BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0093 (dppC-1) DE:dipeptide ABC transporter,
dipeptide-binding protein
(287 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75202 dipeptide abc transporter, dipeptide-binding protein... 570 e-161
sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 284 7e-76
dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permeas... 283 1e-75
pir||E72289 oligopeptide ABC transporter, permease protein - The... 276 3e-73
sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 274 7e-73
dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) ... 273 2e-72
pir||D64557 dipeptide ABC transporter, permease protein - Helico... 270 2e-71
gi|11499358 dipeptide ABC transporter, permease protein (dppC) [... 261 9e-69
sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 259 2e-68
sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 255 5e-67
sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 255 5e-67
pir||C38447 sporulation initiation protein spo0KC - Bacillus sub... 252 4e-66
pir||D83082 probable permease of ABC transporter PA4504 [importe... 249 3e-65
sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 248 5e-65
dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permeas... 243 1e-63
sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 242 4e-63
emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter... 242 4e-63
emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis] 239 3e-62
sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 233 2e-60
dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [O... 231 8e-60
pir||E75454 peptide ABC transporter, permease protein - Deinococ... 231 1e-59
pir||G72215 oligopeptide ABC transporter, permease protein - The... 228 9e-59
gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T... 227 1e-58
pir||H72451 probable peptide transport system permease protein A... 224 8e-58
pir||T34756 oligopeptide transport integral membrane protein - S... 223 2e-57
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 222 5e-57
pir||D82242 oligopeptide ABC transporter, permease protein VC109... 221 9e-57
pir||C72617 probable dipeptide transport system permease protein... 219 3e-56
pir||A75118 dipeptide abc transporter, permease protein (dppc) P... 217 1e-55
pir||E71014 probable dipeptide transport system permease protein... 212 3e-54
pir||D71130 probable oligopeptide transport permease protein APP... 212 4e-54
gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; Dp... 212 4e-54
pir||E72720 probable oligopeptide transport system permease prot... 211 1e-53
dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permeas... 210 1e-53
dbj|BAB04288.1| (AP001509) nickel transport system (permease) [B... 210 2e-53
sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 206 2e-52
sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 204 9e-52
sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 204 1e-51
pir||E72371 oligopeptide ABC transporter, permease protein - The... 199 4e-50
pir||C72367 oligopeptide ABC transporter, permease protein - The... 198 7e-50
sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 197 1e-49
pir||C82356 peptide ABC transporter, permease protein VC0173 [im... 197 1e-49
gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [... 195 5e-49
gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis] 194 1e-48
gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T... 194 1e-48
dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Ba... 192 4e-48
gb|AAC69839.1| (AF076683) oligopeptide transporter putative memb... 192 5e-48
pir||D72424 oligopeptide ABC transporter, permease protein - The... 192 5e-48
pir||T45277 oligopeptide transport integral membrane protein bld... 191 9e-48
sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 189 3e-47
gb|AAB38742.1| (U78885) transport system permease homolog [Liste... 189 4e-47
pir||JC5121 oligopeptide permease-like protein - Synechococcus s... 188 6e-47
pir||A75381 peptide ABC transporter, permease protein - Deinococ... 188 6e-47
pir||D72300 oligopeptide ABC transporter, permease protein - The... 188 8e-47
pir||C75573 peptide ABC transporter, permease protein - Deinococ... 187 1e-46
pir||S75778 oligopeptide transport system permease protein appC ... 187 2e-46
pir||D82170 peptide ABC transporter, permease protein VC1682 [im... 185 4e-46
pir||D70431 oligopeptide transport system permease - Aquifex aeo... 184 9e-46
emb|CAC05749.1| (AL391751) putative peptide transport system int... 183 2e-45
sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 183 3e-45
dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus] 182 3e-45
pir||D70141 oligopeptide ABC transporter, permease protein (oppC... 182 5e-45
gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola] 181 8e-45
gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borre... 181 1e-44
pir||T03434 probable transport protein accE - Agrobacterium tume... 180 2e-44
gi|10954944 Probable accE [Agrobacterium tumefaciens] >gi|649829... 180 2e-44
pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC... 175 6e-43
pir||T35981 probable peptide transport permease - Streptomyces c... 174 1e-42
gb|AAC69844.1| (AF076684) oligopeptide transporter putative memb... 173 2e-42
emb|CAC11409.1| (AL445063) probable dipeptide transport system p... 172 5e-42
gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-... 171 7e-42
pir||T44599 oligopeptide transport system permease protein [impo... 170 2e-41
gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1] 169 3e-41
dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permeas... 166 3e-40
pir||F72107 peptide ABC transporter, permease protein CP0567 [im... 166 4e-40
dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila ... 166 4e-40
sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 164 1e-39
gi|10954709 hypothetical ABC-transporter gene~similar to dppC ge... 163 2e-39
sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 162 3e-39
gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae] 162 4e-39
emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methan... 161 1e-38
pir||G75529 peptide ABC transporter, permease protein - Deinococ... 161 1e-38
pir||C72282 oligopeptide ABC transporter, permease protein - The... 159 5e-38
emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi] 158 6e-38
gb|AAG20459.1| (AE005118) oligopeptide transport permease protei... 155 6e-37
gb|AAC18098.1| (AF058302) membrane component of putative ABC tra... 153 2e-36
pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain ... 153 3e-36
sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 152 4e-36
pir||A70789 probable peptidetransport system permease - Mycobact... 152 5e-36
pir||B75142 oligopeptide transport integral membrane protein. PA... 151 8e-36
pir||T35940 probable transport permease protein - Streptomyces c... 150 2e-35
sp|P45287|SAPC_HAEIN PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 149 3e-35
pir||D71545 probable oligopeptide permease - Chlamydia trachomat... 149 3e-35
pir||A83389 probable permease of ABC transporter PA2060 [importe... 149 4e-35
pir||E83419 probable permease of ABC transporter PA1808 [importe... 148 7e-35
pir||D82442 probable peptide ABC transporter, permease protein V... 147 2e-34
pir||H71211 probable oligopeptide transport system permease prot... 146 3e-34
pir||H72536 probable oligopeptide transport system permease prot... 146 4e-34
pir||G81699 peptide ABC transporter, permease protein TC0473 [im... 145 5e-34
pir||H75026 oligopeptide abc transporter, permease protein (appc... 144 1e-33
pir||F71957 ABC transporter, permease - Helicobacter pylori (str... 143 2e-33
pir||F82301 peptide ABC transporter, permease protein VC0618 [im... 143 3e-33
pir||C64551 oligopeptide ABC transporter, permease protein - Hel... 143 3e-33
pir||C71163 probable oligopeptide transport system permease prot... 139 3e-32
pir||B82876 oligopeptide transport system permease protein UU561... 137 2e-31
gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; Dp... 136 3e-31
gb|AAC67219.1| (U78968) transmembrane transport protein DppC [St... 136 4e-31
sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 134 1e-30
pir||B72284 oligopeptide ABC transporter, permease protein - The... 134 1e-30
emb|CAA68075.1| (X99740) oligopeptide transport system permease ... 132 6e-30
gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana] 131 8e-30
gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus sol... 129 3e-29
gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S7... 129 4e-29
sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 129 5e-29
pir||C71510 probable oligopeptide permease - Chlamydia trachomat... 126 3e-28
pir||T35054 probable transport system permease protein - Strepto... 125 5e-28
pir||G72428 oligopeptide ABC transporter, permease protein - The... 125 8e-28
pir||F81668 peptide ABC transporter, permease protein, probable ... 123 3e-27
pir||D81253 probable peptide ABC-transport system permease prote... 122 5e-27
pir||C72059 peptide ABC transporter, permease protein, probable ... 120 2e-26
emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyo... 120 3e-26
gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus] 116 2e-25
gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus sol... 116 3e-25
pir||G82377 ABC transporter, permease protein VCA1100 [imported]... 115 7e-25
gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonel... 113 3e-24
emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related prote... 111 1e-23
emb|CAC17496.1| (AL450432) putative transport system integral me... 111 1e-23
dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus] 105 6e-22
emb|CAC12448.1| (AL445067) oligopeptide transport system, permea... 104 1e-21
pir||A72421 oligopeptide ABC transporter, permease protein - The... 102 4e-21
pir||C72393 oligopeptide ABC transporter, permease protein - The... 96 5e-19
sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 80 2e-14
sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 78 2e-13
emb|CAC00365.1| (AL160371) probable hypothetical ABC transporter... 73 5e-12
>pir||E75202 dipeptide abc transporter, dipeptide-binding protein PAB0093 -
Pyrococcus abyssi (strain Orsay)
>gi|5457577|emb|CAB49068.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 287
Score = 570 bits (1452), Expect = e-161
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MRRKVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLK 60
MRRKVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLK
Sbjct: 1 MRRKVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLK 60
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI
Sbjct: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI
Sbjct: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL
Sbjct: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKVS 287
MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKVS
Sbjct: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKVS 287
>sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|11277274|pir||T44637 dipeptide transport protein
dppC [imported] - Bacillus firmus
>gi|1813497|gb|AAB41690.1| (U64514) dipeptide
transporter protein dppC [Bacillus firmus]
Length = 304
Score = 284 bits (720), Expect = 7e-76
Identities = 140/278 (50%), Positives = 198/278 (70%)
Query: 10 SMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFG 69
S W + + KKNKL ++GL II ++L+AIFAP + S E + +RL+ P ++WFG
Sbjct: 27 SPWREAFKQLKKNKLAIVGLIIITSFILIAIFAPLLTSSSYAETNPSNRLQGPSAEHWFG 86
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+FGRDIF+RIVYG+R++L VG + G TLGLI+GY+G +D +I R DI+
Sbjct: 87 TDDFGRDIFTRIVYGARLSLQVGFFAVTGALIFGTTLGLIAGYYGRWIDMLISRIFDIML 146
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGES 189
AFP+++LA+AIVAILGP L NA+IAIA+V + R+VR++ +S++EE FI AA+A G
Sbjct: 147 AFPSILLAIAIVAILGPSLQNALIAIAIVNVPIFGRLVRSKVISLREEEFIMAAKAQGMK 206
Query: 190 DLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYV 249
+ RI+F +ILPN ++ I+V T +AI+ A++L FLGLGAQ P P+WG MLS +R ++
Sbjct: 207 NGRIIFHHILPNSLAPIIVQATLGFGTAILEAAALGFLGLGAQAPMPEWGKMLSDSRQFI 266
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKVS 287
APW +FPG +IM +VLGFN +GDGLRDA+ P+ S
Sbjct: 267 QSAPWTVLFPGFSIMLVVLGFNMIGDGLRDALDPKMKS 304
>dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 301
Score = 283 bits (717), Expect = 1e-75
Identities = 132/273 (48%), Positives = 195/273 (71%)
Query: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTD 71
W + + KNK M+GL +IIF+++VA+ P+ + P E ++ ++L P ++WFGTD
Sbjct: 26 WKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHDPYEPNVMNKLAEPSAEHWFGTD 85
Query: 72 EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAF 131
GRDIF+RI++G I L VG ++ A +GV LG++SGY+G VD +IMR +D++ AF
Sbjct: 86 HHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYGRLVDTVIMRIMDVLLAF 145
Query: 132 PALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191
P ++LALAI++ILG + N +IA+ + +AR+VR TL+V++ +I+A +A+G SD
Sbjct: 146 PGILLALAIISILGGSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGASDA 205
Query: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTR 251
RI+F +ILPNV+S I+V T +I ++I+TAS+LSFLGLGAQPP P+WG MLS R Y+
Sbjct: 206 RIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYMYD 265
Query: 252 APWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
AP ++FPGLAI+ +VL FN GDGLRDA+ P+
Sbjct: 266 APHVALFPGLAIVVVVLAFNIFGDGLRDALDPK 298
>pir||E72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981701|gb|AAD36229.1|AE001772_8 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 301
Score = 276 bits (698), Expect = 3e-73
Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)
Query: 2 RRKVKKGESMWHLTWLRFKKNK--LGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRL 59
R KV E ++ + F++ L +G+ I++F++ +AIFAP +APY P + + L
Sbjct: 11 RSKVVVSERIFRPVFKLFRRRTGVLAFVGMIILLFYIFLAIFAPVLAPYDPTVR-VGRSL 69
Query: 60 KPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDE 119
+PP EK+ FGTD GRDIFSR++YGSRIAL+V + +I++AIG+ LGLISGY GG D
Sbjct: 70 QPPSEKHLFGTDNLGRDIFSRVIYGSRIALMVAFLAVVIASAIGIPLGLISGYVGGIFDR 129
Query: 120 IIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELF 179
++ +D V++FP LILA+A+ A+LGPG++N ++IA+V +Y RVVR + SVK EL+
Sbjct: 130 VLTLVMDAVYSFPGLILAIAVAAVLGPGMMNIAVSIAVVYAPTYFRVVRNQVTSVKNELY 189
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+EAARA+G D IL Y+LPNV SI+V+++ N+ AI+T + LSFLGLG PP+PDWG
Sbjct: 190 VEAARALGAKDWEILVKYVLPNVFPSIVVVLSMNLADAIMTEAGLSFLGLGIAPPTPDWG 249
Query: 240 LMLSSA-RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
LS+ R ++RA W +FPGLAI+T VLGF+ +GL + + P
Sbjct: 250 FDLSNGQRFILSRAWWGVLFPGLAIITSVLGFSMFSEGLSEILNP 294
>sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLID
>gi|7442415|pir||H64820 probable oligopeptide transport
protein b0832 - Escherichia coli
>gi|1787054|gb|AAC73919.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062409|dbj|BAA35527.1| (D90721) Transmembrane
protein dppC [Escherichia coli]
>gi|4062417|dbj|BAA35535.1| (D90722) Transmembrane
protein dppC [Escherichia coli]
Length = 303
Score = 274 bits (694), Expect = 7e-73
Identities = 132/274 (48%), Positives = 189/274 (68%), Gaps = 1/274 (0%)
Query: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKP-PCEKYWFGT 70
WH W RF++ + M +I ++VAIFA +IAPY D L P ++WFG
Sbjct: 27 WHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGV 86
Query: 71 DEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWA 130
D GRDIFSR++ G++I+L G+ I AAIG LGL++GY+ G D +IMR D+++A
Sbjct: 87 DSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFA 146
Query: 131 FPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESD 190
FP ++LA+A+VA+LG G+ N +IA+A+ ++AR+VR TL +K++ FIE+AR+IG SD
Sbjct: 147 FPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASD 206
Query: 191 LRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVT 250
+ +L +ILP +SSI+V T I ++II+A+SLSFLGLGAQPP+P+WG ML+ AR +
Sbjct: 207 MTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMV 266
Query: 251 RAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
AP ++FP LAI VL FN +GDGLRDA+ P+
Sbjct: 267 IAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPK 300
>dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 306
Score = 273 bits (691), Expect = 2e-72
Identities = 132/280 (47%), Positives = 196/280 (69%), Gaps = 2/280 (0%)
Query: 7 KGESM--WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCE 64
KGE++ W + + +KNKL M G+ I+ F++ +A+FAP + +S RL+ P
Sbjct: 24 KGEAISPWRDAFRQLRKNKLAMTGIVIVCFFLFIALFAPLLTTHSFDGYDAASRLQSPSA 83
Query: 65 KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRA 124
++WFGTD+ GRD+F+RI YG++++L VG + +G LG+++GY+G +D +I R
Sbjct: 84 EHWFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVLAGYYGRWLDMLISRI 143
Query: 125 VDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
DI+ AFP+++LA+AIVAILGP L NAM+AIA+V + R+VR++ +S++ E FI AAR
Sbjct: 144 FDIMLAFPSILLAIAIVAILGPSLHNAMVAIAIVNIPIFGRLVRSKVISLRAEEFIMAAR 203
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
A G + RILF +ILPN +S I+V T +AI+ A++L FLGLGAQ P +WG ML+
Sbjct: 204 AQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKMLAD 263
Query: 245 ARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+R Y+ APW +IFPG++IM +VLGFN +GDGLRDA+ P+
Sbjct: 264 SRAYIQTAPWVAIFPGMSIMLVVLGFNMIGDGLRDALDPK 303
>pir||D64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313398|gb|AAD07369.1| (AE000548)
dipeptide ABC transporter, permease protein (dppC)
[Helicobacter pylori 26695]
Length = 285
Score = 270 bits (682), Expect = 2e-71
Identities = 128/276 (46%), Positives = 185/276 (66%), Gaps = 6/276 (2%)
Query: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKYWFGTD 71
+FKKNK ++G I++ V+ AIFAP +AP+ P Q+ +DRL P KY GTD
Sbjct: 10 QFKKNKAAVVGAWIVLLLVICAIFAPLLAPHDPYVQNAQDRLLKPIWEHGGNAKYLLGTD 69
Query: 72 EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAF 131
+ GRDI SR++YG+RI+L +GI+ I+ G LGLI+GYFGGK D IIMR +DI++A
Sbjct: 70 DLGRDILSRLIYGARISLTIGIVSMGIAVFFGTILGLIAGYFGGKTDAIIMRIMDIMFAL 129
Query: 132 PALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191
P+++L + +VA+LGP L NAM+AI VG +AR+VR+ L KE+ ++ A++ G S L
Sbjct: 130 PSILLIVIVVAVLGPSLTNAMLAIGFVGIPGFARLVRSSVLGEKEKEYVIASKINGSSHL 189
Query: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTR 251
R++ I PN + ++V T S ++ A++LSFLGLGAQPP P+WG ML ++ Y+
Sbjct: 190 RLMCKVIFPNCIIPLIVQTTMGFASTVLEAAALSFLGLGAQPPKPEWGAMLMNSMQYIAT 249
Query: 252 APWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKVS 287
APW +FPG+ I V+ FN VGDG+ DA+ P++ S
Sbjct: 250 APWMLVFPGVMIFLTVMSFNLVGDGIMDALDPKRTS 285
>gi|11499358 dipeptide ABC transporter, permease protein (dppC) [Archaeoglobus
fulgidus] >gi|7442417|pir||H69470 dipeptide ABC
transporter, permease protein (dppC) homolog -
Archaeoglobus fulgidus >gi|2648779|gb|AAB89481.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppC) [Archaeoglobus fulgidus]
Length = 286
Score = 261 bits (659), Expect = 9e-69
Identities = 129/259 (49%), Positives = 182/259 (69%), Gaps = 2/259 (0%)
Query: 28 GLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRI 87
GL III L+A+FAPFIAPY P++ +D L+PP ++ GTD GRD+FSRIV+GSR+
Sbjct: 27 GLAIIITVALMAVFAPFIAPYDPIKSG-KDVLQPPSAEHIMGTDNLGRDVFSRIVFGSRV 85
Query: 88 ALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPG 147
L V + +L+S IGV LGLISGYFGGK+D ++ +D ++AFP LILA+AI A+LGP
Sbjct: 86 VLAVVLSASLVSTVIGVPLGLISGYFGGKLDRLLSMLMDSMYAFPGLILAIAIAAVLGPS 145
Query: 148 LINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSIL 207
+ NA++AI++V +Y R++R +TLSVK LF+EAA+A G SD RI+ YI PN++ +++
Sbjct: 146 VFNAVVAISVVYVPTYFRMIRGQTLSVKSLLFVEAAKAAGASDWRIMRKYIFPNLIPTLV 205
Query: 208 VLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSI-FPGLAIMTL 266
V+ + ++ AI+T + LSFLG P+PDWG L+S R Y+ W+ I FPGL +M L
Sbjct: 206 VVFSLSVADAILTEAGLSFLGFIVSAPTPDWGFELASGRPYLPAGYWWMITFPGLMVMLL 265
Query: 267 VLGFNFVGDGLRDAIQPEK 285
LGF VG+GL + P +
Sbjct: 266 SLGFALVGEGLSEIYAPRR 284
>sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
>gi|2126890|pir||I40547 oligopeptide ABC transporter
(permease) appC - Bacillus subtilis
>gi|677947|gb|AAA62360.1| (U20909) AppC [Bacillus
subtilis] >gi|2633494|emb|CAB12997.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 303
Score = 259 bits (656), Expect = 2e-68
Identities = 129/283 (45%), Positives = 184/283 (64%), Gaps = 2/283 (0%)
Query: 6 KKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK 65
KK E+M + W +F KNKL ++G I+ ++ A+FAP IAPY +Q L D+ K P +
Sbjct: 20 KKPETMTKIFWEKFSKNKLAILGAVILFIIIMSAVFAPLIAPYPQEQQSLLDKYKAPGLE 79
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+ GTD+FGRDIFSRI+YG+R++L+VG + S IG LG ++GYF G VD +IMR V
Sbjct: 80 HLMGTDKFGRDIFSRILYGARVSLLVGFASVVGSILIGTVLGALAGYFRGIVDAVIMRVV 139
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARA 185
DIV + P + L + +V I PG+ ++ L GW + AR+VR E LS++ ++ AA+
Sbjct: 140 DIVLSIPDIFLLITLVTIFKPGVDKLILIFCLTGWTTTARLVRGEFLSLRSREYVLAAKT 199
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
IG +I+FS+ILPN + I+V T + S I+ S+LS+LG G QPP WG ML A
Sbjct: 200 IGTKTHKIIFSHILPNALGPIIVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDA 259
Query: 246 RVY--VTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKV 286
+ + + +A WY +FPGL I+ VL FNFVGDGLRDA+ P+ +
Sbjct: 260 QNFTVMIQAWWYPLFPGLFILMTVLCFNFVGDGLRDALDPKNI 302
>sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|972896|gb|AAA95973.1| (U17295) DppC [Haemophilus
influenzae] >gi|1574113|gb|AAC22839.1| (U32798)
dipeptide ABC transporter, permease protein (dppC)
[Haemophilus influenzae Rd]
Length = 295
Score = 255 bits (644), Expect = 5e-67
Identities = 125/275 (45%), Positives = 183/275 (66%), Gaps = 6/275 (2%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKYWFG 69
W FK+N+ +IGL I+ L++I AP+IAP+ P EQ+ L PP Y G
Sbjct: 18 WFYFKQNRGALIGLIFILIVALISILAPYIAPFDPTEQNRTALLLPPAWYEGGNPAYLLG 77
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRDI SRI+YG+RI++ G I+ L+S A G +LGLISGY+GG +D II+R +DI+
Sbjct: 78 TDDIGRDILSRIIYGTRISVFAGFIIVLLSCAFGTSLGLISGYYGGVLDTIIIRLIDIML 137
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGES 189
A P L+L + +V+IL P L NA +AIA+V SY R+ RA ++ K ++ +++ G
Sbjct: 138 AIPNLLLTIVVVSILEPSLANATLAIAVVSIPSYVRLTRAAMMNEKNRDYVTSSKVAGAG 197
Query: 190 DLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYV 249
LR++F ILPN ++ ++V +T I +AI+ ++L FLG+GA+PP+P+ G MLS AR ++
Sbjct: 198 ILRLMFIVILPNCLAPLIVQMTMGISNAILELATLGFLGIGAKPPTPELGTMLSEARGFM 257
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
A W PGL I++LVL FN +GDGLRDA+ P+
Sbjct: 258 QAANWLVTIPGLVILSLVLAFNLMGDGLRDALDPK 292
>sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442409|pir||A69669 oligopeptide ABC transporter
(permease) oppC - Bacillus subtilis
>gi|40007|emb|CAA39789.1| (X56347) OppC [Bacillus
subtilis] >gi|2633499|emb|CAB13002.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 305
Score = 255 bits (644), Expect = 5e-67
Identities = 122/279 (43%), Positives = 177/279 (62%)
Query: 6 KKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK 65
KK S+W LRF+ NKL M+GL II+ +L+AIFAP + Y +L + KPP +
Sbjct: 24 KKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPPSKD 83
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+WFGTD+ GRDIF R G+RI++ +G+ A++ IGV G ISG+ GG+ DEI+MR
Sbjct: 84 HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIA 143
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARA 185
DI+WA P+L++ + ++ +L GL +IA+ + GW + AR+VR + L +K + ++ A++
Sbjct: 144 DILWAVPSLLMVILLMVVLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQT 203
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
+G R+LF +I+PN M SILV +T +P+AI T + LS+LGLG P WG M S
Sbjct: 204 LGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDG 263
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+T PW FP I + GFN VGDGLRDA+ P+
Sbjct: 264 LPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPK 302
>pir||C38447 sporulation initiation protein spo0KC - Bacillus subtilis
>gi|143606|gb|AAA62690.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 305
Score = 252 bits (637), Expect = 4e-66
Identities = 121/279 (43%), Positives = 176/279 (62%)
Query: 6 KKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK 65
KK S+W L F+ NKL M+GL II+ +L+AIFAP + Y +L + KPP +
Sbjct: 24 KKSLSLWKDAMLPFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPPSKD 83
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+WFGTD+ GRDIF R G+RI++ +G+ A++ IGV G ISG+ GG+ DEI+MR
Sbjct: 84 HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIA 143
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARA 185
DI+WA P+L++ + ++ +L GL +IA+ + GW + AR+VR + L +K + ++ A++
Sbjct: 144 DILWAVPSLLMVILLMVVLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQT 203
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
+G R+LF +I+PN M SILV +T +P+AI T + LS+LGLG P WG M S
Sbjct: 204 LGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDG 263
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+T PW FP I + GFN VGDGLRDA+ P+
Sbjct: 264 LPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPK 302
>pir||D83082 probable permease of ABC transporter PA4504 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950744|gb|AAG07892.1|AE004864_4 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 303
Score = 249 bits (629), Expect = 3e-65
Identities = 123/275 (44%), Positives = 182/275 (65%), Gaps = 6/275 (2%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKYWFG 69
W F +NK + GL ++ V A+FAP++APY P EQ + L PP ++ G
Sbjct: 24 WQAFTRNKGAVGGLLFMLLIVFCALFAPWVAPYDPSEQFRDFLLTPPSWLEGGQARFLLG 83
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TDE GRD+ SR+++G+R++L++G+ +IS G+ LGL++G+ + +IMR +DI+
Sbjct: 84 TDELGRDLLSRLIHGARLSLLIGLSSVVISLVPGILLGLLAGFSPNRAGPLIMRLMDIML 143
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGES 189
A P+L+LA+AIVAILGPGLIN +IAIA+V +Y R+ RA ++ ++ A+R G
Sbjct: 144 ALPSLLLAVAIVAILGPGLINTVIAIAIVSLPAYVRLTRAAVMTELNRDYVTASRLAGAG 203
Query: 190 DLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYV 249
LR++F +LPN M+ ++V T + SAI+ A++L FLGLG QPP+P+WG ML+SAR Y+
Sbjct: 204 TLRLMFVCVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYI 263
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
RA W PGL I+ VL N +GDGLRDA+ P+
Sbjct: 264 ERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPK 298
>sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|1073368|pir||S47764 dipeptide transport system
permease protein dppC - Escherichia coli
>gi|349227|gb|AAA23704.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466681|gb|AAB18520.1| (U00039)
dppC [Escherichia coli] >gi|1789964|gb|AAC76567.1|
(AE000431) dipeptide transport system permease protein 2
[Escherichia coli K12]
Length = 300
Score = 248 bits (627), Expect = 5e-65
Identities = 123/275 (44%), Positives = 178/275 (64%), Gaps = 6/275 (2%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK------YWFG 69
W FK+NK ++GL ++ + +AIFA +IAPY+P EQ + L PP + + G
Sbjct: 23 WHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLG 82
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRD+ SR++YG+R++L+VG +V ++S +GV LGLI+GYFGG VD IIMR VDI+
Sbjct: 83 TDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIML 142
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGES 189
A P+L+LAL +VAI GP + NA +A+ V Y R+ RA L ++ A+R G
Sbjct: 143 ALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAG 202
Query: 190 DLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYV 249
+R +F I PN ++ ++V + +AI+ ++L FLG+GAQPP+P+WG MLS +
Sbjct: 203 AMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFA 262
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
A W FPGLAI+ VL FN +GDGLRDA+ P+
Sbjct: 263 QSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
>dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 243 bits (615), Expect = 1e-63
Identities = 120/277 (43%), Positives = 182/277 (65%), Gaps = 7/277 (2%)
Query: 14 LTW-LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKY 66
L W R ++K G +GL I++ +L+A FA +AP++P E + LKPP ++
Sbjct: 23 LAWGRRLIRSKTGTVGLIIVLVVLLLAAFADVLAPHNPHEVNPAMMLKPPAWLDGGSSEH 82
Query: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
+ GTD GRDI+SR+VYGSRI+L+VG+ +++ IGVT+G+++G++GG +D MR VD
Sbjct: 83 FLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWLDTAFMRLVD 142
Query: 127 IVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAI 186
+ P ++LAL I+++ GPG+ + + + W +YAR+VR E LS+KE F++AARAI
Sbjct: 143 SFLSIPNILLALVILSVFGPGVWTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKAARAI 202
Query: 187 GESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR 246
G + ++ ++LPNV+S +V+ T ++ + II +SLSFLGLG QPP WG +LS R
Sbjct: 203 GVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQPPDISWGGILSDGR 262
Query: 247 VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
Y+ + W + FPGLAI VLG F+GD LRD + P
Sbjct: 263 DYIATSWWLATFPGLAITLTVLGIIFLGDWLRDVLDP 299
>sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|98273|pir||S16649 dipeptide ABC transporter
(permease) - Bacillus subtilis
>gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus
subtilis] >gi|2633648|emb|CAB13151.1| (Z99110) dipeptide
ABC transporter (permease) [Bacillus subtilis]
Length = 320
Score = 242 bits (611), Expect = 4e-63
Identities = 110/270 (40%), Positives = 172/270 (62%), Gaps = 1/270 (0%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGR 75
W R KKNKL M GL I++F ++A+ PF++P+S V Q L ++ PP +WFGTDE GR
Sbjct: 48 WRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHSVVRQSLTEQNLPPSADHWFGTDELGR 107
Query: 76 DIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALI 135
D+F+R YG+RI+L VG++ ALI IGV G ++GY GG++D I+MR +++++ P L+
Sbjct: 108 DVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRIDSIMMRIIEVLYGLPYLL 167
Query: 136 LALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILF 195
+ + ++ ++GPGL ++A+ + GW AR+VR + L +K ++ A++ G RI+
Sbjct: 168 VVILLMVLMGPGLGTIIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTFGAKTFRIIR 227
Query: 196 SYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY 255
+LPN M +I+V +T +P+AI S LSFLGLG Q P WG+M + + W+
Sbjct: 228 KNLLPNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWW 287
Query: 256 SI-FPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ FP I + FN +GDGL+DA+ P+
Sbjct: 288 RLFFPAFFISLTMYAFNVLGDGLQDALDPK 317
>emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 301
Score = 242 bits (611), Expect = 4e-63
Identities = 116/270 (42%), Positives = 177/270 (64%), Gaps = 6/270 (2%)
Query: 21 KNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK------YWFGTDEFG 74
+NKL ++ L +++ +L A+FAP IAPY P Q+L RL+PP + + GTD+ G
Sbjct: 28 RNKLAVLALAVLVLLLLAALFAPLIAPYDPNAQNLLLRLRPPAWQDGGSGAHLLGTDQLG 87
Query: 75 RDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPAL 134
RD+ SR+V+G+R++L+VG AL++ IG +GL SGYFGG D +MR D+ AFP+L
Sbjct: 88 RDMLSRVVHGTRVSLLVGAGAALLAGVIGTVVGLASGYFGGWADRTLMRLADVQLAFPSL 147
Query: 135 ILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRIL 194
+LALA+V LG GL ++ + GW SYARVVR+E +S++ F+ ARAIG +D+ I+
Sbjct: 148 LLALAVVGFLGSGLWVVIVVLGFTGWVSYARVVRSEVMSLRTRDFVTEARAIGVTDVTIM 207
Query: 195 FSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPW 254
++LPNVM+ + + T ++ +AI+ +SLS+LGLG + WG ML+ ++Y+ + W
Sbjct: 208 RRHLLPNVMAPLATIGTLHVAAAIVAEASLSYLGLGVPKETVTWGGMLADGQLYLGTSWW 267
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
++FPG+A+M L N GD LRD P+
Sbjct: 268 VAVFPGIALMLTSLAINITGDALRDVADPK 297
>emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]
Length = 320
Score = 239 bits (604), Expect = 3e-62
Identities = 109/270 (40%), Positives = 172/270 (63%), Gaps = 1/270 (0%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGR 75
W R KKNKL M GL I++F ++A+ PF++P+S V Q L ++ PP +WFGTDE GR
Sbjct: 48 WRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHSVVRQSLTEQNLPPSADHWFGTDELGR 107
Query: 76 DIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALI 135
D+F+R YG+RI+L VG++ ALI IGV G ++GY GG++D I+MR +++++ P L+
Sbjct: 108 DVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRIDSIMMRIIEVLYGLPYLL 167
Query: 136 LALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILF 195
+ + ++ ++GPGL ++A+ + GW AR+VR + L +K ++ A++ G RI+
Sbjct: 168 VVILLMVLMGPGLGTIIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTFGAKTFRIIR 227
Query: 196 SYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY 255
+L N M +I+V +T +P+AI S LSFLGLG Q P WG+M + + W+
Sbjct: 228 KNLLRNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWW 287
Query: 256 SI-FPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ FP I + + FN +GDGL+DA+ P+
Sbjct: 288 RLFFPAFFISSTMYAFNVLGDGLQDALDPK 317
>sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDQ
>gi|7442414|pir||H64901 probable oligopeptide transport
protein b1485 - Escherichia coli
>gi|1742425|dbj|BAA15140.1| (D90789) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1742436|dbj|BAA15150.1| (D90790) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1787760|gb|AAC74558.1| (AE000245) putative transport
protein [Escherichia coli K12]
Length = 298
Score = 233 bits (588), Expect = 2e-60
Identities = 114/271 (42%), Positives = 175/271 (64%), Gaps = 1/271 (0%)
Query: 14 LTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEF 73
L W+ K + L + II+ +L+ IF+P++A + P L RL PP +WFGTDE
Sbjct: 23 LVWM-LKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEV 81
Query: 74 GRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPA 133
GRD+FSR++ GS+ +++ G++V I+ IG LG +SG GG+ D IIMR +DI+ + P+
Sbjct: 82 GRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPS 141
Query: 134 LILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRI 193
L+L +A+ A LGP L NAM+AIA+V Y R+ R + L V++ +++AA+ G S +
Sbjct: 142 LVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHL 201
Query: 194 LFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAP 253
+ +IL N + ++V + +I SAI+ A++L F+GLGAQ PS +WG M+++ R YV
Sbjct: 202 INWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQW 261
Query: 254 WYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
WY FPG AI+ +GFN GDG+RD + P+
Sbjct: 262 WYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292
>dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [Ochrobactrum
anthropi]
Length = 291
Score = 231 bits (583), Expect = 8e-60
Identities = 114/251 (45%), Positives = 162/251 (64%)
Query: 27 IGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSR 86
IG I+ LVAIFAPFIAPY P Q E L PP K+ FGTD GRD+FSR+V+G+R
Sbjct: 29 IGSAIMALLGLVAIFAPFIAPYDPNYQDFEAILVPPSLKHLFGTDNLGRDVFSRVVFGAR 88
Query: 87 IALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGP 146
I LVVG ++ + GV +G +GY GG+ D +MR +D+ AFP L+L + I+AILGP
Sbjct: 89 IDLVVGFLLTYVPMIYGVLIGAYAGYIGGRFDATLMRIIDVAMAFPFLVLIVVILAILGP 148
Query: 147 GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSI 206
G+ N IAI +V W YAR+ RAE + + + ++ AA+ +G RI+F + LPNV++S
Sbjct: 149 GIQNIYIAIFIVAWTMYARLARAEMMVERTKDYMVAAKVLGFPRSRIIFLHGLPNVINSS 208
Query: 207 LVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTL 266
+V T + I+ S LSF+GLG QPP+P+WG M++ R ++ +A W ++ PG AI+
Sbjct: 209 IVFSTSDFVLNIVLVSGLSFIGLGIQPPAPEWGSMIAEGRDFMRQAWWIAVLPGFAIVLT 268
Query: 267 VLGFNFVGDGL 277
+ +GDGL
Sbjct: 269 GMALVLIGDGL 279
>pir||E75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458682|gb|AAF10533.1|AE001948_2
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 332
Score = 231 bits (582), Expect = 1e-59
Identities = 122/321 (38%), Positives = 190/321 (59%), Gaps = 46/321 (14%)
Query: 6 KKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPV-EQHLEDRLKPPC- 63
++G+S++ W RF+++ G +G I+ +VL+A+ AP + PY P +++ LKPP
Sbjct: 11 RRGQSIF---WRRFRRSTPGKVGAIIVALFVLLALLAPVLRPYDPTTDRNYRLNLKPPSI 67
Query: 64 ---------EKY----------W---FGTDEFGRDIFSRIVYGSRIALVVGIIVALISAA 101
E Y W FGTD GRDI++R+++G+RI+L VG++ L++
Sbjct: 68 TALWDAGAKETYTDPATGKVNLWAAPFGTDNLGRDIYARVLHGTRISLKVGVVSTLLALV 127
Query: 102 IGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILG---------------- 145
IG LG+++G+FGG D ++ D++ AFP+++LA+ I
Sbjct: 128 IGTLLGVMAGFFGGWFDSVMGYLTDVLLAFPSILLAIGFATIFSSDHPPLLIKGLDRLFA 187
Query: 146 ---PGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNV 202
P L+ AM+A++LV Y R+ R+ LS++E F++AA A+G S R++F ++LPN
Sbjct: 188 LNSPQLVTAMLAVSLVQIPVYMRLARSVVLSIREREFVQAAGALGASQWRMVFKHVLPNS 247
Query: 203 MSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLA 262
+S ++V +I +A I ++L FLG+GAQPP P+WG M+S +R Y APW IFPGLA
Sbjct: 248 LSPLIVQGALSIATATIEVAALGFLGIGAQPPLPEWGTMISDSRQYYVDAPWTMIFPGLA 307
Query: 263 IMTLVLGFNFVGDGLRDAIQP 283
I VLGFN +GDGLRD + P
Sbjct: 308 IFLTVLGFNLLGDGLRDVLDP 328
>pir||G72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982326|gb|AAD36813.1|AE001813_5 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 228 bits (574), Expect = 9e-59
Identities = 111/283 (39%), Positives = 165/283 (58%)
Query: 1 MRRKVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLK 60
+R+ + W WLRFKKNK+ +IG ++ + +AI AP+IAPY E H +
Sbjct: 2 LRKNKTESIGYWKAFWLRFKKNKMAVIGGVFVLILIALAILAPYIAPYPYDEPHYIRAFE 61
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
P + + FGTD GRD+FSRI+Y R A ++G + IG LG ++G+ GG +D+
Sbjct: 62 GPSKDFIFGTDALGRDLFSRILYSLRNACIIGFGSQFVVLIIGGILGAVAGFKGGWIDKF 121
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
IM VDI++AFP + + +V LG GL +AI L GWA AR+VR + L +K F+
Sbjct: 122 IMSIVDIMFAFPTFLFNVILVTALGRGLFTIFLAIGLTGWAGMARLVRGQVLYLKNSEFV 181
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
EAA+A G S I+ +ILPN++ ILV + + +P A++T S L+ +G+G +PP P WG
Sbjct: 182 EAAKAAGASTFYIIRKHILPNMIGPILVNLAFGVPGAMMTESGLAVIGMGVRPPMPSWGN 241
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
++ + P IFP + ++ F F+ DGLRDA P
Sbjct: 242 LIGEGIGMMMAFPHLLIFPAVTFAFTLISFTFLADGLRDAFNP 284
>gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T45538 moaC
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665714|gb|AAB88474.1| (AF242881) moaC
[Agrobacterium tumefaciens]
Length = 293
Score = 227 bits (573), Expect = 1e-58
Identities = 105/257 (40%), Positives = 174/257 (66%)
Query: 27 IGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSR 86
IG+ II ++ A+ AP ++ Y P +Q+L D+L PP Y G D++GRDI +R++YG+R
Sbjct: 31 IGVIIIAVLLVAAVLAPQLSFYPPAKQNLFDQLSPPSADYLLGADQYGRDILTRLLYGAR 90
Query: 87 IALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGP 146
+L++G + +I+ IG +G+++G+ GGK+D ++M+ +D++ AFP+LIL +A+VA++G
Sbjct: 91 YSLLIGSLAVVIAMVIGTLIGMMAGFRGGKIDIVLMQIMDVILAFPSLILGIALVALMGA 150
Query: 147 GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSI 206
+ N + AIA ++ARV RA L+ ++ +++A A+G S R LF +ILP ++ +
Sbjct: 151 TMTNIIAAIAFTSVPAFARVARAAVLTQRDREYVQACSAMGFSGSRTLFRHILPAILPEV 210
Query: 207 LVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTL 266
+VL + + +A+ T +SL+F+GLG PP+P WG M+ + +P+ +IFP LAI+ L
Sbjct: 211 MVLASLWMANAVRTEASLAFVGLGIAPPAPTWGGMVRDGFTVILSSPYLAIFPSLAILLL 270
Query: 267 VLGFNFVGDGLRDAIQP 283
VL FN +GDGLRD I P
Sbjct: 271 VLAFNLIGDGLRDLIDP 287
>pir||H72451 probable peptide transport system permease protein APE2260 -
Aeropyrum pernix (strain K1) >gi|5105961|dbj|BAA81272.1|
(AP000064) 280aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 280
Score = 224 bits (566), Expect = 8e-58
Identities = 111/262 (42%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Query: 28 GLGIIIFWVLVAIFAPFIAPYSPVEQ--HLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGS 85
GL I+ F+++VA+ AP+IAPYSP + + + PP K+ FGT+E G D+FSR+V G+
Sbjct: 19 GLAIVAFYLVVALAAPYIAPYSPHSKVSDVPEHPSPPSLKHPFGTNEIGYDMFSRVVLGT 78
Query: 86 RIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILG 145
RI L V ++ +++ A+GV LGL+SGYFGG VD ++ +D ++AFP ++LA+AI ++LG
Sbjct: 79 RIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVLSVVMDSLYAFPGIVLAIAIASVLG 138
Query: 146 PGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSS 205
P ++NA IA+ +V +Y R+ RA + +K + +I A R +G RI+F ++LP VM +
Sbjct: 139 PSVLNAAIALMVVYVPAYFRMTRARVIEIKTQDYIVALRVLGAPHSRIMFRHVLPGVMPT 198
Query: 206 ILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLS-SARVYVTRAPWYSIFPGLAIM 264
+LV+ AI+T + LSF GL P+PDWGL +S + +++ + W ++FPGLAI+
Sbjct: 199 VLVVYGLASADAILTEAGLSFFGLVVTYPAPDWGLDISYGIKQFLSGSWWLTLFPGLAIL 258
Query: 265 TLVLGFNFVGDGLRDAIQPEKV 286
TL LGF +G+GL + + V
Sbjct: 259 TLALGFAMIGEGLAERFRARAV 280
>pir||T34756 oligopeptide transport integral membrane protein - Streptomyces
coelicolor >gi|3402243|emb|CAA20179.1| (AL031184)
oligopeptide transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 223 bits (563), Expect = 2e-57
Identities = 117/305 (38%), Positives = 185/305 (60%), Gaps = 24/305 (7%)
Query: 4 KVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIA------PYSPVEQHLED 57
K +G S+ + W R K++KL + G +++ ++VA+FAP I P + E ++
Sbjct: 28 KSVQGRSLGRIAWERLKRDKLALAGGIVVLVLIVVAVFAPLITSLYGQDPNAYNEDMIDP 87
Query: 58 RLKPPCE-------KYWFGTDEF-GRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLI 109
P ++W G + GRDIF+RIV+G+RI+L+VG + A+++ +G LG++
Sbjct: 88 LFGTPTGSLGGLGGEHWLGVEPVNGRDIFARIVHGARISLLVGFLSAMVAVVLGTVLGVL 147
Query: 110 SGYFGGKVDEIIMRAVDIVWAFPALILALAIVAIL----------GPGLINAMIAIALVG 159
+G+FGG VD +I R +D + AFP L+ +A+V+++ G L+ ++ I G
Sbjct: 148 AGFFGGWVDSLICRIMDGLLAFPQLLFIIALVSVMPDNMLGLSGTGVRLLMMIVVIGFFG 207
Query: 160 WASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAII 219
W RVVR +TLS++E ++EAAR++G ILF +LPN+++ I+V T IP+ I+
Sbjct: 208 WPYIGRVVRGQTLSMREREYVEAARSLGAGRFYILFKELLPNLVAPIIVYTTMMIPTNIL 267
Query: 220 TASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRD 279
T ++LSFLG+G +PP+ WG MLSSA Y P Y + PG+AI VL FN GDG+RD
Sbjct: 268 TEAALSFLGVGVKPPTSSWGQMLSSAIDYYKSDPMYMVVPGVAIFITVLAFNLFGDGVRD 327
Query: 280 AIQPE 284
A+ P+
Sbjct: 328 ALDPK 332
>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
Length = 714
Score = 222 bits (559), Expect = 5e-57
Identities = 112/279 (40%), Positives = 170/279 (60%)
Query: 3 RKVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPP 62
RK K E + RF+ N + M L ++ + F+APY P EQ P
Sbjct: 301 RKSKGSEGEFARAARRFRHNPVAMTALIFVLVVAIAGFMYSFVAPYDPNEQLDVAPFSGP 360
Query: 63 CEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIM 122
+WFGTD GRD+ SR++ G+ ++L +IV + + + + +GL SGY G D ++M
Sbjct: 361 SADHWFGTDGLGRDVLSRLLAGASVSLRFSVIVVVTALIVALPIGLFSGYIGRWPDTLLM 420
Query: 123 RAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEA 182
R ++ + +FPA++LA+AIV ILGP L+NA IA+A+ +AR++RA+ LSV+EE+FI+A
Sbjct: 421 RIMEGIHSFPAIVLAIAIVGILGPSLLNAGIAVAVAVVPGFARLIRAQALSVREEVFIDA 480
Query: 183 ARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLML 242
+RAIG RIL ++ PNV+S ++V + + A++ + LS+LGLG QPP WG ML
Sbjct: 481 SRAIGTPTRRILLRHLFPNVLSPLIVQVAVVLGFALLAEAGLSYLGLGVQPPQASWGSML 540
Query: 243 SSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
