BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0094 (dppD-1) DE:dipeptide ABC transporter,
dipeptide-binding protein
(323 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 647 0.0
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 368 e-101
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 363 2e-99
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 354 6e-97
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 345 5e-94
pir||F72617 probable dipeptide transport system ATP-binding prot... 344 6e-94
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 338 5e-92
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 338 6e-92
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 336 2e-91
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 323 2e-87
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 323 2e-87
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 319 2e-86
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 319 4e-86
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 317 1e-85
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 316 3e-85
pir||G71211 probable oligopeptide transport ATP-binding protein ... 316 3e-85
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 315 4e-85
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 315 5e-85
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 312 5e-84
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 311 6e-84
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 311 8e-84
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 310 2e-83
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 310 2e-83
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 310 2e-83
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 308 5e-83
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 307 9e-83
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 307 1e-82
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 303 2e-81
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 301 9e-81
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 299 3e-80
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 299 3e-80
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 296 2e-79
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 296 2e-79
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 294 9e-79
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 291 1e-77
pir||T45280 probable ABC transporter intracellular ATPase chain ... 288 6e-77
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 282 4e-75
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 280 1e-74
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 280 2e-74
pir||A72452 probable peptide transport ATP-binding protein APE22... 277 2e-73
pir||E72536 probable oligopeptide transport ATP-binding protein ... 276 3e-73
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 275 6e-73
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 273 2e-72
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 273 2e-72
pir||D72720 probable oligopeptide transport ATP-binding protein ... 271 9e-72
pir||E83082 probable ATP-binding component of ABC transporter PA... 270 1e-71
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 270 1e-71
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 269 3e-71
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 269 4e-71
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 268 6e-71
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 266 2e-70
sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 266 3e-70
pir||D71163 probable oligopeptide transport ATP-binding protein ... 266 3e-70
pir||F71211 probable oligopeptide transport ATP-binding protein ... 266 3e-70
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 265 7e-70
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 264 9e-70
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 264 1e-69
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 263 2e-69
pir||E71130 probable oligopeptide transport ATP-binding protein ... 263 2e-69
pir||D83419 probable ATP-binding component of ABC transporter PA... 263 3e-69
pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei ... 262 5e-69
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 262 5e-69
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 262 5e-69
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 262 5e-69
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 261 6e-69
pir||H71951 dipeptide transport system dipeptide transport syste... 258 7e-68
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 257 1e-67
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 256 3e-67
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 252 5e-66
pir||E70141 oligopeptide transport ATP-binding protein oppD - Ly... 251 9e-66
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 251 9e-66
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 249 3e-65
emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyo... 249 3e-65
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 249 3e-65
sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 247 1e-64
pir||E64820 probable oligopeptide transport protein - Escherichi... 247 1e-64
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 247 2e-64
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 247 2e-64
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 246 3e-64
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 246 3e-64
sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 245 7e-64
sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 244 9e-64
gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T... 242 3e-63
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 242 4e-63
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 240 1e-62
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 240 1e-62
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 240 2e-62
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 239 3e-62
pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 ... 239 4e-62
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 239 4e-62
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 238 5e-62
emb|CAC16446.1| (AL450165) putative oligopeptide ABC transporter... 237 1e-61
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 237 1e-61
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 235 6e-61
pir||F71130 probable oligopeptide transport ATP-binding protein ... 234 1e-60
pir||T03431 probable transport protein accB - Agrobacterium tume... 232 4e-60
gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1] 232 4e-60
pir||A72618 probable oligopeptide transport ATP-binding protein ... 231 1e-59
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 230 2e-59
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 229 3e-59
gi|10954941 Probable accB [Agrobacterium tumefaciens] >gi|649829... 229 3e-59
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 229 3e-59
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 228 7e-59
pir||C72536 probable oligopeptide transport ATP-binding protein ... 228 1e-58
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 228 1e-58
gb|AAD48155.1|AF086619_1 (AF086619) ABC transporter homolog [Loo... 228 1e-58
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 228 1e-58
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 227 1e-58
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 226 2e-58
sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 224 8e-58
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 224 1e-57
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 224 1e-57
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 223 2e-57
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 222 3e-57
gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 222 4e-57
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 222 6e-57
pir||F71163 probable oligopeptide transport ATP-binding protein ... 222 6e-57
sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 221 1e-56
dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding prot... 221 1e-56
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 220 1e-56
dbj|BAB04289.1| (AP001509) oligopeptide ABC transporter (ATP-bin... 220 2e-56
pir||B83389 probable ATP-binding component of ABC transporter PA... 219 3e-56
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 219 4e-56
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 219 5e-56
pir||C82442 probable peptide ABC transporter, ATP-binding protei... 218 8e-56
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 217 1e-55
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 217 2e-55
pir||T35982 probable peptide transport ATP-binding protein - Str... 216 2e-55
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 215 7e-55
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 214 1e-54
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 213 2e-54
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 213 2e-54
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 213 2e-54
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 213 3e-54
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 212 4e-54
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 212 5e-54
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 212 6e-54
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 211 8e-54
pir||C72452 probable peptide transport ATP-binding protein APE22... 211 1e-53
emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi] 210 2e-53
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 209 3e-53
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 209 3e-53
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 209 4e-53
gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae] 208 7e-53
pir||S75333 oligopeptide transport protein oppF - Synechocystis ... 208 9e-53
pir||F70141 probable oligopeptide transport ATP-binding protein ... 207 2e-52
emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding prot... 206 3e-52
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 205 5e-52
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 204 1e-51
pir||T35983 probable peptide transport ATP-binding protein - Str... 203 2e-51
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 202 5e-51
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 199 5e-50
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 198 1e-49
pir||A82876 oligopeptide transport system permease protein UU560... 196 2e-49
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 196 3e-49
pir||E71545 probable oligopeptide transport ATPase - Chlamydia t... 195 5e-49
pir||H70788 probable peptidetransport system ABC-transporter ATP... 194 2e-48
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 192 5e-48
gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport pro... 187 2e-46
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 186 3e-46
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 185 4e-46
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 180 3e-44
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 179 4e-44
pir||A72284 oligopeptide ABC transporter, ATP-binding protein - ... 177 2e-43
pir||T35941 probable ABC-type transport systsem ATP-binding prot... 175 5e-43
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 172 4e-42
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 171 1e-41
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 169 5e-41
gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus ... 168 8e-41
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 167 2e-40
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 167 2e-40
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 165 6e-40
emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter... 165 6e-40
gb|AAC18099.1| (AF058302) ATPase component of putative ABC trans... 156 4e-37
sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN ... 148 6e-35
pir||S56325 hisP protein-like nucleotide-binding protein phnK - ... 148 6e-35
gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subuni... 142 5e-33
gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . ... 137 2e-31
sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 130 3e-29
sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 127 2e-28
gb|AAK40809.1| Phosphate ABC transporter, ATP-binding protein [S... 122 6e-27
pir||H72275 phosphate ABC transporter, ATP-binding protein - The... 122 8e-27
pir||H82377 ABC transporter, ATP-binding protein VCA1101 [import... 121 1e-26
pir||B70483 ABC transporter - Aquifex aeolicus >gi|2984332|gb|AA... 120 2e-26
gb|AAA26354.1| (M96263) phnK [Sinorhizobium meliloti] 118 1e-25
gb|AAC67220.1| (U78968) ATPase protein DppD [Streptococcus pyoge... 118 1e-25
emb|CAB65561.1| (AL136058) probable amino acid ABC transporter p... 117 2e-25
pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB... 114 2e-24
gi|10955047 ophD [Agrobacterium tumefaciens] >gi|7445601|pir||S7... 113 3e-24
pir||C75369 amino acid ABC transporter, ATP-binding protein - De... 112 7e-24
dbj|BAB06710.1| (AP001517) phosphate ABC transporter (ATP-bindin... 112 7e-24
pir||T34822 ABC-transporter ATP binding protein - Streptomyces c... 111 9e-24
pir||C81179 spermidine/putrescine ABC transporter, ATP-binding p... 111 1e-23
pir||G83607 polyamine transport protein PotG PA0302 [imported] -... 110 2e-23
pir||H71241 probable multiple sugar-binding transport ATP-bindin... 109 6e-23
gb|AAD23570.1|AF121946_1 (AF121946) maltose transport protein Ma... 109 6e-23
gb|AAD24578.1|AF126010_1 (AF126010) trehalose/maltose transport ... 109 6e-23
pir||G81926 probable polyamine permease ATP-binding protein NMA0... 108 7e-23
emb|CAC17497.1| (AL450432) putative ABC transporter ATP-binding ... 108 7e-23
pir||A64703 ABC transporter, ATP-binding protein - Helicobacter ... 108 1e-22
sp|P40735|YBXA_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 106 5e-22
pir||H71817 probable amino acid ABC transporter, ATP-binding pro... 106 5e-22
pir||D82147 amino acid ABC transporter, ATP-binding protein VC18... 105 8e-22
sp|Q44613|LOLD_BUCAP LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 101 1e-20
pir||F82201 spermidine/putrescine ABC transporter, ATP-binding p... 101 1e-20
pir||A82184 ABC transporter, ATP-binding protein VC1568 [importe... 101 1e-20
pir||E83622 probable ATP-binding component of ABC transporter PA... 100 3e-20
sp|O53899|Y986_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 100 4e-20
pir||S71374 hypothetical protein 2 - Zymomonas mobilis >gi|69578... 99 8e-20
emb|CAB81857.1| (AL161691) putative ABC-transporter ATP-binding ... 98 1e-19
pir||E72598 probable ABC-transporter ATP-binding protein APE1253... 98 1e-19
pir||D81263 probable ABC transport system ATP-binding protein Cj... 97 2e-19
pir||T03479 probable ABC transporter ATP-binding protein - Rhodo... 96 4e-19
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 96 7e-19
sp|P45171|POTA_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING... 95 9e-19
pir||T35675 probable ABC-transport system ATP binding protein - ... 95 9e-19
gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomi... 95 9e-19
pir||F83203 probable ATP-binding component of ABC transporter PA... 95 9e-19
dbj|BAA89347.1| (AB032934) orfC [Vibrio alginolyticus] 94 3e-18
gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Myc... 93 5e-18
gb|AAD10861.1| (U60994) orf k; putative ATP-binding cassette tra... 92 1e-17
pir||T10888 iron utilization protein C - Haemophilus influenzae ... 90 2e-17
pir||D83271 probable ATP-binding component of ABC transporter PA... 90 2e-17
sp|P44513|HITC_HAEIN IRON(III)-TRANSPORT ATP-BINDING PROTEIN HIT... 90 3e-17
gb|AAC21775.1| (U32695) iron(III) ABC transporter, ATP-binding p... 90 3e-17
sp|P72297|OCCP_RHIME OCTOPINE PERMEASE ATP-BINDING PROTEIN P >gi... 89 9e-17
pir||T03558 ribose transport ATP-binding protein - Rhodobacter c... 88 2e-16
pir||D75579 branched-chain amino acid ABC transporter, ATP-bindi... 88 2e-16
emb|CAA88424.1| (Z48540) ABC-type transporter, putative ATP-bind... 87 3e-16
sp|P31219|YBBA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 87 4e-16
pir||B82068 ABC transporter, ATP-binding protein VC2520 [importe... 87 4e-16
dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacill... 86 5e-16
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 86 6e-16
pir||G82993 probable ATP-binding/permease fusion ABC transporter... 85 8e-16
pir||G72418 sugar ABC transporter, ATP-binding protein - Thermot... 85 1e-15
pir||D75444 branched-chain amino acid ABC transporter, ATP-bindi... 84 2e-15
emb|CAC11868.1| (AL445065) ATP-binding protein related resistanc... 84 2e-15
emb|CAC14305.1| (AJ276209) putative ATP-binding protein of an AB... 84 2e-15
pir||T19982 hypothetical protein C47A10.1 - Caenorhabditis elega... 83 3e-15
pir||D72492 probable ABC transporter ATP-binding protein APE2579... 83 3e-15
gb|AAG28500.1|AF196574_3 (AF196574) FrcA [Sinorhizobium meliloti] 83 5e-15
emb|CAB75552.1| (AJ272047) ATPase [Rhizobium leguminosarum bv. v... 82 7e-15
pir||E75579 branched-chain amino acid ABC tranpsorter, ATP bindi... 81 2e-14
pir||T47062 hypothetical protein [imported] - Yersinia pestis >g... 80 3e-14
pir||G72598 probable ABC transporter ATP-binding protein APE1255... 80 4e-14
pir||D83356 probable ATP-binding component of ABC transporter PA... 80 4e-14
dbj|BAB04773.1| (AP001510) transposase (08)/ABC transporter (ATP... 80 4e-14
dbj|BAB10822.1| (AB019223) multidrug resistance p-glycoprotein [... 80 4e-14
gb|AAD37495.1|AF109162_3 (AF109162) HmuV [Corynebacterium diphth... 80 5e-14
gi|11498492 ribose ABC transporter, ATP-binding protein (rbsA-1)... 79 8e-14
sp|P77257|EGO_ECOLI PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN... 78 2e-13
gb|AAG32538.1| (AY005472) SalT [Streptococcus salivarius] 78 2e-13
pir||A72688 probable high-affinity branched-chain amino acid tra... 76 4e-13
sp|P37388|XYLG_ECOLI D-XYLOSE TRANSPORT ATP-BINDING PROTEIN XYLG... 76 5e-13
dbj|BAB06054.1| (AP001515) ABC transporter (ATP-binding protein)... 76 5e-13
pir||G81022 ABC transporter, ATP-binding protein NMB1966 [import... 76 7e-13
pir||B81966 probable ABC transport ATP-binding protein NMA0485 [... 75 9e-13
dbj|BAB07691.1| (AP001520) ABC transporter required for expressi... 74 3e-12
pir||T04251 P-glycoprotein 2 - Arabidopsis thaliana >gi|2108252|... 73 3e-12
pir||H69828 ABC transporter (ATP-binding protein) homolog yheH -... 73 6e-12
pir||T34977 ABC transporter ATP-binding protein - Streptomyces c... 72 1e-11
sp|P47532|P29_MYCGE PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN... 70 3e-11
pir||B71676 probable ABC transporter msbA2 - Rickettsia prowazek... 70 3e-11
emb|CAB66285.1| (AL136519) ABC transporter protein, ATP binding ... 70 3e-11
pir||F82934 ABC transporter UU093 [imported] - Ureaplasma urealy... 70 3e-11
sp|P35020|ABCX_CYACA PROBABLE ATP-DEPENDENT TRANSPORTER YCF16 >g... 70 4e-11
sp|Q56993|HMUV_YERPE HEMIN TRANSPORT SYSTEM ATP-BINDING PROTEIN ... 69 9e-11
pir||G82194 ABC transporter, ATP-binding protein VC1486 [importe... 69 9e-11
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 647 bits (1650), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL
Sbjct: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV
Sbjct: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD
Sbjct: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV
Sbjct: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS 300
EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS
Sbjct: 241 EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS 300
Query: 301 KEKPKLIEVEKEHYVACHLYGGR 323
KEKPKLIEVEKEHYVACHLYGGR
Sbjct: 301 KEKPKLIEVEKEHYVACHLYGGR 323
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 368 bits (934), Expect = e-101
Identities = 182/324 (56%), Positives = 246/324 (75%), Gaps = 7/324 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
EP++++ +L + F T G+VKAI+ VSFD+ KGE AL+GETGCGKSVT++AI +L+
Sbjct: 6 EPILQVRDLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
Query: 63 NAIVKGKIIYKGRN-----LLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
IV G+++Y + LL+L E E+RKIRG EIA IFQDP +SL+P++T+ Q+ E
Sbjct: 66 GRIVGGQVLYYREDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHSSLDPLYTVGYQIAEA 125
Query: 118 FKVH-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+VH K+ + + + V +LK V IPDP++RV +YP ELSGGM+QRV+I + LS P +
Sbjct: 126 MEVHGKIKNIKEGIKKAVDILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLSNNPRI 185
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LIADEPTTALDVT+QAQI++L+ +L+EK++ +++LITHN GVVAE ADRV VMYAG++VE
Sbjct: 186 LIADEPTTALDVTVQAQILDLINQLKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAK 296
I V++IF NPLHPYTQGLLRA+P +LE IPG VPNL+NPP GCRFHPRC KA
Sbjct: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLINPPSGCRFHPRCPKAM 305
Query: 297 EMCSKEKPKLIEVEKEHYVACHLY 320
++C ++ P+L E+E H+VACHLY
Sbjct: 306 DICKQKVPELKEIEPGHFVACHLY 329
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 363 bits (921), Expect = 2e-99
Identities = 180/324 (55%), Positives = 242/324 (74%), Gaps = 7/324 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
EP++++ NL + F T G+VKAI+ VSFD+ KGE AL+GETGCGKSVT++AI +L+
Sbjct: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
Query: 63 NAIVKGKIIYKGRN-----LLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
IV+G+++Y + LL+L E E+RKIRG EIA IFQDP SL+P++T+ Q+ E
Sbjct: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
Query: 118 FKVH-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+VH K+ + + + V +LK V IPDP +RV +YP ELSGGM+QRV+I + +S P +
Sbjct: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LIADEPTTALDVTIQAQI++L+ +++EK++ +++LITHN GVVAE ADRV VMYAG++VE
Sbjct: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAK 296
I V++IF NPLHPYTQGLLRA+P +LE IPG VPNL+ PP GCRFHPRC K
Sbjct: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
Query: 297 EMCSKEKPKLIEVEKEHYVACHLY 320
+C ++ P+L E+E H+VACHLY
Sbjct: 306 SICKEKVPELKEIEPGHFVACHLY 329
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 354 bits (900), Expect = 6e-97
Identities = 183/314 (58%), Positives = 233/314 (73%), Gaps = 2/314 (0%)
Query: 9 IENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA-IVK 67
+ENL F T+ GVVKA+DGVSF++R+GE L ++GE+G GKSVT+ +IMRLL +N IV
Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60
Query: 68 GKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVG 127
GKII+KGRNLLEL E EMRKIRGKEIAMIFQ+P+ +LNPVFTI DQ+ E +H+
Sbjct: 61 GKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEK 120
Query: 128 SILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALD 187
+ LL+ V IP+PEKRV YP +LSGGMRQR MIAM LS +PSLLIADEPTTALD
Sbjct: 121 EARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALD 180
Query: 188 VTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNP 247
VTIQAQI+ LM EL++++ +I+LITH+ GVVAEM+D+V VMYAG+VVE V+ IF P
Sbjct: 181 VTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEP 240
Query: 248 LHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCK-KAKEMCSKEKPKL 306
HPYT LL ++PR + L++IPG VP+ LN P GC+FHPRC+ K C E+P+L
Sbjct: 241 KHPYTYALLESIPRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPEL 300
Query: 307 IEVEKEHYVACHLY 320
+++ H V C +
Sbjct: 301 EDLDGNHKVRCFFW 314
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 345 bits (875), Expect = 5e-94
Identities = 169/313 (53%), Positives = 234/313 (73%), Gaps = 1/313 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PRNA 64
L++++NL F + G+VKA++ VSF + E+L ++GETG GKSVT K+IMRL+ P
Sbjct: 7 LLEVKNLSTWFYMEEGIVKAVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLIKPPGK 66
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
IV G+IIYKG+++L++PE+EM +IRGKEIAMIFQDP+ SLNP++TI DQ+ E + H
Sbjct: 67 IVSGEIIYKGQDILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIGDQLMETIRYHLGY 126
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
V++L++V IP+PEKR+ +YPFE SGGMRQRV+IA+ LS PS+LIADEPTT
Sbjct: 127 DKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSVLIADEPTT 186
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDVTIQAQI+ LM EL+++F+T ++ ITH+ GV+A MADR++VMY G+ VEI ++IF
Sbjct: 187 ALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGGRQVEIGTSDQIF 246
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
+P HPYT+ LLR++PR K +LE+IPG+ P +++ P C F PRC + E C KE P
