = 101/330 (30%), Positives = 169/330 (50%), Gaps = 24/330 (7%)
Query: 1 MKKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLG-----EFATEEQL-AKFRH 54
M +W+I+++ S++I IF+ V S+++L P PA Y++ +FA + +L A
Sbjct: 1 MNYKWLIRRLASVIIAIFVTIVISWALLEFSPYSPANYIMQFINPQDFAQKPELYASLID 60
Query: 55 QLGLDRPL---YIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAW 111
L RP I ++++ L G+ G S++ VPV+ELIA L +TL + VT+ +I++
Sbjct: 61 YLNTLRPHGNPLINAVNYIWNTLHGNLGFSIISNVPVAELIAVALPWTLFIVVTSILISF 120
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG---- 167
G+ G + T D + S+P + +LLI I I P G
Sbjct: 121 FLGIRLGQKLGYLRGTKTDSVATVSLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSI 180
Query: 168 ---PGD--------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
PG H LP LTL + + RAN + VL +D++ A G+ +
Sbjct: 181 HVTPGFNLPFIASVLYHAFLPILTLTIVNLVGWILQMRANTIYVLGEDFVNFAEISGVKK 240
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
++ K+ +NA++PL T + + I + F G+V E F +PG+GNLL+ +I DYP
Sbjct: 241 DIIEKKYIGKNAILPLYTSLIISIGFSFSGSVFVEQTFSYPGVGNLLINSITSNDYPTEM 300
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRI 306
+ +II V ++ N +AD+TY+ +DPR ++
Sbjct: 301 GVFIIIIVAVIVGNLIADLTYSFLDPRAKV 330
>pir||A71212 probable oligopeptide transport system permease protein appB -
Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1|
(AP000007) 349aa long hypothetical oligopeptide
transport system permease protein appB [Pyrococcus
horikoshii]
Length = 349
Score = 164 bits (412), Expect = 1e-39
Identities = 98/276 (35%), Positives = 150/276 (53%), Gaps = 16/276 (5%)
Query: 47 EQLAKFRHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQ--GVP--VSELIAGRLSYTLKL 102
E++A +RHQ LDRP + + + + + + DFG + + G V +I+ L T+ L
Sbjct: 68 ERIAYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVKNIISLALPRTILL 127
Query: 103 TVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGI 162
TA II + GL+ G+ AA + FD + LA+ S+P +W G++ +LIF KLG
Sbjct: 128 FTTAQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFGMMSLLIFAFKLGW 187
Query: 163 LPISGPGD------------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTAR 210
P + D + L+LP T+ A +TR M+ +++D+IM AR
Sbjct: 188 FPANSMPDPNLTGLAHVLDVAKRLVLPIFTIVFVLFGGWAWVTRNIMITTMQEDFIMAAR 247
Query: 211 AKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQR 270
AKG+PER V+Y HALR A P+VT + GGA++TE+VF WPGMG + +AI
Sbjct: 248 AKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITESVFNWPGMGRVYWIAIQTN 307
Query: 271 DYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
+ +V + I L + +ADI+Y +DPRVR+
Sbjct: 308 EINLVMGLTFISVALYLTGVIIADISYGFLDPRVRV 343
>pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 333
Score = 164 bits (411), Expect = 1e-39
Identities = 99/322 (30%), Positives = 171/322 (52%), Gaps = 21/322 (6%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE-EQLAKFRHQLGLDRPLY 63
+I++++L + + ++ +F I PGD L + + E + + R + GLD+P++
Sbjct: 10 YILRRVLQFIPTFVLATMLAFFITQAAPGDFLSQLKENPSVKPETIERLRREFGLDQPVF 69
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+QY+ W +L GD G S PV+E+I G +L L V + ++ + + G+ +A+
Sbjct: 70 VQYLYWFKNLLMGDLGDSFQYKRPVAEVIQGPFLNSLILVVISTVLHFAVSIPVGVYSAL 129
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLI---LIFGVKLGI-LPISG------PGD--- 170
++ +D + + + +P F+ G+L I L + G LP+ G P D
Sbjct: 130 KPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAMLQLKQQFGWDLPLGGKSSSALPTDISP 189
Query: 171 -------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKH 223
+ H ++PS+ L L ++ +R R ML+VL +DYI TARAKGL +R V YKH
Sbjct: 190 LRHVWDVFLHALIPSIILVLRGISGESRFIRGQMLEVLGQDYIRTARAKGLNDRAVTYKH 249
Query: 224 ALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIG 283
A + A+IP + + +P L GGA E VF WPG+ L + A+ +D ++ A+ +
Sbjct: 250 AFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTPLQLTALGNQDIYILMAVTALGT 309
Query: 284 VLTVIANFLADITYTIIDPRVR 305
+L +I N L+D+ +DPR+R
Sbjct: 310 LLYMIGNLLSDLLLAAVDPRIR 331
>sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
>gi|7449120|pir||H64877 peptide transport system
permease protein sapB - Escherichia coli
>gi|1279401|emb|CAA65938.1| (X97282) SapB protein
[Escherichia coli] >gi|1742115|dbj|BAA14854.1| (D90767)
Peptide transport system permease protein SapB.
[Escherichia coli] >gi|1742124|dbj|BAA14863.1| (D90768)
Peptide transport system permease protein SapB.
[Escherichia coli] >gi|1787550|gb|AAC74375.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 321
Score = 161 bits (403), Expect = 1e-38
Identities = 91/327 (27%), Positives = 162/327 (48%), Gaps = 52/327 (15%)
Query: 7 IKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQY 66
+++IL L++ +F+++ FS+ + P P + L+ +
Sbjct: 6 LRRILLLIVTLFLLTFVGFSLSYFTPHAPLQ---------------------GASLWNAW 44
Query: 67 IDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKH 126
+ W + ++ DFG S + G P++E + T++L + A+ A + G+ GM+A + +H
Sbjct: 45 VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGITRH 104
Query: 127 TLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD---------------- 170
D ++ +A+ S+P FWL +LL L + LG LP+SG D
Sbjct: 105 KWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFALIDA 164
Query: 171 ------WR---------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLP 215
WR H+ILP +TL + + RL R + ++V +++Y+ A +GL
Sbjct: 165 WLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLS 224
Query: 216 ERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVV 275
++ +H L NAL P++ + LQ + A++TE VF WPG+G L+ AI Q+DY +
Sbjct: 225 RFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAI 284
Query: 276 QAIVLIIGVLTVIANFLADITYTIIDP 302
A V++ G L +I N ++DI + +P
Sbjct: 285 SAGVMVCGSLVIIVNVISDILGAMANP 311
>gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus
solfataricus]
Length = 348
Score = 160 bits (401), Expect = 2e-38
Identities = 103/343 (30%), Positives = 183/343 (53%), Gaps = 43/343 (12%)
Query: 5 WIIKKILS----LLIPIFIVSVFSFSILHLIPGDPARYLLGEFA------------TEEQ 48
++IKK+L LL + I+ +F+F IL + + + +F+ T+ Q
Sbjct: 6 YMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLNSTQIQ 65
Query: 49 LA--KFRHQL----GLDRPLYIQYIDWMSKVLRGDFGTSLVQGVP-----VSELIAGRLS 97
+A K+R L GL++P+ +Y M ++R DFGT+ P VS +IA L
Sbjct: 66 IAVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSIIAYYLP 125
Query: 98 YTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLI--LI 155
T+ L TA I+ V G + G+L+A K ++ ++ +AV S+P +WLG +LI L
Sbjct: 126 NTILLFTTATIVFIVAGTIIGLLSA--KSKFWEKVIAIIAVIHSSIPTWWLGFVLIAALA 183
Query: 156 FGVKL-------GILPISGPGDWR-----HLILPSLTLGLPQVAVIARLTRANMLDVLEK 203
+ VK+ + P P D+ H+ LP +T+ + V A + R+ + ++++
Sbjct: 184 YAVKVFPPGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTSIMKE 243
Query: 204 DYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLL 263
D+++TA+A+GLP ++Y+H LR+ + T L + GG++ TE VF WPG+G L
Sbjct: 244 DFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGVGLLT 303