A PW + PG+AI+ +VL FN +G+GLR A+
Sbjct: 541 RQATDSQLTNPWGVLPPGIAIVLVVLAFNTIGEGLRTAL 579
>pir||D82242 oligopeptide ABC transporter, permease protein VC1093 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655562|gb|AAF94252.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 300
Score = 221 bits (557), Expect = 9e-57
Identities = 107/278 (38%), Positives = 162/278 (57%)
Query: 7 KGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKY 66
+G S+W +RF +NK M+ L +++ L +F P + YS + P ++
Sbjct: 21 QGRSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEH 80
Query: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
WFGTD GRD+F R + G RI+L+VGI+ AL++ IG G SG+ GG+ D ++MR ++
Sbjct: 81 WFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILE 140
Query: 127 IVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAI 186
I++A P + L + +V G ++ +AI + W AR+VR +TLS++ + FIEAA
Sbjct: 141 ILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVC 200
Query: 187 GESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR 246
G S I+ +I+PNV+ + V T IPS I+T S LSFLGLG Q P WG +L
Sbjct: 201 GVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGA 260
Query: 247 VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ A W +FP ++ + FN+VGDGLRDA+ P+
Sbjct: 261 NTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298
>pir||C72617 probable dipeptide transport system permease protein APE1396 -
Aeropyrum pernix (strain K1) >gi|5105079|dbj|BAA80393.1|
(AP000061) 387aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 387
Score = 219 bits (552), Expect = 3e-56
Identities = 124/328 (37%), Positives = 178/328 (53%), Gaps = 58/328 (17%)
Query: 14 LTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHL------------------ 55
LT ++ +G++G+ ++I +V++A+ P+IAP +Q +
Sbjct: 47 LTLYALNRSPIGLLGVALVIAFVIIAVIGPYIAPLGYNDQLVYCVTDFDAVRLAPPGTVV 106
Query: 56 ---EDRL------KPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTL 106
ED + +P K W G DE+GRD+ SRI+YG+R + +V I+V + IG+ L
Sbjct: 107 EVAEDSICTQLGIEPGTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWIGILL 166
Query: 107 GLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAIL----GPGLIN------------ 150
GL SGY GG VDE+IMR VD+ AFP LILA+A+ A+L P +IN
Sbjct: 167 GLFSGYRGGVVDEVIMRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTLLRLF 226
Query: 151 ---------------AMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILF 195
+IA+ +V W YAR+VR LS +E ++EAARA+G IL
Sbjct: 227 ALKPEDALPMVRLVVVVIALWIVWWPVYARLVRGMVLSARENTYVEAARALGIPTHSILL 286
Query: 196 SYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY 255
+ILPN++ +LV +T + + I+ + LSFLGLGA PP DWG ++ Y A W
Sbjct: 287 GHILPNILGPVLVYLTLDFGAVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNAWWL 346
Query: 256 SIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
FPGLAI+ VLGFN +GD LRD + P
Sbjct: 347 VFFPGLAILFTVLGFNLLGDALRDIMDP 374
>pir||A75118 dipeptide abc transporter, permease protein (dppc) PAB1873 -
Pyrococcus abyssi (strain Orsay)
>gi|5458169|emb|CAB49658.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppC) [Pyrococcus abyssi]
Length = 387
Score = 217 bits (547), Expect = 1e-55
Identities = 119/323 (36%), Positives = 175/323 (53%), Gaps = 50/323 (15%)
Query: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPY------SPVEQHLED-RLKPPCE 64
W L ++ +IGL I+I ++LV IF PF+AP+ + H ++ L PP
Sbjct: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
Query: 65 K------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGY 112
K Y G D +GRD+ S ++ G+R + V+ IIV + +G+ LGL++GY
Sbjct: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
Query: 113 FGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL------------------------ 148
+GGKVDE+IMR D+ +FPALILA+A A+L L
Sbjct: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
Query: 149 -------INAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPN 201
+ ++A+ +V W YAR+ R TL+ +E+L++EAARAIG ILF +ILPN
Sbjct: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
Query: 202 VMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGL 261
++ ILV IT + ++ + LSFLGLGA PP DWG ++ Y R W +PGL
Sbjct: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
Query: 262 AIMTLVLGFNFVGDGLRDAIQPE 284
++ LG+N +GDGLRD + P+
Sbjct: 343 VVLLTALGWNLLGDGLRDILDPK 365
>pir||E71014 probable dipeptide transport system permease protein dppC -
Pyrococcus horikoshii >gi|3257834|dbj|BAA30517.1|
(AP000006) 385aa long hypothetical dipeptide transport
system permease protein dppC [Pyrococcus horikoshii]
Length = 385
Score = 212 bits (535), Expect = 3e-54
Identities = 115/322 (35%), Positives = 172/322 (52%), Gaps = 50/322 (15%)
Query: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSP-------VEQHLEDRLKPPCE 64
W L ++ +IGL ++I ++ + IF P++AP+ + + L PP
Sbjct: 43 WRLMLYALNRSPPALIGLFLVIIFIFLGIFGPYLAPWKYNFFPTLYTSHYDQVYLVPPGS 102
Query: 65 K------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGY 112
K Y G+D +GRD+ S I+ G+R + V+ IIV + +G+ LGLI+GY
Sbjct: 103 KAVLDFYNNTVITYPLGSDHYGRDLLSLILQGARTSFVISIIVISLGVPLGIILGLIAGY 162
Query: 113 FGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL------------------------ 148
+GGK+DE+IMR D+ AFPALILA+A A+L L
Sbjct: 163 YGGKIDELIMRTTDMFLAFPALILAIAFSAVLPDRLQAFISSHEIIEKIVLAIFALDQRE 222
Query: 149 -------INAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPN 201
+ ++A+ +V W YAR+ R TL+ +E+L++EAARA+G ILF +ILPN
Sbjct: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAVGLPTRTILFKHILPN 282
Query: 202 VMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGL 261
++ ILV IT + ++ + LSFLGLGA PP DWG ++ Y R W +PGL
Sbjct: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGAVPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
Query: 262 AIMTLVLGFNFVGDGLRDAIQP 283
++ LG+N +GDGLRD + P
Sbjct: 343 IVLLTALGWNLLGDGLRDILDP 364
>pir||D71130 probable oligopeptide transport permease protein APPC - Pyrococcus
horikoshii >gi|3257219|dbj|BAA29902.1| (AP000003) 283aa
long hypothetical oligopeptide transport permease
protein APPC [Pyrococcus horikoshii]
Length = 283
Score = 212 bits (534), Expect = 4e-54
Identities = 108/265 (40%), Positives = 164/265 (61%), Gaps = 2/265 (0%)
Query: 20 KKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFS 79
K K G+IGL +++ V++A+ P + P + L PP + + GTD GRDIFS
Sbjct: 13 KYTKTGLIGLILLLVLVVIALITPLLPLPDPQSTDFQPFL-PPSKDHPMGTDNLGRDIFS 71
Query: 80 RIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALA 139
R+++G+R +L+VG++ A +SA IGV +G ++GY+GG +D+I+ R +I P LAL
Sbjct: 72 RVLWGTRTSLLVGLVAAGLSAIIGVLVGGVAGYYGGTIDDILSRITEIFLVIPGFFLALL 131
Query: 140 IVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYIL 199
+V+I G L+N MI + L+ W S AR++RA+ LS+KE FI+A R G SDLRI+ +I+
Sbjct: 132 VVSIFGSSLLNIMIVLGLLIWPSNARLMRAQALSLKEREFIQALRVAGVSDLRIVLRHII 191
Query: 200 PNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFP 259
PN + I+ + AIIT + LSF+GLG P WG M+ ++Y+T W IFP
Sbjct: 192 PNGIQPIIANTFLQMAGAIITEAGLSFIGLG-DPNVVSWGKMIYEGQIYITTYWWVPIFP 250
Query: 260 GLAIMTLVLGFNFVGDGLRDAIQPE 284
G+ ++ VL N +GDGL + P+
Sbjct: 251 GVFLVLTVLALNLLGDGLLTLLNPK 275
>gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; DppC1 [Halobacterium
sp. NRC-1]
Length = 315
Score = 212 bits (534), Expect = 4e-54
Identities = 120/274 (43%), Positives = 164/274 (59%), Gaps = 12/274 (4%)
Query: 22 NKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQH----LEDRLKPP------CEKYWFGTD 71
N+L +IGL II+ + VAI A S + + DRL P + FGTD
Sbjct: 35 NRLAIIGLTIILGMLAVAIIARVSYDLSALRASNLGTVGDRLAPGWAGSGGATQQLFGTD 94
Query: 72 EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAF 131
GRDIF R +YG+ IA+ G + S +GV LG+I+ Y+ D +IMR +D++ AF
Sbjct: 95 AAGRDIFKRTLYGAWIAIKYGTVTVAASTFLGVALGIIAAYYSDLTDNVIMRTMDVLLAF 154
Query: 132 PALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191
P+L+LALA+VAI G GL +IA+ LV +ARVVR L V E+ +IEA A+G +D
Sbjct: 155 PSLLLALALVAIFGAGLWKVVIALTLVYTPRFARVVRGAALKVLEDEYIEATEALGATDA 214
Query: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS--ARVYV 249
R+L ++ PN ++ + V T N AII ++LSFLG GA P P WGLMLS+ +
Sbjct: 215 RVLARHVFPNTLAPVTVQSTLNYGLAIIDFAALSFLGFGAAPGMPSWGLMLSNGVTNGLL 274
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
T W S+FPGL + LVLGFN +GDG+RDA+ P
Sbjct: 275 TGKWWMSLFPGLFLAILVLGFNLLGDGMRDALDP 308
>pir||E72720 probable oligopeptide transport system permease protein oppC
APE0302 - Aeropyrum pernix (strain K1)
>gi|5103941|dbj|BAA79257.1| (AP000059) 308aa long
hypothetical oligopeptide transport system permease
protein oppC [Aeropyrum pernix]
Length = 308
Score = 211 bits (531), Expect = 1e-53
Identities = 111/276 (40%), Positives = 176/276 (63%), Gaps = 10/276 (3%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAP------YSPVEQHLEDRLKPPCEKYWFGT 70
L N L +GL II ++L+A+ AP +AP Y + + + L PP K+ FGT
Sbjct: 25 LELYSNPLSRMGLIIITGFILIAVAAPLLAPPNYPDPYKIPKVYSSEPL-PPSSKHPFGT 83
Query: 71 D--EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIV 128
DI+ +++G+RI+L + +IV ++ AIGV +G IS YFGG +D I+MR ++
Sbjct: 84 SGPPGYYDIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISAYFGGIIDNILMRITEVF 143
Query: 129 WAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGE 188
+ P LILA+AI +++ L N ++A+ V W +YAR+VRAE L VK E ++EAA+ +G
Sbjct: 144 LSLPGLILAMAIASMMERSLQNMILALIAVWWPAYARIVRAEVLRVKNEPYVEAAKILGL 203
Query: 189 SDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVY 248
+ RI+ +ILPN + ++LV+ + ++ ++ AS L FLGLGAQP + +WG+M+S R +
Sbjct: 204 NTYRIIARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPGTAEWGIMISEGRNW 263
Query: 249 VTRAPWYSI-FPGLAIMTLVLGFNFVGDGLRDAIQP 283
+ + W+ + FPG+AI VLG++ +GDGLRD + P
Sbjct: 264 LLQGAWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDP 299
>dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 293
Score = 210 bits (530), Expect = 1e-53
Identities = 101/264 (38%), Positives = 162/264 (61%)
Query: 21 KNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSR 80
++K+ + L +I+ ++V +FAP AP+ P E H+E R P +Y G D GR I SR
Sbjct: 9 RDKVATLSLSVIVITIVVGLFAPVFAPHPPNEVHMELRYASPSWEYLLGNDHLGRCILSR 68
Query: 81 IVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAI 140
++YG R +++ ++ ++ IG+ LG I+GYF GKVD +IMR DI+ +FP ++ LA
Sbjct: 69 LIYGIRPSVLSVLVALFLTVLIGLVLGFIAGYFRGKVDAVIMRICDIMLSFPGYVMPLAF 128
Query: 141 VAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILP 200
+ I G GL N +IA L+ WA +AR +R + + +++ A+A G DL+I++ +I+P
Sbjct: 129 IGIFGVGLENILIAFILMKWAWFARAIRTSVMQYSQVDYVKFAKASGIHDLKIIYKHIVP 188
Query: 201 NVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPG 260
+ + V+ + +I S I+ S SFLGLG Q P +WG+ML+ AR + P + PG
Sbjct: 189 VTFADVAVISSGSISSMILQISGFSFLGLGIQAPHAEWGMMLNEARNVMFSRPELMLAPG 248
Query: 261 LAIMTLVLGFNFVGDGLRDAIQPE 284
LAI+ +V FNF+ D L+ A+ P+
Sbjct: 249 LAIIIVVAAFNFLSDALQVALDPK 272
>dbj|BAB04288.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 277
Score = 210 bits (529), Expect = 2e-53
Identities = 102/261 (39%), Positives = 168/261 (64%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRD 76
+ K K ++ I+ + L+AI AP+IAP+ P++ +L +L PP +Y GTD+ GR
Sbjct: 7 IALKSQKTVVVCSVILFVFFLLAILAPWIAPHDPIQVNLALKLLPPSWEYPLGTDQLGRC 66
Query: 77 IFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALIL 136
SR+++G+R++L ++ + S IG+ +G I+GY GG +D ++MR + V AFP L+L
Sbjct: 67 NLSRLLFGARVSLGFATLIFISSLGIGLLVGAIAGYRGGWIDSVLMRFCEGVMAFPNLVL 126
Query: 137 ALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFS 196
L +V + GPGL ++A+ +V W YAR+ R+ +S+KE+ FI AAR G S +I+
Sbjct: 127 VLGLVGLFGPGLWQVVLALVMVQWVYYARMFRSMIVSLKEQNFITAARISGSSPWKIIRR 186
Query: 197 YILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYS 256
+I+PNV+ I+V+ T + AI+ S+LSFLGLG QPP+P+WG M+ + ++ P
Sbjct: 187 HIIPNVLPPIVVIGTLEMGWAIMDISALSFLGLGIQPPTPEWGAMIHEGKSFIRSHPELM 246
Query: 257 IFPGLAIMTLVLGFNFVGDGL 277
++PG+ I+ +V+ FN +G+ L
Sbjct: 247 LYPGIMILLVVMTFNVLGESL 267
>sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442406|pir||H64871 oligopeptide transport system
permease protein oppC - Escherichia coli
>gi|1742034|dbj|BAA14777.1| (D90763) Oligopeptide
transport system permease protein OppC. [Escherichia
coli] >gi|1787498|gb|AAC74327.1| (AE000223) homolog of
Salmonella oligopeptide transport permease protein
[Escherichia coli K12] >gi|1805526|dbj|BAA16040.1|
(D90852) Oligopeptide transport system permease protein
OppC. [Escherichia coli]
Length = 302
Score = 206 bits (519), Expect = 2e-52
Identities = 102/280 (36%), Positives = 161/280 (57%), Gaps = 2/280 (0%)
Query: 7 KGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAP--YSPVEQHLEDRLKPPCE 64
+G S+W RF N+ + L +++ L I AP ++ Y + +
Sbjct: 21 EGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMES 80
Query: 65 KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRA 124
++FGTD GRD+ R+ G RI+L+VG+ AL++ +G G +SGY GGKVD ++MR
Sbjct: 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRL 140
Query: 125 VDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
++I+ +FP + + +V G ++ +AI +V W AR+VR +TLS+K + FIEAA+
Sbjct: 141 LEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQ 200
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
G S I+ +I+PNV+ ++V + +PS I+ S LSFLGLG Q P WG +LS
Sbjct: 201 VGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260
Query: 245 ARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ +PW +FP ++ + FNF+GDGLRDA+ P+
Sbjct: 261 GANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
>sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075086|pir||D64184 oligopeptide transport system
permease protein oppC - Haemophilus influenzae (strain
Rd KW20) >gi|1574677|gb|AAC22776.1| (U32792)
oligopeptide ABC transporter, permease protein (oppC)
[Haemophilus influenzae Rd]
Length = 311
Score = 204 bits (514), Expect = 9e-52
Identities = 105/280 (37%), Positives = 156/280 (55%), Gaps = 2/280 (0%)
Query: 7 KGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK- 65
+G S+W RF +NK + L I+ F ++ AP+ P++ + P +
Sbjct: 30 EGRSLWQDAKRRFFRNKAAVASLIILAFIIIFITVAPWFFPFTYEDTDWNMMSAAPTMEG 89
Query: 66 -YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRA 124
++FGTD GRD+ R G RI+L+VGI A IS IG G ISGY GGK D ++MR
Sbjct: 90 YHFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTIGTIYGAISGYVGGKTDMLMMRF 149
Query: 125 VDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
++I+ +FP + + +V + G + IAI + W AR+VR +TLS+K + F+EAA
Sbjct: 150 LEILSSFPFMFFVILLVTLFGQNIFLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEAAI 209
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
G +I+ +I+PNV+ + V + +P I+ S LSFLGLG Q P WG +LS
Sbjct: 210 VCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLILFESFLSFLGLGTQEPMSSWGALLSD 269
Query: 245 ARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ +PW IFP + + FNF+GDGLRDA+ P+
Sbjct: 270 GAAQMEVSPWLLIFPAFFLCLTLFCFNFIGDGLRDALDPK 309
>sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|72439|pir||QREBOC oligopeptide transport system
permease protein oppC - Salmonella typhimurium
>gi|47804|emb|CAA29041.1| (X05491) Opp C (AA1-301)
[Salmonella typhimurium]
Length = 302
Score = 204 bits (513), Expect = 1e-51
Identities = 101/280 (36%), Positives = 160/280 (57%), Gaps = 2/280 (0%)
Query: 7 KGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPP--CE 64
+G S+W RF N+ + L ++ L AP ++ ++ + P
Sbjct: 21 EGRSLWQDARRRFMHNRAAVASLIVLFLIALFVTVAPMLSQFTYFDTDWGMMSSAPDMAS 80
Query: 65 KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRA 124
++FGTD GRD+ R+ G RI+L+VGI AL++ +G G +SGY GGK+D ++MR
Sbjct: 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRL 140
Query: 125 VDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
++I+ +FP + + +V G ++ +AI +V W AR+VR +TLS+K + FIEAA+
Sbjct: 141 LEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQ 200
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
G S I+ +I+PNV+ ++V + +PS I+ S LSFLGLG Q P WG +LS
Sbjct: 201 VGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260
Query: 245 ARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ +PW +FP ++ + FNF+GDGLRDA+ P+
Sbjct: 261 GANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
>pir||E72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981013|gb|AAD35587.1|AE001726_21 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 313
Score = 199 bits (500), Expect = 4e-50
Identities = 117/302 (38%), Positives = 168/302 (54%), Gaps = 39/302 (12%)
Query: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPP--------------- 62
RF ++ +IG +++F+V++AI AP IAP P+ +L P
Sbjct: 11 RFFRDPSAIIGFSLVLFFVVIAILAPVIAP--PIHPLTRAKLPDPYLMPVVSWNQSPQPP 68
Query: 63 -----------------CEKYW-FGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGV 104
C Y FG GRDI IV+G+R A +G+IV L IGV
Sbjct: 69 TTKEDALAKNPNREPIRCVDYHPFGVIG-GRDILYGIVWGTRTAFKIGLIVTLARLLIGV 127
Query: 105 TLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYA 164
+G ISGYFGG +DE++MR DI + P LI A+ + +LG GL MIA+ + GW A
Sbjct: 128 FIGSISGYFGGWIDEVLMRITDIFLSIPFLIAAVVLTTVLGTGLDKVMIAMIVFGWMGAA 187
Query: 165 RVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSL 224
R++R L V+EE F+ AA+AIG D I+ ++LPN + +L+ + N+ S +ITA+ L
Sbjct: 188 RLIRGNILQVREEQFVLAAKAIGVPDFLIILKHVLPNTIFPVLIWASMNMGSLVITAAVL 247
Query: 225 SFLGLGAQPPSPDWGLMLSSARVYVTR--APWYS-IFPGLAIMTLVLGFNFVGDGLRDAI 281
SFLGLGA DWG +LS +R ++ WY+ ++PG A++ VLG+N +GD LRDA
Sbjct: 248 SFLGLGAPQGYADWGSILSYSRDWMMEIGKHWYALVYPGTAMVLFVLGWNLLGDALRDAF 307
Query: 282 QP 283
P
Sbjct: 308 DP 309
>pir||C72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981046|gb|AAD35618.1|AE001728_19 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 516
Score = 198 bits (498), Expect = 7e-50
Identities = 103/229 (44%), Positives = 146/229 (62%), Gaps = 9/229 (3%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
Y G D++GRD++SRIV+ SRI+L +G I I+ A+ + G ISGY+GG VDE +MR
Sbjct: 288 YIMGADQYGRDVWSRIVFASRISLSIGFIGMFITFALSLVFGGISGYYGGIVDEFMMRFS 347
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALV------GWASYARVVRAETLSVKEELF 179
+I+ + P L + + ++L + + + + LV GWA ARV+R LS+K+ F
Sbjct: 348 EIIMSLPGFYLLILLRSLLPLDIPSTQVYVLLVFILSFIGWAGRARVIRGMVLSIKQREF 407
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+EAARA+G D RILF ++LPN S ++V T IP I+ +SLSFLGLG + PS WG
Sbjct: 408 VEAARALGFPDTRILFRHVLPNTASYLIVAATLAIPGYILGEASLSFLGLGIREPSASWG 467
Query: 240 LMLSSAR--VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKV 286
LML+ A+ Y+T+ PW + PG+ I VL FNFVGD LRDA+ P +
Sbjct: 468 LMLAQAQNVTYMTKYPWL-LIPGIFIFITVLSFNFVGDALRDALDPRSL 515
>sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKC
>gi|628768|pir||S39596 nikC protein - Escherichia coli
>gi|581141|emb|CAA51661.1| (X73143) NikC [Escherichia
coli] >gi|912461|gb|AAB18453.1| (U00039) nikC
[Escherichia coli] >gi|1789889|gb|AAC76503.1| (AE000423)
transport of nickel, membrane protein [Escherichia coli
K12]
Length = 277
Score = 197 bits (496), Expect = 1e-49
Identities = 100/261 (38%), Positives = 155/261 (59%)
Query: 27 IGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSR 86
+ L II L+A+ + + PY P L RL P ++W GTD GRDIFSR++ +R
Sbjct: 13 LALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATR 72
Query: 87 IALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGP 146
++L + L+ +G+ +G +G GG+VD+ MR D+ FP IL+ +V +LG
Sbjct: 73 VSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGT 132
Query: 147 GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSI 206
GL N +IAIAL WA YAR+VR+ +S+++ F+ A+R G +R+ ++ V+ S+
Sbjct: 133 GLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSL 192
Query: 207 LVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTL 266
LVL T +I ++ + +SFLGLG P+ +WG+M++ AR Y+ P +PGLA+
Sbjct: 193 LVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFIS 252
Query: 267 VLGFNFVGDGLRDAIQPEKVS 287
V+ FN VGD LRD + P V+
Sbjct: 253 VMAFNLVGDALRDHLDPHLVT 273
>pir||C82356 peptide ABC transporter, permease protein VC0173 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654576|gb|AAF93349.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 312
Score = 197 bits (496), Expect = 1e-49
Identities = 106/286 (37%), Positives = 167/286 (58%), Gaps = 20/286 (6%)
Query: 19 FKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQH---LEDRLKPPC------EKYWFG 69
F ++K+ M + + +V+VAI AP IAP +P + + D PP E + G
Sbjct: 23 FLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLG 82
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TDE GRDIFS I+YGSR++L +G + + +G+ +GL +GYFGG++D +MR DI
Sbjct: 83 TDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQL 142
Query: 130 AFPALILALAIVAILGPG----------LINAMIAIALVGWASYARVVRAETLSVKEELF 179
+F +++A+ + AI ++ ++ I + W YAR VRA L+ K++ +
Sbjct: 143 SFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEY 202
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+EAAR +G RI+F +ILPN +S ILV+ T + +AI++ ++LSFLGLG P G
Sbjct: 203 VEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLG 262
Query: 240 LMLSSARVYV-TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
++S Y+ + A W + FPG+ ++ LVL N +GD LRD P+
Sbjct: 263 SLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
>gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [Listeria monocytogenes]
Length = 344
Score = 195 bits (491), Expect = 5e-49
Identities = 97/307 (31%), Positives = 171/307 (55%), Gaps = 37/307 (12%)
Query: 15 TWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHL-----EDRLKPPCEK---- 65
+WLR +KNK ++ L ++ +++AI P+++ E ++ E+ PP +
Sbjct: 35 SWLRIRKNKAALVSLIVLALVIIMAIVGPYLSQNLGPEHNINRQITENASLPPKVQGFEN 94