Sbjct: 247 YSPRHPYTKMLLRSVPRVDKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRVERCLKELP 306
Query: 305 KLIEVEKEHYVAC 317
+L E+E+ HYV C
Sbjct: 307 ELSEIEENHYVRC 319
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 344 bits (874), Expect = 6e-94
Identities = 178/321 (55%), Positives = 233/321 (72%), Gaps = 7/321 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PR 62
+P++++ENL + F T G+VKAI+ VSF I +GE L+GETGCGKSVT++A+ RL+ P
Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP 66
Query: 63 NAIVKGKIIY---KGR--NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
IV+GKI Y GR +++ L E+E+R+IRG+EIA IFQDP +L+P++TI Q+GE
Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGET 126
Query: 118 FKVH-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
H ++ + + V +LK V +PDPEKRVKSYP ELSGGM+QR +I + LS +P L
Sbjct: 127 MLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKL 186
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LIADEPTTALDVTIQAQIM+L+ +L+ + ++LLITHN G+VAE DRV VMYAG +VE
Sbjct: 187 LIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVE 246
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAK 296
APV+E+F NPLHPYT+ L+RA+P LE+IPG VPNL+ PP GCRFHPRC A
Sbjct: 247 EAPVDELFSNPLHPYTRALIRAVPNPLAKIENLEHIPGTVPNLITPPPGCRFHPRCPLAF 306
Query: 297 EMCSKEKPKLIEVEKEHYVAC 317
+ CS+EKP L E H AC
Sbjct: 307 DRCSREKPLLKEYSPGHKAAC 327
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 338 bits (858), Expect = 5e-92
Identities = 177/323 (54%), Positives = 233/323 (71%), Gaps = 6/323 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR-NA 64
L++I+NL F TD GVVKA+DGVSF+I +G L ++GE+GCGKSVTA++I++LL
Sbjct: 4 LLQIKNLRTYFFTDEGVVKAVDGVSFEIEEGRTLGVVGESGCGKSVTARSIIKLLSTAGR 63
Query: 65 IVKGKIIYK--GR--NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
IV G+I+Y G+ +L++ + E+RK+RG+ IAMIFQ+P+ + +PV+TI DQ+ E
Sbjct: 64 IVSGEILYNMDGQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVYTIGDQITEGMIY 123
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
H + V+LL+ V IP PEK + SYPFE SGGMRQR MIAM LS P LLIAD
Sbjct: 124 HFGITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMALSCNPRLLIAD 183
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPTTALDVTIQAQ+++L+ +L+++++ +I++ITHN GVVAEMAD VVVMY G+VVE APV
Sbjct: 184 EPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVVVMYLGRVVESAPV 243
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCK-KAKEMC 299
EE+F NP HPYT LLR++P K LE I G VP+ N PKGCRFHPRC K +C
Sbjct: 244 EELFYNPKHPYTSLLLRSIPVVGKRVERLEVIEGDVPDPRNMPKGCRFHPRCPYMMKGIC 303
Query: 300 SKEKPKLIEVEKEHYVACHLYGG 322
+ +P +EV EH V+C LYGG
Sbjct: 304 DEREPVEVEVGPEHRVSCFLYGG 326
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 338 bits (857), Expect = 6e-92
Identities = 178/327 (54%), Positives = 236/327 (71%), Gaps = 8/327 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E +++I +L + F G VKA+DGVSFDIR+GEIL L+GE+GCGKSVTA++I+R+LP++
Sbjct: 2 EKVLEIRDLKVYFDLTEGTVKAVDGVSFDIRRGEILGLVGESGCGKSVTAQSILRILPKS 61
Query: 64 A-IVKGKIIY--KGRNL----LELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE 116
A IV G+I++ G+ L L+ E+R IRGK+I+MIFQ+P+ S +PV+T+ QM E
Sbjct: 62 ARIVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVYTVGAQMIE 121
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+H+ +V++LK VKIP+ EK V YPFELSGGM QR MIAM +S P+L
Sbjct: 122 AILLHENVSKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIAMAMSLNPTL 181
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
L+ADEPTTALDVTIQAQI+ LM EL++++ +SILLITH+ GVVA+MADRV VMY G +VE
Sbjct: 182 LLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMADRVAVMYLGNIVE 241
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKK-A 295
A V E+F NPLHPYTQ LLR++P+ + LE I G VP+ N P GCRFH RC+K
Sbjct: 242 TAEVFELFKNPLHPYTQALLRSIPKIGIRKTRLETIKGMVPDPYNLPTGCRFHNRCEKFM 301
Query: 296 KEMCSKEKPKLIEVEKEHYVACHLYGG 322
K +C ++P +EV+ H V C LYGG
Sbjct: 302 KGLCDVKEPPEVEVKPGHKVKCFLYGG 328
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 336 bits (852), Expect = 2e-91
Identities = 180/332 (54%), Positives = 225/332 (67%), Gaps = 16/332 (4%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+GE L+ + NL F TD GVVK++DGV+F I+KGE LA++GE+G GKSVT+ +MRL+P
Sbjct: 29 TGEVLLAVNNLKTYFNTDDGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIP 88
Query: 62 R--NAIVKGKIIYKG-----RNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
I G+I++ G RNL+ + E EMR+IRG +I+MIFQ+P+TSLNPV+T+ DQ+
Sbjct: 89 MPPGQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGDQI 148
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
E +H+ +D +L+ V IP PEKRV YP ++SGGMRQRVMIAM LS KP
Sbjct: 149 AEAVVLHQGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSCKP 208
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+LLIADEPTTALDVTIQAQI++LM L+ + SIL ITHN GVVAEMADRVVVMY G+V
Sbjct: 209 ALLIADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYGGRV 268
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPRGHKTE---------RELENIPGRVPNLLNPPKG 285
VE V EIF P HPYT GLL ++PR + E + LE IPG VPN LN P G
Sbjct: 269 VEEGDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGNVPNPLNLPPG 328
Query: 286 CRFHPRCKKAKEMCSKEKPKLIEVEKEHYVAC 317
C F PRCK A CS+ P L + H C
Sbjct: 329 CTFEPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 323 bits (818), Expect = 2e-87
Identities = 157/318 (49%), Positives = 220/318 (68%), Gaps = 1/318 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA- 64
L+ + NL ++F G+VKA+DG+S+ + KGE L ++GE+G GKSV+ +++RL+ RN
Sbjct: 4 LLNVNNLKVEFHRVEGIVKAVDGISYKLNKGESLGIVGESGSGKSVSVLSLLRLINRNGR 63
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
IV G+ I+ G++LL+L + E+R IRGK+I++IFQ+P+TSLNP+ + Q+ E H+L
Sbjct: 64 IVDGEAIFLGKDLLKLNKEELRNIRGKDISIIFQNPMTSLNPIIRVGIQVMEPIIWHRLM 123
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+ ++LL+ V IP+ KR +YPF+ SGGMRQRVMIAM L+ P LLIADEPTT
Sbjct: 124 KNEEARERAIELLERVGIPESPKRFLNYPFQFSGGMRQRVMIAMALACHPKLLIADEPTT 183
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDVTIQAQIM L+ EL+E++ S++ ITH+ V DR++ MYAG++VE APVEEI
Sbjct: 184 ALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYAGKIVEEAPVEEIL 243
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
PLHPYT+GLL + ++L IPG PN P GC+FHPRC A E+C +E+P
Sbjct: 244 KTPLHPYTKGLLNSTLEIGSRGKKLVPIPGNPPNPTKHPSGCKFHPRCSFAMEICQREEP 303
Query: 305 KLIEVEKEHYVACHLYGG 322
L+ + + H VACHL G
Sbjct: 304 PLVNISENHRVACHLIKG 321
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 323 bits (818), Expect = 2e-87
Identities = 166/324 (51%), Positives = 227/324 (69%), Gaps = 1/324 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M + L+ + L F T+ G V +++GVSF+++ GE +A++GE+GCGKSVT+ +IM L+
Sbjct: 1 MKKDTLLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLV 60
Query: 61 PR-NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
IV G I + G++L + ERE RK+RG E++MIFQ+PLTSLNP+FTI +Q+GE+
Sbjct: 61 RSPGKIVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVIL 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
H+ + +++LK V IP E+ +SYP +LSGGMRQRVMIAM L+ +P LLIA
Sbjct: 121 QHQQVTKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDVTIQAQI+ LM +L ++ +T+ILLITH+ GVVAEMAD V+VMYAGQVVE A
Sbjct: 181 DEPTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQAD 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMC 299
V +F P HPYTQGLL + P H + +L++I G VP PKGCRF PRC A E C
Sbjct: 241 VFTLFATPAHPYTQGLLASTPNIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQC 300
Query: 300 SKEKPKLIEVEKEHYVACHLYGGR 323
++P L++ + +V C L+ G+
Sbjct: 301 VHQEPPLMKTGRGQHVRCWLFDGK 324
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 319 bits (810), Expect = 2e-86
Identities = 157/320 (49%), Positives = 228/320 (71%), Gaps = 5/320 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL--PRN 63
L+++ +L+++F T GV KA++GVS+ + GE LA++GE+G GKSVTA+ IM +L P
Sbjct: 2 LLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPG 61
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+ G+I+++GR+LL+L E E RK+RG E+AMIFQD L+SLNPV T+ Q+ EMF VH+
Sbjct: 62 RVTAGEILFEGRDLLKLKEEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHRG 121
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ V+L+ V+IP ++RV+ YP + SGGMRQR+MIAM ++ +P L+IADEPT
Sbjct: 122 MSRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLIIADEPT 181
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVT+QAQ+M+L+ EL+ + ++LITH+ GVVA++AD++ VMYAG++VE APV +I
Sbjct: 182 TALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHDI 241
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
+ P HPYT+GLL ++PR + +EL I G PNL P GC FHPRC A+++C +
Sbjct: 242 YKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTDV 301
Query: 304 PKLIEV---EKEHYVACHLY 320
P L +V + E ACH +
Sbjct: 302 PPLYDVTESDAERGSACHFW 321
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 319 bits (808), Expect = 4e-86
Identities = 164/316 (51%), Positives = 226/316 (70%), Gaps = 2/316 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR--N 63
L+++++L + F T G V+A+ GV+FD++KGE LA++GE+G GKSVT+KA+M L+P
Sbjct: 4 LLEVKDLQVSFDTHAGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPNPPG 63
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I G+I+++GR+L +L E+EM+++RGK+IAMIFQDP+TSLNP TI +Q+ E H+
Sbjct: 64 RIKNGEIVFEGRDLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIGNQIMEGLIKHQG 123
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
++L+ +V IP+PE R+K YP + SGGMRQRV+IAM L+ P LLIADEPT
Sbjct: 124 MSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLLIADEPT 183
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI+ LM ++++K E +I+ ITH+ GVVA +ADRV VMYAG+VVEI V+EI
Sbjct: 184 TALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEIGTVDEI 243
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F NP HPYT GL+ ++P +E EL IPG P+LL PPKG F PR +A ++ +
Sbjct: 244 FYNPKHPYTWGLIASMPSLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALKIDFEMD 303
Query: 304 PKLIEVEKEHYVACHL 319
P L +V HY A L
Sbjct: 304 PPLFKVSDTHYAATWL 319
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 317 bits (804), Expect = 1e-85
Identities = 155/315 (49%), Positives = 223/315 (70%), Gaps = 3/315 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ + +L F + V +A+ GV+F ++ GE+L ++GE+GCGKSVTA +I+RLLP+
Sbjct: 12 LLDVRDLETHFYGEESVTRALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLLPKQTA 71
Query: 66 --VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
V G++I+KGRNLLEL ER+MR++RG IAMIFQDP+TSL+PV T+ Q+ E ++H
Sbjct: 72 KTVGGEVIFKGRNLLELSERQMREVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAVQIHGR 131
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
L++ +++L++V+I DPE+R+ +YP E+SGGMRQR MIAM L+ P LLIADEPT
Sbjct: 132 VSRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAMIAMALACSPELLIADEPT 191
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI+ L+++L+++ T+++ ITH+ GVVAE RV+VMYAG++VE A V ++
Sbjct: 192 TALDVTIQAQILRLIVDLKDRMGTAVMFITHDLGVVAETCQRVIVMYAGRIVEQASVTDL 251
Query: 244 FDNPLHPYTQGLLRALP-RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
F P HPYT+ L+ ++P R + L IPG VP+L P GC F RC A +C ++
Sbjct: 252 FARPTHPYTRALMNSVPDRRRGRQSRLPEIPGVVPSLREPLVGCSFAERCPFAIGVCREK 311
Query: 303 KPKLIEVEKEHYVAC 317
P L E++ H AC
Sbjct: 312 MPVLSEIQPGHAAAC 326
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 316 bits (800), Expect = 3e-85
Identities = 163/317 (51%), Positives = 220/317 (68%), Gaps = 4/317 (1%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR-N 63
PL++++NL+ F T++G +KA+ GV F I G+ L ++GE+G GKS+TA +I+ LL
Sbjct: 4 PLLEVKNLHTYFFTNKGTIKAVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLEYPG 63
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
IV+G+I + G NL+ L ++E+RKIRG +I+MIFQ+P+TSLNPV I Q+ E +H+
Sbjct: 64 KIVQGEINFGGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHRIGRQLSEPLILHQH 123
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ LL+ VKIP+PE V +YPF+LSGGMRQRVMIAM L+ KP LLIADEPT
Sbjct: 124 MSKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAMALACKPRLLIADEPT 183
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI LM +L++K T+I+ ITH+ G +AE+AD V VMY G++VE APV+ I
Sbjct: 184 TALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAVMYTGEIVERAPVDVI 243
Query: 244 FDNPL---HPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS 300
FD HPY +GLL ++P + L I G VP+ L PKGCRF RC+ A E C