Query: 264 VMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
+AI D PV+ I ++ ++ ++ FL ++ Y ++DPR+++
Sbjct: 304 YVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIKV 346
>pir||G82301 peptide ABC transporter, permease protein VC0619 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655052|gb|AAF93785.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 328
Score = 159 bits (397), Expect = 5e-38
Identities = 93/322 (28%), Positives = 164/322 (50%), Gaps = 21/322 (6%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA---TEEQLAKFRHQLG-LDR 60
+ ++++ + + + +F I +PGDP + T E++ + LG ++
Sbjct: 3 YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
Query: 61 PLYIQYIDWMSKVLRGDFGTSL-VQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
P Y+QY+ ++ +L + GTS+ + V+EL+ G ++L L TA II++ G V G+
Sbjct: 63 PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPIS------GPGDWR- 172
AA + + +D + + ++P + +L + F + L P DW
Sbjct: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
Query: 173 ---------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKH 223
H +LP + Q+ R NM+++L +DYI A+ KGL E VV+ +
Sbjct: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
Query: 224 ALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIG 283
A RNAL+P VT + + + GG ++ E +F +PG+G +L AI RDY V+Q +LI+
Sbjct: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
Query: 284 VLTVIANFLADITYTIIDPRVR 305
+ + N LAD+ Y ++DPR+R
Sbjct: 303 LFMLFFNLLADMLYVVLDPRLR 324
>gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1]
Length = 315
Score = 158 bits (396), Expect = 7e-38
Identities = 102/313 (32%), Positives = 164/313 (51%), Gaps = 22/313 (7%)
Query: 14 LIPIFIVSVFSFSILHLIPGDPARYL--LGEFATEEQLAKFRHQLGLDRPLYIQYIDWMS 71
+IP+ +++ F ++ GDP L + E L +L LD+PL +Y W+S
Sbjct: 1 MIPMMLIASFLMFVVISFSGDPLAGLKTMQPPPPPEVLHAMAVKLRLDQPLLDRYWMWLS 60
Query: 72 KVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDY 131
+ GDFG S + + + + RL +L+L ++A++ + ++ AV + + D+
Sbjct: 61 GLFVGDFGPS-IHNIDIGAELVKRLGVSLRLLALGIVLAFLMAVAASVIGAVLQFSWADH 119
Query: 132 IVMTLAVFFMSMPYFWLGILL---ILIFGVKLG--ILPISGPG-------DWRHLILPSL 179
I+ +AV +SMP FWL + L + +LG +L SG G W ++L
Sbjct: 120 IISFVAVAMISMPVFWLALQLKRLAISINQELGFRLLYTSGDGAGMTASTPWDRVLLLIG 179
Query: 180 TLGLPQVAVI-------ARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPL 232
L LP +A+ +R R ++D L +Y+ ARAKGL E VV H LR +L P+
Sbjct: 180 VLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVLAHGLRTSLAPM 239
Query: 233 VTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFL 292
+T + + G +VVTETVF W GMG+LLV I D VV +L+ G++ ++ N +
Sbjct: 240 LTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLVAGLIIMVFNLI 299
Query: 293 ADITYTIIDPRVR 305
ADI Y ++DPR+R
Sbjct: 300 ADILYAVLDPRIR 312
>sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
>gi|628818|pir||S39586 peptide transport system permease
protein sapB - Salmonella typhimurium
>gi|414209|emb|CAA52285.1| (X74212) sapB [Salmonella
typhimurium]
Length = 321
Score = 157 bits (393), Expect = 2e-37
Identities = 93/327 (28%), Positives = 159/327 (48%), Gaps = 52/327 (15%)
Query: 7 IKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQY 66
++++L LL+ +F ++ FS+ + P P + L+ +
Sbjct: 6 LRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQ---------------------GASLWNAW 44
Query: 67 IDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKH 126
+ W + +L DFG S + G +SE + T++L + A+ A + G+ G +A V +
Sbjct: 45 VFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGTVAGVTRS 104
Query: 127 TLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD---------------- 170
D + LA+ S+P FWL +LL L F + LG LP+SG D
Sbjct: 105 KWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFAIIDA 164
Query: 171 ------WR---------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLP 215
WR H++LP LTL + + RL R + ++V +++Y+ A +GL
Sbjct: 165 WISDCPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLS 224
Query: 216 ERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVV 275
++ +H L NAL P++ + LQ + A++TE VF WPG+G L+ AI Q+DY +
Sbjct: 225 RFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAIRQQDYAAI 284
Query: 276 QAIVLIIGVLTVIANFLADITYTIIDP 302
A V++IG L ++ N ++DI + +P
Sbjct: 285 SAGVMVIGSLVIVVNVISDILGAMANP 311
>pir||E81253 probable peptide ABC-transport system permease protein Cj1583c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969000|emb|CAB73571.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 314
Score = 155 bits (388), Expect = 6e-37
Identities = 97/310 (31%), Positives = 157/310 (50%), Gaps = 11/310 (3%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQ 65
++K+++ + F + F +LH G A ++E + + LGLD+PL Q
Sbjct: 1 MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFVQRIEQNLGLDKPLLEQ 60
Query: 66 YIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYK 125
Y W+ K L+GD G S + G V +LI R+ T L +A ++ ++ + +L YK
Sbjct: 61 YKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSALMLLFLLSVFLALLGYYYK 120
Query: 126 HTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD----------WRHLI 175
+ D I+ LA F ++P F L +L +LIFG+ ILP+ G D HLI
Sbjct: 121 ESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPVMGSSDIGFEDDFLNRLEHLI 180
Query: 176 LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTY 235
LP L L L +A+ R+ R + + + +I A+ L E+ +Y L+ +L P+V Y
Sbjct: 181 LPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARALREK-DIYFLVLKYSLSPIVAY 239
Query: 236 MFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADI 295
G V E+VF + G+G+LL +I +DYP+V A++ +L FL+DI
Sbjct: 240 FGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDYPIVLALIFFSVLLAAFFTFLSDI 299
Query: 296 TYTIIDPRVR 305
I++PR+R
Sbjct: 300 VARILNPRLR 309
>pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 155 bits (387), Expect = 8e-37
Identities = 91/329 (27%), Positives = 170/329 (51%), Gaps = 27/329 (8%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFAT----------EEQLAKF 52
K ++I ++L I F+ F + L+P DP + L ++ T EE +
Sbjct: 5 KGYLIPRLLQYFIVTFLGLSAIFFLPRLLPTDPVKQQLQQYQTFGVYIPPEQQEEMMRTL 64
Query: 53 RHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAW 111
R GL+ L+ QY+D+ ++L GDFG S + V VS++I+ L +T+ L I++W
Sbjct: 65 RQLYGLEGTLWEQYLDFWKRLLTGDFGPSFSRFPVSVSKVISQALPWTVGLLSLTTILSW 124
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP--- 168
+ ++ G + Y+ + + + + + +PY+ + ++ +++F I P+SG
Sbjct: 125 IIAVIVGGIVGYYRKRWMEALDVVVMII-RPIPYYVMALICLILFAYVFPIFPLSGGIGI 183
Query: 169 ------------GDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
+H LP+LTL + +A + + + V +D++ A+ G+ E
Sbjct: 184 GQKLSFDLETILSIVKHGTLPALTLMIVGIAWQFQSMKLIVQIVKSEDHVWYAKTAGVTE 243
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
+M+V H +RNA++P++T + LQ +F GA++TE VF +PG+G +L AI + DY ++
Sbjct: 244 KMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGIGWILYDAIMKADYNLIM 303
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVR 305
++ I + + L D+ Y + DPRVR
Sbjct: 304 GVMCISTIAITTSILLLDLIYPLFDPRVR 332
>pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 152 bits (380), Expect = 5e-36
Identities = 91/329 (27%), Positives = 166/329 (49%), Gaps = 26/329 (7%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATE----------EQLAKF 52
+ +++ ++++ + +F+ F + +P DP + + T+ + +
Sbjct: 5 RRYLLPRLITYFLVVFVGLTIVFFLPRFLPSDPIQAYIDRLITQGGNLNPEYFNKLVETI 64
Query: 53 RHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAW 111
+ GL L+ QY+++ ++L+GDFG S Q PV +LI L +T L +I+W
Sbjct: 65 KELYGLQGSLWNQYVNFWKRLLKGDFGPSYFQFPTPVMKLIRQSLPWTAWLLFVTTVISW 124
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG---- 167
+ G + G LA + + I+ +A+ MPY+ L + L+++ I PI G
Sbjct: 125 IIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILLAYIFPIFPIGGGFAI 184
Query: 168 ----PGDW-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
W +H LP+L+L L V + + + V +DY+ A+ G+ E
Sbjct: 185 GMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVVQSVKTEDYVKYAKMGGVEE 244
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
R +V ++ +RNA++P +T + L + +FGGA++TE VF +PG+G+LL AIF DY ++
Sbjct: 245 RRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYPGIGSLLYNAIFTGDYNLLM 304
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVR 305
I + +L + + D+ Y + DPRVR
Sbjct: 305 GISTLSILLVTTSILVIDLLYPLFDPRVR 333
>emb|CAA10910.1| (AJ222649) sapB [Erwinia chrysanthemi]
Length = 313
Score = 150 bits (374), Expect = 3e-35
Identities = 94/320 (29%), Positives = 155/320 (48%), Gaps = 46/320 (14%)
Query: 7 IKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQY 66
+++ L LL+ F++S+ FS L P +P + G P+
Sbjct: 6 VRRSLLLLVTSFLLSLIGFSPLQYTPQEPL-----------------NGAGCSMPIV--- 45
Query: 67 IDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKH 126
++S G F S G P+SE + L T+++++ A+++ + G+ G+ V +H
Sbjct: 46 --FISAACAGRFWVSSTNGQPISEQLREVLPATVEVSLLAFLLLLLVGIPLGITTGVMQH 103
Query: 127 TLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD---------W------ 171
D I+ LA+ +P FWL +L+ L F + LG LP+SG + W
Sbjct: 104 KAADRIISGLALLGFLLPVFWLALLMTLFFFLHLGWLPVSGRFELLYPALMDAWFVHSPY 163
Query: 172 ---------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYK 222
+H+ILP L L + + RL R + DV ++YI A +GLP V+ +
Sbjct: 164 REEMIASAIQHMILPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRR 223
Query: 223 HALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLII 282
H L NAL P++ + LQ + ++TE VF WPG+G LV AI Q+D+ + A V+++
Sbjct: 224 HLLHNALPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGGWLVNAIRQQDFAAISAGVMVV 283
Query: 283 GVLTVIANFLADITYTIIDP 302
G L + N L+DI + +P
Sbjct: 284 GALVITINVLSDILGAMANP 303
>gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; DppB1 [Halobacterium
sp. NRC-1]
Length = 363
Score = 149 bits (373), Expect = 4e-35
Identities = 107/358 (29%), Positives = 173/358 (47%), Gaps = 52/358 (14%)
Query: 1 MKKEWIIKKILSLLIPIFIVSV-FSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLD 59
M + I K L L +P+ + + +F IL+L P DP +LG+ AT LG+
Sbjct: 1 MNRPLYIAKRLLLGVPVLLFGLTLTFLILYLGPIDPVLAILGKDATPTAARNLEISLGIR 60
Query: 60 RP------LYIQYIDWMSKVLRGDFGTS--LVQGVPVSELIAGRLSYTLKLTVTAWIIAW 111
P L++QY +++ ++ DFGTS + + PV+ +I GRL T+ L + ++A
Sbjct: 61 YPNGSLVPLWVQYKNFLVNMVTFDFGTSWAIARDQPVAAMIVGRLPATIWLGFWSVLVAL 120
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILL--ILIFGVKL--------- 160
G+ G+ A + ++ DY + + +MP FWL ++L +L G L
Sbjct: 121 FVGIPVGLYAGLNSNSWSDYAASFGGIVWRAMPNFWLAVMLSGLLTAGGVLDGYGDFLIK 180
Query: 161 ---------------GILPISGPGDWRHLILPSLTLG---------LPQVAVIA------ 190
GI P +G +P LG LP V+
Sbjct: 181 TDVVGTSNALQHLFSGIDPFAGVPVLEFFWIPVPNLGPMAEAFKWILPAALVLGSSSMGN 240
Query: 191 --RLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAV 248
R+ R +L+ L +Y+ TA+AKG+ R ++ KH RNA+IPL+ + + L GG+V
Sbjct: 241 EVRIGRTAVLESLRSEYVDTAKAKGVSPRRIIVKHIGRNAVIPLLPVIMGEFYLLIGGSV 300
Query: 249 VTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
+ E VF G+GNL + A F D PV+ ++V I ++ ++ N L D+ YT IDPR+ +
Sbjct: 301 LVEKVFSINGIGNLFIRAAFNSDIPVMMSLVFIFILMQILFNLLQDVLYTYIDPRITL 358
>pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 149 bits (372), Expect = 5e-35
Identities = 98/328 (29%), Positives = 163/328 (48%), Gaps = 25/328 (7%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLG-----EFATEEQLAKFRHQL- 56
K ++I +++ + + I F I L P DP +L + T E + K R +
Sbjct: 5 KSYLIPRLIQYVYMVVIGITLVFLIPRLSPVDPIEQILNTRLRIQNTTPEAVIKMREVME 64
Query: 57 ---GLDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWV 112
GL L+ QY++ ++L+GDFG S+V V LI L +T+ L +I+WV
Sbjct: 65 ELYGLKGTLWEQYVNLWKRLLKGDFGPSMVYYPASVISLIRNSLPWTIGLLTLTTLISWV 124
Query: 113 FGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD-- 170
GLV G + YK + I+ + + +PY+ + L+L+F I P+ G
Sbjct: 125 LGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLFCYVFPIFPLGGGFSVG 184
Query: 171 ------W-------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPER 217
W +H LP+L+L + A T+ + ++ E+DY++ AR GL
Sbjct: 185 QKISLSWSFILDVIKHGTLPALSLIILGFAGWGLGTKILVQNLREEDYVVYARMMGLRNS 244
Query: 218 MVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQA 277
+++ + LRNA++P VT + L + +FGGA++TE +F +PG+G L A+ DY V+ A
Sbjct: 245 KILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIGTLAYNAVRANDYNVMIA 304
Query: 278 IVLIIGVLTVIANFLADITYTIIDPRVR 305
I + A + D+ Y +IDPR+R
Sbjct: 305 ISFFSIIAVATALLILDLLYPLIDPRIR 332
>gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 342
Score = 148 bits (371), Expect = 6e-35
Identities = 102/334 (30%), Positives = 169/334 (50%), Gaps = 32/334 (9%)
Query: 1 MKKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA----------TEEQLA 50
M+++++IK+ + +I F+ F + LIPG ++ ++++
Sbjct: 1 MRRDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQ 60
Query: 51 KFRHQLGL---DRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTA 106
QLGL +PLYIQY +++ +++ +FG SL + V VS +I +T + + A
Sbjct: 61 ILVQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPA 120
Query: 107 WIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPIS 166
+ ++ G + G +AA+ + + DY ++ L +F + P F G +LI + + L I P
Sbjct: 121 IVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTG 180
Query: 167 G--------------PGDWR---HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTA 209
G P W H ILP+LTL L +A R NM+ +L++DY+
Sbjct: 181 GQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYY 240
Query: 210 RAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQ 269
R G+ E+MV K A R AL+P T + + + GAV E +F + G+G AI
Sbjct: 241 RLMGVSEKMVASK-AYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITG 299
Query: 270 RDYPVVQAIVLIIGVLTVIANFLADITYTIIDPR 303
DYP++ I ++ V++NF+ADI YTIIDPR
Sbjct: 300 LDYPLLSGIFFMLVTAMVLSNFVADIIYTIIDPR 333
>gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 323