Query: 66 ----------------------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVAL 97
YW G+D GRD F+RI G+R++L++ ++ AL
Sbjct: 95 MPFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAAL 154
Query: 98 ISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIAL 157
IGV GLISGY GG+VD + R ++++ A P L++ + ++ IL PG+++ +IAIA+
Sbjct: 155 CDLVIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILEPGIVSIIIAIAM 214
Query: 158 VGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSA 217
W + ARVVR + L K + F+ A+ +GES +IL +++PN+ I++ I ++IPSA
Sbjct: 215 TSWITMARVVRGQVLKRKNQEFVMASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSA 274
Query: 218 IITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGL 277
I + LSF+GLG P+ G++++ + P+ ++P + + +++ FN + DGL
Sbjct: 275 IFFEAFLSFIGLGLPAPAASLGVLVNDGYKTLQVLPYMILYPCIVLCIIMIAFNLIADGL 334
Query: 278 RDAIQPE 284
RDA P+
Sbjct: 335 RDAFDPK 341
>gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]
Length = 337
Score = 194 bits (488), Expect = 1e-48
Identities = 98/304 (32%), Positives = 167/304 (54%), Gaps = 29/304 (9%)
Query: 10 SMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------ 63
+ W R ++K MIG ++ +L+AIF P ++ +S EQ L PP
Sbjct: 31 TFWQDVRRRLFQHKGAMIGFVLLSLIILLAIFGPMVSKHSYKEQDLGRAKMPPKIPVIEN 90
Query: 64 -----------------------EKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISA 100
E +WFGTD+ GRD+++R G+R++L + ++ A I
Sbjct: 91 VHWLPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDL 150
Query: 101 AIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGW 160
IGV G IS ++GG+VD I+ R ++I+ P LI+ + +V I+G G+ + +A+A+ GW
Sbjct: 151 VIGVAYGGISAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWSITLAMAITGW 210
Query: 161 ASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIIT 220
+R+VR + L +K + ++ A+R +G ++ +++ +++PNVM I+V+ + IPSA+
Sbjct: 211 IGMSRIVRGQILKLKNQEYVLASRTLGATNTQLIVKHLIPNVMGPIIVMTMFTIPSAVFG 270
Query: 221 ASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDA 280
+ LSF+GLG QPP G +++ + P P + I L+L FN + DGLRDA
Sbjct: 271 EAFLSFIGLGIQPPFASLGSLVNDGYKSIQTYPHMMFIPAVVISILILAFNLMADGLRDA 330
Query: 281 IQPE 284
+ P+
Sbjct: 331 LDPK 334
>gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T45530 probable
oligopeptide transport protein agaC [imported] -
Agrobacterium tumefaciens plasmid pTi15955
>gi|2665706|gb|AAB88466.1| (AF242881) agaC
[Agrobacterium tumefaciens]
Length = 275
Score = 194 bits (488), Expect = 1e-48
Identities = 98/253 (38%), Positives = 149/253 (58%)
Query: 31 IIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALV 90
+++ + VAI P IAP P+ + +P ++W GTDEFGRDI SR++ G R ++
Sbjct: 18 VVLAVLTVAILGPLIAPNDPLAINQNAVHQPSSAQHWLGTDEFGRDILSRLLIGIRPTML 77
Query: 91 VGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLIN 150
V +I +I+A G G+I Y + +MRAVDI+ +FPA++LAL V G+ +
Sbjct: 78 VAVISTIIAAVGGTACGIIGAYSRPTISFFVMRAVDIMLSFPAILLALLAVGFWRSGVAS 137
Query: 151 AMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLI 210
+ I ++ +ARV ++ L V + F+EA A+G LR++ ILPN++S ++V
Sbjct: 138 LSVVIGIIFIPQFARVAQSAALQVISQEFVEAEHAMGARYLRVVMRAILPNILSPLVVQA 197
Query: 211 TYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGF 270
T I +AI+ S LSFLGLG PP P WG M+ +AR Y+ + P Y ++P L + VL
Sbjct: 198 TLTIAAAILLESGLSFLGLGIVPPEPSWGQMIGTARGYLGQNPMYVVWPSLCLALTVLAI 257
Query: 271 NFVGDGLRDAIQP 283
N +GD LRD + P
Sbjct: 258 NVLGDALRDHLDP 270
>dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 283
Score = 192 bits (483), Expect = 4e-48
Identities = 102/270 (37%), Positives = 164/270 (59%), Gaps = 1/270 (0%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLV-AIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGR 75
+R KKN I I + V V A++A + P ++ +RL+ ++ GTD GR
Sbjct: 10 IRKKKNSWRAIIAFICLVVVAVSALYAFLYLRHDPTLANMGERLQGMSLQHPLGTDHLGR 69
Query: 76 DIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALI 135
D+ +R++ G++ + ++ L++ IG+ GLISGY GG VD + MR D AFP I
Sbjct: 70 DVLTRLLLGAQQTVGYSLMALLVALFIGIPFGLISGYKGGIVDRVFMRVADGFLAFPDTI 129
Query: 136 LALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILF 195
+A+ + +LGPG+ N ++AI +V W SYAR+VR+ L+ E+ ++ AR G S +I+
Sbjct: 130 VAIVLSGLLGPGIGNLVLAIVMVKWVSYARLVRSTVLTEVEKDYVAIARINGLSSSKIMR 189
Query: 196 SYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY 255
++ P+++ +LV+ T ++ I+ S+LS++GLGAQPP+P+WG ML+ +R Y P
Sbjct: 190 KHLFPHIVGHVLVMATLDLGKIILLISALSYIGLGAQPPTPEWGAMLNDSRPYFQSMPQL 249
Query: 256 SIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
I+PGLAI+ +VL N +GD LRD +K
Sbjct: 250 MIYPGLAIVIVVLLTNMLGDYLRDYFDVKK 279
>gb|AAC69839.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 289
Score = 192 bits (482), Expect = 5e-48
Identities = 94/266 (35%), Positives = 156/266 (58%)
Query: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDI 77
R ++K +I LGII+ +V + + AP + Y P ++ ++ GTD GRDI
Sbjct: 6 RLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDHLGRDI 65
Query: 78 FSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILA 137
+R++Y R +L+ + +S IG LG +SGYF G VD +IMRA D++ AFP+ ++
Sbjct: 66 LTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFPSYVVT 125
Query: 138 LAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSY 197
LA++A+ G G N ++A L WA + RV+R + + A+ IG +D++I+ +
Sbjct: 126 LALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKH 185
Query: 198 ILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSI 257
I+P ++ I ++ + ++ S I+ S SFLGLG + P+ +WG+ML+ AR + P
Sbjct: 186 IMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMF 245
Query: 258 FPGLAIMTLVLGFNFVGDGLRDAIQP 283
PG+AI+ +V+ FNF+ D L+ AI P
Sbjct: 246 APGIAIVIIVMAFNFLSDALQIAIDP 271
>pir||D72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980545|gb|AAD35153.1|AE001692_10 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 362
Score = 192 bits (482), Expect = 5e-48
Identities = 100/228 (43%), Positives = 147/228 (63%), Gaps = 9/228 (3%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+ FGTD GRD+FSRI+YG+RI+ +G++ +S +G+ +G ISGY+GGK+D I R +
Sbjct: 135 FLFGTDRLGRDVFSRILYGARISTTIGLVGVFLSMVLGIIIGGISGYYGGKIDNFIQRTI 194
Query: 126 DIVWAFPALILALAIVAILGP--GLINAMIAI----ALVGWASYARVVRAETLSVKEELF 179
+ + + P + L +A+ A L I AI +L+GW ARVVR++ LS+K+E F
Sbjct: 195 EFLISIPTIPLWMALAAALPRYWSQIKVYFAITVILSLIGWTGLARVVRSKFLSLKDEDF 254
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+ AAR G S+ RI+F ++LP++ S ++ T +IP I+ + LSFLGLG +PP+ WG
Sbjct: 255 VVAARLAGASEWRIIFKHMLPSLTSHLIASATLSIPGMILGETGLSFLGLGLRPPAISWG 314
Query: 240 LMLSSARVYVTRA--PWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
++L A+ T A PW + PGL ++ VL FNFVGDGLRDA P K
Sbjct: 315 VLLQEAQNIRTVALYPWL-LIPGLFVIITVLCFNFVGDGLRDAADPYK 361
>pir||T45277 oligopeptide transport integral membrane protein bldKA [imported] -
Streptomyces coelicolor >gi|1532201|gb|AAB09554.1|
(U68036) BldKA [Streptomyces coelicolor A3(2)]
Length = 335
Score = 191 bits (480), Expect = 9e-48
Identities = 104/311 (33%), Positives = 171/311 (54%), Gaps = 30/311 (9%)
Query: 4 KVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIA------PYSPVEQH--- 54
K +G L W RFK+++ G+I +++F+ ++A AP I+ PY+ Q
Sbjct: 22 KEPEGRKPGQLMWARFKRDRAGVISAFVVLFFFVIAAAAPLISMVYGKDPYTLYGQDNPD 81
Query: 55 LEDRLKPPCEKY-------WFGTDE-FGRDIFSRIVYGSRIALVVGIIVALISAAIGVTL 106
L D P Y WFG + GRD+F++++YG R ++ + +I +GV +
Sbjct: 82 LLDMFTMPAAPYGGIDGDFWFGIEPGLGRDVFTQLLYGMRNSMATALAATIIMTVLGVLI 141
Query: 107 GLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILG----------PGLINA---MI 153
GL GYFGGK++ + R D A P+ + +A + ++ P + A +I
Sbjct: 142 GLAGGYFGGKIEYWLGRITDFFMALPSQLFFVAAMPVITTVFVAPDKETPTYVRAAAIII 201
Query: 154 AIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYN 213
++ +GW S AR+VR +S+++ FIEAAR G S RIL +LPN+++ LV T
Sbjct: 202 VLSFLGWMSMARIVRGAKMSLRDREFIEAARISGASPWRILRKELLPNIVTPTLVQATLT 261
Query: 214 IPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFV 273
+PS I++ + LSF+G+G P+PDWG M + V + P+Y +FPG+A++ ++ FN +
Sbjct: 262 LPSTILSIAFLSFVGVGYVEPTPDWGRMFAIGADIVEQDPYYMLFPGVAMVIFIVAFNLL 321
Query: 274 GDGLRDAIQPE 284
GD +RDA P+
Sbjct: 322 GDSVRDAFDPK 332
>sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TQ
>gi|1486421|emb|CAA92399.1| (Z68203) OppC homologue
[Rhizobium sp.] >gi|2182647|gb|AAB91870.1| (AE000098)
Y4tQ [Rhizobium sp. NGR234]
Length = 291
Score = 189 bits (476), Expect = 3e-47
Identities = 98/264 (37%), Positives = 163/264 (61%), Gaps = 2/264 (0%)
Query: 20 KKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFS 79
K++ L ++G GI++ +L+A+ AP + P+ RL+ P WFGTD GRD+F+
Sbjct: 24 KRHPLVLLGGGILLLLILLALAAPLYSG-DPLVMDPFKRLQQPSASMWFGTDNLGRDVFA 82
Query: 80 RIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALA 139
R +YG+RI+L+VG++ A+ +A G+ +G+I+GY D IIMR +D + + P +LA+A
Sbjct: 83 RTIYGARISLIVGLLSAVCAAVCGLLIGVIAGY-SRTFDNIIMRVMDGLMSIPTFLLAIA 141
Query: 140 IVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYIL 199
++++ GPG+ ++AIA+ + R+VR+ LSV+ ++EAA G R+L+ +IL
Sbjct: 142 LLSLTGPGIGILIVAIAIPETPAVTRLVRSVVLSVRSRPYVEAALCGGARLPRVLWRHIL 201
Query: 200 PNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFP 259
P+ + ++V SAI+T + LSF+G+G P WG M++++R+++ AP P
Sbjct: 202 PSTIPPLMVQSATVCASAIMTEAGLSFIGVGVPSEIPSWGNMIANSRLFLAIAPLTIFAP 261
Query: 260 GLAIMTLVLGFNFVGDGLRDAIQP 283
GL + VL N +GDGLRD P
Sbjct: 262 GLCLAVTVLAVNLLGDGLRDMFDP 285
>gb|AAB38742.1| (U78885) transport system permease homolog [Listeria monocytogenes]
Length = 335
Score = 189 bits (475), Expect = 4e-47
Identities = 92/301 (30%), Positives = 167/301 (54%), Gaps = 37/301 (12%)
Query: 15 TWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIA----PYSPVEQHLEDRLKPPCEK----- 65
+WLR +KNK ++ L ++ +++AI P+++ P + + + + P +
Sbjct: 35 SWLRIRKNKAALVSLIVLALVIIMAIVGPYLSQNLGPKHDINRQITENASLPPKVQGFEN 94
Query: 66 ----------------------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVAL 97
YW G+D GRD F+RI G+R++L++ ++ AL
Sbjct: 95 MPFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAAL 154
Query: 98 ISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIAL 157
IGV GLISGY GG+VD + R ++++ A P L++ + ++ IL PG+++ +IAIA+
Sbjct: 155 CDLIIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILEPGIVSIIIAIAM 214
Query: 158 VGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSA 217
W + ARVVR + L +K + F+ A+ +GES +IL +++PN+ I++ I ++IPSA
Sbjct: 215 TSWITMARVVRGQVLKLKNQEFVMASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSA 274
Query: 218 IITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGL 277
I + LSF+GLG P+ G++++ + P+ ++P + + +++ FN + DGL
Sbjct: 275 IFFEAFLSFIGLGLPAPAASLGVLVNDGYKTLQVLPYMILYPCIVLCIIMIAFNLIADGL 334
Query: 278 R 278
R
Sbjct: 335 R 335
>pir||JC5121 oligopeptide permease-like protein - Synechococcus sp
>gi|1332418|dbj|BAA12725.1| (D85103) OppC-like protein
[Synechococcus sp.]
Length = 351
Score = 188 bits (473), Expect = 6e-47
Identities = 97/232 (41%), Positives = 150/232 (63%), Gaps = 8/232 (3%)
Query: 62 PCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEII 121
P + + GTD+ GRD FSR++YGSRI+L VG++ +++ +G+ +G I+GY+GG VD +I
Sbjct: 120 PGKLHLLGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALI 179
Query: 122 MRAVDIVWAFPALILALAIVAILGPGLINA-----MIAI-ALVGWASYARVVRAETLSVK 175
MR V+++ P+L L +A+ A+L PGL +A ++AI +L+ WA ARV+R + LS++
Sbjct: 180 MRLVEVLMTIPSLYLLVALAAVLPPGLSSAERFLLIVAITSLINWAGLARVIRGQVLSLR 239
Query: 176 EELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPS 235
E +++A++ +G S L +L +ILP ++ +++ T +PS I+ S LS +GLG Q P
Sbjct: 240 EREYVQASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPSFIVAESVLSLVGLGIQQPD 299
Query: 236 PDWGLMLSSA--RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
P WG MLS A + PW P L I+ VL FN VGDGLRD + P +
Sbjct: 300 PSWGNMLSLATNASMLLLNPWLIWPPALLIVVAVLAFNVVGDGLRDRLDPRR 351
>pir||A75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459332|gb|AAF11131.1|AE002000_7
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 376
Score = 188 bits (473), Expect = 6e-47
Identities = 101/234 (43%), Positives = 147/234 (62%), Gaps = 11/234 (4%)
Query: 62 PCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEII 121
PC+ Y G+D FGRD FSRI+YGS+I+L +GII +L+S +G+ LG I+GYF G D +I
Sbjct: 142 PCKLYLLGSDNFGRDQFSRIMYGSQISLTIGIIASLLSLVLGLVLGGIAGYFRGLADTLI 201
Query: 122 MRAVDIVWAFPALILALAIVAIL----GPGLINAMIA--IALVGWASYARVVRAETLSVK 175
MR V+++ A P L L + + A+ P L+ ++ +A +GW ARVVR + LS +
Sbjct: 202 MRLVEVLSAIPDLFLLILLRAMFPLEANPILVFYIVGGLLAFIGWGGIARVVRGQILSGR 261
Query: 176 EELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPS 235
E +++AA A+G SD RI+ ++LPN + I+V ++ IP I+T S LSF+G+G P
Sbjct: 262 EMDYVQAANALGASDARIIGQHLLPNSATFIIVAMSLAIPGYILTESGLSFIGIGIVEPY 321
Query: 236 PDWGLMLSSAR----VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
WG +L A+ + PW + PG+ IM VLG+ FVGDGLRDA P +
Sbjct: 322 ASWGSLLKLAQDGGFESLDTRPWV-LLPGVFIMLAVLGWQFVGDGLRDAFDPRR 374
>pir||D72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981606|gb|AAD36140.1|AE001766_6 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 367
Score = 188 bits (472), Expect = 8e-47
Identities = 100/226 (44%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+ GTD GRD+ SRI+YG+RI+ +G+I +S +GV +G ISGYFGG VD I R +
Sbjct: 139 FLLGTDSLGRDMLSRIIYGARISTSIGLIGVFLSFILGVAIGGISGYFGGAVDNFIQRTI 198
Query: 126 DIVWAFPALILALAIVAILGPG------LINAMIAIALVGWASYARVVRAETLSVKEELF 179
+I+ + P + L LA+ A L +I ++L GW ARVVR+ LS++EE F
Sbjct: 199 EIIKSIPTIPLWLALSAALPQNWPPLRVYFVIVIILSLTGWTDLARVVRSRFLSLREEDF 258
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+ AA+ +G S+ RI+F ++LP+ MS ++ IT +IP I+ +SLSFLGLG +PP WG
Sbjct: 259 VMAAKFMGASEARIIFRHMLPSFMSHLIASITLSIPGMILGETSLSFLGLGLRPPVISWG 318
Query: 240 LMLSSAR--VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
++L A+ V PW + P + ++T VL FNFVGDGLRDA P
Sbjct: 319 VLLQEAQNLTVVALYPWL-LIPVVFVITTVLCFNFVGDGLRDAADP 363
>pir||C75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460716|gb|AAF12421.1|AE001863_46
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 369
Score = 187 bits (471), Expect = 1e-46
Identities = 98/229 (42%), Positives = 150/229 (64%), Gaps = 9/229 (3%)
Query: 60 KPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDE 119
K P + FGTD+ GRD+FSR + G+++++ VG++ LIS A+G+ LG +SGYFGG VD
Sbjct: 136 KVPRYFFLFGTDQLGRDLFSRTLVGAQVSMTVGVVGVLISFALGILLGGVSGYFGGWVDT 195
Query: 120 IIMRAVDIVWAFPALILALAIVAIL-----GPGLINAMIAI-ALVGWASYARVVRAETLS 173
+I R V+++ +FP L + LA+ ++ + ++A+ AL+GWAS ARVVR + L+
Sbjct: 196 LIQRVVEVLLSFPRLPILLALATLIPARWPSTWVYTGIVAVLALIGWASLARVVRGQVLA 255
Query: 174 VKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQP 233
+ ++ AA+A+G S+LR++ +I PN+ S +LV T +P I+ S+LSFLGLG +
Sbjct: 256 ARNLDYVSAAQAMGASNLRVILRHITPNLSSFLLVTATLALPGYILGESTLSFLGLGIKE 315
Query: 234 PSPDWGLML--SSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDA 280
P WGL+L +S V+ PW ++PGL + VL FNF+GD LRDA
Sbjct: 316 PMTSWGLLLRDASKLEVVSSYPWL-LWPGLFVFISVLAFNFMGDALRDA 363
>pir||S75778 oligopeptide transport system permease protein appC - Synechocystis
sp. (strain PCC 6803) >gi|1001269|dbj|BAA10513.1|
(D64003) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 371
Score = 187 bits (469), Expect = 2e-46
Identities = 102/256 (39%), Positives = 157/256 (60%), Gaps = 12/256 (4%)
Query: 41 FAPF-IAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALIS 99
FAP I P P ++HL L P + GTDE GRD FSR+++G RI+L +G+I IS
Sbjct: 116 FAPVEIFPGIPGDRHLIGTLGPG-KLNLLGTDEQGRDQFSRLLFGGRISLFIGLIGITIS 174
Query: 100 AAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINA------MI 153
+G+ +G I+GYFGG +D ++MR V+++ P + L +A+ A+L PGL +A ++
Sbjct: 175 FPLGMVVGGIAGYFGGWLDVVLMRLVEVLMTIPGIYLLVALAAVLPPGLSSAQRFLLIVV 234
Query: 154 AIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYN 213
+ + W+ ARV+R + LS+K++ +++AA+A+G RI+ +ILP S I++ T
Sbjct: 235 ITSFISWSGLARVIRGQVLSLKQQEYVQAAKAMGAGAPRIIVRHILPQTASYIIISATLA 294
Query: 214 IPSAIITASSLSFLGLGAQPPSPDWGLMLS---SARVYVTRAPWYSIFPGLAIMTLVLGF 270
+P I+ S LS +GLG Q P P WG +LS +A + V + PW P + I+ VL F
Sbjct: 295 VPGFIVAESVLSLIGLGIQQPDPSWGNLLSIATNASILVLQ-PWLVWPPAVLIILTVLAF 353
Query: 271 NFVGDGLRDAIQPEKV 286
N +GDGLRDA+ P +
Sbjct: 354 NLLGDGLRDALDPRSL 369
>pir||D82170 peptide ABC transporter, permease protein VC1682 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656198|gb|AAF94832.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 295
Score = 185 bits (466), Expect = 4e-46
Identities = 102/272 (37%), Positives = 153/272 (55%), Gaps = 7/272 (2%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK------YWFG 69
W F+ N L M GL ++F LV I +P+IAPY P + H L PP + Y+ G
Sbjct: 20 WRSFRANNLAMFGLWSLLFIALVTILSPWIAPYDP-QMHSSVLLLPPSWEPEGTVDYFLG 78
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRDI SR++ GS ++ +++ LI+ +G T+G ++G G + + +D V
Sbjct: 79 TDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNHILDTVM 138
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGES 189
+ P+L+LA+ VA LG G N ++AI L + R V + E+ ++ AAR G +
Sbjct: 139 SIPSLLLAIIFVAFLGAGEFNILLAIGLALIPRFIRSVYVAVHNEVEKDYVMAARLDGAN 198
Query: 190 DLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYV 249
+ +L+ I PN++ I+ IT + AI+ ++L FLGLGAQ PS +WG ML + +
Sbjct: 199 EFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSPSTEWGAMLGDSVELI 258
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
APW PGLAIM V+ N VGDG R A+
Sbjct: 259 YIAPWTVTLPGLAIMFTVVVINLVGDGARQAL 290
>pir||D70431 oligopeptide transport system permease - Aquifex aeolicus
>gi|2983881|gb|AAC07433.1| (AE000743) oligopeptide
transport system permease [Aquifex aeolicus]
Length = 331
Score = 184 bits (463), Expect = 9e-46
Identities = 99/224 (44%), Positives = 138/224 (61%), Gaps = 9/224 (4%)
Query: 62 PCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEII 121
PC Y GTD+ GRD+FSR++YG R +L V +I + IG +G ISGYFGGKVD +I
Sbjct: 98 PCNLYLLGTDKLGRDVFSRLLYGGRYSLGVALIGTFTTFFIGALVGGISGYFGGKVDTLI 157
Query: 122 MRAVDIVWAFPALILALAIVAIL------GPGLINAMIAIALVGWASYARVVRAETLSVK 175
MR V+I+ + PA L L++ ++ G + + ++ +GWA ARVVR LS++
Sbjct: 158 MRLVEILMSIPAFYLLLSLRSVFPLELSSGEVFLIIVFILSFLGWAGLARVVRGMVLSIR 217
Query: 176 EELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPS 235
E+ F+ AA+ G S LRI+F +ILPN ++V T +IP+ I+ +SLS LGLG Q P
Sbjct: 218 EKEFVLAAKTYGASSLRIIFKHILPNTYFYLIVSATMSIPAFILGEASLSLLGLGIQEPV 277
Query: 236 PDWGLMLSSAR--VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGL 277
P WG MLS R +T PW + PG+AI +L FN +GD L
Sbjct: 278 PSWGNMLSEVRNVSVLTFYPWLA-SPGVAIFLTILAFNLLGDAL 320
>emb|CAC05749.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 305
Score = 183 bits (461), Expect = 2e-45
Identities = 95/279 (34%), Positives = 166/279 (59%), Gaps = 1/279 (0%)
Query: 7 KGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKY 66
K S+W W ++N + +I +IIF ++++I+ IA SP++ L + +
Sbjct: 25 KPRSLWTDAWHDLRRNPVFIISALVIIFLIVISIWPSLIASGSPLKCDLAKAQEGSQPGH 84
Query: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
FG + G D+++R VYG+R ++ VGI+ L A +G LG ++G+FGG D ++ R D
Sbjct: 85 PFGFNGQGCDVYTRTVYGARTSVAVGILATLGVALLGSVLGGLAGFFGGGGDAVLSRITD 144
Query: 127 IVWAFPALILALAIVAILGPGLINAMIA-IALVGWASYARVVRAETLSVKEELFIEAARA 185
I +A P ++ L +++++ I +I I L+GW +R+ R ++ K+ +++AARA
Sbjct: 145 IFFAIPVVLGGLVLLSVITSNTIWPVIGFIVLLGWPQISRIARGSVITAKQNDYVQAARA 204
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
+G S+ R+L +I PN ++ ++V+ T + + I ++LSFLG+G +PPS WG+ +SSA
Sbjct: 205 LGASNSRLLLRHIAPNAVAPVIVVATIALGTYISLEATLSFLGVGLKPPSVSWGIDISSA 264
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
YV AP ++P A+ VL F +GD +RDA+ P+
Sbjct: 265 APYVRNAPHALLWPSGALAITVLAFIMLGDAVRDALDPK 303
>sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1282C
>gi|7442464|pir||D70729 probable peptide transport
system permease - Mycobacterium tuberculosis (strain
H37RV) >gi|3261616|emb|CAB01002.1| (Z77164) oppC
[Mycobacterium tuberculosis]
Length = 291
Score = 183 bits (459), Expect = 3e-45
Identities = 95/269 (35%), Positives = 153/269 (56%), Gaps = 4/269 (1%)
Query: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDI 77
RF +N+ + L ++ + A P + PYS + L+PP K+W GT+ G+D+
Sbjct: 14 RFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALGQDL 73
Query: 78 FSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILA 137
++ + G + ++++G+ VA+IS I T+G ISGYFGG D +M VD++ P+ IL
Sbjct: 74 LAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFIL- 132
Query: 138 LAIVAILGPGLINAMIAIALV---GWASYARVVRAETLSVKEELFIEAARAIGESDLRIL 194
+AIV N M + L+ GW +R+VR T+S++E FI AAR +G S RI+
Sbjct: 133 IAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRII 192
Query: 195 FSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPW 254
+++PNV S +++ N+ +AI+ + LSFLG G QPP G +++ T PW
Sbjct: 193 VGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAFPW 252
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+FP ++ +++ N GDGLRDA+ P
Sbjct: 253 VFLFPASILVLILVCANLTGDGLRDALDP 281
>dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]
Length = 295
Score = 182 bits (458), Expect = 3e-45
Identities = 99/271 (36%), Positives = 153/271 (55%), Gaps = 5/271 (1%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK-----YWFGT 70
W ++ N L M GL ++F VL+ IFAP +AP+ Q E + P Y+ GT
Sbjct: 20 WRSYRANGLAMFGLWCLVFIVLITIFAPLLAPFDAQAQSGELLVPPSWAPAGTIDYFLGT 79
Query: 71 DEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWA 130
D+ GRDI SR++ GS++ + + I+A +G +G+++G G + + +D V +
Sbjct: 80 DDLGRDILSRLIMGSQLTFGAAVAITAIAAVVGCLIGVLAGMTKGLLSSTLNHLLDTVMS 139
Query: 131 FPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESD 190
P+L+LA+ VA LG G N ++AI L + R V + E+ +I AAR G +D