Sbjct: 244 FDRQTQFSHPYKEGLLESIPLLDEEVEYLAQIQGSVPHPLKLPKGCRFSTRCEYATEKCR 303
Query: 301 KEKPKLIEVEKEHYVAC 317
EKP+L+EVE+ H + C
Sbjct: 304 NEKPELVEVEEGHLIRC 320
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 316 bits (800), Expect = 3e-85
Identities = 163/319 (51%), Positives = 224/319 (70%), Gaps = 4/319 (1%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL-LP 61
G+ +++++NL + + T RG VKA+D V+FD+ KGE+L L GE+GCGKS +M + P
Sbjct: 5 GKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 64
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
IV G I GR ++ LPE +R+ IR ++I+MIFQ + +LNPV+T+ QM E
Sbjct: 65 PGRIVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 124
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
HK LD +K L++V + DPE V YP ELSGGM+QRV+IAM L +P ++IAD
Sbjct: 125 HKGMDREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIAMALLLEPDIVIAD 182
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPTTALDV +QAQI+NLM L++K S++ ITH+ ++AE++DRV VMYAG++VEI P
Sbjct: 183 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLVEIGPS 242
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS 300
E+I+ P HPYTQ LL A+PR H+ +LE IPG PNL+NPP GCRFHPRC A + C
Sbjct: 243 EKIYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLINPPSGCRFHPRCPYAMDKCK 302
Query: 301 KEKPKLIEVEKEHYVACHL 319
+E+PK++EV+K+HY AC L
Sbjct: 303 EEEPKMVEVDKDHYAACWL 321
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 315 bits (799), Expect = 4e-85
Identities = 162/320 (50%), Positives = 219/320 (67%), Gaps = 3/320 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
E ++++ +L F T+ VKA+DGV+F + KG+ L ++GE+G GKS+T+ +I++L+
Sbjct: 10 ETILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEP 69
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
+V G+I +KG NL+ E MRKIRG EI+MIFQ+P+TSLNPV+T+ Q+ E F++H+
Sbjct: 70 GKVVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHE 129
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
L V +LK+V IP PEKRV YP ELSGGMRQRVMIAM L+ P LLIADEP
Sbjct: 130 KLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIADEP 189
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
TTALDVTIQAQI+ LM +L+++ SI++ITH+ GVVAE D V VMY G+VVE A V+
Sbjct: 190 TTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVKT 249
Query: 243 IFDNPLHPYTQGLLRALPRG--HKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS 300
+F NP HPYT GLL +LPR + EL I G VP+ + P+GCRF PRC A ++C
Sbjct: 250 LFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDICK 309
Query: 301 KEKPKLIEVEKEHYVACHLY 320
+ P L E + + C +Y
Sbjct: 310 ERLPDLETDENGNQIRCWVY 329
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 315 bits (798), Expect = 5e-85
Identities = 165/318 (51%), Positives = 225/318 (69%), Gaps = 2/318 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
E L+++++L I F T G VKAI GV+FD+ KGE LA++GE+G GKSVT K+IMRLLP
Sbjct: 2 EKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEG 61
Query: 63 -NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ I G+I++ G ++ + E++M+KIRGK+IAMIFQDP+TSLNP TI Q+ E H
Sbjct: 62 NSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIKH 121
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ ++LL++V I + E+R+K YP + SGGMRQRV+IA+ L+ P +LIADE
Sbjct: 122 QKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIADE 181
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVTIQAQI++LM +L++K +TSI+ ITH+ GVVA +ADRV VMY G++VEI V+
Sbjct: 182 PTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTVD 241
Query: 242 EIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
EIF NP HPYT GL+ ++P + EL IPG P+LL+PPKG F R K A ++ +
Sbjct: 242 EIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQIDLE 301
Query: 302 EKPKLIEVEKEHYVACHL 319
E+P L +V HY A L
Sbjct: 302 EEPPLFKVSDTHYAATWL 319
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 312 bits (790), Expect = 5e-84
Identities = 156/322 (48%), Positives = 218/322 (67%), Gaps = 2/322 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E ++ ++NL++ F T G V+A+ GVSFD+ KGE A++GE+GCGKSVT+++IM LLP
Sbjct: 2 EKVLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPPY 61
Query: 64 A--IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ + G+I++K ++L L ++EMR IRG +I+MIFQDP+T+LNP T+ DQ+GE H
Sbjct: 62 SAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQLGEALLRH 121
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
K + E++ +L +V IPDP +R+K YP + SGGMRQR++IAM L +P +LIADE
Sbjct: 122 KKMSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPDILIADE 181
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVTIQAQI+ L E++ K + S++LITH+ GVVA++ADRV VMYAG++ EI +
Sbjct: 182 PTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAGKMAEIGTRK 241
Query: 242 EIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
+IF P HPYT+GLL ++PR EL I G P+L +PP GC F RC +C +
Sbjct: 242 DIFYQPQHPYTKGLLGSVPRLDLNGAELTPIDGTPPDLFSPPPGCPFAARCPNRMVVCDR 301
Query: 302 EKPKLIEVEKEHYVACHLYGGR 323
P H V C L R
Sbjct: 302 VYPGQTIRSDSHTVNCWLQDQR 323
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 311 bits (789), Expect = 6e-84
Identities = 158/316 (50%), Positives = 221/316 (69%), Gaps = 4/316 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL-LPRNA 64
+++++NL + + T RG VKA+D V+FD+ KGE+L L GE+GCGKS +M + P
Sbjct: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
Query: 65 IVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
IV G I GR ++ LPE +RK IR ++I+MIFQ + +LNPV+T+ QM E H+
Sbjct: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
LD +K L++V + DPE V YP ELSGGM+QRV+IA L +P ++IADEPT
Sbjct: 125 MSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDV +QAQI+NLM L++K S++ ITH+ ++AE++D++ +MYAG++VEI P E++
Sbjct: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
+ P HPYTQ LL A+PR H+ +LE IPG PNLLNPP GCRFHPRC A + C +E+
Sbjct: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
Query: 304 PKLIEVEKEHYVACHL 319
PK++EV+K+HY AC L
Sbjct: 303 PKMVEVDKDHYAACWL 318
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 311 bits (788), Expect = 8e-84
Identities = 151/312 (48%), Positives = 210/312 (66%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ +++L ++F T G+V A++ ++F +++GE L ++GE+G GKS T AIM LL +N
Sbjct: 4 LLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGK 63
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
+ G ++G+ +L LPERE+ K+R ++IAMIFQDP+TSLNP + DQ+ E+ +HK
Sbjct: 64 ITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGMG 123
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
+E V++L+ VKIP+ KR+ YP E SGGMRQRVMIAM L +P LLIADEPTTA
Sbjct: 124 KAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 183
Query: 186 LDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFD 245
LDVT+QAQIM L+ EL+ +F T+I++ITH+ GVVA D+V+VMYAG+ +E V +IF
Sbjct: 184 LDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIFY 243
Query: 246 NPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPK 305
NP HPY +GLL A+PR L IPG PNLL P GC + RC + + C +E P
Sbjct: 244 NPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKREAPI 303
Query: 306 LIEVEKEHYVAC 317
L+ AC
Sbjct: 304 LLPFGNSRQRAC 315
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 310 bits (785), Expect = 2e-83
Identities = 163/313 (52%), Positives = 223/313 (71%), Gaps = 3/313 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR--N 63
L+++++L I F T G V+AI GV+F + KGE LA++GE+G GKSVT++AIM+L+P
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+G+I+++G++L+ L E+EM+ +RGKEI MIFQDP+TSLNP + Q+ E+ H+
Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ V+LL++V IP PEKRV +P E SGGMRQRV+IAM L+A P LLIADEPT
Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI+ LM +L++K +TSI+ ITH+ GVVA +ADRV VMYAGQ+VE V+EI
Sbjct: 187 TALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEI 246
Query: 244 FDNPLHPYTQGLLRALPRGHKT-ERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
F +P HPYT GLL ++P + E EL IPG P+L NPPKG F R A ++ ++
Sbjct: 247 FYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFEQ 306
Query: 303 KPKLIEVEKEHYV 315
+P + +V HYV
Sbjct: 307 EPPMFKVSDTHYV 319
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 310 bits (785), Expect = 2e-83
Identities = 163/313 (52%), Positives = 223/313 (71%), Gaps = 3/313 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR--N 63
L+++++L I F T G V+AI GV+F + KGE LA++GE+G GKSVT++AIM+L+P
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+G+I+++G++L+ L E+EM+ +RGKEI MIFQDP+TSLNP + Q+ E+ H+
Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ V+LL++V IP PEKRV +P E SGGMRQRV+IAM L+A P LLIADEPT
Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI+ LM +L++K +TSI+ ITH+ GVVA +ADRV VMYAGQ+VE V+EI
Sbjct: 187 TALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEI 246
Query: 244 FDNPLHPYTQGLLRALPRGHKT-ERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
F +P HPYT GLL ++P + E EL IPG P+L NPPKG F R A ++ ++
Sbjct: 247 FYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFEQ 306
Query: 303 KPKLIEVEKEHYV 315
+P + +V HYV
Sbjct: 307 EPPMFKVSDTHYV 319
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 310 bits (785), Expect = 2e-83
Identities = 163/313 (52%), Positives = 223/313 (71%), Gaps = 3/313 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR--N 63
L+++++L I F T G V+AI GV+F + KGE LA++GE+G GKSVT++AIM+L+P
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+G+I+++G++L+ L E+EM+ +RGKEI MIFQDP+TSLNP + Q+ E+ H+
Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ V+LL++V IP PEKRV +P E SGGMRQRV+IAM L+A P LLIADEPT
Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI+ LM +L++K +TSI+ ITH+ GVVA +ADRV VMYAGQ+VE V+EI
Sbjct: 187 TALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEI 246
Query: 244 FDNPLHPYTQGLLRALPRGHKT-ERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
F +P HPYT GLL ++P + E EL IPG P+L NPPKG F R A ++ ++
Sbjct: 247 FYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFEQ 306
Query: 303 KPKLIEVEKEHYV 315
+P + +V HYV
Sbjct: 307 EPPMFKVSDTHYV 319
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 308 bits (781), Expect = 5e-83
Identities = 156/318 (49%), Positives = 219/318 (68%), Gaps = 4/318 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
+++++N+ + + T V A++ VSF + KGE L L+GE+GCGKS +IMRLLP+
Sbjct: 3 VLELKNVSVRYKTGEKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPKGTK 62
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
+ G I +G ++ L + EMR+IRG ++AMIFQDP+TSLNP+ IED EM H+ +
Sbjct: 63 IDGSIKIEGIDISSLSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHRPEL 122
Query: 126 VGSILDEIV-KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
E+ K L+ V I R+K YPF+ SGGMRQRVMIA+ + P++LIADEPTT
Sbjct: 123 SKEDARELAAKALEDVGIN--RNRLKDYPFQFSGGMRQRVMIALSIVLNPAVLIADEPTT 180
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
+LDV +QAQIM L+ +L ++ T+++LITH+ G+VAE ADR+ VMYAG +VE+A E IF
Sbjct: 181 SLDVIVQAQIMELLEKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHLVELASKERIF 240
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
NPLHPYT GLLR++P ++EL IPG P+L NPP+GCRF PRC+KA ++C +++P
Sbjct: 241 TNPLHPYTVGLLRSIPNTDVNDKELRYIPGSPPDLSNPPEGCRFAPRCEKAMKICWEKEP 300
Query: 305 KLIEVEKEHYVACHLYGG 322
E++ V C LYGG
Sbjct: 301 PEFEIDGTR-VKCWLYGG 317
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 307 bits (779), Expect = 9e-83
Identities = 157/320 (49%), Positives = 218/320 (68%), Gaps = 2/320 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR--N 63
+++++ L F TD+G V A+DGVS + +GEI+ ++GE+GCGKSVT+ +IM+L+P
Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I+ G + +KG +L+++ + M++IRG +IAMIFQ+P+TSLNP+FTI +Q+ E + H+
Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ V +L+ V IP ++ YP +LSGGMRQRVMIAM + P +LIADEPT
Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI++LM L E +T+ILLITH+ GVVAE+ +RVVVMYAGQVVE V I
Sbjct: 185 TALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMI 244
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
+P HPYT+GLL++LP+ H+ + L +IPG VP GCRF RC+ A E C
Sbjct: 245 LKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTA 304
Query: 304 PKLIEVEKEHYVACHLYGGR 323
P+L +V H C LY R
Sbjct: 305 PQLQQVATGHQCRCFLYEER 324
>sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075084|pir||C64184 oligopeptide transport
ATP-binding protein oppD - Haemophilus influenzae