Score = 143 bits (358), Expect = 2e-33
Identities = 89/299 (29%), Positives = 153/299 (50%), Gaps = 17/299 (5%)
Query: 11 LSLLIPIFIVSVFSFSILHLIPGDPARYLLGE---FATEEQLAKFRHQLGLDRPLYIQYI 67
L L+I + +V+ +F +L P DP R +G EQ A+ + GLD+PL+ ++
Sbjct: 9 LRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLHVPPEQYARIAARWGLDQPLWERFG 68
Query: 68 DWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHT 127
W ++L+GD G S++ +PV+ +I R + + L AW+++ V G+ G LA + H
Sbjct: 69 HWFWRLLQGDMGYSMLFNMPVASVIRERFATSFALLAGAWLLSGVLGVTLGFLAGRFLHR 128
Query: 128 LFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPIS---GPGD----------WRHL 174
D ++ ++ S+P FW+ +L + L +LP+ PG+ RHL
Sbjct: 129 WPDKMICRISYLLSSLPTFWIAMLSGAVCR-PLAVLPVCCAWDPGNNAGTALLSERLRHL 187
Query: 175 ILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVT 234
+LP L L + IA TR + V++ ++I ARA+G ++ LR+A+ P +
Sbjct: 188 VLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQGDKGWSLLRHQVLRHAITPALC 247
Query: 235 YMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLA 293
F + L GGA++ E VF +PG+G + A + D P++ IVL +L N ++
Sbjct: 248 LQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFCTLLVFAGNTIS 306
>emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma
acidophilum]
Length = 331
Score = 141 bits (353), Expect = 8e-33
Identities = 89/320 (27%), Positives = 159/320 (48%), Gaps = 19/320 (5%)
Query: 6 IIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLG--EFATEEQLAKFRHQLGLDRPLY 63
I +KI+ ++ I V V + + ++PG P L + TE++ QLGL +
Sbjct: 12 ITRKIIQDVVLIIFVVVILYVVFRIMPGSPVDLFLHGLKHPTEQEKITIEKQLGLYGGKF 71
Query: 64 --IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLA 121
++ ++ + +FG G V +I L YTL L +A +I++ G+ G+
Sbjct: 72 SLTNFLIYLRDMFTFNFGEDYYTGQSVIFVIKQALPYTLLLFGSAAVISFAIGIPLGIYT 131
Query: 122 AVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLT- 180
+ + + ++T + S+P+F I+ + L I P+ +++ P+L
Sbjct: 132 SFKRGKKSESGIITASTLLNSIPFFVFAIIFFVYLAGDLHIFPLRSIFPISYIVHPTLKS 191
Query: 181 -------LGLPQVAVIA-------RLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALR 226
L +P + ++ RA M+ VL +D+I TARAKG+ ER +++ HA R
Sbjct: 192 IELILYYLAMPIIVLVIVEAAGHLLTMRAAMVSVLGEDFITTARAKGVSERGIMFHHAAR 251
Query: 227 NALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLT 286
NA+IP+ T M L+ +L GAV+ E +F GMG +L A Q DYPV + + +I ++
Sbjct: 252 NAMIPVSTRMALEFAFLMSGAVIVEVIFSIHGMGTVLYDATLQEDYPVSEGALFVISIIV 311
Query: 287 VIANFLADITYTIIDPRVRI 306
++A D + +DPR+++
Sbjct: 312 ILAYSAIDFIHAWLDPRIKV 331
>pir||A72537 probable oligopeptide transport permease protein APE1582 -
Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1|
(AP000062) 363aa long hypothetical oligopeptide
transport permease protein [Aeropyrum pernix]
Length = 363
Score = 140 bits (350), Expect = 2e-32
Identities = 85/269 (31%), Positives = 138/269 (50%), Gaps = 32/269 (11%)
Query: 69 WMSKVLRG----DFGTSLVQGVPVSELIAGRLSYTLKLT----VTAWIIAWVFGLVFGML 120
W K+++ DFG + + + +I L +K T +TA +I + G++ G
Sbjct: 91 WTVKLIKSNITFDFGVTQYSYIGGTNVIGDILLLAMKNTAILFLTATLITFAIGIILGFQ 150
Query: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG----------PGD 170
A ++FD + + S P +W+ I++ILIF L + P P D
Sbjct: 151 MARKPGSIFDRGLSVFGMISWSFPTWWVAIIMILIFSFYLRLFPAQAQYVYFELSKLPPD 210
Query: 171 -------------W-RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
W +++ +P +T+ L + L R +L +L++D++ ARA+GLPE
Sbjct: 211 LPLFEKIVEQAKIWLKYMTMPVMTIVLVSFGGASYLIRNIVLGILQEDFVTAARARGLPE 270
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
R V+Y H LR + P+VTY+ L I FGGA++TE VFGWPGMG + +AI Q D V+
Sbjct: 271 RRVIYGHVLRTSSPPIVTYLALSIVGAFGGAIITEAVFGWPGMGLVYWIAIQQSDAKVLV 330
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVR 305
A ++ V ++ + D Y+++DPRVR
Sbjct: 331 ASTWVLTVFFILTILILDFIYSLLDPRVR 359
>emb|CAC17495.1| (AL450432) putative metal transport integral membrane protein
[Streptomyces coelicolor]
Length = 316
Score = 140 bits (349), Expect = 2e-32
Identities = 98/309 (31%), Positives = 155/309 (49%), Gaps = 19/309 (6%)
Query: 8 KKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQYI 67
+++ ++ + ++S F+ ++PGD + G A+E Q A+ R +LGLDRP +Y
Sbjct: 9 RRLAEAVVLLVLLSAAVFAATAVLPGDAVSAVAGVDASETQRAEVRAELGLDRPAVQRYA 68
Query: 68 DWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTL-----KLTVTAWIIAWVFGLVFGMLAA 122
DW + +RGD G V PV++++ RL +L L VTA +A + GL G+
Sbjct: 69 DWAAGAVRGDLGRGFVGERPVADVLTTRLPNSLLLAGLTLAVTA-PLATLLGLWTGLRGG 127
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGV------KLGILPISG-PGDWRH-L 174
V D +V T A ++P F + LL+ + V ++ ++P+ G P D L
Sbjct: 128 VA-----DRVVSTSAQILAAVPEFVVAALLVAVLAVWLEVLPRVSVIPLGGTPLDVPDAL 182
Query: 175 ILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVT 234
+LP LTL +AV RL RA++ D + Y AR G+ + +H L NA P V
Sbjct: 183 VLPVLTLSAVGLAVATRLLRASVADTAARPYCEAARLNGVRGVRLAVRHILPNAAGPAVQ 242
Query: 235 YMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLAD 294
+ L L G AVV E VF +PG+G L +A+ RD P+VQ I + + + L D
Sbjct: 243 ALTLTTGALVGSAVVVENVFDYPGIGRELQLAVAARDVPMVQGIATALVAVMLAVLLLGD 302
Query: 295 ITYTIIDPR 303
+ ++ R
Sbjct: 303 VCARLLGAR 311
>sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB
>gi|7442459|pir||A64987 hypothetical 40.4 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide
transport system permease protein OppB. [Escherichia
coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative
transport system permease protein [Escherichia coli K12]
Length = 364
Score = 138 bits (345), Expect = 7e-32
Identities = 85/292 (29%), Positives = 147/292 (50%), Gaps = 20/292 (6%)
Query: 36 ARYLLGEFATEEQLAKFRHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGR 95
+ Y G E +A+ H+ G D+P++ +Y + +R DFG SL + V LI
Sbjct: 73 SNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDS 132
Query: 96 LSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILI 155
L ++ L + + +I ++ + G+ AVY + FD + ++P F ILLI+
Sbjct: 133 LPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVF 192
Query: 156 F--GVKLGILPISGPGD----------------WRHLILPSLTLGLPQVAVIARLTRANM 197
F G + P+ G W H+ LP L + A + LT+ +
Sbjct: 193 FAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLW-HITLPVLATVIGGFAALTMLTKNSF 251
Query: 198 LDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVT-YMFLQIPWLFGGAVVTETVFGW 256
LD + K Y++TARAKG+ E+ +++KH RNA++ ++ + I F G+++ E +F
Sbjct: 252 LDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSL 311
Query: 257 PGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVRIMG 308
G+G L A RDYPV+ + I ++ ++ N ++DI+YT++DPR+ G
Sbjct: 312 NGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEG 363
>pir||T45279 oligopeptide transport membrane protein bldKC [imported] -
Streptomyces coelicolor >gi|1532203|gb|AAB09556.1|
(U68036) BldKC [Streptomyces coelicolor A3(2)]
Length = 323
Score = 138 bits (344), Expect = 9e-32