Sbjct: 140 IPSLLLAIIFVAFLGFGGFNILLAICLALIPRFIRSVYIAVHTEVEKDYIMAARLDGAND 199
Query: 191 LRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVT 250
+L+S ILPN+++ I IT + +AI+ ++L FLGLGAQ PS +WG +L + +
Sbjct: 200 FYLLWSSILPNILTVIAAEITLALSAAILDITALGFLGLGAQAPSTEWGAILGDSVELIY 259
Query: 251 RAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
APW PGL IM V+ N VG+G+R A+
Sbjct: 260 IAPWTVTLPGLTIMFTVITLNLVGEGVRQAL 290
>pir||D70141 oligopeptide ABC transporter, permease protein (oppC-1) homolog -
Lyme disease spirochete >gi|2688244|gb|AAC66723.1|
(AE001140) oligopeptide ABC transporter, permease
protein (oppC-1) [Borrelia burgdorferi]
Length = 349
Score = 182 bits (457), Expect = 5e-45
Identities = 85/219 (38%), Positives = 134/219 (60%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
Y GTD GRD+ +R++ GS+I+L VG I A +S IG LG I+G+FGG D+II + +
Sbjct: 128 YLLGTDNLGRDLLARLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLPDKIITKTI 187
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARA 185
+I++A P L++ + ++AI+ +I IA+A V W + ARVVR + S+ FI+AA+
Sbjct: 188 EILYALPYLLIVIILMAIMERSIIGLFIALAFVSWLTVARVVRGQVQSLSSSEFIQAAKT 247
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
+G ++ RI+ +++PN + I++ T +PS I+ + LSFLGLG P WG ++ +
Sbjct: 248 LGATNQRIILKHLIPNSIGMIVIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNG 307
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
PW P + + +L NF+GDGLRDA P+
Sbjct: 308 IATFVEYPWKVFIPAIVMTIFLLFMNFLGDGLRDAFDPK 346
>gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]
Length = 338
Score = 181 bits (455), Expect = 8e-45
Identities = 95/279 (34%), Positives = 161/279 (57%), Gaps = 11/279 (3%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLED---RLKPPCEKYWFGTDEF 73
++F+ N+L M+G + + VL+ + F ++ + D + PP + FGTD++
Sbjct: 25 IKFRNNRLAMMGFYMFVTIVLLVVVTHFYTKFTGYDFAKTDPTIKNNPPSWIHPFGTDKY 84
Query: 74 GRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPA 133
GRD F R++ G I+L VG + ++ IG+T+G ++G+FGG+VD IIMR ++I+ +FP
Sbjct: 85 GRDTFMRVLEGGWISLQVGFLSTFMAVTIGLTMGSVAGFFGGRVDNIIMRLIEILSSFPF 144
Query: 134 LILALAIVAILGP-----GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGE 188
L +A + AI L +I + L+ W AR++R + L+++E+ FI A RA+G
Sbjct: 145 LAIAYTLSAIFRERPPEFRLYVIVIILGLLSWTGLARLIRGQILALREQEFIVATRALGI 204
Query: 189 SDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVY 248
+F +++PNV+++++V T S+I++ + LSFL L P P WG +LS A
Sbjct: 205 KRRNQIFRHLVPNVLATVVVSATLTFASSILSEAFLSFLNLSVTEPIPTWGALLSKASEN 264
Query: 249 VTRAP---WYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
T W IFPG + ++ N +G+GLRD+I P+
Sbjct: 265 STSLRTFWWIWIFPGAMLFFFIMSINLIGEGLRDSIDPK 303
>gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borrelia burgdorferi]
Length = 349
Score = 181 bits (454), Expect = 1e-44
Identities = 85/219 (38%), Positives = 133/219 (59%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
Y GTD GRD+ R++ GS+I+L VG I A +S IG LG I+G+FGG D+II + +
Sbjct: 128 YLLGTDNLGRDLLVRLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLPDKIITKTI 187
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARA 185
+I++A P L++ + ++AI+ +I IA+A V W + ARVVR + S+ FI+AA+
Sbjct: 188 EILYALPYLLIVIILMAIMERSIIGLFIALAFVSWLTVARVVRGQVQSLSSSEFIQAAKT 247
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
+G ++ RI+ +++PN + I++ T +PS I+ + LSFLGLG P WG ++ +
Sbjct: 248 LGATNQRIILKHLIPNSIGMIVIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNG 307
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
PW P + + +L NF+GDGLRDA P+
Sbjct: 308 IATFVEYPWKVFIPAIVMTIFLLFMNFLGDGLRDAFDPK 346
>pir||T03434 probable transport protein accE - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153181|gb|AAC17201.1| (AF010180) AccE
[Agrobacterium tumefaciens]
Length = 286
Score = 180 bits (451), Expect = 2e-44
Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 5/258 (1%)
Query: 27 IGLGIIIFWVLVAIF----APFIAPYSPVEQHLEDRLKPP-CEKYWFGTDEFGRDIFSRI 81
I + + + W+ V +F A ++AP+ ++Q R PP + GTD GRD+ S I
Sbjct: 22 ISIWLCLIWIAVVVFVDITAQWLAPFDYLQQSPLARFAPPGAPGHLLGTDYLGRDVLSNI 81
Query: 82 VYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIV 141
+ ++ +L++ ++ +LI A IG TLG ++ +FGG VD +IM D + P +I AL ++
Sbjct: 82 LVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFADAKASVPFIIFALGVL 141
Query: 142 AILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPN 201
A LG + ++ + + + YAR+ R LS +E + EAAR +G LRI ++LPN
Sbjct: 142 AFLGSSPLILLMRVGVASFERYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPN 201
Query: 202 VMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGL 261
+ ++V IT N P I+ S LSFLGLG QPP GLM++ R Y+ A W PG+
Sbjct: 202 IAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGV 261
Query: 262 AIMTLVLGFNFVGDGLRD 279
I+ L + +GD LRD
Sbjct: 262 VIVLTTLSISLLGDYLRD 279
>gi|10954944 Probable accE [Agrobacterium tumefaciens]
>gi|6498297|dbj|BAA87749.1| (AB016260) Probable accE
[Agrobacterium tumefaciens]
Length = 286
Score = 180 bits (451), Expect = 2e-44
Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 5/258 (1%)
Query: 27 IGLGIIIFWVLVAIF----APFIAPYSPVEQHLEDRLKPP-CEKYWFGTDEFGRDIFSRI 81
I + + + W+ V +F A ++AP+ ++Q R PP + GTD GRD+ S I
Sbjct: 22 ISIWLCLIWIAVVVFVGITAQWLAPFDYLQQSPLARFAPPGAPGHLLGTDYLGRDVLSNI 81
Query: 82 VYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIV 141
+ ++ +L++ ++ +LI A IG TLG ++ +FGG VD +IM D + P +I AL ++
Sbjct: 82 LVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFADAKASVPFIIFALGVL 141
Query: 142 AILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPN 201
A LG + ++ + + + YAR+ R LS +E + EAAR +G LRI ++LPN
Sbjct: 142 AFLGSSPLILLMLVGVASFERYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPN 201
Query: 202 VMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGL 261
+ ++V IT N P I+ S LSFLGLG QPP GLM++ R Y+ A W PG+
Sbjct: 202 IAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGV 261
Query: 262 AIMTLVLGFNFVGDGLRD 279
I+ L + +GD LRD
Sbjct: 262 VIVLTTLSISLLGDYLRD 279
>pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001402|dbj|BAA10024.1| (D63999) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 294
Score = 175 bits (439), Expect = 6e-43
Identities = 99/266 (37%), Positives = 151/266 (56%), Gaps = 13/266 (4%)
Query: 24 LGMIGLGIIIFWVLVAIFAPFIAPYSPVEQ-HLEDRLKPPCEKYWFGTDEFGRDIFSRIV 82
L + L +I VL +F P P++Q PP ++ GT++ G+D +R++
Sbjct: 25 LASLSLITLIIIVLSVVFGPIFYRV-PIDQIDFSQTAVPPSWQHPLGTNDLGQDQLARLL 83
Query: 83 YGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVA 142
G RI+L VG+ +S +G +G I+GYFGG D I+MR D+ A P L L L +V
Sbjct: 84 IGGRISLAVGLSAMAVSLTLGTLIGAIAGYFGGWWDVILMRITDLFLALPQLPLVLLVVY 143
Query: 143 ILGPGLINA-----------MIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191
+ + A ++ I L+ W S AR+VR L ++E F++AA A+G
Sbjct: 144 LFREPVTRATSPEKGIFILVVLLIGLLNWMSVARLVRGNILRLREMEFVKAAIAMGAGSN 203
Query: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTR 251
I++ ++LPNV++ I+V + + +AIIT S+LSFLGLG P P WG ML +A+ Y+
Sbjct: 204 HIIWRHLLPNVLNLIIVAASLAVGNAIITESTLSFLGLGFPPDVPTWGQMLYTAKDYLET 263
Query: 252 APWYSIFPGLAIMTLVLGFNFVGDGL 277
AP ++FPGLAI VL N++GDG+
Sbjct: 264 APLMAVFPGLAIFITVLSVNYLGDGI 289
>pir||T35981 probable peptide transport permease - Streptomyces coelicolor
>gi|4464266|emb|CAB37469.1| (AL035559) putative peptide
transport permease [Streptomyces coelicolor A3(2)]
Length = 317
Score = 174 bits (437), Expect = 1e-42
Identities = 93/273 (34%), Positives = 154/273 (56%), Gaps = 6/273 (2%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFI--APYSPVEQHLEDRLKPPCEKYWFGTDEF 73
W ++K++ G+ GL ++ +VLVA+ AP + V L+ P ++ GTD+F
Sbjct: 40 WKEYRKHRAGVFGLATLVLFVLVALTAPLTVGSDVDSVTDAPGQPLESPSGRFPLGTDQF 99
Query: 74 GRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPA 133
GR + +++GSR++L+VG++ A++S IG +G+ +G+F G ++MR D P
Sbjct: 100 GRSLLGLLIWGSRVSLLVGLLAAVLSVLIGALIGITAGHFRGWYATVMMRITDWFLVMPT 159
Query: 134 LILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRI 193
L+LA+ + +L L ++AI + W + AR+VRA+TL+V+ +IE A+A+G I
Sbjct: 160 LVLAIVLATVLSRSLGTIVLAIGVTTWPTTARLVRAQTLAVESRPYIERAKALGGGHWHI 219
Query: 194 LFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAP 253
+ ++LPNVM IL T I SAI+ ++L+FLGLG P WG +L AR + +
Sbjct: 220 MSRHVLPNVMPLILAQTTLIISSAILAEATLAFLGLG-DPAVVSWGGLLQDAREAGSVSS 278
Query: 254 ---WYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
WY + PG+ I + L F G + + P
Sbjct: 279 GDWWYLVPPGIGIAVVALAFTLCGRAVEAVLNP 311
>gb|AAC69844.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 276
Score = 173 bits (434), Expect = 2e-42
Identities = 90/267 (33%), Positives = 149/267 (55%), Gaps = 2/267 (0%)
Query: 19 FKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIF 78
F KN L IF V+V F F++ + + +L +P + GTD++GRD+F
Sbjct: 5 FSKNNLIFFVFVAFIFVVIVLQF--FVSSENATKVNLSQTFEPISWLHLLGTDDYGRDLF 62
Query: 79 SRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILAL 138
+RI+ G+R L V ++ + IGVTLGL +GY G ++ +++R +D+ + P I+ +
Sbjct: 63 TRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFIIMI 122
Query: 139 AIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYI 198
A+ + P L N +I+I L+ W +Y R+ R+ S + +I+ A+ IL ++
Sbjct: 123 ALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIRHL 182
Query: 199 LPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIF 258
P ++ +I+VL+ + I+ SSLSF+GLGAQPP+P+WG ML R +++ P I
Sbjct: 183 TPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIMLIA 242
Query: 259 PGLAIMTLVLGFNFVGDGLRDAIQPEK 285
P I +L FN GD LRD + ++
Sbjct: 243 PASVIAITILIFNLTGDALRDRLLKQR 269
>emb|CAC11409.1| (AL445063) probable dipeptide transport system permease protein
dppC [Thermoplasma acidophilum]
Length = 265
Score = 172 bits (431), Expect = 5e-42
Identities = 92/248 (37%), Positives = 141/248 (56%), Gaps = 2/248 (0%)
Query: 36 VLVAIFAPFIA--PYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGI 93
V I P IA P+ P + +L L PP Y GT+ G DI SR++Y + I
Sbjct: 12 VFFGISGPAIALLPHDPFKYNLVVGLHPPDRTYLLGTNANGEDILSRMLYAMPRDAYISI 71
Query: 94 IVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMI 153
IV L +G G+I+GY GG +DE+IMR D + PALIL +A+ + L ++
Sbjct: 72 IVVLSGVLLGGLFGIIAGYRGGYLDEVIMRITDAFLSLPALILVIALSVLFHETLGGVIL 131
Query: 154 AIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYN 213
A+ +V W YAR RA+TL +K F++AA+ S ++ FSY+ N + ++ +
Sbjct: 132 ALVIVWWPIYARFFRAQTLRIKNLDFVQAAKLGNVSFAKLFFSYLFINSIDPVVAYAALD 191
Query: 214 IPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFV 273
+ I+T S+L+FLG+G +PP P+ G M S+ + WY++FPGLAI+ +V+GF V
Sbjct: 192 FGNVILTYSTLAFLGIGLEPPIPELGSMASNGVGTLPTGWWYAVFPGLAILIIVIGFVLV 251
Query: 274 GDGLRDAI 281
GD ++D +
Sbjct: 252 GDRMQDIV 259
>gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-3) [Sulfolobus
solfataricus]
Length = 298
Score = 171 bits (430), Expect = 7e-42
Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 13/278 (4%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIA-------------PYSPVEQHLEDRLKPPC 63
+R K LG+I + + + W L+ ++ P++P + +L+ PP
Sbjct: 15 IRDKAGLLGLIIVSLFLIWSLIQGILEILSSYLRKQYLGYILLPHNPFQYNLQLAFHPPS 74
Query: 64 EKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMR 123
+ GT+ G DI SRI+Y V I+V + IG LG+++GY GG VDEI+MR
Sbjct: 75 STFLLGTNAEGEDILSRILYALPRDAFVAIVVVFSAIIIGGILGILAGYLGGIVDEILMR 134
Query: 124 AVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAA 183
D + PALIL +AI L ++ +A+V W +YAR RA+TL +K +I AA
Sbjct: 135 VTDAFLSLPALILVIAITVPLKATFFATILGLAVVWWPTYARFYRAQTLRIKNMDYISAA 194
Query: 184 RAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLS 243
+ S + + + YI N + +L + + I+T S+L+FLG+G PP P+ G M +
Sbjct: 195 KLSNVSRISLFYRYIFLNAIDPVLAYAALDFGNVILTYSTLAFLGIGITPPIPELGEMAA 254
Query: 244 SARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
+ + + W+++FPGL I+ +V+GF +GD L+D +
Sbjct: 255 NGVTGLPQYWWWALFPGLTILIIVVGFVLLGDRLQDVV 292
>pir||T44599 oligopeptide transport system permease protein [imported] -
Rhizobium meliloti megaplasmid 2 (fragment)
>gi|4929437|gb|AAD33993.1|AF148072_1 (AF148072)
oligopeptide transport system permease protein
[Sinorhizobium meliloti]
Length = 289
Score = 170 bits (426), Expect = 2e-41
Identities = 84/228 (36%), Positives = 144/228 (62%), Gaps = 9/228 (3%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+ GTD GRD+ SRI+YG+RI+L +G++ +S +G+ +G ++GY GG D ++ R +
Sbjct: 63 FLLGTDRLGRDVLSRIIYGARISLTIGLLGITVSFVLGIVIGGLAGYHGGIFDLVVQRLI 122
Query: 126 DIVWAFPALILALAIVAIL----GPGLI--NAMIAIALVGWASYARVVRAETLSVKEELF 179
+++ + P++ L L++ AI+ P LI + + L+ W AR VR++ L+++EE +
Sbjct: 123 EVLQSIPSIPLWLSLAAIMPATWSPLLIYLGITVILGLLDWTGLARAVRSKLLALREEDY 182
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+ AA+ +G RI+ +++P MS ++ T +IP I+ ++LSFLGLG +PP WG
Sbjct: 183 VLAAQLMGARSGRIIGRHLVPGFMSHLIATATISIPGMILGETALSFLGLGLRPPITSWG 242
Query: 240 LMLSSARVYVTRA--PWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
++L+ A+ A PW +FP + ++ ++L FNF+GDGLRDA P K
Sbjct: 243 ILLTEAKSVSVIAFYPWL-LFPTIPVILVILAFNFLGDGLRDAADPYK 289
>gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]
Length = 308
Score = 169 bits (425), Expect = 3e-41
Identities = 97/278 (34%), Positives = 155/278 (54%), Gaps = 6/278 (2%)
Query: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTD 71
W +F K ++ L I+I VL A + YS D PP ++ FGTD
Sbjct: 30 WRAIARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSYAVS-TSDLSAPPSWEHPFGTD 88
Query: 72 EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAF 131
G D+ + ++ G++ +L + VA+++ IG G ++GY GG D ++MR VD++ F
Sbjct: 89 HLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYVGGWADSLLMRIVDLIMIF 148
Query: 132 PALILALAIVAILGPGLINAMIAIALV----GWASYARVVRAETLSVKEELFIEAARAIG 187
P L +A A +A G + + +ALV W ARVVR+ LS++ F+ AA+ G
Sbjct: 149 PLLAVA-AFLARQSQGGEHGWLLVALVLATLSWTVLARVVRSVVLSLRTREFVIAAKIAG 207
Query: 188 ESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARV 247
+RI+F ++LPN + I+V T + SAI++ ++LS+LG G QPP GL+++ A+
Sbjct: 208 AGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGFGVQPPDTSLGLLINQAQG 267
Query: 248 YVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
++ PW FPGL I+ + L F+GDGLR A+ P++
Sbjct: 268 AISTRPWLFYFPGLFIILIALCVAFIGDGLRAALDPKQ 305
>dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 302
Score = 166 bits (416), Expect = 3e-40
Identities = 93/282 (32%), Positives = 159/282 (55%), Gaps = 10/282 (3%)
Query: 6 KKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRL----KP 61
+K S + W ++K + LG +IF L+ F I+ + + ++ L +P
Sbjct: 16 EKSPSGLSILWRELVRDK---VALGSLIFLGLIMAFVYGISLFLDQNEIVKVDLFAIHQP 72
Query: 62 PCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEII 121
P +W GTD GRD+F +++ G+R ++ +G++V L+S IG+ +GLISGY+GG +D I
Sbjct: 73 PSSDFWLGTDYGGRDVFGQLIIGTRNSITIGLLVTLMSGTIGILIGLISGYYGGTIDNIF 132
Query: 122 MRAVDIVWAFPALILALAIVAILGP-GLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
MRAVD P L++ + VA++ +++ + + L W AR++R++ L +E ++
Sbjct: 133 MRAVDFFMILPNLMIIIVFVALVPKYSIVSFSLIMTLFLWMGIARMIRSKALRERELDYV 192
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
+A++ +G SDL+I+F+ +LPN+ S I+V +T N+ + I S LSFLG G +P G
Sbjct: 193 QASKTLGSSDLKIMFTQVLPNLSSLIIVTMTLNLAANIGIESGLSFLGFGFPESTPSLGT 252
Query: 241 MLSSA-RVYVTRAPWYSIFP-GLAIMTLVLGFNFVGDGLRDA 280
++S A W+ P + I L+L N VG L+ A
Sbjct: 253 LISYATNPQTLEHRWWIWLPAAILIFVLMLSINNVGQALKRA 294
>pir||F72107 peptide ABC transporter, permease protein CP0567 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376471|gb|AAD18353.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189479|gb|AAF38386.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39]
Length = 284
Score = 166 bits (415), Expect = 4e-40
Identities = 83/264 (31%), Positives = 151/264 (56%), Gaps = 3/264 (1%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQ-HLEDRLKPPCEKYWFGTDEFG 74
W +NK+ ++GL +I +L A+ P+ Y EQ L+D L PC ++ FGTD G
Sbjct: 13 WKSIIQNKMLVLGLTTLIILMLGALLLPWF--YQDYEQTSLKDILVSPCSRFPFGTDTLG 70
Query: 75 RDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPAL 134
R +F+R + G R++L++ I LI +G+ ++ G K+D ++MR +I+++ P +
Sbjct: 71 RCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTEILFSLPRI 130
Query: 135 ILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRIL 194
+ + ++ I GL+ ++A+ + GW +R++ + L +K + F+ +A+A+ S IL
Sbjct: 131 PIIILLLVIFHHGLLPLILAMTITGWIPISRIIYGQFLLLKNKPFVLSAKAMHASTFHIL 190
Query: 195 FSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPW 254
++LPN ++ I+ + + IP+AI T + +SFLGLG QPP G ++ + PW
Sbjct: 191 KKHLLPNTLAPIISTLIFTIPNAIYTEAFISFLGLGIQPPQASLGTLVKEGINAIDYYPW 250
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLR 278
FP L ++ L + FN +G+G +
Sbjct: 251 LFFFPSLIMIALSISFNLIGEGAK 274
>dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 284
Score = 166 bits (415), Expect = 4e-40
Identities = 83/264 (31%), Positives = 151/264 (56%), Gaps = 3/264 (1%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQ-HLEDRLKPPCEKYWFGTDEFG 74
W +NK+ ++GL +I +L A+ P+ Y EQ L+D L PC ++ FGTD G
Sbjct: 13 WKSIIQNKMLVLGLTTLIILMLGALLLPWF--YQDYEQTSLKDILVSPCSRFPFGTDTLG 70
Query: 75 RDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPAL 134
R +F+R + G R++L++ I LI +G+ ++ G K+D ++MR +I+++ P +
Sbjct: 71 RCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTEILFSLPRI 130
Query: 135 ILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRIL 194
+ + ++ I GL+ ++A+ + GW +R++ + L +K + F+ +A+A+ S IL
Sbjct: 131 PIIILLLVIFHHGLLALILAMTITGWIPISRIIYGQFLLLKNKPFVLSAKAMHASTFHIL 190
Query: 195 FSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPW 254
++LPN ++ I+ + + IP+AI T + +SFLGLG QPP G ++ + PW
Sbjct: 191 KKHLLPNTLAPIISTLIFTIPNAIYTEAFISFLGLGIQPPQASLGTLVKEGINAIDYYPW 250
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLR 278
FP L ++ L + FN +G+G +
Sbjct: 251 LFFFPSLIMIALSISFNLIGEGAK 274
>sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|628819|pir||S39587 peptide transport system permease
sapC - Salmonella typhimurium >gi|414210|emb|CAA52286.1|
(X74212) sapC [Salmonella typhimurium]
Length = 296
Score = 164 bits (410), Expect = 1e-39
Identities = 101/275 (36%), Positives = 152/275 (54%), Gaps = 12/275 (4%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKYWFG 69
W +F + M+GL L+ IF +IAPY +Q L +L PP ++ G
Sbjct: 20 WRKFYSDAPAMVGLYGCAGLALLCIFGGWIAPYGIDQQFLGYQLLPPSWSRYGEVSFFLG 79
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRD+ SR++ G+ + IV L + G+ LG+++G G ++ +D +
Sbjct: 80 TDDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVLNHILDTLL 139
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEEL---FIEAARAI 186
+ P+L+LA+ +VA GP L +AM A+ L A R+VR+ V +EL ++ AAR
Sbjct: 140 SIPSLLLAIIVVAFAGPHLSHAMFAVWL---ALLPRMVRSVYSMVHDELEKEYVIAARLD 196
Query: 187 GESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR 246
G + L IL+ ILPN+ + ++ IT + AI+ ++L FL LGAQ PSP+WG ML A
Sbjct: 197 GATTLNILWFAILPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDAL 256
Query: 247 VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
+ APW + PG AI VL N +GDG+R AI
Sbjct: 257 ELIYVAPWTVMLPGAAITLSVLLVNLLGDGIRRAI 291
>gi|10954709 hypothetical ABC-transporter gene~similar to dppC gene
[Agrobacterium rhizogenes] >gi|8918709|dbj|BAA97774.1|
(AB039932) hypothetical ABC-transporter gene~similar to
dppC gene [Agrobacterium rhizogenes]
>gi|10567373|dbj|BAB16182.1| (AP002086) hypothetical
ABC-transporter gene~similar to dppC gene [Agrobacterium
rhizogenes]
Length = 305
Score = 163 bits (409), Expect = 2e-39
Identities = 85/264 (32%), Positives = 144/264 (54%), Gaps = 9/264 (3%)
Query: 23 KLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEK------YWFGTDEFGRD 76
++G+IG G+++ +AI PFI+ P++ + PP Y GTD+ GRD
Sbjct: 36 RIGLIGFGLLLG---LAILLPFISSVDPLKMAYSHKFIPPFPSEGWQWPYVLGTDQLGRD 92
Query: 77 IFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALIL 136
+ R + G +L +G+ ++ +G +LGL++G+ GG +D +IMR D + P +IL
Sbjct: 93 VLMRCLVGLCYSLFIGVTTVILMFIVGCSLGLLAGFRGGWLDTVIMRLTDAQLSIPMIIL 152
Query: 137 ALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFS 196
A+ I+ + P + ++ + L GW YARV R+ L + ++ R +G SDLRI+
Sbjct: 153 AITILGVSRPTVPAIILVLGLSGWPLYARVARSVALGERNRGYVLGERVLGASDLRIMLL 212
Query: 197 YILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYS 256
++ P V+ I + +I +I S L FLGLG QPP+P +G +++ +R Y+ A W +
Sbjct: 213 FVAPVVLPPIAFVAVLDIARMMIFESILGFLGLGVQPPTPTFGNVIADSRKYLLNAWWIA 272
Query: 257 IFPGLAIMTLVLGFNFVGDGLRDA 280
PGL ++ + N +G L A
Sbjct: 273 TMPGLFMLISLTCLNLMGSALERA 296
>sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|7442408|pir||G64877 peptide transport system
permease protein sapC - Escherichia coli
>gi|1279402|emb|CAA65939.1| (X97282) SapC protein
[Escherichia coli] >gi|1742105|dbj|BAA14845.1| (D90766)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742114|dbj|BAA14853.1| (D90767)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742123|dbj|BAA14862.1| (D90768)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1787549|gb|AAC74374.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 296
Score = 162 bits (407), Expect = 3e-39
Identities = 99/275 (36%), Positives = 150/275 (54%), Gaps = 12/275 (4%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKYWFG 69
W +F + M+GL ++ IF + APY +Q L +L PP ++ G
Sbjct: 20 WRKFYSDASAMVGLYGCAGLAVLCIFGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLG 79
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRD+ SR++ G+ + +V L + G+ LG +G G ++ +D +
Sbjct: 80 TDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLL 139
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEEL---FIEAARAI 186