(strain Rd KW20) >gi|1574676|gb|AAC22775.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppD)
[Haemophilus influenzae Rd]
Length = 323
Score = 307 bits (778), Expect = 1e-82
Identities = 156/302 (51%), Positives = 212/302 (69%), Gaps = 1/302 (0%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA 64
PL+ ++NLY+ F T GVV A++ ++F + G L ++GE+G GKS TA A+M LL N
Sbjct: 3 PLLDVKNLYVRFKTPDGVVTAVNDLNFTLNAGSTLGIVGESGSGKSQTAFALMGLLAANG 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
V+G I++G+ L+ LP E+ KIR ++I+MIFQDP+TSLNP I +Q+ E+ ++HK
Sbjct: 63 EVEGSAIFEGKELVNLPNAELNKIRAEQISMIFQDPMTSLNPYMKIGEQLMEVLQLHKGY 122
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+ E VK+L VK+P+ +KR+ YP E SGGMRQRVMIAM L +P LLIADEPTT
Sbjct: 123 DKQTAFAESVKMLDAVKMPEAKKRMGMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 182
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDVT+QAQIM L+ EL+ +F T+I++ITH+ GVVA + D+V+VMYAG+ +E E+IF
Sbjct: 183 ALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDQVMVMYAGRTMEYGTAEQIF 242
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
+P HPY+ GL+ A+PR E L IPG PNLL+ PKGC F PRC+ A E C + P
Sbjct: 243 YHPTHPYSIGLMDAIPRLDGNEEHLVTIPGNPPNLLHLPKGCPFSPRCQFATEQC-QIAP 301
Query: 305 KL 306
KL
Sbjct: 302 KL 303
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 303 bits (768), Expect = 2e-81
Identities = 148/299 (49%), Positives = 204/299 (67%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+++ +L + F T G V A++ ++F +R GE L ++GE+G GKS TA A+M LL N
Sbjct: 17 LLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLATNGR 76
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
+ G + GR +L LPERE+ +R ++I+MIFQDP+TSLNP + +Q+ E+ +HK
Sbjct: 77 IGGSATFNGREILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 136
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
+E V++L VK+P+ KR+K YP E SGGMRQRVMIAM L +P LLIADEPTTA
Sbjct: 137 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 196
Query: 186 LDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFD 245
LDVT+QAQIM L+ EL+ +F T+I++ITH+ GVVA + D+V+VMYAG+ +E ++F
Sbjct: 197 LDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFY 256
Query: 246 NPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
P+HPY+ GLL A+PR E+ IPG PNLL PKGC F PRC A E+C+ P
Sbjct: 257 QPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPP 315
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 301 bits (762), Expect = 9e-81
Identities = 158/322 (49%), Positives = 213/322 (66%), Gaps = 2/322 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MS + L++I NL F A+D V+ ++ K E+LA++GE+G GKS A IM L
Sbjct: 1 MSKKALLQIRNLTTAFQIKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLH 60
Query: 61 -PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P ++G+I +KG NL++LP ++ KIRG +++MIFQDPLT+LNP+ I +Q+GE
Sbjct: 61 NPERTKIEGEINFKGENLVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQIGEALL 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+H+ +++ LL +V IP PE + YP ELSGGMRQRVMIA ++ +P LIA
Sbjct: 121 LHRSLTKAERKKKVIDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDVTIQAQI++L+ +L+EK I+LITH+ GVVAEMADRV VMYAGQ+VEIA
Sbjct: 181 DEPTTALDVTIQAQILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIAD 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLN-PPKGCRFHPRCKKAKEM 298
V +F+ PLHPYT+ LL ++P + +L I G VP L N P KGCRF R E
Sbjct: 241 VFTLFERPLHPYTRSLLNSVPSESNDQEKLHVIQGIVPALQNLPRKGCRFKDRIPWLSES 300
Query: 299 CSKEKPKLIEVEKEHYVACHLY 320
++ P+L EVE H+V C Y
Sbjct: 301 AHEDHPELHEVEPGHFVRCTCY 322
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 299 bits (758), Expect = 3e-80
Identities = 147/301 (48%), Positives = 203/301 (66%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ L+ +++L + F T G V A++ ++F +R GE L ++GE+G GKS TA A+M LL N
Sbjct: 17 DALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 76
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+ G + GR +L LPE E+ K+R ++I+MIFQDP+TSLNP + +Q+ E+ +HK
Sbjct: 77 GRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKN 136
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+E V++L VK+P+ KR+K YP E SGGMRQRVMIAM L +P LLIADEPT
Sbjct: 137 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 196
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVT+QAQIM L+ EL+ +F T+I++ITH+ VVA + D+V+VMYAG+ +E ++
Sbjct: 197 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDV 256
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F P+HPY+ GLL A+PR + IPG PNLL PKGC F PRC A E+CS
Sbjct: 257 FYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAP 316
Query: 304 P 304
P
Sbjct: 317 P 317
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 299 bits (758), Expect = 3e-80
Identities = 147/301 (48%), Positives = 203/301 (66%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ L+ +++L + F T G V A++ ++F +R GE L ++GE+G GKS TA A+M LL N
Sbjct: 17 DALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 76
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+ G + GR +L LPE E+ K+R ++I+MIFQDP+TSLNP + +Q+ E+ +HK
Sbjct: 77 GRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKN 136
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+E V++L VK+P+ KR+K YP E SGGMRQRVMIAM L +P LLIADEPT
Sbjct: 137 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 196
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVT+QAQIM L+ EL+ +F T+I++ITH+ VVA + D+V+VMYAG+ +E ++
Sbjct: 197 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDV 256
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F P+HPY+ GLL A+PR + IPG PNLL PKGC F PRC A E+CS
Sbjct: 257 FYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAP 316
Query: 304 P 304
P
Sbjct: 317 P 317
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 296 bits (751), Expect = 2e-79
Identities = 154/321 (47%), Positives = 210/321 (64%), Gaps = 4/321 (1%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL--P 61
E ++ I NL F TD ++A+DG+S I GE L ++GE+G GKSVTA++IM L+ P
Sbjct: 16 ESILSIRNLQTVFRTDHEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDAP 75
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ + I++ G L EL + +++RG + MIFQDPL SLNPV+T+ +Q+ E +++
Sbjct: 76 GEVLPESSIVFDGTELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTVGNQIREALRIN 135
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ D + LL+ V IPDPE+R+ YP E SGGMRQR +IAMML+ P +LI DE
Sbjct: 136 RGITGQEATDVAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDVLICDE 195
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVTIQAQI+ L+ +++ + + +IL ITH+ GV+AE++DRV VMYAG+ VE APVE
Sbjct: 196 PTTALDVTIQAQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVMYAGEFVEKAPVE 255
Query: 242 EIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
E+F NP HPYTQGLL A+P + L I G VP P CRF PRC KA E C++
Sbjct: 256 ELFANPKHPYTQGLLDAIPGTSVDDERLNTIEGDVPTPNQPATDCRFAPRCPKAFEDCTE 315
Query: 302 EKPKLIEVE--KEHYVACHLY 320
P + V +H AC LY
Sbjct: 316 VHPTHVSVSDTHDHSTACLLY 336
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 296 bits (750), Expect = 2e-79
Identities = 145/299 (48%), Positives = 201/299 (66%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+++ +L + F T G V A++ ++F +R GE L ++GE+G GKS + +M LL N
Sbjct: 17 LLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQSRLRLMGLLATNGR 76
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
+ G + GR +L LPERE+ R ++I+MIFQDP+TSLNP + +Q+ E+ +HK
Sbjct: 77 IGGSATFNGREILNLPERELNTRRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 136
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
+E V++L VK+P+ KR+K YP E SGGMRQRVMIAM L +P LLIADEPTTA
Sbjct: 137 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 196
Query: 186 LDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFD 245
LDVT+QAQIM L+ EL+ +F T+I++ITH+ GVVA + D+V+VMYAG+ +E ++F
Sbjct: 197 LDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFY 256
Query: 246 NPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
P+HPY+ GLL A+PR E+ IPG PNLL PKGC F PRC A E+C+ P
Sbjct: 257 QPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPP 315
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 294 bits (745), Expect = 9e-79
Identities = 159/317 (50%), Positives = 208/317 (65%), Gaps = 2/317 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA- 64
L+++ NL F + + A+DGV F I KGE +AL+GE+G GKS+T+ +IM L+ +
Sbjct: 4 LLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQSSGG 63
Query: 65 -IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I+ G I + ++L E + KIRG E++MIFQ+P+TSLNPV TI +Q+ E+ HK
Sbjct: 64 KIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQITEVLIYHKN 123
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
V+LL+MV E+ +K YP LSGGMRQRVMIA+ LS P LLIADEPT
Sbjct: 124 MKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNPKLLIADEPT 183
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQ++ LM +L +KF TSILLITH+ GVV+E ADRV+VMY GQVVE A V+++
Sbjct: 184 TALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCGQVVENATVDDL 243
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F PLHPYT+GLL ++P +L I G VP N P GCRF PRC KA + C +
Sbjct: 244 FLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSVPTPDNLPPGCRFAPRCPKAMDKCWTNQ 303
Query: 304 PKLIEVEKEHYVACHLY 320
P L+ + V C LY
Sbjct: 304 PSLLTHKSGRTVRCFLY 320
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 291 bits (736), Expect = 1e-77
Identities = 150/324 (46%), Positives = 219/324 (67%), Gaps = 11/324 (3%)
Query: 7 VKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP----- 61
+++ +L + F TD G+VK++DG+SF + KG+ L ++GE+G GKSVT+ IM L
Sbjct: 25 LEVRDLKVHFPTDDGLVKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMGLHTAGQYG 84
Query: 62 -RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
R A + G+I G LL +RK+RG+E+AMIFQDPL++L+P +TI Q+ E +++
Sbjct: 85 KRKARISGEIWLDGTELLSADPDHVRKLRGREMAMIFQDPLSALHPYYTIGQQIVEAYRI 144
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
H + V++L V IP P+KRV SYP E SGGMRQR MIAM L P LLIAD
Sbjct: 145 HHKVDKKTAKRRAVEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAMSLVNNPELLIAD 204
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPTTALDVT+QAQI++L+ +L+++F +++++ITH+ GVVAE+AD ++VMY G+ VE P
Sbjct: 205 EPTTALDVTVQAQILDLIRDLQKEFGSAVIVITHDLGVVAELADDLLVMYGGRCVERGPA 264
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERE-LENIPGRVPNLLNPPKGCRFHPRCKKA---- 295
E++F P HPYT GLL ++PR + ++E L + G P+L+N P GC F+PRC A
Sbjct: 265 EKVFYEPRHPYTWGLLGSMPRLDRDQQERLIPVKGSPPSLINLPSGCAFNPRCPYADVPK 324
Query: 296 KEMCSKEKPKLIEVEKEHYVACHL 319
++ +P+L EV +H+ ACH+
Sbjct: 325 DDVTRTVRPELTEVGSKHWAACHM 348
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 288 bits (729), Expect = 6e-77
Identities = 150/325 (46%), Positives = 210/325 (64%), Gaps = 9/325 (2%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
G+ + + +L + F T+ GVVKA+DG+SFD+ +G+ L ++GE+G GKSVT A++ L R
Sbjct: 16 GDAFLSVRDLKVHFSTEGGVVKAVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLGLHDR 75
Query: 63 N-AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ G I G+ L + E+++ K+RGK++AMIFQD LT+L+P +T+ Q+ E F H
Sbjct: 76 RRTAIDGSITLDGQELTDASEKQLEKLRGKKMAMIFQDALTALSPYYTVGRQIAEPFMKH 135
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ LL+ V IP P+KRV YP + SGG+ QR MIAM LS P LLIADE
Sbjct: 136 NGASKKDARCGAIDLLQKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMALSCNPDLLIADE 195
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVT+QAQI++L+ +L+++F ++I++ITH+ GVV MAD ++VMYAG+ VE V
Sbjct: 196 PTTALDVTVQAQILDLLKDLQQEFASAIIMITHDLGVVGNMADDIMVMYAGRAVERGTVR 255
Query: 242 EIFDNPLHPYTQGLLRALPR-GHKTERELENIPGRVPNLLNPPKGCRFHPRC----KKAK 296
E+ +P HPYT GLL ++P + L IPG P+L+NPP GC FHPRC +
Sbjct: 256 EVLKSPQHPYTWGLLSSMPNLTSDVDEPLMPIPGSPPSLMNPPSGCAFHPRCGFTDLVSG 315
Query: 297 EMCSKEKPKLIEVEKEHYVACHLYG 321
E CS E+P L ACHL G
Sbjct: 316 ERCSGERPTL---PHGRAAACHLTG 337
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 282 bits (714), Expect = 4e-75
Identities = 145/314 (46%), Positives = 210/314 (66%), Gaps = 2/314 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ ++ L + F + KA+D +S+ + +GE+L ++GE+G GKSV++ AIM L+
Sbjct: 3 LLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGR 62
Query: 66 VKGKII-YKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
V + + ++ +LL L + R++ G ++AMIFQDP+TSLNP +T+ Q+ E K H+
Sbjct: 63 VSAESLQFENTDLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGG 122