Identities = 88/322 (27%), Positives = 161/322 (49%), Gaps = 21/322 (6%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLY 63
+++I++ ++ + ++S F+F + IP D G+ + L LG D+P+
Sbjct: 3 QFLIRRSFGAVLILVLISAFTFFMFFAIPQD-RMLACGKNCNPDALEIIHKNLGFDQPVT 61
Query: 64 IQYIDWMSKVLRGD-----------FGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWV 112
+QY +++ + G FG S V + I R T+ LTV + I+ +
Sbjct: 62 VQYWHFLAGIFTGREFAVGHCDAPCFGVSFANNQNVWDTILDRFPLTVSLTVGSLIVFLI 121
Query: 113 FGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGIL------PIS 166
GL G+LAA + T D + + ++ S+ F LG L++L G L PIS
Sbjct: 122 VGLGAGLLAAKNRGTWIDKVFSSGSLVVSSLQIF-LGPLVLLALVYSTGWLQKPKYVPIS 180
Query: 167 --GPGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHA 224
G + L+LP + + A AR++R++M++ L+++++ ARAKG+ +++A
Sbjct: 181 EDAAGWFAGLLLPWIVMATIFTANYARMSRSSMIEQLQEEHVRAARAKGMSSNYTFFRYA 240
Query: 225 LRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGV 284
R +L+P+VT + + + L GG +VTE FG G+G +D P++ ++L+
Sbjct: 241 WRGSLVPIVTILGIDLSALMGGGMVTEMTFGLAGIGRSRWSRSINKDLPMLMGVMLVSAA 300
Query: 285 LTVIANFLADITYTIIDPRVRI 306
L ++ N + D Y +IDP R+
Sbjct: 301 LIIVFNLIVDAMYAVIDPASRL 322
>pir||E82442 probable peptide ABC transporter, permease protein VCA0590
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658001|gb|AAF96492.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 360
Score = 135 bits (337), Expect = 6e-31
Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 54/353 (15%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA-------------------- 44
+I++++L ++ ++ + +F I+ + PG P + +
Sbjct: 4 YILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAP 63
Query: 45 TEEQLAKFR--------------HQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSE 90
T+ ++ ++ + G D+P++ +Y + +FG SL +G V +
Sbjct: 64 TDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVID 123
Query: 91 LIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGI 150
LI RL ++ L + + ++ ++ + G+ A++ + FD + + ++P F I
Sbjct: 124 LIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAI 183
Query: 151 LLILIF--GVKLGILPISGPGD----------------WRHLILPSLTLGLPQVAVIARL 192
+LI++F G P+ G W HL LP+L + + A ++ L
Sbjct: 184 ILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFW-HLTLPTLAMVIGGFATLSML 242
Query: 193 TRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVT-YMFLQIPWLFGGAVVTE 251
T+ + LD + K Y++TARAKGL ER ++YKH RNA++ ++ + I F G+++ E
Sbjct: 243 TKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSMLIE 302
Query: 252 TVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
+F G+G L A QRDYP+V + + I+ +L ++ + ++D+TY +DPR+
Sbjct: 303 VMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
>pir||C82876 oligopeptide transport system permease protein UU562 [imported] -
Ureaplasma urealyticum
>gi|6899568|gb|AAF30975.1|AE002154_11 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 377
Score = 133 bits (331), Expect = 3e-30
Identities = 84/301 (27%), Positives = 149/301 (48%), Gaps = 5/301 (1%)
Query: 7 IKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRPLYIQY 66
+K I + +IV +F +++ +PG+ A L + E Q GLDRP+ ++Y
Sbjct: 76 LKLIAEFFLLAWIVITITFFLINSVPGESA--LTIGITSPEAKKAILAQYGLDRPIGVRY 133
Query: 67 IDWMSKVLRGDFG--TSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVY 124
+++++ + RG+FG TS+ GV ++ I R + + + + ++ V G+ G+
Sbjct: 134 VNYLANIFRGEFGVSTSIRPGVEINSFIWSRYLVSFAVGIFSVLLTLVIGIPLGIFVGRK 193
Query: 125 KHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWRHLILPSLTLGLP 184
+ D + + ++P G++L+LI G ++G+ ++ ILP L L L
Sbjct: 194 PGGILDSVSTVIISVISAVPSLVFGLILLLI-GKEVGLPFTFDINNFVTYILPGLALSLG 252
Query: 185 QVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLF 244
+ V + + M L + A KG V+ HAL+ +L P+ T+ I F
Sbjct: 253 SIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFVWLHALKPSLFPIATFFPFVILGSF 312
Query: 245 GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
GA+ E +F PG G+L AI +DY V+ +V+I ++T+I + D Y IIDPR+
Sbjct: 313 VGALFIEQIFQIPGSGSLFFEAIISKDYNVILLLVIIYSLITIIGYTIRDALYQIIDPRI 372
Query: 305 R 305
R
Sbjct: 373 R 373
>dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus]
Length = 320
Score = 132 bits (329), Expect = 5e-30
Identities = 83/310 (26%), Positives = 150/310 (47%), Gaps = 17/310 (5%)
Query: 10 ILSLLIPIFIVSVFSFSILHLI---PGDPARYLLGE---FATEEQLAKFRHQLGLDRPLY 63
+L LL ++ V I+ L+ P DP LG + EQ H LG +
Sbjct: 6 LLILLRTFLLLVVTVMGIVLLVSHSPTDPVNEFLGGNVFSVSSEQRDNIAHILGTNMSEL 65
Query: 64 IQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAV 123
+ DW+ ++ G++G S PVS+++ R +L L + +W + FG G++A +
Sbjct: 66 DRLTDWLVQMTHGEWGYSNYYQQPVSDVLKERSGNSLNLLIFSWSLTLCFGYALGLVAGL 125
Query: 124 YKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGP-----------GDWR 172
+ + + +P FW+GI+LI IF +KL P+ G G+ +
Sbjct: 126 KNKSTLGKCLYYGSWILSCLPSFWVGIILIAIFALKLHWFPVGGATSLSIVNSTWQGNLQ 185
Query: 173 HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPL 232
H+ILP + L L + + T+ ++ +L+ DY+ A+ +P++ ++ ++ ++ +L+P
Sbjct: 186 HMILPIVCLVLVGIGPLILHTKEKVVSLLDSDYVKYAQMHQIPKKRLICQYLIKGSLVPT 245
Query: 233 VTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFL 292
VT F L G AV+ E+VF +PG+GN V + +D ++ A+ L ++ N
Sbjct: 246 VTLHFAAFAELLGNAVLIESVFNYPGLGNAFVYSGLTKDSHLLLALSLCTTLMIATGNAF 305
Query: 293 ADITYTIIDP 302
A+I I P
Sbjct: 306 ANIIQRISQP 315
>emb|CAA20250.1| (AL031231) putative peptide transport system integral membrane
protein [Streptomyces coelicolor A3(2)]
Length = 229
Score = 129 bits (322), Expect = 3e-29
Identities = 82/223 (36%), Positives = 116/223 (51%), Gaps = 17/223 (7%)
Query: 9 KILSLLIPIFIVSVFSFSILHLIPGDPARYLLG-EFATEEQLAKFRHQLGLDRPLYIQYI 67
K+ + +F V V SF + LIPGDP +++ G + EQLA +R + GLD PL+ Q+
Sbjct: 4 KLAGAAVSLFAVLVTSFFLFRLIPGDPVKFMTGGRPVSAEQLAVYREEFGLDLPLWEQFT 63
Query: 68 DWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAAVYKHT 127
D+ K L GD GTS PV + I L TL LT TA+++ G G +A
Sbjct: 64 DYCGKALSGDLGTSYQFHAPVVDKITEALPNTLLLTGTAFVLYTALGAFLGTRSAWRHGG 123
Query: 128 LFDYIVMTLAVFFMSMPYFWLGILLILIFGVKL----GILPISGPGDWR----------- 172
L D + LA+ S+P FWLG+LLI++ V + G+ P G R
Sbjct: 124 LGDRLNTGLALTLYSIPSFWLGLLLIIVLSVGVDPIPGLFPTGGMESGREEGFAHVLDVA 183
Query: 173 -HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGL 214
HL+LP +TL + +TR+ +LD + DY+ TARAKGL
Sbjct: 184 HHLVLPVVTLVAVEYGQTLLVTRSALLDEMGSDYLTTARAKGL 226
>emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB)
related protein [Thermoplasma acidophilum]
Length = 340
Score = 129 bits (321), Expect = 4e-29
Identities = 93/330 (28%), Positives = 160/330 (48%), Gaps = 27/330 (8%)
Query: 4 EWIIKKILSLLIPIFIVSV-FSFSILHLIPGDPARYLLGEFATEEQLA---KFRHQLGLD 59
++IIKKI SL IFI ++ +F + ++PG+PA + E + HQL ++
Sbjct: 12 KYIIKKI-SLFFGIFIGAITVNFLLPRMMPGNPAVVVYNEILKAGGSGVNPAYLHQLEVE 70
Query: 60 -----RPLYIQYIDWMSKVLRGDFGTSLV-QGVPVSELIAGRLSYTLKLTVTAWIIAWVF 113
P+Y QY ++ + G+ G S+ PVS ++A L +TL L +++ I++