A P+L+LA+ +VA GP L +AM A+ L A R+VR+ V +EL ++ AAR
Sbjct: 140 AIPSLLLAIIVVAFAGPSLSHAMFAVWL---ALLPRMVRSIYSMVHDELEKEYVIAARLD 196
Query: 187 GESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR 246
G S L IL+ ++PN+ + ++ IT + AI+ ++L FL LGAQ PSP+WG ML A
Sbjct: 197 GASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDAL 256
Query: 247 VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
+ APW + PG AIM VL N +GDG+R AI
Sbjct: 257 ELIYVAPWTVMLPGAAIMISVLLVNLLGDGVRRAI 291
>gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae]
Length = 296
Score = 162 bits (406), Expect = 4e-39
Identities = 99/275 (36%), Positives = 150/275 (54%), Gaps = 12/275 (4%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPC------EKYWFG 69
W +F + M+GL ++ IF + APY +Q L +L PP ++ G
Sbjct: 20 WHKFYSDASAMVGLYGCAGLAVLCIFGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLG 79
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRD+ SR++ G+ + +V L + G+ LG +G G ++ +D +
Sbjct: 80 TDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLL 139
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEEL---FIEAARAI 186
A P+L+LA+ +VA GP L +AM A+ L A R+VR+ V +EL ++ AAR
Sbjct: 140 AIPSLLLAIIVVAFAGPSLSHAMFAVWL---ALLPRMVRSIYSMVHDELEKEYVIAARLD 196
Query: 187 GESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR 246
G S L IL+ ++PN+ + ++ IT + AI+ ++L FL LGAQ PSP+WG ML A
Sbjct: 197 GASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDAL 256
Query: 247 VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
+ APW + PG AIM VL N +GDG+R AI
Sbjct: 257 ELIYVAPWTVMLPGAAIMISVLLVNLLGDGVRRAI 291
>emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 322
Score = 161 bits (403), Expect = 1e-38
Identities = 93/256 (36%), Positives = 144/256 (55%), Gaps = 12/256 (4%)
Query: 28 GLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKP---PCEKYWFGTDEFGRDIFSRIVYG 84
G+ + ++ +A+F +APY+P DR P P ++ GT++ G DI S +VYG
Sbjct: 58 GIFLFALFLFMALFPSLLAPYAPY-----DRFTPYEEPSGQHLLGTNDIGNDILSELVYG 112
Query: 85 SRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAIL 144
++++L VG AL+S IG LGL SGYF G VDE++M DIV P + L + + A L
Sbjct: 113 AKVSLTVGFAAALVSTLIGTILGLCSGYFRGAVDELLMGFTDIVLIIPKIPLIIVLGAYL 172
Query: 145 GPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMS 204
P + + + L+ W S ARV R++TL ++E ++++AR +G S I+FS ILPN+
Sbjct: 173 QPSIWILVPVLGLLSWESTARVTRSKTLQLRETGYVKSARCMGFSSQHIMFSDILPNLYH 232
Query: 205 SILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLS---SARVYVTRAPWYSIFPGL 261
+L SA+I+ +SLSFLGL + WG MLS S ++ W+ + PG+
Sbjct: 233 VLLPKFMLATASAMISEASLSFLGL-SDVSMKSWGTMLSFAFSRGGFIRDMWWWYLPPGI 291
Query: 262 AIMTLVLGFNFVGDGL 277
I V+ +G G+
Sbjct: 292 CITLCVISIALIGFGI 307
>pir||G75529 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458041|gb|AAF09944.1|AE001896_9
(AE001896) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 339
Score = 161 bits (402), Expect = 1e-38
Identities = 96/314 (30%), Positives = 166/314 (52%), Gaps = 50/314 (15%)
Query: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLED--------------RLK--- 60
+ ++N L + G I++ + L+A+ AP IA P L D LK
Sbjct: 27 KLRRNPLAVTGFVIVLLFGLMALLAPLIA--KPTGNCLRDLGMETQGQIYQPGFALKAIF 84
Query: 61 ---PPCEKYW--------------------FGTDEFGRDIFSRIVYGSRIALVVGIIVAL 97
P C K FGT G +IF +++G+R AL + I+
Sbjct: 85 ASPPECYKMERVSFAQEPAPASSVTGTFAPFGTVN-GYNIFYGLIWGTRTALKMSFIIVG 143
Query: 98 ISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAIL------GPGLINA 151
I+ +IG+ +G ISG++GG VD +I +++++A P L+L + I+ IL G
Sbjct: 144 ITLSIGILIGAISGFYGGWVDGLIQGIINVIYALPPLVLTVTILTILRAKNPGGDPTGPI 203
Query: 152 MIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLIT 211
+ A+ + GWA+YARV+R + L ++ +++AARA+G D+R++ +++PN ++++ L
Sbjct: 204 IFAMCITGWATYARVIRGDILKTRQLEYVDAARALGARDMRMILRHVVPNSLTTVFTLAV 263
Query: 212 YNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSI-FPGLAIMTLVLGF 270
+ + ++ ++LSFLGLG + +WG ++ AR ++ WY + FP + I+ L F
Sbjct: 264 LALATVPLSVAALSFLGLGFESGYSEWGQLIDFARAWLKPDYWYVLAFPAIFIVLFSLAF 323
Query: 271 NFVGDGLRDAIQPE 284
N GDGLRDA+ P+
Sbjct: 324 NLFGDGLRDALDPK 337
>pir||C72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981774|gb|AAD36296.1|AE001778_17 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 282
Score = 159 bits (397), Expect = 5e-38
Identities = 86/270 (31%), Positives = 146/270 (53%), Gaps = 5/270 (1%)
Query: 19 FKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIF 78
F KNK + + + +++A+ P+++PY + +PP +++W GT+ FG+DIF
Sbjct: 10 FLKNKKVIFAICVYAGLIILALVGPYLSPYKDPLAFVGPGYQPPSKEHWLGTNTFGQDIF 69
Query: 79 SRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILAL 138
+++VYG R +L VG++ ++ IG+ +G ++GY GG DE++M +I+ P L L +
Sbjct: 70 TQLVYGLRSSLFVGVLGGTLATVIGLLIGFVAGYKGGWFDELLMMFTNILMVIPTLALLI 129
Query: 139 AIVAILG-PGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSY 197
I A L G+ I I L W AR VRA+TLS+K F++ AR ++I+F
Sbjct: 130 IIAAYLPYRGVFIESIIIGLTAWPWTARAVRAQTLSLKTREFVDLARITARKPMKIIFGE 189
Query: 198 ILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVY---VTRAPW 254
I+PN+MS + ++ AI+ A+ L F+GLG G+M+ A ++ W
Sbjct: 190 IMPNMMSYVFMVFILQFGGAILAATGLDFIGLG-PTRGISLGIMMQQATLWNAIQLGMWW 248
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
++I PG I +V + GL + P+
Sbjct: 249 WAITPGAVITLMVATLYVMNAGLDEVFNPK 278
>emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi]
Length = 296
Score = 158 bits (396), Expect = 6e-38
Identities = 88/281 (31%), Positives = 160/281 (56%), Gaps = 12/281 (4%)
Query: 10 SMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCE----- 64
S W W F+++++ MIG + + + +F +APY+ +Q L +L PP
Sbjct: 14 SRWRDAWNVFRQDRMAMIGFYGFLLLLGLCLFGNTLAPYALDQQFLGYQLLPPSWSRYGK 73
Query: 65 -KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMR 123
+++ GTD+ GRD+ SR++ G+ ++V L + +G+ +G+++G G ++
Sbjct: 74 CRFFLGTDDLGRDLLSRLLSGAAPTFGPALLVTLAATLVGILIGMLAGVTHGLRSAVLNH 133
Query: 124 AVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEEL---FI 180
+D + + P+L+LA+ ++A +GP L +AM+A+ + A R+VR +V +EL ++
Sbjct: 134 ILDPLLSIPSLLLAMVVIAFIGPQLTHAMLAVWM---ALLPRMVRTIYSAVHDELEKEYV 190
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
AAR G S +L+ ++PN++ ++ +T AI+ ++L FL LGAQ P+ +WG+
Sbjct: 191 TAARLDGASTRYLLWYAVVPNILPVLVSEVTRAFSIAILDIAALGFLNLGAQLPTTEWGV 250
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
+L ++ V APW + PG AI VL N +GDG+R A+
Sbjct: 251 LLGNSLELVYAAPWTVMLPGTAITLSVLIVNLLGDGIRRAL 291
>gb|AAG20459.1| (AE005118) oligopeptide transport permease protein; AppC
[Halobacterium sp. NRC-1]
Length = 386
Score = 155 bits (388), Expect = 6e-37
Identities = 88/288 (30%), Positives = 147/288 (50%), Gaps = 21/288 (7%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCE----------- 64
W RFKKN++ ++ LG + +V + P + P ++ PP
Sbjct: 94 WRRFKKNQVAVVALGWLAVMFVVGVLGPLLI--DPPTTQFTNQSVPPVGMSTTVGGVVKT 151
Query: 65 ---KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFG----GKV 117
+Y GT G+ I + +VYG R+++ VG+I + S IG +G ++ + G++
Sbjct: 152 GTWQYPLGTSAKGQGILTLVVYGMRVSMEVGLIATIFSVIIGSAVGAVAAFATSVGRGRI 211
Query: 118 DEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEE 177
DE++MR VD+ FP +L L + + G L ++ W AR VR E L E
Sbjct: 212 DELLMRYVDVQSVFPDFMLLLLLTYLFGSELWMIILLFGFFSWEGIARTVRGEALQRASE 271
Query: 178 LFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPD 237
+I AA A G + L I+ +++PN +SI++ T IP I+ +SL+FLG + P +
Sbjct: 272 EYITAAEASGANMLYIVRQHLIPNSANSIIISATVGIPGFILGEASLAFLGF-SDPTTYS 330
Query: 238 WGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
WG +++ +V + A W + PG+ + VL F +VG+ LRDA+ P +
Sbjct: 331 WGRTIATGQVNLASAWWIATIPGVFLFLTVLSFYYVGESLRDAMDPRQ 378
>gb|AAC18098.1| (AF058302) membrane component of putative ABC transporter
[Streptomyces roseofulvus]
Length = 274
Score = 153 bits (384), Expect = 2e-36
Identities = 83/254 (32%), Positives = 134/254 (52%), Gaps = 3/254 (1%)
Query: 24 LGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVY 83
L ++ L +++ W A+ P+ RL P + G D GRD+++R+V+
Sbjct: 17 LSLLVLLLVLGW---ALLPGLFTAADPLRADAAHRLLAPGAGHPLGADHVGRDLYARVVH 73
Query: 84 GSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAI 143
G+ +L + G LG ++G G VD ++MR VD++ A P L+L+LA+V+
Sbjct: 74 GTARSLGTAFAAVALGVLAGGALGAVAGVAGRAVDAVVMRVVDVLLAVPGLLLSLAVVSA 133
Query: 144 LGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVM 203
LG G A+ + ARV RA+ V+ ++EAAR G + IL +I+PN
Sbjct: 134 LGFGTAQVACAVGVGTVGGIARVSRAQVRRVRGGEYVEAARLAGVAGPLILLRHIVPNAA 193
Query: 204 SSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAI 263
+L L +A++ +SL FLG GA PP+P+WG ++S+ R Y+ A W + PGL +
Sbjct: 194 PPVLALAVTECGTAVLGVASLGFLGFGAPPPAPEWGALISTGRDYLVSAWWLTTLPGLVL 253
Query: 264 MTLVLGFNFVGDGL 277
+ LV+ + VG L
Sbjct: 254 VALVVALHRVGRAL 267
>pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain Orsay)
>gi|5458957|emb|CAB50444.1| (AJ248287) ABC TRANSPORTER
[Pyrococcus abyssi]
Length = 309
Score = 153 bits (382), Expect = 3e-36
Identities = 95/298 (31%), Positives = 157/298 (51%), Gaps = 34/298 (11%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLE-----------DRLKPPCEK 65
L F+ NK G+G+I F+VL AI P P++ + E + PP +
Sbjct: 10 LAFRNNKF-KFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTR 68
Query: 66 ---------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLIS 110
+ GTD+ G+D+++ +VYG R +L + ++ A+I +G+T+GL+S
Sbjct: 69 ENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVS 128
Query: 111 GYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL--INAMIAIALVGWASYARVVR 168
GY GG VDE++M V+I+ P+++L + + A L + A+I I L W AR VR
Sbjct: 129 GYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALI-IGLTNWPWVARSVR 187
Query: 169 AETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLG 228
A+TLS+K F+ ++ +G SDLRI+F I+PN++S I + + AI+ +++L F+G
Sbjct: 188 AQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIG 247
Query: 229 LGAQPPSPDWGLMLSSARVYVTRA---PWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
LG G++L A ++ W+ I PGL I ++ FV G+ + P
Sbjct: 248 LG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNP 304
>sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJE
>gi|7442468|pir||B64987 hypothetical 38.1 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|405908|gb|AAA16378.1| (U00008) yejE [Escherichia
coli] >gi|1736844|dbj|BAA15987.1| (D90849) DciAC protein
[Escherichia coli] >gi|1788505|gb|AAC75240.1| (AE000307)
putative transport system permease protein [Escherichia
coli K12]
Length = 341
Score = 152 bits (381), Expect = 4e-36
Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 1/225 (0%)
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
PP + W GTD G D+ +RI+YG+RI+++ G+++ L S+ +GV G + GY+GGKVD
Sbjct: 116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLW 175
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
R +++ P L L + + +++ P + L GW S VVRAE L + +I
Sbjct: 176 GQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYI 235
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
AA+A+G SD I+ ++LPN M + L + + + S+I T +SL FLG G SP G
Sbjct: 236 RAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGE 295
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
+L + + +APW I L++ L+ F+G+ +RDA P K
Sbjct: 296 LLLQGKNNL-QAPWLGITAFLSVAILLSLLIFIGEAVRDAFDPNK 339
>pir||A70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960088|emb|CAA17986.1|
(AL022121) dppC [Mycobacterium tuberculosis]
Length = 266
Score = 152 bits (380), Expect = 5e-36
Identities = 80/259 (30%), Positives = 135/259 (51%), Gaps = 1/259 (0%)
Query: 26 MIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGS 85
MI +I+ ++VA F P + P +WFGTD G DI+SR VYG+
Sbjct: 1 MIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
Query: 86 RIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILG 145
R ++ VG+ L +G LG ++G++G +D ++ R D+ P L+ A+ ++ ++
Sbjct: 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
Query: 146 PGLINAMIAI-ALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMS 204
+ +IAI AL GW AR+ R L V+ ++ AA+A+G + +IL + LPN +
Sbjct: 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
Query: 205 SILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIM 264
++ + T + I+T ++LS+LG+G WG ++ A+ + +P A+
Sbjct: 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
Query: 265 TLVLGFNFVGDGLRDAIQP 283
VL F +GD LRDA+ P
Sbjct: 241 ITVLAFMMMGDALRDALDP 259
>pir||B75142 oligopeptide transport integral membrane protein. PAB2363 -
Pyrococcus abyssi (strain Orsay)
>gi|5458362|emb|CAB49851.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT INTEGRAL MEMBRANE PROTEIN. [Pyrococcus abyssi]
Length = 306
Score = 151 bits (378), Expect = 8e-36
Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 33/293 (11%)
Query: 21 KNKLGMIGLGIIIFWVLVAIFAPFIAP-----YSPVEQHLEDRLKPPCEK---------- 65
KNK +G I+I L+A+F P I P Y P++ KP
Sbjct: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
Query: 66 ---------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGK 116
++ GTD FGRDI++++ YG R + ++GI ++ +G+ +G I+GY GG
Sbjct: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
Query: 117 VDEIIMRAVDIVWAFPALILALAIVAIL---GPGLINAMIAIALVGWASYARVVRAETLS 173
+DE++M +I+ P + L + I A L G G+ + I L W AR VRA+TLS
Sbjct: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGI--ESVIIGLTAWPWTARAVRAQTLS 189
Query: 174 VKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQP 233
+K FI A+ G D++I+F I+PN++S + ++ +I+ A L F+GLG
Sbjct: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PT 248
Query: 234 PSPDWGLMLSSARVY--VTRAP-WYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
G+ML A ++ VT W++I PGL I L+ G F+ GL + P
Sbjct: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
>pir||T35940 probable transport permease protein - Streptomyces coelicolor
>gi|4158199|emb|CAA22762.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 312
Score = 150 bits (374), Expect = 2e-35
Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 1/253 (0%)
Query: 36 VLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIV 95
VL + P + L +L+ P + FGTD+ GRD+ R VYG R++L+VG+
Sbjct: 56 VLAVLLVPPLVQLDQQAVDLAAKLQAPGWAHPFGTDDVGRDLLLRCVYGLRVSLLVGMAA 115
Query: 96 ALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAI 155
AL + +G +G +G GG VD +MR VD + + P L+L + IVA+ PG+ + ++
Sbjct: 116 ALTATVVGTAVGATAGALGGWVDRGVMRVVDALSSVPHLLLGIFIVAMFRPGVWPVVASV 175
Query: 156 ALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIP 215
AL W S AR+VRAE LS++ I+AA + G S R+ ++LP V+ + +P
Sbjct: 176 ALTHWLSTARIVRAEVLSLRARPHIDAAVSGGASRWRVTVRHLLPGVLPQAALAAVLMVP 235
Query: 216 SAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY-SIFPGLAIMTLVLGFNFVG 274
A+ S+LSFLGLG + G ++ AR + W+ ++FPGL I+ L +
Sbjct: 236 HAMWHESALSFLGLGLPTHTASLGNLIQEARGSLLAGQWWPTLFPGLFIIVPTLAVAGLA 295
Query: 275 DGLRDAIQPEKVS 287
R+ I P + S
Sbjct: 296 GAWRERINPRRRS 308
>sp|P45287|SAPC_HAEIN PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|1074013|pir||C64134 sapC protein homolog -
Haemophilus influenzae (strain Rd KW20)
>gi|1574488|gb|AAC23287.1| (U32837) peptide ABC
transporter, permease protein (sapC) [Haemophilus
influenzae Rd]
Length = 295
Score = 149 bits (373), Expect = 3e-35
Identities = 85/272 (31%), Positives = 138/272 (50%), Gaps = 6/272 (2%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCE------KYWFG 69
WLRF++N + + ++I + A+FA ++APY+ Q + L PP ++FG
Sbjct: 19 WLRFRQNTIALFSFYLLIALIFTALFASYLAPYADNRQFIGQELMPPSWVDRGKIAFFFG 78
Query: 70 TDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVW 129
TD+ GRDI SR++ G+R L ++V A IG LG+I+G G + D
Sbjct: 79 TDDLGRDILSRLIMGTRYTLGSALLVVFSVAIIGGALGIIAGLLKGIKARFVGHIFDAFL 138
Query: 130 AFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGES 189
+ P L++A+ I ++ P L NAM A L + + E+ ++ + G S
Sbjct: 139 SLPILLIAVVISTLMEPSLWNAMFATLLAILPYFIHTIYRAIQKELEKDYVVMLKLEGIS 198
Query: 190 DLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYV 249
+ +L S ILPN+ + + A++ S+LSF+ LGAQ P+P+WG M+ + +
Sbjct: 199 NQALLKSTILPNITVIYIQEVARAFVIAVLDISALSFISLGAQRPTPEWGAMIKDSLELL 258
Query: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAI 281
APW + PG AI+ +L +GL AI
Sbjct: 259 YLAPWTVLLPGFAIIFTILLSIIFSNGLTKAI 290
>pir||D71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328606|gb|AAC67792.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 281
Score = 149 bits (373), Expect = 3e-35
Identities = 76/270 (28%), Positives = 145/270 (53%), Gaps = 1/270 (0%)
Query: 15 TWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFG 74
TW + NK+ ++G + VL A F P++ P E L+ P + + FGTD G
Sbjct: 9 TWRYIRTNKMLVLGCLTLAVLVLAATFLPYLYP-DYERTFPEHALQSPSKAFPFGTDNLG 67
Query: 75 RDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPAL 134
R + +R + G R++L++ + +I +G+ ++ G KV +I+ R +I+++ P +
Sbjct: 68 RCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALASGKKVADIMSRITEILFSIPRI 127
Query: 135 ILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRIL 194
+ + ++ I G++ ++A+ + GW AR++ + L ++ + F+ +ARA+ S IL
Sbjct: 128 PVIILLLVIFNHGILPLILAMTITGWIPIARIIYGQFLLLENKEFVLSARALQASTFHIL 187
Query: 195 FSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPW 254
++LPN + I+ + + IP+A+ T + +SFLGLG QPP G ++ + PW
Sbjct: 188 RKHLLPNSLGPIISTLIFTIPNAVYTEAFISFLGLGIQPPYASLGTLVKEGIHSLAYHPW 247
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
P ++ + + FN +G+GLR + E
Sbjct: 248 LFFIPSFFMIIVSVSFNCIGEGLRTKLLEE 277
>pir||A83389 probable permease of ABC transporter PA2060 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948068|gb|AAG05448.1|AE004632_7 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 338
Score = 149 bits (372), Expect = 4e-35
Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 1/223 (0%)
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
PP + W GTD+ GRD+ +R++YG R++++ + + L S+ +G+ G + GY+GG +D
Sbjct: 115 PPSAENWLGTDDQGRDVLARVIYGLRLSILFALGLTLASSLLGICAGAVQGYYGGWIDLF 174
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
R +++ P L L + + +++ PG+ + + L W S VVRAE L + ++
Sbjct: 175 GQRFIEVWSGLPMLYLLIILASLVQPGVGWLLAIMLLFSWTSLVDVVRAEFLRGRHLEYV 234
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
+AAR +G D ++F +ILPN M + L + + + A+ T ++L FLG G P SP G
Sbjct: 235 KAARTLGLGDAGVMFRHILPNAMVATLTFLPFLLCGAVTTLTALDFLGFGLPPGSPSLGE 294
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
++ R + +APW + + + TL+ F+G+ +RDA P
Sbjct: 295 LVGQGRDNL-QAPWLGLTVFVVLATLLSLLVFIGEAVRDAFDP 336
>pir||E83419 probable permease of ABC transporter PA1808 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947792|gb|AAG05197.1|AE004607_3 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 339
Score = 148 bits (370), Expect = 7e-35
Identities = 81/252 (32%), Positives = 136/252 (53%), Gaps = 5/252 (1%)
Query: 35 WVLVAIFAPFIAPYSPVEQHLE-DRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGI 93
WVL + P Y + L+ PP + W GTD+ RD+ +R++YG R++++ +
Sbjct: 92 WVL---WPPIPYSYDTINYELKVPAPAPPSAENWLGTDDQARDVLARVIYGFRVSILFAL 148
Query: 94 IVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMI 153
+ ++S+ IGVT+G + GY+GG VD + R +++ P L L + + + + P +
Sbjct: 149 TLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEVWSGLPVLYLLIILASFVQPNFWWLLG 208
Query: 154 AIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYN 213
+ L W S VVRAE L + ++ AARA+G + I+F +ILPN M S L + +
Sbjct: 209 IMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNSAIMFRHILPNAMISTLTFMPFI 268
Query: 214 IPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFV 273
+ AI T +SL FLG G P +P G +++ + + +APW I + + ++ F+
Sbjct: 269 LTGAIGTLTSLDFLGFGLPPGAPSLGELVAQGKSNL-QAPWLGISAFVVLAVMLSLLVFI 327
Query: 274 GDGLRDAIQPEK 285
G+ RDA P K
Sbjct: 328 GEAARDAFDPRK 339
>pir||D82442 probable peptide ABC transporter, permease protein VCA0589
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658000|gb|AAF96491.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 352
Score = 147 bits (367), Expect = 2e-34
Identities = 74/217 (34%), Positives = 125/217 (57%), Gaps = 1/217 (0%)
Query: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
W GTD+ GRD+ +RI+YG RI+++ G I+ +IS+ IGV +G GY+GG +D R ++
Sbjct: 130 WLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIE 189
Query: 127 IVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAI 186
+ P L L + + + + P + + L W S VVRAE L + ++ AA+A+
Sbjct: 190 VWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAM 249
Query: 187 GESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR 246
G SD+RI+ ++LPN M + L ++ + + ++ T +SL FLG G SP G +L+ +
Sbjct: 250 GVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGK 309
Query: 247 VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+ +APW I + + ++ F+G+ +RDA P
Sbjct: 310 ANL-QAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
>pir||H71211 probable oligopeptide transport system permease protein appC -
Pyrococcus horikoshii >gi|3258404|dbj|BAA31087.1|
(AP000007) 474aa long hypothetical oligopeptide
transport system permease protein appC [Pyrococcus
horikoshii]
Length = 474
Score = 146 bits (365), Expect = 3e-34
Identities = 78/222 (35%), Positives = 128/222 (57%), Gaps = 6/222 (2%)
Query: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
+ GTD+ GRD+F+ +V+GSR++L VGI A++S IG+ G+ + YFGG DE++MR +
Sbjct: 249 YLGTDDKGRDLFAGLVWGSRVSLAVGISTAVLSVLIGIFYGVAAAYFGGWTDELMMRFQE 308
Query: 127 IVWAFPALILALAIVAILGP--GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
+ + P L + + + G L ++ +A+ GW ARV R+ +KE+ ++EAA
Sbjct: 309 FMASIPTLPILILLGTYFGGHIQLWQIVLLLAVFGWVGIARVARSMAYQIKEQTYVEAAI 368
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