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+ D ++LLK+V IPDPE R+ YP +LSGGM QRVMIAM ++ +P LLIADEPTT
Sbjct: 123 TKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDVTIQAQIM L+LEL++K S++LITH+ +VAE A+R++VMYAGQ+VE ++IF
Sbjct: 183 ALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDIF 242
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
P HPYTQ LLR+LP + + LE++ G VP + P GC +PRC A E C + +P
Sbjct: 243 REPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVEP 302
Query: 305 KLIEVEKEHYVACH 318
+L + V CH
Sbjct: 303 QLHHIGSRK-VKCH 315
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 280 bits (710), Expect = 1e-74
Identities = 151/317 (47%), Positives = 216/317 (67%), Gaps = 7/317 (2%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR-NA 64
L+ IENL F T RGVV+A+D VS + KGE ++++GE+GCGKS A ++MRL+
Sbjct: 3 LLDIENLTTIFRTRRGVVRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRLIDYPGE 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
I GKII+ G +LL L + EMR+IRG +I M+FQDP+TSL+P+ I DQ+ E H
Sbjct: 63 ISGGKIIFDGVDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIGDQISETIMEHMDV 122
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
++L+ V + PE RV SYP +LSGG RQRVMIAM +S P LLIADEPTT
Sbjct: 123 TKKEAWQMAREMLEKVGL-QPE-RVDSYPHQLSGGQRQRVMIAMAISLNPKLLIADEPTT 180
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDV +Q +IM+L+ +++ + +++LITH+ + AE +DR+ VMYAG +VE+ E++
Sbjct: 181 ALDVIVQEKIMDLLEDMKRE-GRAVMLITHDFALAAERSDRIAVMYAGWLVELGKAEKLT 239
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
+ PLHPYT+GL++++P ++E++ +PG P+L+NPP+GCRF PRC +A + C KE P
Sbjct: 240 NEPLHPYTKGLIQSVP-DVWMDKEIKPLPGFPPDLINPPEGCRFRPRCSEASKRCMKEPP 298
Query: 305 KLIEVEKEHYVACHLYG 321
+ EV+ V C LYG
Sbjct: 299 E-FEVD-GRVVKCWLYG 313
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 280 bits (708), Expect = 2e-74
Identities = 141/314 (44%), Positives = 204/314 (64%), Gaps = 1/314 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR-NA 64
L+ ++ L + F + +A+D +S+ +++GE++ ++GE+G GKSV++ AIM L+
Sbjct: 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGR 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
++ K+ + G++L + E+E R + G E+AMIFQDP+TSLNP +T+ Q+ E KVH+
Sbjct: 63 VMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGG 122
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+ + LL V IPDP R+ YP +LSGGM QRVMIAM ++ +P LLIADEPTT
Sbjct: 123 NKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDVTIQAQI+ L+LEL++K +++LITH+ +VAE A +++VMYAGQVVE IF
Sbjct: 183 ALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIF 242
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
P HPYTQ LLRALP + + L ++PG VP + P GC +PRC A + C E+P
Sbjct: 243 HAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEP 302
Query: 305 KLIEVEKEHYVACH 318
L + CH
Sbjct: 303 ALNMLADGRQSKCH 316
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 277 bits (700), Expect = 2e-73
Identities = 139/307 (45%), Positives = 209/307 (67%), Gaps = 5/307 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PRNA 64
++ I++L + + T G+V+A+DGVS + KGE ++++GE+G GKS A +I RL+ P
Sbjct: 7 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 66
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
IV G+I+Y G +LL L E+R+ RG+EI M+FQDP L+P T+ Q+ E H L
Sbjct: 67 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLA 126
Query: 125 VVGSILDEIV-KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
GS + + L++V IP R YP +LSGG RQRV IA ++ +P +LIADEPT
Sbjct: 127 SSGSEAESMAGDALELVGIP--RDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 184
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDV +QA+IM+LM +L+E+ +++L+TH+ G+ AE +DR+ VMYAG++VEI P E++
Sbjct: 185 TALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 244
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
NP+HPYT+ L++++P + +RE++ IPG P+L NPP GCRFHPRC + +C+ +
Sbjct: 245 VSNPIHPYTEMLIKSVPDPWE-DREVKPIPGSPPDLRNPPPGCRFHPRCPLRQPLCTNTR 303
Query: 304 PKLIEVE 310
P L V+
Sbjct: 304 PSLRMVD 310
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 276 bits (698), Expect = 3e-73
Identities = 143/321 (44%), Positives = 209/321 (64%), Gaps = 4/321 (1%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
+ L+ +E+L F T RG+VKA+DGVSF +R+GE+L + GE+G GKS A +I+ L+P
Sbjct: 3 QELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPP 62
Query: 63 NAIVKGKIIYKGRNLLELPEREMR-KIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
IV G+I+ G ++ + E E+R K+R K+++M+FQ + L PV+T+ Q+ E+ ++H
Sbjct: 63 GRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIH 122
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ + +LL+ V + YP ELSGG +QRV+IAM L+ +P ++IADE
Sbjct: 123 RGVGRHEARQRVYELLESVGLH--RSIADRYPHELSGGQKQRVVIAMALALEPDIVIADE 180
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDV +QAQI+NL+ +L + SI+LITH+ V+AE+A+ V++MY G++ E P +
Sbjct: 181 PTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSD 240
Query: 242 EIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
+F P HPYTQ LL+A+P+ L IPG P+L NPP GCRFHPRC KA + CS+
Sbjct: 241 AVFTKPQHPYTQALLKAIPKLRGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSR 300
Query: 302 EKPKLIEVEKEHYVACHLYGG 322
E+P L V H AC L G
Sbjct: 301 EEPPLFRVGDGHLSACWLNEG 321
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 275 bits (695), Expect = 6e-73
Identities = 141/325 (43%), Positives = 212/325 (64%), Gaps = 7/325 (2%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ +++I NL + + T VK + V+ D+ KGEI+ ++GE+G GKS AI R+L
Sbjct: 1 MNNMVVLQIRNLNVYYNTLISWVKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRIL 60
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
P NA ++G II G NL +L + E++K RG + MIFQ+PL SLNPV + Q+ E K+
Sbjct: 61 PPNARIQGDIIVDGVNLAKLKDSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVKI 120
Query: 121 H-----KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
K S++ +++++LK +++PDP + YP +LSGG QR++I+M L KP
Sbjct: 121 RYQREGKKAEEESLMRDVIEVLKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMALLLKPK 180
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
LLIADEPT+ALDVTIQAQ++NL +L ++ TSIL ITH+ + ++DR+VVMYAG+++
Sbjct: 181 LLIADEPTSALDVTIQAQVVNLFKQLNKEINTSILFITHDISLAYVVSDRIVVMYAGRIM 240
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKA 295
E VEE+ +P+HPYTQGL+ ++P G K ++ L IPG P+ P GC+F RC K
Sbjct: 241 EDGKVEEVLKSPMHPYTQGLVASIPSGDKNQK-LTAIPGNPPSFFALPTGCKFSNRCSKV 299
Query: 296 KEMCSKEKPKLIEVEKEHYVACHLY 320
++C K++P +IE + + C LY
Sbjct: 300 FDICRKKEPSIIE-KNGRKIRCWLY 323
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 273 bits (691), Expect = 2e-72
Identities = 148/322 (45%), Positives = 200/322 (61%), Gaps = 2/322 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ P+++IE+L I R + +SF I +G+ LA+IGE+G GKSV+A AI+RLL
Sbjct: 1 MASNPILQIEDLSITLAKQRQQYPIVQSLSFTINEGQTLAIIGESGSGKSVSAHAILRLL 60
Query: 61 PRNAI-VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P V G++ ++G NLL +KI G EI+MIFQ+P SLNPVFTIE Q E+
Sbjct: 61 PCPPFSVSGQVNFQGHNLLTASRSIQKKIIGTEISMIFQNPQASLNPVFTIEQQFREIIH 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
H ++++ L+ DP + YP +LSGGM QR+ IAM L P LLIA
Sbjct: 121 THLALTAEVAKEKMLYALEETGFHDPRLCLNLYPHQLSGGMLQRICIAMALLCSPKLLIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDV++Q QI+ L+ L++K S+L+ITHN GVVAE AD V+V+YAG++VE AP
Sbjct: 181 DEPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHNMGVVAETADDVLVLYAGRMVECAP 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELEN-IPGRVPNLLNPPKGCRFHPRCKKAKEM 298
++F NP HPYT+ LL + P + N IPG+ P+ P GCR+HPRC K
Sbjct: 241 AVQMFHNPSHPYTRDLLASRPSLQPQQLGSFNPIPGQPPHYTAFPSGCRYHPRCSKILNR 300
Query: 299 CSKEKPKLIEVEKEHYVACHLY 320
CS E P++ V + H V C LY
Sbjct: 301 CSAEAPEIYPVREGHKVRCWLY 322
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 273 bits (690), Expect = 2e-72
Identities = 139/321 (43%), Positives = 211/321 (65%), Gaps = 2/321 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M +PL++++NL + +R A+D +SFD+ G+ LA+IGE+G GKS+TA+++M+LL
Sbjct: 1 MCAQPLLQVKNLSVSLNRNRVSFLAVDSLSFDVFPGQTLAIIGESGSGKSITAQSLMQLL 60
Query: 61 PR-NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P N + G+ ++ NLL+ + + G +I+MIFQ+PL S +PVFTIE Q E+ +
Sbjct: 61 PEENFSLSGEALFNKENLLDRKNTNAKVLFGSKISMIFQNPLASFDPVFTIEQQFHEVIR 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
H ++++ +L+ DPE+ +K YP ELSGGM QR+ IAM L P LLIA
Sbjct: 121 THLGISNKMAHEQMLAVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDV++Q QI+ L+ L++K S+L+ITH+ GVVAEMAD V V+YAG++ E +
Sbjct: 181 DEPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHDMGVVAEMADDVFVLYAGRMAEYSS 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMC 299
V+EIF +P HPYT+ LL + P ++ ++ I G+ P+ + PKGC + PRC+KA+ +C
Sbjct: 241 VQEIFHSPAHPYTEDLLASRPSQYR-QQTFVPIAGQPPHYTSLPKGCCYSPRCRKAQPIC 299
Query: 300 SKEKPKLIEVEKEHYVACHLY 320
++ P + + H V C LY
Sbjct: 300 FEKSPDSLSLNDHHRVRCWLY 320
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 271 bits (685), Expect = 9e-72
Identities = 142/284 (50%), Positives = 194/284 (68%), Gaps = 11/284 (3%)
Query: 42 IGETGCGKSVTAKAIMRLLPRNAIV-KGKIIYK-----GRNLLELPEREMRKIRGKEIAM 95
+GE+GCGKS A++I R+LP NA++ KG II +L+ L E E+ KIRGK ++M
Sbjct: 1 MGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSM 60
Query: 96 IFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFE 155
IFQDP +L+PV ++ Q+ + K V I EI+K L M P P ++ YP E
Sbjct: 61 IFQDPSAALSPVHKVKKQVTDHVSGEKRRVE-KIAQEILKKLMM---PAPHMILEKYPHE 116
Query: 156 LSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHN 215
LSGGM+QR++IA L +P ++IADEPTTALDVT+QAQI+ ++ LRE+ ET+I+LITHN
Sbjct: 117 LSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHN 176
Query: 216 PGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGR 275
V AE+ADR+ VMYAG VVE+A V +F+ PLHPYT+GLL+++P+ H + E+E I G
Sbjct: 177 LAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPH-VDEEIEPIRGE 235
Query: 276 VPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHL 319
P+L +PP GCRFHPRC ++C + KP+L E VACHL
Sbjct: 236 PPSLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 279
>pir||E83082 probable ATP-binding component of ABC transporter PA4505 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950745|gb|AAG07893.1|AE004864_5 (AE004864) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 324
Score = 270 bits (684), Expect = 1e-71
Identities = 146/314 (46%), Positives = 207/314 (65%), Gaps = 5/314 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ I+NL + F D V +DG+ + KGE+LA++GE+G GKSVT A+M L+
Sbjct: 3 LLDIKNLSVRF-GDTTAVPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGW 61
Query: 66 VKGKII-YKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
V + + G ++L L R+ R+I GK++AM+FQDP+T+LNP +T+ Q+ E+ ++H L
Sbjct: 62 VSADHLRFDGHDMLTLKGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLRLH-LG 120
Query: 125 VVGSILDE-IVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ G L + ++LL+ V+IP R+ +YP +LSGGM QRV IAM ++A+P LLIADEPT
Sbjct: 121 LRGKALRQRALELLERVEIPAAASRLDAYPHQLSGGMSQRVAIAMAIAAEPKLLIADEPT 180
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQIM L+L L+ + +++LITH+ VVAE A RV VMYAG+ VEI V +
Sbjct: 181 TALDVTIQAQIMELLLNLQRDQDMALILITHDLAVVAETAQRVCVMYAGEAVEIGGVPAL 240
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
FD P HPYT+ L++A+P E L +PG VP + P+GC PRC A+E C +E+
Sbjct: 241 FDRPTHPYTEALIKAIPEHCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQEHCRQER 300
Query: 304 PKLIEVEKEHYVAC 317
P L E + V C
Sbjct: 301 PAL-ETHERGAVRC 313
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 270 bits (684), Expect = 1e-71
Identities = 141/320 (44%), Positives = 206/320 (64%), Gaps = 6/320 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ I++L + + T G K ID ++ DI +GE+++L+GE+ GKS + I R+LP I
Sbjct: 2 LLSIKHLNVWYNTVAGKYKVIDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLPPVGI 61
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
G+++ G ++L+L E+EM KIRG + MIFQ+PL SLNPV IE+Q+ E + +
Sbjct: 62 TSGEVVLDGVDVLKLSEKEMTKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIRNSRM 121
Query: 126 -----VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
E++K L+ +++PDPEK + YP ELSGG QRV+I M L +P LLIAD
Sbjct: 122 NIQMTFEEARKEVIKALESLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKLLIAD 181
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPTTALDVTIQAQ++ L+ +L + +I+ ITH+ G+ ++DR++V YAG+V+E