Sbjct: 71 YGISNAPIYDQYFQYLWNLFHGNLGLSIAFYPEPVSAILAEALPWTLFLVISSITISFFL 130
Query: 114 GLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDWR- 172
G G A + ++T D + A+F S P F L +++ IF V I P+ G
Sbjct: 131 GNRLGRYAGINRNTSKDLAIDVFAMFMASFPAFVLAFIVLDIFSVYGHIFPLGGAYGVNV 190
Query: 173 --------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERM 218
H +LP LT+ L + R N++ L D+I + G +
Sbjct: 191 NMGFNVPFIISVIYHAVLPVLTIILTSLGGWVLGMRNNIIPNLNSDFINYSENLGFKDYQ 250
Query: 219 VVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAI 278
+ A +NAL+P +T + I G ++ E++F +PG+G ++ AI DYP++Q I
Sbjct: 251 IK-SIAYKNALLPNLTGFAMSIGLSVSGVIIEESIFSYPGVGLYMITAINSLDYPLMQGI 309
Query: 279 VLIIGVLTVIANFLADITYTIIDPRVRIMG 308
L++ + + N + D+ Y +DPR+R G
Sbjct: 310 FLMVVIAVLAGNLVVDLLYGFLDPRIRQEG 339
>sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMIC
>gi|98016|pir||S11150 amiC protein - Streptococcus
pneumoniae >gi|47344|emb|CAA35214.1| (X17337) AmiC
protein [Streptococcus pneumoniae]
Length = 498
Score = 127 bits (316), Expect = 2e-28
Identities = 67/202 (33%), Positives = 115/202 (56%), Gaps = 4/202 (1%)
Query: 108 IIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGI---LP 164
++A+ + G A +K+T D + F +++P L + ++ + G + + P
Sbjct: 292 VLAYALAVPLGSAMARFKNTWIDSLSTGALTFLLALPTIAL-VYIVRLIGSSIALPDSFP 350
Query: 165 ISGPGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHA 224
I G GDWR +LP++ LGL A R M+D+ +D++ ARAKGL E+ + KH
Sbjct: 351 ILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGLSEKEISNKHI 410
Query: 225 LRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGV 284
+NA++PLV+ + I + GGA +TETVF +PGMG +L+ ++ + +V +V I
Sbjct: 411 FKNAMVPLVSGIPAAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTC 470
Query: 285 LTVIANFLADITYTIIDPRVRI 306
+++ + L DI TIIDPR+++
Sbjct: 471 ISIFSRLLGDIWMTIIDPRIKL 492
>gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp.
NRC-1]
Length = 326
Score = 127 bits (316), Expect = 2e-28
Identities = 78/320 (24%), Positives = 162/320 (50%), Gaps = 18/320 (5%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGD-PARYLLGEFAT----EEQLAKFRHQLG 57
K +I+K++L + ++I +F +L P + ++ A+ ++ ++R +
Sbjct: 2 KWYIVKRVLWTFVVMWIALTLTFGLLVASPDTGQTKSVMSCSASGGDAQQCREQYRERQN 61
Query: 58 LDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
LD+P+ +Y+++++ + ++G S + V I+ YT + + +++ + G
Sbjct: 62 LDKPITERYVNYVTNMATLNWGWSESRSQSVMAAISEAWPYTAQYAIPVLVVSTILGYGL 121
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGI--------LPI---- 165
G+ +A +T DY+ + F +S+P FW ++LI++ G +PI
Sbjct: 122 GLYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLGTHFEFISTYYQSGIPINQGW 181
Query: 166 SGPGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHAL 225
+ + L++PS L +A R +RA ++ + ++++ A+AKG + ++ H
Sbjct: 182 ASMANITQLLIPSFVLLTASLAWQMRYSRAQAIEQMNQEFVKVAKAKGASQWRLMIHHVF 241
Query: 226 RNALIPLVTYMFLQIPWLF-GGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGV 284
R A +PL T + +F G+V+ E +F PG+G + AI ++D +V A +I
Sbjct: 242 RMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMTFTAITEQDTTLVLATTMITVF 301
Query: 285 LTVIANFLADITYTIIDPRV 304
L +I N + D++YTI+DPR+
Sbjct: 302 LAIIGNLIEDVSYTILDPRI 321
>pir||D72059 peptide ABC transporter, permease protein, probable CP0150
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376893|gb|AAD18737.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
Length = 493
Score = 120 bits (299), Expect = 2e-26
Identities = 83/272 (30%), Positives = 140/272 (50%), Gaps = 26/272 (9%)
Query: 62 LYIQYIDWMSKVLRGDFGT--SLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
L ++ +MS+VLR DFGT + +SE+I RL +L L++ I+ +V +FGM
Sbjct: 220 LETRFARYMSRVLRLDFGTLRNDAHKTVISEVIK-RLRCSLVLSILPMIVGFVLCQIFGM 278
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYF----WLGILLILIFGVKLGILPI------SGPG 169
+ A+ ++ D+ + + + S+P F W+ ++ + +P+ S P
Sbjct: 279 IMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKTIPFTTIPMPYSGLRSPPE 338
Query: 170 DWR-------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
+ H LP + +A +RL+R+ L+VL +D+I A+A+GL
Sbjct: 339 VFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRW 398
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
++YKH +NA + +VT + + L GGA+V ET+F G GN AI RD+ VV
Sbjct: 399 FDILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVL 458
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRIMG 308
VL+ L+++ L DI Y ++DPRV++ G
Sbjct: 459 FSVLVGSALSLVGYLLGDICYVLLDPRVQLEG 490
>dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 493
Score = 120 bits (299), Expect = 2e-26
Identities = 83/272 (30%), Positives = 140/272 (50%), Gaps = 26/272 (9%)
Query: 62 LYIQYIDWMSKVLRGDFGT--SLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
L ++ +MS+VLR DFGT + +SE+I RL +L L++ I+ +V +FGM
Sbjct: 220 LETRFARYMSRVLRLDFGTLRNDAHKTVISEVIK-RLRCSLVLSILPMIVGFVLCQIFGM 278
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYF----WLGILLILIFGVKLGILPI------SGPG 169
+ A+ ++ D+ + + + S+P F W+ ++ + +P+ S P
Sbjct: 279 IMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKTIPFTTIPMPYSGLRSPPE 338
Query: 170 DWR-------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
+ H LP + +A +RL+R+ L+VL +D+I A+A+GL
Sbjct: 339 VFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRW 398
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
++YKH +NA + +VT + + L GGA+V ET+F G GN AI RD+ VV
Sbjct: 399 FDILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVL 458
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRIMG 308
VL+ L+++ L DI Y ++DPRV++ G
Sbjct: 459 FSVLVGSALSLVGYLLGDICYVLLDPRVQLEG 490
>sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|2146483|pir||S73942 oligopeptide transport system
permease protein oppB - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674318|gb|AAB96264.1| (AE000058)
oligopeptide transport system permease protein OppB
[Mycoplasma pneumoniae]
Length = 389
Score = 115 bits (286), Expect = 6e-25
Identities = 71/272 (26%), Positives = 134/272 (49%), Gaps = 13/272 (4%)
Query: 44 ATEEQLAKFRHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKL 102
A + QL F G + PL ++Y + + G GT + +++ GR+ TL +
Sbjct: 30 AVKTQLDAF----GFNDPLIVRYGRYWQTLFSGSLGTYYSSPNQTIDQIVFGRVPNTLYV 85
Query: 103 TVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFG----- 157
+ ++ I + G++FGM++ +++ L D ++ L V F+S+P F +G+ L+ G
Sbjct: 86 VLISFFIGSLLGIIFGMISGLFRGKLIDAVINVLVVLFVSIPSFVVGLGLLKAAGLFRLP 145
Query: 158 ---VKLGILPISGPGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGL 214
+ + I+P L+L A R +++V+ +DYI TAR+KGL
Sbjct: 146 PRFINFDDANFNFGNFLLASIIPILSLVFYTSAAFTYRVRNEVVEVMNQDYIKTARSKGL 205
Query: 215 PERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPV 274
V H RN++IP V I F G + E++FG G+ +L+ ++ + +
Sbjct: 206 STFAVALYHIFRNSIIPSVPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQSNETNL 265
Query: 275 VQAIVLIIGVLTVIANFLADITYTIIDPRVRI 306