A+G RI+F +++P ++ + ++P A++ +SLSFLGLG P WG +L
Sbjct: 369 ALGAGTGRIIFKHMVPQLLPYAFAQMALSVPGAVLAEASLSFLGLG-DPTQVTWGQILHD 427
Query: 245 ARV---YVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
A+V V W+ I PG+AI + L F +G L + P
Sbjct: 428 AQVAGAAVNGYWWWVIPPGIAIALVALTFVLIGTALDRVLNP 469
>pir||H72536 probable oligopeptide transport system permease protein APE1581 -
Aeropyrum pernix (strain K1) >gi|5105268|dbj|BAA80581.1|
(AP000062) 527aa long hypothetical oligopeptide
transport system permease protein [Aeropyrum pernix]
Length = 527
Score = 146 bits (364), Expect = 4e-34
Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 4/219 (1%)
Query: 69 GTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIV 128
GTD+ GRD+F ++YG+R AL+VG++ + I+ G G++SGY GG DE+++R I+
Sbjct: 307 GTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRFAQII 366
Query: 129 WAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGE 188
++ PAL L + AI+G + + I W A V R+ +K E ++EAA A G
Sbjct: 367 YSLPALPLLILFAAIIGGNIWVIIFLIVAFSWPGIAFVTRSMAFQIKSEPYVEAAIASGA 426
Query: 189 SDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR-- 246
+RI+ Y+ P V+ + + ++P A+I +SLSFL LG P WG +L A+
Sbjct: 427 GTVRIVLLYLAPQVLPYMFASMALSVPGAVIAEASLSFLNLG-DPDLVTWGKILFEAQDA 485
Query: 247 -VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
+ W+ I PGLAI + + F F+G+ L + P+
Sbjct: 486 GAALNGYWWWVIPPGLAIAVVGMTFVFIGNALDAILNPK 524
>pir||G81699 peptide ABC transporter, permease protein TC0473 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190514|gb|AAF39321.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 287
Score = 145 bits (363), Expect = 5e-34
Identities = 74/271 (27%), Positives = 147/271 (53%), Gaps = 3/271 (1%)
Query: 15 TWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLED-RLKPPCEKYWFGTDEF 73
TW + NK+ ++G ++ +L AIF P + Y E+ + L+ P + + FGTD
Sbjct: 15 TWNYIRTNKMLLLGCTVLTVLILSAIFLPSL--YPDYEKTFPNYALQAPNKLFPFGTDNL 72
Query: 74 GRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPA 133
GR + +R + G R++L++ + +I +G+ ++ G K+ + + R +I+++ P
Sbjct: 73 GRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALAGGKKIADFMSRITEILFSLPR 132
Query: 134 LILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRI 193
+ + + ++ I G++ ++A+ + GW AR++ + L ++ + F+ +ARA+ S I
Sbjct: 133 IPVIILLLVIFNHGILPLILAMTITGWIPIARIIYDQFLLLENKEFVLSARALQASTFHI 192
Query: 194 LFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAP 253
L ++LPN + I+ + + IP+A+ T + +SFLGLG QPP G ++ + P
Sbjct: 193 LRKHLLPNTLGPIISTLIFTIPNAVYTEAFISFLGLGIQPPYASLGTLVKEGIHSLDYHP 252
Query: 254 WYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
W P ++ + + FN +G+GLR + E
Sbjct: 253 WLFFIPSFFMVIISVSFNCIGEGLRTKLLEE 283
>pir||H75026 oligopeptide abc transporter, permease protein (appc) PAB1195 -
Pyrococcus abyssi (strain Orsay)
>gi|5459168|emb|CAB50654.1| (AJ248288) oligopeptide ABC
transporter, permease protein (appC) [Pyrococcus abyssi]
Length = 477
Score = 144 bits (360), Expect = 1e-33
Identities = 78/222 (35%), Positives = 129/222 (57%), Gaps = 6/222 (2%)
Query: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
+ GTD+ GRD+++ +V+G+RI+L++GI VA++S GV G+ S Y GG DE++MR +
Sbjct: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
Query: 127 IVWAFPALILALAIVAILGPGLINAMIAIALV--GWASYARVVRAETLSVKEELFIEAAR 184
+ + P L + + + + + +I + LV GW ARV R+ L +KE+ ++EAA
Sbjct: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLML-- 242
A+G RI+F +I+P ++ I ++P A++T + LS+LGLG P + WG +L
Sbjct: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
Query: 243 -SSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+A + W+ I PGLAI + L F +G L + P
Sbjct: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNP 472
>pir||F71957 ABC transporter, permease - Helicobacter pylori (strain J99)
>gi|4154752|gb|AAD05812.1| (AE001461) ABC transporter,
permease [Helicobacter pylori J99]
Length = 338
Score = 143 bits (357), Expect = 2e-33
Identities = 78/220 (35%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
PP K+ GTD+ RD+ +R+VYG R++LV GI++ L S IGV+LG GY+GG VD +
Sbjct: 113 PPSFKHLLGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSLGAFQGYYGGLVDLV 172
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
R +I A P L L + I + + + L W ++VVR E L + +
Sbjct: 173 GQRLSEIWSAIPMLFLLIVISSAFNSNFWIILFLVLLFSWMGLSQVVRTEFLKARNMDYT 232
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
+AARA+G +DL+I+F ++LPN + + + I + + ++I T SL FLG G S G
Sbjct: 233 KAARALGVNDLKIIFYHVLPNALVATITYIPFLMAASISTLVSLDFLGFGMPIGSASLGE 292
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDA 280
+++ + +T P ++ +AI L+ F+G+G+RDA
Sbjct: 293 LVNQGKDNLT-TPHLAVVAFVAISLLLSVLVFIGEGVRDA 331
>pir||F82301 peptide ABC transporter, permease protein VC0618 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655051|gb|AAF93784.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 341
Score = 143 bits (356), Expect = 3e-33
Identities = 87/302 (28%), Positives = 152/302 (49%), Gaps = 34/302 (11%)
Query: 16 WLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSP------------------------- 50
W + N++ MIG+ I+ + L+A+ AP + + P
Sbjct: 5 WKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGW 64
Query: 51 -VEQHLEDRLKPPCEK---YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTL 106
E DR K + GT GRD++S++ YG+R++L VG + + +
Sbjct: 65 IAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVI 124
Query: 107 GLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGP-GLINAMIAIALVGWASYAR 165
G+ +GYFGGK+D+ + A++I+ P L + A +G G + + I WA AR
Sbjct: 125 GVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGAR 184
Query: 166 VVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLS 225
VVR++T++++E+ F++AA +GES RI+F ILPN++S + ++ AI+ +++S
Sbjct: 185 VVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATIS 244
Query: 226 FLGLGAQPPSPDWGLMLSSARV---YVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQ 282
FLGLG P + WG+ML + + + A W + P L++ LV G + + +
Sbjct: 245 FLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIAN 303
Query: 283 PE 284
P+
Sbjct: 304 PQ 305
>pir||C64551 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2313343|gb|AAD07318.1|
(AE000544) oligopeptide ABC transporter, permease
protein (oppC) [Helicobacter pylori 26695]
Length = 338
Score = 143 bits (356), Expect = 3e-33
Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
PP K+ GTD+ RD+ +R+VYG R++L+ GI++ L S IGV+LG GY+GG VD +
Sbjct: 113 PPSFKHLLGTDDQARDVLARLVYGYRVSLIFGILLTLFSVLIGVSLGAFQGYYGGLVDLV 172
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFI 180
R +I A P L L + I + + + L W ++VVR E L + +
Sbjct: 173 GQRLSEIWSAIPMLFLLIVISSAFNSNFWIILFLVLLFSWMGLSQVVRTEFLKARNMDYT 232
Query: 181 EAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL 240
+AARA+G +DL+I+F ++LPN + + + + + + ++I T SL FLG G S G
Sbjct: 233 KAARALGVNDLKIIFYHVLPNALVATITYVPFLMAASISTLVSLDFLGFGMPIGSASLGE 292
Query: 241 MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDA 280
+++ + +T P +I +AI L+ F+G+G+RDA
Sbjct: 293 LVNQGKDNLT-TPHLAIVAFVAISLLLSVLVFIGEGVRDA 331
>pir||C71163 probable oligopeptide transport system permease protein AppC -
Pyrococcus horikoshii >gi|3256909|dbj|BAA29592.1|
(AP000002) 304aa long hypothetical oligopeptide
transport system permease protein AppC [Pyrococcus
horikoshii]
Length = 304
Score = 139 bits (348), Expect = 3e-32
Identities = 90/297 (30%), Positives = 150/297 (50%), Gaps = 33/297 (11%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLED-----------RLKPPCEK 65
L F+ NK G G++I +++ + P P++ + E + PP +
Sbjct: 6 LAFRNNKF-KFGFGMLIAFIIFGLIGPLFTPFASDGLYYEQVGKIKIASYSAKTLPPMTR 64
Query: 66 --------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISG 111
+ GTD+ G+D+++ +VYG R +L V + A+I G+T+G +SG
Sbjct: 65 ENITTYTGKKVEVLHILGTDKEGKDLYTELVYGLRTSLWVAFLAAIIGTITGITIGFVSG 124
Query: 112 YFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL--INAMIAIALVGWASYARVVRA 169
Y GG VDE++M V+I+ P+++L + + A L I A+I I L W AR VRA
Sbjct: 125 YKGGLVDELLMMFVNIMLVIPSIVLLILVAAYLEARSPEIQALI-IGLTNWPWVARSVRA 183
Query: 170 ETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGL 229
+TLS+K F+ ++ +G DLRI+ ILPN++S I + + AI+ +++L F+GL
Sbjct: 184 QTLSLKNREFVHMSKIMGVGDLRIIVEDILPNMISYIFMTGILQVSGAILASATLDFIGL 243
Query: 230 GAQPPSPDWGLMLSSARVYVTRA---PWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
G G++L A ++ W+ I PGL I ++ F+ GL + P
Sbjct: 244 G-PTTMVSLGVILQKAIMHNALQFGWWWWFIPPGLFITLIITSLFFINLGLEEVFNP 299
>pir||B82876 oligopeptide transport system permease protein UU561 [imported] -
Ureaplasma urealyticum
>gi|6899567|gb|AAF30974.1|AE002154_10 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 332
Score = 137 bits (341), Expect = 2e-31
Identities = 81/269 (30%), Positives = 149/269 (55%), Gaps = 5/269 (1%)
Query: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDR-LKPPCEKYWFGTDEFGRD 76
R+ ++ G+IGL III ++AI PF SP E R L + + FGTD GRD
Sbjct: 68 RYGRSFSGLIGLAIIIILFILAIIIPFTTG-SPTELRPNKRYLDYFTDGFIFGTDNNGRD 126
Query: 77 IFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALIL 136
+++ + +G R +L + IIV I +GVTLG++ GYF D+I+ + I+ P +I+
Sbjct: 127 LWAMLWWGLRYSLGIAIIVTAIELVVGVTLGILMGYF-EMFDKIMTFIIKILTNVPTIII 185
Query: 137 ALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFS 196
+ + IL P + AI+ GW + A +R++ + L++ A++ +G +I+ +
Sbjct: 186 LMILTIILKPSFGVMIFAISFSGWIAMANQMRSQVKRARSFLWVAASKTLGTKAWKIILN 245
Query: 197 YILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYS 256
+ LP ++ ++ + ++IP AI+ SSL+F+GL + P +P G +++ +T P ++
Sbjct: 246 F-LPILIPMMITQLVFSIPGAILAESSLAFIGL-SLPNTPTLGNLIADGSSIITLYPRFT 303
Query: 257 IFPGLAIMTLVLGFNFVGDGLRDAIQPEK 285
+ P ++ LV VG +DA++ ++
Sbjct: 304 LIPSFLLVCLVASIQLVGGATQDALRRQR 332
>gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; DppC2 [Halobacterium
sp. NRC-1]
Length = 526
Score = 136 bits (339), Expect = 3e-31
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 13/229 (5%)
Query: 68 FGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDI 127
FGT GRD+F+ ++ G+ L+V I ++ I L L+S Y+GG VD ++ D
Sbjct: 283 FGTLPNGRDLFTYMMGGAETTLMVTGIAIGMAGFIAALLALVSSYYGGTVDLSVLTLADG 342
Query: 128 VWAFPALILALAI---------VAILGPGLINAMIAIALVGWASYARVVRAETLSVKEEL 178
+ + P L+L + + ++ GL+ A++ L W R +R L V EE
Sbjct: 343 IVSIPQLLLLIMVSVVFQDHWLKSVFNGGLLLALV-FGLTTWPVLWRSLRGPALQVAEEE 401
Query: 179 FIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFL--GLGAQPPSP 236
+++AA++ G+ + ++LP V+ +L+ + + +I +SLSFL GLG PP+P
Sbjct: 402 WVDAAKSFGQQPTVTMRKHMLPYVLGYLLIYASMTVGGIVIAMASLSFLGNGLGITPPTP 461
Query: 237 DWGLMLSSARVYVTRAPWY-SIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284
WG +S + YV+ A W+ ++ PGL I+ LV G N +GDG+RDAI PE
Sbjct: 462 AWGRAISQGQPYVSSASWHIALIPGLIIVVLVTGANALGDGIRDAIDPE 510
>gb|AAC67219.1| (U78968) transmembrane transport protein DppC [Streptococcus
pyogenes]
Length = 274
Score = 136 bits (338), Expect = 4e-31
Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 2/262 (0%)
Query: 24 LGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVY 83
L +G+ I + ++A+ F H L P ++FGTD GRD+F R +
Sbjct: 10 LWQLGIAISLILSILALNLYFYRTPLETNAHSLSNLGPSLN-HFFGTDGLGRDMFVRTIK 68
Query: 84 GSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAI 143
G +L VG++ AL+ G+++G +D+II VD+ P LI + I +
Sbjct: 69 GLYFSLQVGLLGALMGVFFATVFGVLAGLGNSLIDKIIAWLVDLFIGMPHLIFMILIFFV 128
Query: 144 LGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVM 203
+G G +IA A+ W ARV+R E +K + F++ ++++G++ I+ +ILP +
Sbjct: 129 VGKGAQGVIIATAVTHWPFLARVIRNEVYDLKNKAFVQLSKSMGKTPYYIVRHHILPLIA 188
Query: 204 SSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY-SIFPGLA 262
S I + P I+ +S++FLG G P G++LS A +++ W+ +FPGL
Sbjct: 189 SQIFIGFILLFPHVILHEASMTFLGFGLSAEQPSVGIILSEAAKHISLGNWWLVVFPGLY 248
Query: 263 IMTLVLGFNFVGDGLRDAIQPE 284
++ +V F+ +G+ L+ P+
Sbjct: 249 LILVVNAFDTIGESLKKLFYPQ 270
>sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075748|pir||D53290 oligopeptide transport protein
oppC - Lactococcus lactis subsp. lactis
>gi|149389|gb|AAA25166.1| (M76471) 'Sequence is part of
a 1.65-kb fragment of the lactose plasmid from
Lactococcus lactis subsp cremoris SK11 that facilitates
integration when plasmid is in L.lactis subsp. lactis.';
ORF >gi|308853|gb|AAA16166.1| (L18760) transmembrane
protein [Lactococcus lactis] >gi|495180|gb|AAB00536.1|
(U09553) transmembrane protein [Lactococcus lactis]
Length = 294
Score = 134 bits (334), Expect = 1e-30
Identities = 84/281 (29%), Positives = 147/281 (51%), Gaps = 5/281 (1%)
Query: 3 RKVKKGESMWHLTWLRFKKNKLGMIG-LGIIIFWVLVAIFAPFIAPYSPVEQHLEDR-LK 60
+K K S+ H KK+KL MI + ++ +++V I++ F+ + V+ ++ D+ L
Sbjct: 4 KKHKNSLSLVHSIKEELKKDKLAMISTIFLVAVFLIVYIYSMFLKQSNYVDVNIMDQYLA 63
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
P + GTD GRDI ++ +R + + V LI+ +G LG+I+GYFGG+ D I
Sbjct: 64 PLTNGHLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVVGNILGVITGYFGGRFDLI 123
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIA-IALVGWASYARVVRAETLSVKEELF 179
MR D V P++++ + V I+ ++I I++ W R++RA T++ +
Sbjct: 124 FMRFTDFVMILPSMMIIIVFVTIIPRFNSWSLIGIISIFSWIGTTRLIRARTMTEVNRDY 183
Query: 180 IEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWG 239
+ A++ G SD +I+F I PN+ + ++ T I + LSFLG G +P G
Sbjct: 184 VRASKTSGTSDFKIMFREIWPNLSTLVIAEATLVFAGNIGLETGLSFLGFGLPAGTPSLG 243
Query: 240 LMLSSAR--VYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLR 278
M++ A +T PW + + I+ +VL F+G+ LR
Sbjct: 244 TMINEATNPETMTDKPWTWVPATVVILIVVLAIIFIGNALR 284
>pir||B72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981748|gb|AAD36272.1|AE001776_8 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 291
Score = 134 bits (334), Expect = 1e-30
Identities = 79/262 (30%), Positives = 135/262 (51%), Gaps = 12/262 (4%)
Query: 31 IIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALV 90
I + ++LV +++PY PV + R PP ++ FGT+ G+D+F R+ + R +L+
Sbjct: 22 IALLFLLVLSLLSYVSPYDPVSIYQVPRGLPPSFEHPFGTNWLGQDVFWRLTFAVRNSLL 81
Query: 91 VGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAIL---GPG 147
+ +I A S I + +G++SGY GG +D+++M D P LI+ + I IL
Sbjct: 82 IAVITAFFSRIIAIIVGIVSGYKGGALDQVLMTIGDTTMVLPILIVLIVISMILKDWARS 141
Query: 148 LINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSIL 207
+N + +A WA ARV+R++ LSV+E F+ A G S ++I+ +LP+V+ I
Sbjct: 142 FVNLGLLLAFFSWAWDARVIRSQVLSVRERDFVRVAVLSGMSTMKIVGKQLLPHVLPVIF 201
Query: 208 VLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAP------WYSIFPGL 261
N+ AI +L++LGLG P P G ML A +TR W+ P +
Sbjct: 202 TTFINNMSWAIGMEITLAYLGLGIDPTVPTLGTMLQRA---ITRQALFLGLWWWLAAPIV 258
Query: 262 AIMTLVLGFNFVGDGLRDAIQP 283
+ L + ++ + + + P
Sbjct: 259 TAILLFIALYWLSVSISEYLDP 280
>emb|CAA68075.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 424
Score = 132 bits (328), Expect = 6e-30
Identities = 72/216 (33%), Positives = 118/216 (54%), Gaps = 1/216 (0%)
Query: 69 GTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGK-VDEIIMRAVDI 127
GT G DI++ Y + A+ + +IV ++ A IG+++G G++ GK +D IIMR ++I
Sbjct: 200 GTSSIGYDIWTTAWYATWRAIKIALIVVILEAIIGISIGAFLGFYAGKLIDTIIMRVIEI 259
Query: 128 VWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIG 187
A P LI L V+I+G + ++ + +VGW + + R ++VK+E FI AA+AIG
Sbjct: 260 FLAPPTLIWILLFVSIIGANEWSLVLTLTIVGWPGFVGITRMFIITVKDEEFIIAAKAIG 319
Query: 188 ESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARV 247
R +F + LP ++ I I ++P I+ +SL+FLG + + G ML A
Sbjct: 320 VGTPRRIFVHALPTIIGKIANNIVRSVPGVILWIASLAFLGFFKEKKDTNLGQMLIEASQ 379
Query: 248 YVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
V W P + ++ L L NF+ G+ DA+ P
Sbjct: 380 EVGSNIWIIALPTIILLFLSLSLNFIALGVHDALDP 415
>gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 292
Score = 131 bits (327), Expect = 8e-30
Identities = 78/259 (30%), Positives = 135/259 (52%), Gaps = 7/259 (2%)
Query: 31 IIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALV 90
+++ + +++ + F +PY P+ + R PP ++ GT+ G+D+F R+ + R +L+
Sbjct: 23 VLVLLIFLSVLSHF-SPYDPIRIYQVPRGLPPSLEHPLGTNWLGQDVFWRLTFAVRNSLM 81
Query: 91 VGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAIL---GPG 147
+ ++ AL S AI V +G++SGY GG VD ++M D P LI+ + I IL
Sbjct: 82 IAVVTALFSRAIAVFVGILSGYKGGAVDRVLMTVGDTTMVLPFLIVLIVISMILRDWTKS 141
Query: 148 LINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSIL 207
N + +A WA ARV+R++ LS++E F A G S LRI++ +LP+V+ I
Sbjct: 142 FFNLGLLLAFFSWAWDARVIRSQVLSLRERDFTFVAILSGMSTLRIVYKQLLPHVLPIIF 201
Query: 208 VLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA---RVYVTRAPWYSIFPGLAIM 264
N+ AI +L++LGLG P P G ML A + W+ + P +A +
Sbjct: 202 TTFINNMAWAIGMEITLAYLGLGIDPTVPTIGTMLQRAIYRQALFLGLWWWLVAPIVAAI 261
Query: 265 TLVLGFNFVGDGLRDAIQP 283
L + ++ + + + P
Sbjct: 262 LLFVALYWLSTSVSEYLDP 280
>gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 290
Score = 129 bits (322), Expect = 3e-29
Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 10/271 (3%)
Query: 22 NKLGMIGLGIIIFWVLVAIFAPFIAP--YSPVEQHLEDRLKPPCEKYW--FGTDEFGRDI 77
NK +GL I +F++L+AIF I P YS + P ++ FGT F I
Sbjct: 16 NKKSRVGLIITVFYILIAIFGQIIFPKTYSLPPSPTTIFMPPQLSNFYLIFGTGPFAESI 75
Query: 78 FSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILA 137
+I+ G++ + + + L + IG+ +G+I+GY GG +D I+M DI+ P+LIL
Sbjct: 76 LVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGITDIILTLPSLILI 135
Query: 138 LAIV-AILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFS 196
+ IV A I + +++ WA AR VR++ L ++ +E R +G S I+F
Sbjct: 136 IIIVSAFKTSNPIFLSLILSITSWAGLARAVRSQVLVIRNSPAVEVLRVLGLSRKYIIFR 195
Query: 197 YILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVT----RA 252
++P + S I + +N+ +A+ L +LG+ P+ +WG M+ A Y +A
Sbjct: 196 EVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPN-NWGAMIQQALSYGAAAGGKA 254
Query: 253 PWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+Y FP + + + G + G+ + P
Sbjct: 255 IYYLAFPTIVVAGFMSGLILLSYGIDEISNP 285
>gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S77574
oligopeptide transport protein homolog ophC -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215733|gb|AAC44510.1| (AF242881) ophC
[Agrobacterium tumefaciens]
Length = 270
Score = 129 bits (321), Expect = 4e-29
Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 2/250 (0%)
Query: 26 MIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGS 85
M+ + + + +FAP IAPY + + + PP GTD GRD+FSR V+G+
Sbjct: 11 MLAILAVFLCFICVVFAPLIAPYG-LNEIVGTSWDPPSASNLLGTDMIGRDLFSRFVWGA 69
Query: 86 RIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILG 145
RI ++V + LI+ IG LGL++G G +D + R VD+V + P LILA+ ++ IL
Sbjct: 70 RITILVASLAVLIAFLIGSGLGLLAGLRKGWLDMALSRFVDLVMSMPTLILAMMLLTILP 129
Query: 146 PGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSS 205
+ + IALV + R+ R + L GE+ I+ ILPN ++
Sbjct: 130 RSVAFIVAIIALVEATRFFRLARLLAADI-AALDYSGRFLRGETTQWIIRHEILPNAITP 188
Query: 206 ILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMT 265
+L + +++ S+LSFLGLG QPP DWG ++ + + ++ PG AI
Sbjct: 189 LLAELALRFIFSVLFLSTLSFLGLGLQPPMTDWGSLIKENKDGLLFGITAALLPGAAIAV 248
Query: 266 LVLGFNFVGD 275
L L + D
Sbjct: 249 LALAVTTLTD 258
>sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMID
>gi|98017|pir||S11151 amiD protein - Streptococcus
pneumoniae >gi|47345|emb|CAA35215.1| (X17337) AmiD
protein [Streptococcus pneumoniae]
Length = 308
Score = 129 bits (320), Expect = 5e-29
Identities = 77/279 (27%), Positives = 140/279 (49%), Gaps = 7/279 (2%)
Query: 10 SMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPY-----SPVEQHLEDRLKPPCE 64
S W + +F K K ++ LGI++ +L++ P + + S V +KP E
Sbjct: 28 SYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVRYIKPNAE 87
Query: 65 KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRA 124
+WFGTD G+ +F + +G+R ++++ +I +I+ IGV +G I G VD ++M
Sbjct: 88 -HWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWG-ISKSVDRVMMEV 145
Query: 125 VDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
+++ P L++ + + +G G N + A+++ W A ++R + L ++ + A+R
Sbjct: 146 YNVISNIPPLLIVIVLTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASR 205
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
+G L+I+ I+P ++S I+ +T +PS I + LSF GLG P G ++S
Sbjct: 206 TLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFISYEAFLSFFGLGLPITVPSLGRLISD 265
Query: 245 ARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
VT + P ++ + L VG L DA P
Sbjct: 266 YSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDP 304
>pir||C71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328913|gb|AAC68078.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 578
Score = 126 bits (313), Expect = 3e-28
Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 8/223 (3%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+W T +D+ + +++G RIA+VVG + I+ IG+ +GL+SGYFGGKVD ++ R
Sbjct: 357 WWQLTRINRKDLLASLIFGIRIAIVVGGLGVSIALFIGIIVGLLSGYFGGKVDMLLSRVT 416
Query: 126 DIVWAFPALILALAIVAIL-GPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
+I P L + + +VAI LI + + GW S +R VR ETL + ++ AA
Sbjct: 417 EIWETMPMLFILMLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAAT 476
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
+ S I+ ILPNV+ ++ L+ +++ + I + L+FLGLG + S WG +L
Sbjct: 477 NLCYSHYHIMVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLG-EESSASWGNLL-- 533
Query: 245 ARVYVTRAPWYSIF---PGLAIMTLVLGFNFVGDGLRDAIQPE 284
R VT P S P + + L++ +GDG+RDA+ P+
Sbjct: 534 -REGVTAFPSESAILWPPAIMLTLLLMAIAVIGDGIRDALDPK 575
>pir||T35054 probable transport system permease protein - Streptomyces
coelicolor >gi|3483045|emb|CAA20556.1| (AL031371)
putative transport system permease protein [Streptomyces