Sbjct: 182 EPTTALDVTIQAQVVKLLKDLNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVMEQGQT 241
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCS 300
EI NPLHPYT GLL ++P K +L +IPG P+ L+ PKGC+F PRC+ A E C
Sbjct: 242 VEIVKNPLHPYTSGLLASIPSSPKHSGKLYSIPGYPPSYLSLPKGCKFAPRCRFAFERCF 301
Query: 301 KEKPKLIEVEKEHYVACHLY 320
+E+P I+ + + C LY
Sbjct: 302 EEEPSYIK-KDNRLIRCWLY 320
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 269 bits (681), Expect = 3e-71
Identities = 140/321 (43%), Positives = 206/321 (63%), Gaps = 2/321 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MS +PL++++NL + + ++ +SF++ G+ LA+IGE+G GKS+TA+++M+LL
Sbjct: 1 MSAQPLLQVKNLSVSLNRNTVSFPVVEDLSFNVFPGQTLAIIGESGSGKSITAQSLMQLL 60
Query: 61 PRNAI-VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P + G+ NLL+ + + G ++AMIFQ+PL S +PVFTIE Q E+ +
Sbjct: 61 PEEYFSISGEAFLHKENLLDRKNLLSKTLFGSKMAMIFQNPLASFDPVFTIEQQFHEVIR 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
H ++IV +L+ DPE+ +K YP ELSGGM QR+ IAM L P LLIA
Sbjct: 121 THLDLTKKVAHEQIVTVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDV++Q QI+ L+ L++K S+L+ITH+ GVVAEMAD V V+YAG++ E +
Sbjct: 181 DEPTTALDVSVQYQILQLLKTLQKKTGMSLLVITHDMGVVAEMADDVFVLYAGRMAEYSS 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMC 299
V++IF +P HPYT+ LL + P +K ++ I G P+ N PKGC + PRC+KA +C
Sbjct: 241 VQDIFHSPAHPYTKDLLASRPSQYK-KQTFVPISGHPPHYTNLPKGCCYSPRCQKALPIC 299
Query: 300 SKEKPKLIEVEKEHYVACHLY 320
K+ P I + H+V C LY
Sbjct: 300 YKQSPHAISLNDHHHVRCWLY 320
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 269 bits (680), Expect = 4e-71
Identities = 144/328 (43%), Positives = 213/328 (64%), Gaps = 18/328 (5%)
Query: 4 EPLVKIENLYIDF-----ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
EP++K+ENL F + G VKA+DGVSF+I KGE L+GE+GCGK+ T + I+R
Sbjct: 6 EPVLKVENLKKYFPVRGLLRTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTGRTILR 65
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
L+ G+II+ G+++ +L E++ R K M FQDP +SL+P T+ + E
Sbjct: 66 LIEPT---DGRIIFMGKDVTKLKGNELKWFRRKAQIM-FQDPYSSLDPRQTVFQIIMEPV 121
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ H + V + ++KLL+ V + E + YP E SGG RQR+ +A +L+ KP ++
Sbjct: 122 RFHGIQV-DDPEEFVIKLLESVGLN--EMHLYRYPHEFSGGQRQRIALARLLALKPEFIV 178
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT+ALDV++QA I+N + EL+EK + L I+H+ GVV M+DR+ VMY G++VE+
Sbjct: 179 LDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVG 238
Query: 239 PVEEIFDNPLHPYTQGLLRALP-----RGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
P +++F+NPLHPYTQ L A+P + +++ + G P+ +NPPKGCRFHPRC
Sbjct: 239 PADKVFENPLHPYTQMLFSAIPIPDPDIAREMKKKRMKVTGEPPSPVNPPKGCRFHPRCP 298
Query: 294 KAKE-MCSKEKPKLIEVEKEHYVACHLY 320
AK +C K++P L+EVEK+HYVAC LY
Sbjct: 299 YAKAGLCDKKEPPLVEVEKDHYVACWLY 326
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 268 bits (678), Expect = 6e-71
Identities = 144/328 (43%), Positives = 211/328 (63%), Gaps = 18/328 (5%)
Query: 4 EPLVKIENLYIDF-----ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
E ++K+ENL F G VKA+DGVSF+I++GE L+GE+GCGK+ T + I+R
Sbjct: 3 ETVLKVENLKKYFPIRGLFRTIGWVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTILR 62
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
L+ GKII+ G+++ +L E++ R K M FQDP +SL+P T+ + E
Sbjct: 63 LIEPT---DGKIIFMGKDVTKLKGEELKWFRRKAQIM-FQDPYSSLDPRQTVFQIIMEPV 118
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
K H + V + +++LL+ V + E + YP E SGG RQR+ +A +L+ KP ++
Sbjct: 119 KFHGIQV-DDPEEFVIRLLESVGLN--EMHLYRYPHEFSGGQRQRIALARLLALKPEFIV 175
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT+ALDV++QA I+N + EL+EK + L I+H+ GVV M+DR+ VMY G++VE+
Sbjct: 176 LDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVG 235
Query: 239 PVEEIFDNPLHPYTQGLLRALP-----RGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
P + IF+NPLHPYTQ L A+P + +++ + G P+ +NPPKGCRFHPRC
Sbjct: 236 PADRIFENPLHPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGCRFHPRCP 295
Query: 294 KAKE-MCSKEKPKLIEVEKEHYVACHLY 320
AK +C KE+P ++EVEK+HYVAC LY
Sbjct: 296 YAKAGLCDKEEPPMVEVEKDHYVACWLY 323
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 266 bits (673), Expect = 2e-70
Identities = 146/322 (45%), Positives = 208/322 (64%), Gaps = 8/322 (2%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M L+++ NL + F T RG+VKA+DGV+ + KGEI+ L GE+G GKS AIMRL+
Sbjct: 1 MRDRMLLEVRNLKVYFYTKRGIVKAVDGVNLYLDKGEIVGLAGESGSGKSTIGYAIMRLV 60
Query: 61 P-RNAIVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
P I G+I++KG N+L+L E RK R K+IAM+FQ ++ PVF I+DQ+ E+
Sbjct: 61 PFPGKIESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIKDQIIEVL 120
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
++H G + I +L KMV + DP+ K YP ELSGG +QR IAM L+ P +LI
Sbjct: 121 RIHGWN--GDYEERIKELFKMVNM-DPQLAEK-YPHELSGGQKQRAFIAMALALNPEVLI 176
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDV +Q I+NL+ +LR++ SI+ ITH+ +++E++DR +YAG+V+E
Sbjct: 177 ADEPTTALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYAGKVMESG 236
Query: 239 PVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEM 298
P E IF P HPYT L+ ++ K ++ IPG +P+L +PP GCRF+ RC A+++
Sbjct: 237 PSEVIFKKPRHPYTSLLIESIATLDKD--IIKGIPGAMPDLSSPPLGCRFNTRCPFARDI 294
Query: 299 CSKEKPKLIEVEKEHYVACHLY 320
C KE+PK+ VAC LY
Sbjct: 295 CFKEEPKMKTFSDGDEVACWLY 316
>sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV1281C
>gi|7445626|pir||A70756 probable ABC-type peptide
transport protein - Mycobacterium tuberculosis (strain
H37RV) >gi|1480305|emb|CAB00901.1| (Z77137) oppD
[Mycobacterium tuberculosis]
Length = 612
Score = 266 bits (672), Expect = 3e-70
Identities = 139/316 (43%), Positives = 206/316 (64%), Gaps = 4/316 (1%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA 64
PL+++ +L + F TD V A+ G+S+ + GE++A++GE+G GKS A A++ LLP A
Sbjct: 3 PLLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYA 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
V+G + +G LL L + M + RGK I +FQDP+++L PV+T+ DQ+ E +VH+ P
Sbjct: 63 QVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQ-P 121
Query: 125 VVG--SILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
VG + V+LL +V I P++R +++P ELSGG RQRV+IA+ ++ P LLI DEP
Sbjct: 122 RVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
TTALDVT+QAQI++++ R+ +L+ITH+ GVVAE ADR +VMYAG+VVE A V +
Sbjct: 182 TTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVND 241
Query: 243 IFDNPLHPYTQGLLRALPRGHKTE-RELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
++ + PYT GLL ++PR + L IPG P+L GC F PRC + C
Sbjct: 242 LYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLT 301
Query: 302 EKPKLIEVEKEHYVAC 317
+P+L++V +H AC
Sbjct: 302 AEPELLDVATDHRAAC 317
Score = 164 bits (412), Expect = 1e-39
Identities = 96/247 (38%), Positives = 145/247 (57%), Gaps = 7/247 (2%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLEL 80
G V+A+DG+S ++R+G L ++GE+G GKS T I+ L A G I G ++ L
Sbjct: 372 GEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELA---APQSGSIEVLGTDVATL 428
Query: 81 PEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMV 140
E R +R ++I ++FQDP+ SL+P + D + E + + + +LL +V
Sbjct: 429 GTAERRSLR-RDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGK-NETHARVAELLDIV 486
Query: 141 KIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLE 200
+ + YP E SGG +QR+ IA L+ +P +L DEP +ALDV+IQA I+NL+L+
Sbjct: 487 GLRHGD--ASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINLLLD 544
Query: 201 LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP 260
L+E+F S L ++H+ VV +A +V VM AG VVE EE+F NP H YT+ LL A+P
Sbjct: 545 LQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRLLGAVP 604
Query: 261 RGHKTER 267
+ R
Sbjct: 605 QPDPARR 611
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 266 bits (672), Expect = 3e-70
Identities = 138/320 (43%), Positives = 205/320 (63%), Gaps = 5/320 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+++ NL I + T RG VKA+DGVSF+++KGE+ + GE+GCGKS +++ P
Sbjct: 3 LLRVRNLRIYYSTPRGFVKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSLILRKPPMTH 62
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
GK I+KG++L++L E RKI+ KE+++I Q + +LNP I+D + ++ + H +
Sbjct: 63 KGGKAIFKGKDLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIVWDLAREHGMQD 122
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
+ + + L MVK+ K + YP ELSGGMRQR + + P LLIADE T+A
Sbjct: 123 KKEVEKLLKERLSMVKL--SPKVAEMYPVELSGGMRQRATMVVSTLLNPDLLIADEVTSA 180
Query: 186 LDVTIQAQIMNLMLE-LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
LDVT Q ++ L+ + E SI+ +TH+ ++ ++ADRV++MYAG+VVEI +EE+
Sbjct: 181 LDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVVEIGSMEEVL 240
Query: 245 DNPLHPYTQGLLRALPR--GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
++P HPYTQ LL +LPR H L IPG +LLNPP+GCRF+ RC A ++C +
Sbjct: 241 ESPAHPYTQLLLNSLPRMGVHYKRERLRGIPGYPISLLNPPEGCRFYTRCPYAMQVCREV 300
Query: 303 KPKLIEVEKEHYVACHLYGG 322
+P+L+EV HY ACHL GG
Sbjct: 301 EPELVEVSPGHYAACHLLGG 320
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 266 bits (672), Expect = 3e-70
Identities = 145/334 (43%), Positives = 206/334 (61%), Gaps = 19/334 (5%)
Query: 4 EPLVKIENLYIDFITDRGV-----------VKAIDGVSFDIRKGEILALIGETGCGKSVT 52
EP++K+ENL F RG VKA+DGVSF+I K ++ AL+GE+GCGK+ T
Sbjct: 3 EPILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKTTT 62
Query: 53 AKAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIED 112
K I++LL GKI +G+++ EL +E K +++ MIFQDP +S+NP F I D
Sbjct: 63 GKLIVKLLEPT---DGKIYLEGQDVTELRTKEEIKAYRRKVQMIFQDPFSSMNPRFRIYD 119
Query: 113 QMGEMFKVHKLPVVGSILDEIV-KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLS 171
+ E +H + + +E++ K L+MVKI PE+ V +P LSGG RQRV IA L
Sbjct: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
Query: 172 AKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYA 231
P+ ++ADEP + LDV+I+A+I+ LM EL+EK + L ITH+ AD + VMY
Sbjct: 180 LNPTFVVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
Query: 232 GQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELEN---IPGRVPNLLNPPKGCRF 288
G++VE+ P +EI DNPLHPYT+ LL A+P +++ I G VP+ +N P GCRF
Sbjct: 240 GRIVEMGPAKEIIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPSGCRF 299
Query: 289 HPRCKKAKE-MCSKEKPKLIEVEKEHYVACHLYG 321
HPRC K+ +C ++P+LIE H+V CH G
Sbjct: 300 HPRCIYFKKGLCDVKQPQLIEYSHNHWVECHRVG 333
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 265 bits (669), Expect = 7e-70
Identities = 139/320 (43%), Positives = 196/320 (60%), Gaps = 2/320 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ PL+ ++NL + F T RG V A +GVS I GE L ++GE+G GKSV +A++ LL
Sbjct: 1 MTTSPLLSVDNLNVTFSTPRGNVVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLL 60
Query: 61 PRN--AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
P I ++++ GRN+L L EMR +RG+EI+M+FQ+P++SLNPV+ I DQ+ E
Sbjct: 61 PSPPATIRADRLVFAGRNMLSLTAAEMRAVRGQEISMVFQNPMSSLNPVWPIGDQISEGL 120
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+VH+ + L+ V IP PE RV YP + SGGM QR +IAM + +P LL+
Sbjct: 121 RVHRGIGNAQARSAAIAALRRVGIPSPEIRVDDYPHQWSGGMAQRAVIAMAMIGEPKLLL 180
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDVTIQ QI++L+++L+ + +I+L++H+ V++E D V VMYAG VVE
Sbjct: 181 ADEPTTALDVTIQDQILSLLMQLQRETGMAIVLVSHDMSVISETCDNVAVMYAGGVVETG 240
Query: 239 PVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEM 298
+IF P HPYT GLL ++P +L +IPG+ P+L GC F RC A
Sbjct: 241 RTTDIFRTPSHPYTAGLLNSIPPIKGRADKLASIPGQPPDLARLGPGCPFFERCSVASAE 300
Query: 299 CSKEKPKLIEVEKEHYVACH 318
C L + ACH
Sbjct: 301 CQTRPVALKRLASGQQTACH 320
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 264 bits (668), Expect = 9e-70
Identities = 140/303 (46%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PRNAIVKGKIIYKGRNLLE 79
G V+A+D VSFDI++GE LAL+GE+GCGK+ TAK+I+R + P + V + K N+ +
Sbjct: 25 GYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKSILRAIDPTDGDVILHLDGKDVNIAK 84
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKM 139
L E++ R + + MIFQ+P TSLNP +++ +GE V+ + + D + +LLK
Sbjct: 85 LSRDELKPYR-RYMQMIFQNPYTSLNPRMKVKEIVGEPLLVNGIAKGKELEDRVAELLKA 143
Query: 140 VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLML 199
V + PE ++ YP SGG RQR++IA ++ +P L++ DEPT+ALDV+I+AQI+NL++
Sbjct: 144 VGLR-PEYMIR-YPHAFSGGQRQRIVIARAIALRPKLVVCDEPTSALDVSIRAQILNLLM 201
Query: 200 ELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRAL 259
+L+E+F + L ITH+ VV ++DRV VMY G++VE++ EEIF+NP HPYT+ LLR++