V ++ I + ++A+ ++ Y ++DPR+RI
Sbjct: 266 VMFNIMFIQGIPLLASVFIELIYVLVDPRIRI 297
>emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 500
Score = 115 bits (284), Expect = 1e-24
Identities = 61/198 (30%), Positives = 109/198 (54%), Gaps = 4/198 (2%)
Query: 112 VFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGI---LPISGP 168
+ GL G+ A +K+T FD F +++P + I ++ G +G+ P+ G
Sbjct: 297 IVGLPLGLFMARFKNTYFDRFSTATMTFMLALPSIAV-IYVVRFLGGMVGLPDSFPMLGA 355
Query: 169 GDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNA 228
D + ILP+L LG+ + R ++D+ D++ AR+KGL E + H +NA
Sbjct: 356 SDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNA 415
Query: 229 LIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVI 288
++P+V+ + I GGA +TETVF +PGMG +L+ +I + ++ + I VL+++
Sbjct: 416 MVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIV 475
Query: 289 ANFLADITYTIIDPRVRI 306
+ L DI T++DPR+++
Sbjct: 476 SLLLGDIVMTLVDPRIKL 493
>gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus
solfataricus]
Length = 333
Score = 114 bits (283), Expect = 1e-24
Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 17/263 (6%)
Query: 57 GLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
G ++PLY+Q+I ++ + + G V + L YT+ LT+ +I + +V
Sbjct: 74 GFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFIFQTLLAIV 133
Query: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISG--------- 167
G AA+ ++ D+I+ + ++P F++ +L ++F V + +PISG
Sbjct: 134 VGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISGIQVLHLNDI 193
Query: 168 ----PGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKH 223
W I+ G P ++ R T M+DVL+ D++ AR GL E V
Sbjct: 194 VSILKVYWLPWIIQVFIFGFPVRGILMRNT---MVDVLDSDFVKYARLSGLKES-TVRAI 249
Query: 224 ALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIG 283
A RN++IP++T + + ++ GG E +FG PGMG L ++A + + P++ +
Sbjct: 250 ARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPLLTGSFFFLT 309
Query: 284 VLTVIANFLADITYTIIDPRVRI 306
+ ++ + D+ Y ++DPR+++
Sbjct: 310 LYALVVLYAMDLIYPLVDPRIKL 332
>pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2314415|gb|AAD08295.1|
(AE000630) oligopeptide ABC transporter, permease
protein (oppB) [Helicobacter pylori 26695]
Length = 348
Score = 114 bits (283), Expect = 1e-24
Identities = 80/341 (23%), Positives = 156/341 (45%), Gaps = 42/341 (12%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQ---------------- 48
+I+K++L ++ + + +F ++ PG P ++ + +
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 49 ------LAKFRHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKL 102
L + G D+P+ +Y+ + K L+ DFG S + + V +LI +L ++ L
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123
Query: 103 TVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFG----- 157
+ + ++ ++ + G+ A + D + + + ++P F ++LI+ F
Sbjct: 124 GLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNYW 183
Query: 158 --------VKLGILPISGPGDWR----HLILPSLTLGLPQVAVIARLTRANMLDVLEKDY 205
V +S G + H+ LP L + L A + L + + LD + K Y
Sbjct: 184 HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMGKLY 243
Query: 206 IMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ--IPWLFGGAVVTETVFGWPGMGNLL 263
+++A+AKG + Y H RNA++ LV F Q + F +++ E VF G+G L
Sbjct: 244 VLSAKAKGCSVGRIFYAHVFRNAIL-LVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLG 302
Query: 264 VMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
+I RDYPVV + I +L ++A+ ++D+ +IDPR+
Sbjct: 303 YESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>pir||C71841 probable peptide ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide
ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 113 bits (280), Expect = 3e-24
Identities = 80/341 (23%), Positives = 155/341 (44%), Gaps = 42/341 (12%)
Query: 5 WIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQ---------------- 48
+I+K++L ++ + + +F ++ PG P ++ + +
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 49 ------LAKFRHQLGLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKL 102
L + G D+P+ +Y+ + K L+ DFG S + + V +LI +L ++ L
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123
Query: 103 TVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFG----- 157
+ ++ ++ + G+ A + D + + + ++P F ++LI+ F
Sbjct: 124 GFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNYW 183
Query: 158 --------VKLGILPISGPGDWR----HLILPSLTLGLPQVAVIARLTRANMLDVLEKDY 205
V +S G + H+ LP L + L A + L + + LD + K Y
Sbjct: 184 HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMGKLY 243
Query: 206 IMTARAKGLPERMVVYKHALRNALIPLVTYMFLQ--IPWLFGGAVVTETVFGWPGMGNLL 263
+++A+AKG + Y H RNA++ LV F Q + F +++ E VF G+G L
Sbjct: 244 VVSAKAKGCSVGRIFYAHVFRNAIL-LVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLG 302
Query: 264 VMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304
+I RDYPVV + I +L ++A+ ++D+ +IDPR+
Sbjct: 303 YESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>pir||G81668 peptide ABC transporter, permease protein, probable TC0764
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190789|gb|AAF39567.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 492
Score = 112 bits (278), Expect = 5e-24
Identities = 81/270 (30%), Positives = 138/270 (51%), Gaps = 26/270 (9%)
Query: 62 LYIQYIDWMSKVLRGDFGT--SLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
L ++ ++S+++R DFGT + VSE+I RL +L L++ I+ +V VFGM
Sbjct: 219 LETRFAKYLSRIIRLDFGTLRNDCHKTVVSEVIK-RLGSSLVLSLLPMIVVFVLCQVFGM 277
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGI------LPISG----PG 169
+ AV K+ D+++ L + S+P F +I F + + +P SG P
Sbjct: 278 IMAVNKNRWIDHLLNFLFLILFSIPVFVAVPWIIDNFVLNKTVPFTSISMPYSGLCSSPE 337
Query: 170 DWR-------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
++ H LP + A +RL+RA L+VL +D+I RA+G+ +
Sbjct: 338 VFKDMTSLEKLIDIVLHSFLPFCAVSYGAFAAQSRLSRAVFLEVLGEDHIPALRARGISQ 397
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
++ +H +N+ L+T + + L GGA+V ET+F G G AI RD+ VV
Sbjct: 398 YDILIRHVGKNSAATLITSLASSLSALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVM 457
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRI 306
V++ V+++I + DI Y ++DPRV++
Sbjct: 458 FSVIMGSVISLIGYLIGDICYVLLDPRVQL 487
>pir||D71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328914|gb|AAC68079.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 492
Score = 111 bits (275), Expect = 1e-23
Identities = 80/270 (29%), Positives = 138/270 (50%), Gaps = 26/270 (9%)
Query: 62 LYIQYIDWMSKVLRGDFGT--SLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGM 119
L ++ ++S+++R DFGT + VSE+I RL +L L++ I+ ++ VFGM
Sbjct: 219 LETRFAKYLSRIVRLDFGTLRNDCHKTVVSEVIK-RLGSSLILSLLPMIVVFILCQVFGM 277
Query: 120 LAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGI------LPISG----PG 169
+ AV K+ D+++ L + S+P F +I F + + +P SG P
Sbjct: 278 IMAVNKNHWIDHLLNFLFLILFSIPVFVAVPWIIDNFVLNKTVPFTSISMPYSGLCSSPE 337