coelicolor A3(2)]
Length = 601
Score = 125 bits (312), Expect = 5e-28
Identities = 73/239 (30%), Positives = 115/239 (47%), Gaps = 8/239 (3%)
Query: 28 GLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRI 87
GL +++ L+ F P+ RL+ P + FGTD GRD+ +R+ +G+
Sbjct: 327 GLLPLLYGALLLAVVGFGLTRDPLALDTGQRLRAPSLDHPFGTDALGRDLLARVGHGALD 386
Query: 88 ALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPG 147
L + ++ + GV LGL V + VD V A P +++AL + A+ G G
Sbjct: 387 TLALAAAISAAALLAGVLLGL--------VPRVSAPLVDTVNAVPPVLVALLVTAVAGSG 438
Query: 148 LINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSIL 207
+A+ V WA A + + L I A + +G + +L +LP V+ +L
Sbjct: 439 AATPALAVGAVAWAPLAAHTSSLLRQERATLHITATKGLGAGPVHLLRHELLPAVVPPVL 498
Query: 208 VLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTL 266
+P + +SL FLGLGAQPPSP+WGL+L+ + Y RAPW + P + L
Sbjct: 499 RHALLRLPGVALALASLGFLGLGAQPPSPEWGLLLAENQPYAERAPWAVLAPAAVLALL 557
>pir||G72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980513|gb|AAD35123.1|AE001690_17 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 280
Score = 125 bits (310), Expect = 8e-28
Identities = 72/269 (26%), Positives = 134/269 (49%), Gaps = 10/269 (3%)
Query: 21 KNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSR 80
KNK +IG I +F++ + IF P P E D +PP + GTD +GRD+ ++
Sbjct: 11 KNKKFIIGFSIFLFFLFLGIFGPMFYRVDPTEMTW-DYEQPPSSAHPLGTDTYGRDVLAQ 69
Query: 81 IVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAI 140
+++G R +L +G + A+IS IG +G S G VD+++M +IV P++++A+ I
Sbjct: 70 LLHGIRSSLYIGFLAAIISLVIGTIIGSFSAVKRGIVDDVLMGITNIVLTTPSILIAILI 129
Query: 141 VAILGPGLINAM-IAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYIL 199
+ L + + + + L W +AR +RA+ +SV ++ + G SDLR++ ++
Sbjct: 130 ASYLKVRSVEMVAVILGLFQWPWFARAIRAQLMSVMSREYVYLSVMAGYSDLRLVIEDLI 189
Query: 200 PNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSP-----DWGLMLSSARVYVTRAPW 254
P + + + I I+ + LS +GLG W +++ + R + W
Sbjct: 190 PTIATYAFMSFVLFINGGIMGEAGLSLIGLGPTQGISLGIMLQWAVLMEAVRRGLW---W 246
Query: 255 YSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+ + PGLAI+ + + + + P
Sbjct: 247 WFVPPGLAIVAVTASLLVISTAMDEVFNP 275
>pir||F81668 peptide ABC transporter, permease protein, probable TC0763
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190788|gb|AAF39566.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 578
Score = 123 bits (305), Expect = 3e-27
Identities = 75/223 (33%), Positives = 123/223 (54%), Gaps = 8/223 (3%)
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
+W T +D+ + +++G RIA+VVG + I+ IG +GL+SGYFGGK+D ++ R
Sbjct: 357 WWQLTRINRKDLLASLIFGIRIAIVVGGLGVTIALFIGTIVGLLSGYFGGKIDMLLSRVT 416
Query: 126 DIVWAFPALILALAIVAIL-GPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184
+I P L + + +VAI LI + + GW S +R VR ETL + ++ AA
Sbjct: 417 EIWETMPMLFILMLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAAT 476
Query: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244
+ S I+ ILPNV+ ++ L+ +++ + I + L+FLGLG + S WG +L
Sbjct: 477 NLCYSHYHIMVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLG-EESSASWGNLL-- 533
Query: 245 ARVYVTRAPWYSIF---PGLAIMTLVLGFNFVGDGLRDAIQPE 284
R V+ P S P + + L++ +GDG+RDA+ P+
Sbjct: 534 -REGVSAFPSESAILWPPAVMLTLLLMSIAVIGDGIRDALDPK 575
>pir||D81253 probable peptide ABC-transport system permease protein Cj1582c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968999|emb|CAB73570.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 264
Score = 122 bits (303), Expect = 5e-27
Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 4/254 (1%)
Query: 26 MIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGS 85
+I L +IF L A+FAPF+A + + HLE+ + P Y GTD GRD+FSR+++
Sbjct: 7 LIILAPLIFLFLCALFAPFLALFDILSTHLENLHQAPNFTYILGTDFLGRDLFSRLLFAL 66
Query: 86 RIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILG 145
R +L++G+ +L+S + ++ F MR ++ A PA +L + +++
Sbjct: 67 RNSLIIGVGGSLLSIIFALCYLFLARCF---FYVFCMRILEFFLALPAFLLMMFFQSMIT 123
Query: 146 PGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSS 205
+ + IAL+ W AR++ +E ++ F +A +G + R F ++P + +
Sbjct: 124 SDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKANIVLGRTKFRAFFKDLIPALKTL 183
Query: 206 ILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLS-SARVYVTRAPWYSIFPGLAIM 264
I L +NI AI T ++LSF GLG P G +LS S++ A W +FP L+++
Sbjct: 184 IFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGTLLSESSKAVFIGAWWMILFPLLSLL 243
Query: 265 TLVLGFNFVGDGLR 278
L L ++G+ L+
Sbjct: 244 LLFLPLLWLGNFLQ 257
>pir||C72059 peptide ABC transporter, permease protein, probable CP0151
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376892|gb|AAD18736.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189087|gb|AAF38033.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39] >gi|8978969|dbj|BAA98804.1| (AP002547)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 579
Score = 120 bits (298), Expect = 2e-26
Identities = 71/213 (33%), Positives = 117/213 (54%), Gaps = 8/213 (3%)
Query: 75 RDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPAL 134
+D+ + +V+G RIALVV I I+ AIG+ +GL+SGYFGG VD I+ R +I P L
Sbjct: 366 KDLLAALVFGIRIALVVAGIGITIALAIGIMIGLVSGYFGGTVDMILSRFTEIWETMPVL 425
Query: 135 ILALAIVAIL-GPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRI 193
+ + +++I L+ + + W ++R VR E L ++ ++ AA +G S I
Sbjct: 426 FILMLVISITQQKSLLLNTVLLGCFSWTGFSRYVRIEVLKQRDRGYVLAATNLGYSHYYI 485
Query: 194 LFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAP 253
+ ILPN + ++ L+ + + + I + L+FLGLG + S WG ++ R VT P
Sbjct: 486 MVHQILPNAIVPVISLVPFAMMAMISCEAGLTFLGLG-EESSASWGNLM---REGVTGFP 541
Query: 254 WYSIF---PGLAIMTLVLGFNFVGDGLRDAIQP 283
S P + + L++ +GDG+RDA+ P
Sbjct: 542 AESAVLWPPAIILTMLLIAIALIGDGVRDALDP 574
>emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 308
Score = 120 bits (297), Expect = 3e-26
Identities = 70/278 (25%), Positives = 141/278 (50%), Gaps = 5/278 (1%)
Query: 10 SMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVE-QHLEDRLKP---PCEK 65
S W + +F K + L I++ ++++ P A Y + ++ D K P +
Sbjct: 28 SYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKRYIWPNAE 87
Query: 66 YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAV 125
YWFGTD+ G+ +F + YG+R ++++ +I LI+ IGV LG I G D++++
Sbjct: 88 YWFGTDKNGQSLFDGVGYGARNSILISVIATLINITIGVVLGAIWGV-SKAFDKVMIEIY 146
Query: 126 DIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARA 185
+I+ P++++ + + LG G N ++A + GW A +R + L ++ + A++
Sbjct: 147 NIISNIPSMLIIIVLTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQT 206
Query: 186 IGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA 245
+G +I +LP ++S I+ +++ +P + + + LSF G+G +P G ++++
Sbjct: 207 LGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVSSETFLSFFGIGLPTTTPSLGRLIANY 266
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+T + P + ++ + L VG L DA P
Sbjct: 267 SSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDP 304
>gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 326
Score = 116 bits (289), Expect = 2e-25
Identities = 75/272 (27%), Positives = 132/272 (47%), Gaps = 11/272 (4%)
Query: 21 KNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSR 80
+ ++ +G I++ ++ ++ F PY+P + L PP ++ GTD++G DIFS+
Sbjct: 31 EQRVSRVGFYILLGIIVFSLIGVFYTPYNPSATNFPRDL-PPSPQHLLGTDDYGHDIFSQ 89
Query: 81 IVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKV-DEIIMRAVDIVWAFPALILALA 139
++ G + VG V LI I + +G+ +G + + D I+ I P +++
Sbjct: 90 LLVGGFPVIGVGFAVGLIGTLIAILIGVTAGLYAETIIDRILSAITQIFLIIPGILIIEL 149
Query: 140 IVAILGP-----GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRIL 194
I A LG G I ++ ++L GWA ARV+R+ LS++ +I ++ IGES L ++
Sbjct: 150 IGAYLGALQFKLGYITILLTLSLTGWAWGARVLRSLVLSLRRREYILSSDLIGESKLSVI 209
Query: 195 FSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLML---SSARVYVTR 251
F+ I+PN + I + I + + + GLG+ +WG ML Y+
Sbjct: 210 FNQIIPNNLPFIASNFFFTAIYGIAGFTFIYYFGLGSL-TQVNWGTMLYWSLGGEAYLRG 268
Query: 252 APWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
W+ I PGL I + F + G+ P
Sbjct: 269 LWWWYIPPGLMIGLVAFSFALINIGIDRVANP 300
>gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 323
Score = 116 bits (288), Expect = 3e-25
Identities = 82/275 (29%), Positives = 135/275 (48%), Gaps = 16/275 (5%)
Query: 22 NKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRI 81
NK + G+ II+ + I F PY PV + L PP + GTDEFG D+ S +
Sbjct: 17 NKFILAGIVIILVDFAIGIVGAFWTPY-PVSETFGISL-PPSSAHILGTDEFGHDVLSVM 74
Query: 82 VYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDI-VWAFPALILALAI 140
+ + +L+VGI V + A I +GL GY+GGK+ +I+ + I P +IL + I
Sbjct: 75 MASTLTSLIVGISVGALIAIISTLIGLFGGYYGGKISGVIIDILTITALTIPGVILLVII 134
Query: 141 VAI---------LGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191
A + I +I +A+ WA A+ +RA+ LS+ + +I A+R IGE
Sbjct: 135 EAYFRAASSTINITLSYIIVVIGLAITSWAFGAKQIRAQVLSISKRDYIIASRLIGEKSW 194
Query: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLML---SSARVY 248
RI+F+ ILP+++ + + + I++ + F G+ + G ML SS Y
Sbjct: 195 RIIFNQILPSILPLTVAQFLFGVLYGILSLITAEFWGV-LPTNINNLGTMLFFISSNGAY 253
Query: 249 VTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
++ W+ + + IM L G + G+ + I P
Sbjct: 254 LSNQWWWILGAIIPIMVLGAGLGILNIGIDEFIDP 288
>pir||G82377 ABC transporter, permease protein VCA1100 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658547|gb|AAF96992.1| (AE004435) ABC transporter,
permease protein [Vibrio cholerae]
Length = 270
Score = 115 bits (285), Expect = 7e-25
Identities = 70/260 (26%), Positives = 127/260 (47%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRD 76
++ +K +G+ ++I V++ + + P +Q L L P GTD +GR
Sbjct: 8 MKLHLSKPQWLGVSLLILLVMLVLIEHLLYGGDPAKQDLNRALAAPSWGEPLGTDHYGRS 67
Query: 77 IFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALIL 136
F+R+ +L + + SA +G+ G+++ + G D ++++ A P LIL
Sbjct: 68 NFARLSSAIATSLTMAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLIL 127
Query: 137 ALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFS 196
L A++ +AIAL+ W + RVVR++TLS+ E+ IEA+R G + +
Sbjct: 128 VLLFGAMVPGSFFILYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFRR 187
Query: 197 YILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYS 256
++ P + + L + +AI+ +S+ FL +G +PP + G+M+ Y +A W
Sbjct: 188 HLWPELREDLFTLACFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWVL 247
Query: 257 IFPGLAIMTLVLGFNFVGDG 276
P L + LVL F + G
Sbjct: 248 AQPILVVFILVLSFQMLAKG 267
>gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 270
Score = 113 bits (280), Expect = 3e-24
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%)
Query: 44 FIAPYS------PVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVAL 97
FIA Y P E +L R P ++WFGTD GRD++ R G+ +L +G+ AL
Sbjct: 21 FIAGYGYATLSQPPEVNLLARHLSPDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAAL 80
Query: 98 ISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIAL 157
S I + + ++ ++D ++ D + A P L+L + I LG G + A+AL
Sbjct: 81 CSGVIALVMAAVARIHP-RLDLLVRLITDAMLAMPHLLLLILICFTLGGGKSGVIAAVAL 139
Query: 158 VGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSA 217
W A ++RA+ V + ++ +G L + P ++ L P A
Sbjct: 140 THWPRLALILRADAERVAQSDYLTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHA 199
Query: 218 IITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSI-FPGLAIMTLVLGFN 271
++ +++LSFLG G P P GL+L+ A +++ W+ + FPGL + TLV+ F+
Sbjct: 200 VLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVLFPGLMLFTLVMLFD 254
>emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related protein [Thermoplasma
acidophilum]
Length = 716
Score = 111 bits (275), Expect = 1e-23
Identities = 66/218 (30%), Positives = 109/218 (49%), Gaps = 4/218 (1%)
Query: 69 GTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIV 128
GT + G+D++S + L +G++V + I + +G++ GYF G V ++ V
Sbjct: 494 GTTDHGKDVWSLFIGSFPTDLYIGVVVGIGILLISMVIGMLIGYFTGIVSSLVETFSLAV 553
Query: 129 WAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGE 188
+ P L L + + +I+GP LI + + + W + S+K F+EAA+ G
Sbjct: 554 YLIPGLPLLIVVASIVGPSLIGLIAVLTFLSWPFPTFTLIGIIRSLKSRAFVEAAKISGA 613
Query: 189 SDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLS---SA 245
S + IL ++LPN+ ++ L NI A+ S+L LG+ A P WG MLS S
Sbjct: 614 STMYILRKHMLPNITPILVYLTAINIGGAVAAVSTLQILGV-APLNVPTWGGMLSGFYSD 672
Query: 246 RVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+ APW+ I P +A+ + F FV GL + + P
Sbjct: 673 YFDLIIAPWWFIPPIVALTLFIFAFIFVSRGLDEVVNP 710
>emb|CAC17496.1| (AL450432) putative transport system integral membrane protein
[Streptomyces coelicolor]
Length = 284
Score = 111 bits (275), Expect = 1e-23
Identities = 71/247 (28%), Positives = 127/247 (50%), Gaps = 3/247 (1%)
Query: 36 VLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIV 95
+L+A+ P +AP+SP Q L + P ++ GTD GRD+ SR++ G R ++ +
Sbjct: 35 LLLALLGPLVAPHSPTAQ-LAAPFQQPDGRFLLGTDVLGRDVASRVLGGGRTIVLTALAG 93
Query: 96 ALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMI-A 154
+ A+G+T G+++ ++ ++ +R VD + PAL++ L + A PG A++ A
Sbjct: 94 TAGAGAVGMTAGVLAAMVSRRLGDLTVRCVDALAVLPALLVVLVLAAGF-PGSDAALVTA 152
Query: 155 IALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNI 214
+AL RV+RA +V ++EAA A G++ +L +LPN+ L+ +
Sbjct: 153 VALATAPFSTRVLRAAADTVLHSGYVEAALARGDTRRAVLRHDVLPNIAGPALMDTALRL 212
Query: 215 PSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVG 274
+++ ++ FLGLG +PDWG M+S T A + P L ++ L + +
Sbjct: 213 VASLHLTATAGFLGLGRGGAAPDWGRMVSENVPGATLAAAPFLAPALLLVLLSVCVGLLA 272
Query: 275 DGLRDAI 281
L D +
Sbjct: 273 GRLADTV 279
>dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus]
Length = 271
Score = 105 bits (260), Expect = 6e-22
Identities = 70/234 (29%), Positives = 118/234 (49%), Gaps = 11/234 (4%)
Query: 40 IFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALIS 99
IFA F P S E +L RL PP +WFGTD GRD+FSR + +L + I S
Sbjct: 22 IFAYFW-PNSGQEMNLLARLSPPNYLHWFGTDWLGRDMFSRTLKALMHSLSMTGIAIFFS 80
Query: 100 AAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGLINAMIAIALVG 159
A+I + L +I+ + + +I VD + P+L+L + + G G M AIAL
Sbjct: 81 ASIALMLAIIAN-LNRRWNMLIDFIVDCALSLPSLLLLMILTVSFGSGSQGVMFAIALSH 139
Query: 160 WASYARVVRAETLSVKEELFIEAARAIGESDLRIL----FSYILPNVMSSILVLITYNIP 215
W R+ ++E S+ ++ A G + ++ F ++LP M+ +L+L+ P
Sbjct: 140 WPKLTRLCKSEIQSLMCSDYMSHALNFGHKKIHVILQHAFPHLLPQWMTGMLLLL----P 195
Query: 216 SAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWY-SIFPGLAIMTLVL 268
++ +++LSFLG G+ P G + A Y+ W+ ++ PGL ++ ++
Sbjct: 196 HGLLHSAALSFLGFGSDPTRASMGKIFDEANSYLLTGQWWLAVLPGLMLVFTII 249
>emb|CAC12448.1| (AL445067) oligopeptide transport system, permease protein appC
related protein [Thermoplasma acidophilum]
Length = 318
Score = 104 bits (258), Expect = 1e-21
Identities = 76/275 (27%), Positives = 133/275 (47%), Gaps = 13/275 (4%)
Query: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRD 76
L+ K+K G I L I+ + ++ IF PY+P E +L + PP GT +G+D
Sbjct: 34 LKNSKSKAGFILLVSIVIFSIIGIF---YRPYNP-EAYLFAKALPPNSVNILGTTGYGQD 89
Query: 77 IFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALIL 136
+FS+++ G+ L++ V + I V +GL++G+ V+ I + I P ++L
Sbjct: 90 VFSQLIAGAAPTLMIAFSVGIAGTLISVFVGLLAGFSSPAVNGAINAIISIFLVVPGVLL 149
Query: 137 ALAI-VAILG----PGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191
+ LG G + +I + + GWA AR R+ TLS+ + +I ++ IGES L
Sbjct: 150 IMLFGTYFLGIHQSLGYLPTIIILVITGWAFGARTFRSITLSIAKRDYILSSLLIGESRL 209
Query: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSA---RVY 248
I+F I+ +M ++ + + + + +LG+G +WG ML A Y
Sbjct: 210 SIIFRQIMRAIMPVVVSNFFFTSMYGAMGLTFVEYLGVG-NIEQVNWGTMLYWAINNEAY 268
Query: 249 VTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
+T W+ + P + I L+ F + GL + P
Sbjct: 269 LTGQWWWILPPSIMISLLMFSFILLNFGLDEMANP 303
>pir||A72421 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980561|gb|AAD35167.1|AE001694_3 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 287
Score = 102 bits (253), Expect = 4e-21
Identities = 72/260 (27%), Positives = 126/260 (47%), Gaps = 7/260 (2%)
Query: 30 GIIIFWVLVAI-FAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSRIA 88
G I+ VL+ + F +PY+P + R PP + GT+ G+DIF ++ + R +
Sbjct: 19 GFIVLLVLLTLSILSFFSPYNPYLWNQVPRDLPPHWPHILGTNSMGQDIFWKLTFAVRNS 78
Query: 89 LVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL 148
LV+ +I L+S I + +G+I+GY GG D ++ D P I+ + + +I+ L
Sbjct: 79 LVMSLIAGLVSRIIAMIVGMIAGYKGGAADRVLTFLSDSFLVIPLFIIIVLVASIVKGRL 138
Query: 149 INAMIAIAL--VGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSI 206
M+ + L GWA ARV+R++ LS++E F A G L I+F LP ++ I
Sbjct: 139 SLPMLGLLLGVFGWAWDARVIRSQVLSLRERDFTYTALLSGSKALSIVFKEYLPFLIPLI 198
Query: 207 LVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLS---SARVYVTRAPWYSIFPGLAI 263
+ N+ AI +L+ LG+ + P G ML + + + W+ + P L
Sbjct: 199 FATLIGNMSWAIGMEITLAILGV-SNLDIPTLGTMLQWSINYQALLLGYWWWVLTPVLTS 257
Query: 264 MTLVLGFNFVGDGLRDAIQP 283
+ L + + + + + P
Sbjct: 258 IFLFIALYLISISISEYLDP 277
>pir||C72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980802|gb|AAD35390.1|AE001712_3 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 96.0 bits (235), Expect = 5e-19
Identities = 67/241 (27%), Positives = 123/241 (50%), Gaps = 19/241 (7%)
Query: 1 MRRKVKKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLK 60
M+R ++ MW LRFK + ++ VL++I + F +PY P + ++ +
Sbjct: 1 MKRILRLFFDMWED--LRFK------YAVTVLTALVLLSILSIF-SPYDPYKWYVLPTNQ 51
Query: 61 PPCEKYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEI 120
PP ++ GTD G+DIF + + + +L++ I A+ S I +T+G++SGY GG D I
Sbjct: 52 PPSLEHILGTDGKGQDIFWLLTFSLKNSLILATIAAVFSRIIAITIGMLSGYLGGTTDRI 111
Query: 121 IMRAVDIVWAFPALILALAIVAILGPGLINAMIA--IALVGWASYARVVRAETLSVKEEL 178
+M D P L L + +++ L ++ I + GWA ARV+R+ LS++E
Sbjct: 112 LMALTDTFMVMPVFPLLLLLSSLIKNYLSLPILGLIIGVFGWAGDARVIRSMILSLRERE 171
Query: 179 FIEAARAIGESDLRILFS----YILPNV----MSSILVLITYNIPSAIITASSLSFLGLG 230
F+ ++ G ++F Y++P + + S++ I + I AI+ + + LG
Sbjct: 172 FVVTSKFSGMRTFEVVFGDFVPYLIPVISGGFIGSMMGAIGFEIVLAILGFTRVEIPTLG 231
Query: 231 A 231
+
Sbjct: 232 S 232
>sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|2146482|pir||S73941 oligopeptide transport system
permease protein amiD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674317|gb|AAB96263.1| (AE000058)
oligopeptide transport system permease protein AmiD
[Mycoplasma pneumoniae]
Length = 376
Score = 80.4 bits (195), Expect = 2e-14
Identities = 65/227 (28%), Positives = 107/227 (46%), Gaps = 14/227 (6%)
Query: 69 GTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKV-DEIIMRAVDI 127
GT+ G DI++ + +L + I+VAL+S G G I+G F G+ D I+ R ++I
Sbjct: 153 GTNGLGVDIWTLLWASMAKSLWIAIVVALVSMVFGTIYGAIAGSFVGRAADNIMSRIIEI 212
Query: 128 VWAFPALILALAIVAILGPGLIN------AMIAIALVGWASYARVVRAETLSVKEELFIE 181
+ P+++ + + A G + + + V W A R L K+ +I+
Sbjct: 213 IDLVPSILWIIVLGATFRFGGVKQFDDSVVIFTLIFVFWTWPAATTRIYILKNKDTEYIQ 272
Query: 182 AARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL- 240
AAR +G +RI+F ++LP V + V+ IP+ I +SL FLGL P+ + GL
Sbjct: 273 AARTLGAKQIRIIFVHMLPVVTGRLAVVFVSLIPAVIGYEASLVFLGL---KPATEVGLG 329
Query: 241 -MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKV 286
+L+ A S AI+T + + L DAI P +
Sbjct: 330 ALLNQVTSSGNIALITSSIVSFAILT--VSTRVFANALNDAIDPRVI 374
>sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1361736|pir||F64208 oligopeptide transport system
permease dciAC homolog - Mycoplasma genitalium
>gi|1045755|gb|AAC71296.1| (U39688) oligopeptide ABC
transporter, permease protein (oppC) [Mycoplasma
genitalium]
Length = 376
Score = 77.6 bits (188), Expect = 2e-13
Identities = 62/227 (27%), Positives = 107/227 (46%), Gaps = 14/227 (6%)
Query: 69 GTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKV-DEIIMRAVDI 127
GT+ G DI++ + +L + ++VA+I+ G G ++G F G + D I+ R ++I
Sbjct: 153 GTNGLGIDIWTLLWASVAKSLWIAVVVAIIAMVFGTIYGAVAGSFVGHMADNIMSRIIEI 212
Query: 128 VWAFPALILALAIVAILGPGLIN------AMIAIALVGWASYARVVRAETLSVKEELFIE 181
+ P+++ + + A G + + + V W A R L K+ +I+
Sbjct: 213 IDIVPSILWIIVLGATFRFGGVKQFDDSVVIFTLIFVFWTWPATTTRIYILKNKDTEYIQ 272
Query: 182 AARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGL- 240
AA+ +G +RI+F ++LP V + V+ IP+ I +SL FLGL P+ D GL
Sbjct: 273 AAKTLGAHQIRIIFVHMLPVVFGRLAVVFVSLIPAVIGYEASLVFLGL---KPATDIGLG 329
Query: 241 -MLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPEKV 286
+L+ A S A++T+ + L DAI P V
Sbjct: 330 ALLNQVTSSDNVALILSSIVSFAVLTVAA--RTFANALNDAIDPRVV 374
>emb|CAC00365.1| (AL160371) probable hypothetical ABC transporter permease protein
ylid [Leishmania major]
Length = 107
Score = 72.6 bits (175), Expect = 5e-12
Identities = 31/69 (44%), Positives = 44/69 (62%)
Query: 214 IPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTLVLGFNFV 273
I ++I AS LSFLGLG +PP P+WGLML++ R + PW + PG I + FN +
Sbjct: 38 ISVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTAIYTQPWVAALPGAMIFVTSISFNLL 97
Query: 274 GDGLRDAIQ 282
DG+R A++
Sbjct: 98 ADGIRSAME 106
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.144 0.437
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104237993
Number of Sequences: 2977
Number of extensions: 4112738
Number of successful extensions: 17862
Number of sequences better than 1.0e-10: 139
Number of HSP's better than 0.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 17509
Number of HSP's gapped (non-prelim): 170
length of query: 287
length of database: 189,106,746
effective HSP length: 51
effective length of query: 236
effective length of database: 158,583,909
effective search space: 37425802524
effective search space used: 37425802524
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)