Query: 170 DWR-------------HLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPE 216
++ H LP + A +RL+RA L+VL +D+I RA+G+ +
Sbjct: 338 IFKEMTSFEKLTDIVLHSFLPFCAVSYGAFAAQSRLSRAVFLEVLGEDHISALRARGISQ 397
Query: 217 RMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQ 276
++ +H +N+ L+T + + L GGA+V ET+F G G AI RD+ VV
Sbjct: 398 YDILVRHVGKNSAATLITSLASSLSALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVM 457
Query: 277 AIVLIIGVLTVIANFLADITYTIIDPRVRI 306
V++ V+++I + DI Y ++DPRV++
Sbjct: 458 FSVIMGSVISLIGYLIGDICYVLLDPRVQL 487
>emb|CAA68074.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 381
Score = 111 bits (274), Expect = 1e-23
Identities = 77/335 (22%), Positives = 161/335 (47%), Gaps = 34/335 (10%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLL-GEFATEEQ----LAKFRHQLGL 58
++I+++I ++ +FI+S+F + ++ +P L +F ++ + H+L +
Sbjct: 3 KYILQRIAFAILTLFIISIFVYVLVAAFGNNPVNDLAQAQFQASKKSGLTYTEILHKLEI 62
Query: 59 DR------------PLYIQYIDWMSKVL-RGDFG--------TSLVQGVPVSELIAGRLS 97
+ P+ ++Y ++M + +GDFG + +++L L
Sbjct: 63 ENGLRYKDNPDVLVPIIVRYGNYMKNIFTKGDFGFLYNPANNPNSALYTNMAKLFFTPLQ 122
Query: 98 YTLKLTVTAWIIAWVFGLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFG 157
Y+L +TV + I+ + G+ G++A + FD + F+++P F L ++I I
Sbjct: 123 YSLIITVPTFFISSILGIAIGVIAGYKRGKWFDVSSNVFVLIFVAIPSFILAPIVITI-S 181
Query: 158 VKLGILPI-SGPGDWRHLIL------PSLTLGLPQVAVIARLTRANMLDVLEKDYIMTAR 210
V LGI + PG+ ++ P + + +A TR ++ VL ++++ A+
Sbjct: 182 VALGISSVVPRPGEQSFGVMFVSYLPPIFVMSITSLAGYVTYTRNQVITVLTSNFVLIAK 241
Query: 211 AKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQR 270
KGL + +K+ LRN IPL + +F L G+++ E + PG ++V A
Sbjct: 242 TKGLSSSQIFFKYVLRNISIPLFSLVFGSFIGLLSGSIIIEQYWQVPGTSQIIVNAFPTG 301
Query: 271 DYPVVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
+ VV L +++IA+ + D++Y I+DP+++
Sbjct: 302 EINVVMFSTLFFTFISLIADIIIDVSYAILDPKIK 336
>sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1361737|pir||E64208 oligopeptide transport system
permease protein oppB homolog - Mycoplasma genitalium
>gi|1045754|gb|AAC71295.1| (U39688) oligopeptide ABC
transporter, permease protein (oppB) [Mycoplasma
genitalium]
Length = 407
Score = 104 bits (256), Expect = 2e-21
Identities = 76/318 (23%), Positives = 151/318 (46%), Gaps = 20/318 (6%)
Query: 4 EWIIKKILSLLIPIFIVSVFSFSILHLIPGDP--ARYLLGEFATEEQLAKFRHQLGLDRP 61
++I+K++ ++ +FIV F +++ P A A + QL +F G + P
Sbjct: 3 KYILKRLGLAVVAMFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQLQEF----GFNDP 58
Query: 62 LYIQYIDWMSKVLRGDFGTSLVQ----GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVF 117
+ ++Y + +K+ + + E++ R+ TL + + +++I + G+
Sbjct: 59 IIVRYFRYWAKLFSFQADALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLGIFL 118
Query: 118 GMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILP---------ISGP 168
GM++ + + D + L V F+S+P F +G+ L+ + G L + P S
Sbjct: 119 GMVSGLNRGKFLDAAINVLVVLFVSIPSFVVGLGLLKLAGF-LNLPPRFINFDDAFFSFD 177
Query: 169 GDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNA 228
I+P L+L A R +++V+ +DYI TA++KGL V H RN+
Sbjct: 178 RFLLASIIPILSLVFYSSAAFTYRIRNEVVEVMNQDYIKTAKSKGLGMFAVARYHIFRNS 237
Query: 229 LIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVI 288
+IP + I F G + E++FG G+ +L+ ++ + +V +L I + ++
Sbjct: 238 IIPSIPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQVNETNMVMFNILFIQGIPLL 297
Query: 289 ANFLADITYTIIDPRVRI 306
A+ + Y ++DPR+RI
Sbjct: 298 ASVFIEFIYVLVDPRIRI 315
>gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 322
Score = 101 bits (249), Expect = 1e-20
Identities = 76/319 (23%), Positives = 139/319 (42%), Gaps = 27/319 (8%)
Query: 18 FIVSVFSFSILHLIPGDPARYLL-------------GEFATEEQLAKFRHQLGLD-RPLY 63
F+V +F + L+PG ++ G A ++++ GL P Y
Sbjct: 5 FVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAAFGLTPAPWY 64
Query: 64 IQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGMLAA 122
+QY ++ + + G S+ PV +I L +TL L V IIA+ G G +A
Sbjct: 65 VQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFLGSYLGSIAG 124
Query: 123 VYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----------- 171
+ + D +++ + ++P F + + L + V+ GI IS P
Sbjct: 125 FNRRSRKDLVILIITSILAALPSFVILMYLEMWLSVQHGIFLISFPSKINTSPNSIMALS 184
Query: 172 RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIP 231
R LP + L ++ R NML + +Y+ A GL + K +N+L+P
Sbjct: 185 RFYTLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLDHNRI-RKMVYKNSLLP 243
Query: 232 LVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANF 291
+T + + ++ E + PG+G +A+ +D P++Q I L I ++ +++
Sbjct: 244 NITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQGIFLFIAIMLILSIA 303
Query: 292 LADITYTIIDPRVRIMGGE 310
+ + YTI+DPR R+ E
Sbjct: 304 IVEAIYTILDPRARVSESE 322
>pir||B70193 oligopeptide ABC transporter, permease protein (oppB-2) homolog -
Lyme disease spirochete >gi|2688676|gb|AAC67087.1|
(AE001174) oligopeptide ABC transporter, permease
protein (oppB-2) [Borrelia burgdorferi]
Length = 326
Score = 79.6 bits (193), Expect = 5e-14
Identities = 78/327 (23%), Positives = 156/327 (46%), Gaps = 35/327 (10%)
Query: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPA-----------RYL--LGEFATEEQL 49
K +I K + LLI + S F S+++L + YL +G + + E+
Sbjct: 2 KIFIFKNTIYLLINLICASFFCVSLVNLFSNEQQYTPFVKTNVIKNYLQYIGVYKSIERY 61
Query: 50 A---KFRHQLGLDRPLYIQYIDWMSKV---------LRGDFGTSLV-QGVPVSELIAGRL 96
A F + L++ ++++I S + L GD SL+ +G P +++I ++
Sbjct: 62 ALIHDFNPKSKLEKDCFLKHIAGNSYIIYKTKNEGMLWGDHRYSLLSKGKPTTKIIFQKI 121
Query: 97 SYTLKLTVTAWIIAWVFGLVFGMLAAVY-KHTLFDYIVMTLAVFFMSMPYFWLGILLILI 155
TLK+++ +++++ ++ ++ +Y K+ L + I+ L + SMP L + LIL
Sbjct: 122 FNTLKISIPGALLSYIAAIILIIIWKIYIKNNLINNILEYLMLLLHSMPRN-LTVFLILS 180
Query: 156 FGVKLGILPISGPGDWRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLP 215
L + P ++LI+ + + + ++ L + YI A+++G+
Sbjct: 181 LIYYLNLNP-------KNLIMGGFAWFFSFFIFNSVIFKQSLDKTLSEFYIKAAKSRGIN 233
Query: 216 ERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVV 275
+ ++ KHAL ++ PL+T M I F GA + E++F G+G L + A+ DY +
Sbjct: 234 KLQIILKHALIPSITPLLTNMRPIITTAFFGASMIESMFEIDGIGALYLNALKFNDYAIS 293
Query: 276 QAIVLIIGVLTVIANFLADITYTIIDP 302
+ ++ I + +I N + DI I+P
Sbjct: 294 KDLIFIGVFIMLIPNIITDILIYKINP 320
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.147 0.456
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114282425
Number of Sequences: 2977
Number of extensions: 4729842
Number of successful extensions: 15952
Number of sequences better than 1.0e-10: 141
Number of HSP's better than 0.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 15539
Number of HSP's gapped (non-prelim): 168
length of query: 310
length of database: 189,106,746
effective HSP length: 49
effective length of query: 261
effective length of database: 159,780,883
effective search space: 41702810463
effective search space used: 41702810463
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)