Sbjct: 202 DLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKIVELSSTEEIFENPKHPYTETLLRSV 261
Query: 260 PRGHKTER-ELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKE---HYV 315
P+ R EL I G VPN NPP GC FHPRC AK +C +E P+ + E HYV
Sbjct: 262 PKPDPDLREELVPIEGEVPNPANPPSGCYFHPRCPYAKSICKEEYPEFRNLGTEDNPHYV 321
Query: 316 ACH 318
ACH
Sbjct: 322 ACH 324
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 264 bits (667), Expect = 1e-69
Identities = 139/320 (43%), Positives = 203/320 (63%), Gaps = 5/320 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ + NL + + T G V+A+DGVSF++ +GE+ + GE+GCGKS +++ P
Sbjct: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
G I+KGR+L+ LP E+RKI+ E+++I Q + +LNP I+D + ++ + H
Sbjct: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
+ + + + L MVK+ + YP ELSGGMRQR + + P LLIADE T+A
Sbjct: 123 RREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
Query: 186 LDVTIQAQIMNLMLE-LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
LDVT Q ++ L+ ++E SI+ +TH+ ++ ++ADRV+VMYAG+VVEI P+EE+
Sbjct: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
Query: 245 DNPLHPYTQGLLRALPR--GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
+NP HPYTQ LL +LPR H L IPG +LLNPP+GCRF+ RC A E C +
Sbjct: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCPFAMEHCPEV 300
Query: 303 KPKLIEVEKEHYVACHLYGG 322
+PKL++V KEHY ACHL GG
Sbjct: 301 EPKLVKVGKEHYAACHLLGG 320
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 263 bits (666), Expect = 2e-69
Identities = 140/334 (41%), Positives = 205/334 (60%), Gaps = 19/334 (5%)
Query: 4 EPLVKIENLYIDFITDRGV-----------VKAIDGVSFDIRKGEILALIGETGCGKSVT 52
EP++K+ENL F RG V+A+DG+SF++ K ++ AL+GE+GCGK+ T
Sbjct: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
Query: 53 AKAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIED 112
K +++LL GKI +G+++ +L +E K + + MIFQDP +S+NP F I D
Sbjct: 63 GKLVVKLLEPT---DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYD 119
Query: 113 QMGEMFKVHKLPVVGSILDEIV-KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLS 171
+ E +H + + +E++ K L+MVKI PE+ V +P LSGG RQRV IA L
Sbjct: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
Query: 172 AKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYA 231
P+ ++ADEP + LDV+I+A+I+ LM EL+EK + L ITH+ AD + VMY
Sbjct: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
Query: 232 GQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELEN---IPGRVPNLLNPPKGCRF 288
G++VE+ P +E+ DNPLHPYT+ LL A+P +++ I G VP+ +N P GCRF
Sbjct: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
Query: 289 HPRCKKAKE-MCSKEKPKLIEVEKEHYVACHLYG 321
HPRC K+ +C ++PKLIE H+V CH G
Sbjct: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 263 bits (665), Expect = 2e-69
Identities = 141/316 (44%), Positives = 204/316 (63%), Gaps = 7/316 (2%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA- 64
+++IE L + + T G V A+ VSF ++KG I+ +IGE+G GKS I+R LP NA
Sbjct: 4 ILEIEGLTVKYKTRYGTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPENAR 63
Query: 65 IVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF-KVHK 122
I GKI+++G +LLE+ E R+ R K+I+MIFQ+ + + +PV I+DQ+ ++ K
Sbjct: 64 IESGKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQLLDVARKCFP 123
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+L+ I + L++ I E +K YP ELSGG RQRV I M L A P ++IADEP
Sbjct: 124 NKSRNELLEIIKEKLRIANID--ESVLKKYPHELSGGQRQRVAIGMALLADPEIVIADEP 181
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
TT LDV Q QI+N + E+++ ++LLITH+ VVA ++ V+V+YAG+V+E ++
Sbjct: 182 TTGLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEYGDIKR 241
Query: 243 IFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
+F N HPYT LLR+ P K +L IPG P+L NPP GC FHPRC A ++C KE
Sbjct: 242 VFKNSHHPYTYLLLRSYPEMGK--EKLYEIPGSPPDLRNPPSGCVFHPRCPYATDLCRKE 299
Query: 303 KPKLIEVEKEHYVACH 318
+PKL+E+E+ H+ ACH
Sbjct: 300 EPKLVEIEEGHFSACH 315
>pir||D83419 probable ATP-binding component of ABC transporter PA1807 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947791|gb|AAG05196.1|AE004607_2 (AE004607) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 263 bits (664), Expect = 3e-69
Identities = 135/261 (51%), Positives = 189/261 (71%), Gaps = 2/261 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E +++I +L ++F++ + ++GVSFDIR+GE LAL+GE+G GKSVTA +I+RLLP +
Sbjct: 3 ENILEIRDLAVEFLSGEQRQRVVEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYS 62
Query: 64 AIVK--GKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
G I Y+G +LL+LPER +R IRG IAM+FQ+P+TSLNP+ TIE Q+ E+ +H
Sbjct: 63 VASHPAGSIHYQGEDLLKLPERRLRGIRGNRIAMVFQEPMTSLNPLHTIEKQLAEVLALH 122
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
K I++LL++V IP+P KR+K+YP ELSGG RQRVMIAM L+ +P LLIADE
Sbjct: 123 KGLGGAKASARILELLELVGIPEPAKRLKAYPHELSGGQRQRVMIAMALACEPQLLIADE 182
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVT+Q +I++L+ +L+ + S+LLITH+ +V +A RV VM G++VE A +
Sbjct: 183 PTTALDVTVQLKILDLLKDLQARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVEQASCQ 242
Query: 242 EIFDNPLHPYTQGLLRALPRG 262
E+F P HPYT+ LL A P G
Sbjct: 243 ELFAAPRHPYTRELLNAEPSG 263
Score = 176 bits (443), Expect = 2e-43
Identities = 100/263 (38%), Positives = 163/263 (61%), Gaps = 14/263 (5%)
Query: 3 GEPLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
GE L+ +++L + F +GV VKA+DGV+F++ +G+ L ++GE+G GKS A
Sbjct: 271 GETLLAVDDLRVWFPIRKGVFRRTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTLGLA 330
Query: 56 IMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG 115
I+RLL +G I ++G L L + ++R +R +E+ ++FQDP SL+P + + +G
Sbjct: 331 ILRLLES----QGGIRFEGTRLDGLAQHDVRPLR-REMQVVFQDPYGSLSPRMCVGEIVG 385
Query: 116 EMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
E ++H++ I+ L V + DP+ R + YP E SGG RQR+ IA L KP+
Sbjct: 386 EGLRIHRIGSEAEQEQAIIDALVEVGL-DPQTRYR-YPHEFSGGQRQRIAIARALVLKPA 443
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
L++ DEPT+ALD T+Q Q++ L+ +L+ K+ + L I+H+ VV ++ +++V+ G+VV
Sbjct: 444 LILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHGKVV 503
Query: 236 EIAPVEEIFDNPLHPYTQGLLRA 258
E E +F +P HPYTQ LL A
Sbjct: 504 EQGSAEAVFASPQHPYTQQLLEA 526
>pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei
>gi|1491738|emb|CAA62801.1| (X91502) ABC transporter
[Methanosarcina mazei]
Length = 317
Score = 262 bits (662), Expect = 5e-69
Identities = 143/317 (45%), Positives = 199/317 (62%), Gaps = 7/317 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ L++++NL + F+ + V A+ G+SF I + E LAL+GETGCGKSV A AIMRLLP
Sbjct: 7 DKLLEVKNLQVSFLGIK-TVTALSGISFSIGERETLALVGETGCGKSVAAHAIMRLLPPE 65
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+ VKG + +GRNLL L E+EM +IRGKEI +IFQ+P +LNPV++I Q+ E ++H+
Sbjct: 66 SGVKGTVELRGRNLLGLSEKEMTEIRGKEIGIIFQNPSLALNPVYSIGHQLAEPLRLHRK 125
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
L + LK + + + + YP SGGM QR +IA P+LLIADEP
Sbjct: 126 EKKKKALSRAAEALKNMGFANTGEIINYYPSWCSGGMNQRFLIAASTILDPALLIADEPG 185
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
LD + +++ + L+E+ +T++LLI+H+ G V +ADRV VMYAG++VEIA I
Sbjct: 186 KGLDRSCLSELEAGLKRLKEEKKTALLLISHDLGFVRNLADRVAVMYAGEIVEIADSSGI 245
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F+ PLHPYT+GLL +LP E+ IPG P L P GCRFHPRC K C + +
Sbjct: 246 FEEPLHPYTKGLLNSLP-----EKGFIPIPGFSPPLSRLPSGCRFHPRCPLRKRCCIENQ 300
Query: 304 PKLIEVEKEHYVACHLY 320
P++IE V C LY
Sbjct: 301 PEIIET-NGRAVRCFLY 316
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 262 bits (662), Expect = 5e-69
Identities = 131/317 (41%), Positives = 199/317 (62%), Gaps = 3/317 (0%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL-LPRN 63
PL+ I NL +D+ITD G V+A + VSFD+ GE+ L GE+GCGKS A ++MRL P
Sbjct: 4 PLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPA 63
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I G++I+ G ++L+ + M+ R KE++M+FQ + +LNPV T+E+Q ++ H
Sbjct: 64 FITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRHTN 123
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
LL++V I R+ YP + SGGMRQR++IA+ L+ P ++I DEPT
Sbjct: 124 MTREQAKRRAEGLLEIVDIHP--SRLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPT 181
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDV +Q +I+ + L+E+F SIL ITH+ ++ E +DR+ +MY+G+++E+AP ++I
Sbjct: 182 TALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQI 241
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
+ P HPYT+GL + P + +L IPG NLL+ P+GCRF RC + E C+K
Sbjct: 242 LETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVP 301
Query: 304 PKLIEVEKEHYVACHLY 320
L ++E + CHLY
Sbjct: 302 TVLRQIEHGRFSNCHLY 318
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 262 bits (662), Expect = 5e-69
Identities = 137/326 (42%), Positives = 206/326 (63%), Gaps = 14/326 (4%)
Query: 3 GEPLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
G+PL++++NL F + G V+A+D +SF + +GE+L ++GE+GCGKS T KA
Sbjct: 2 GKPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKA 61
Query: 56 IMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG 115
I+RL+ ++ G++ + G + L E +MRK R +++ +IFQDP SLNP TIE +
Sbjct: 62 ILRLIEPSS---GEVYFAGTEITALSEGDMRK-RRRDMQIIFQDPYASLNPRHTIEKIIR 117
Query: 116 EMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
E VH++ L+ + +LL+ V + YP + SGG RQR+ IA L+ P
Sbjct: 118 EPLIVHQIGTKKEQLERVEELLETVGLSSDH--ATRYPHQFSGGQRQRIGIARALAVHPK 175
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
L+I DEP +ALDV++Q+QI+NLM +L+E F + + I H+ VV ++DRV VMY G++V
Sbjct: 176 LVICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMV 235
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALP-RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKK 294
E+A +++F+NP HPYT+ LL A+P +E + G VP+ NPP+GC FH RC
Sbjct: 236 EMATKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPD 295
Query: 295 AKEMCSKEKPKLIEVEKEHYVACHLY 320
++C ++P L E EK HYVACHLY
Sbjct: 296 CMDVCKIKRPSLHEKEKGHYVACHLY 321
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 262 bits (662), Expect = 5e-69
Identities = 136/304 (44%), Positives = 195/304 (63%), Gaps = 10/304 (3%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLEL 80
G VKA+DGVSF ++KGE L ++GE+GCGKS + ++RL +G+I++KG+++ L
Sbjct: 31 GDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIRLYKPT---EGQILFKGQDISNL 87
Query: 81 PEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMV 140
E ++RK K I M+FQDP SLNP T+ + E F H + + +++ +LL V
Sbjct: 88 SEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFNTHNMYTMRERNEKVEELLARV 147
Query: 141 KI-PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLML 199
+ P R YP E SGG RQR+ IA L+ P L+IADEP +ALDV+IQ Q++NLM
Sbjct: 148 GLHPSFAGR---YPHEFSGGQRQRIGIARALTLNPELIIADEPVSALDVSIQPQVINLME 204
Query: 200 ELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRAL 259
EL+E+F + L I+H+ VV ++DRV VMY G+++E+ E++DNPLHPYTQ LL ++
Sbjct: 205 ELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGKHELYDNPLHPYTQALLSSV 264
Query: 260 PRGHK---TERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVA 316
P K +RE + G +P+ NPPKGC FH RC AK +C ++ P+ E H+VA
Sbjct: 265 PVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVAKPICKEQIPEFKEAAPSHFVA 324
Query: 317 CHLY 320
CHLY
Sbjct: 325 CHLY 328
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 261 bits (661), Expect = 6e-69
Identities = 138/320 (43%), Positives = 202/320 (63%), Gaps = 5/320 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ + NL + + T G V+A+DGVSF++ +GE+ + GE+GCGKS +++ P
Sbjct: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
G I+KGR+L+ LP E+RKI+ E+++I Q + +LNP I+D + ++ + H
Sbjct: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
+ + + + L MVK+ + YP ELSGGMRQR + + P LLIADE T+A
Sbjct: 123 RREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
Query: 186 LDVTIQAQIMNLMLE-LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
LDVT Q ++ L+ ++E SI+ +TH+ ++ ++ADRV+VMYAG+VVEI P+EE+
Sbjct: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
Query: 245 DNPLHPYTQGLLRALPR--GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
+NP HPYTQ LL +LPR H L IPG +LLNPPKGCRF+ RC A E C
Sbjct: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
Query: 303 KPKLIEVEKEHYVACHLYGG 322
+PKL++V ++HY ACHL GG
Sbjct: 301 EPKLVKVGRDHYAACHLLGG 320
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 258 bits (652), Expect = 7e-68
Identities = 140/279 (50%), Positives = 197/279 (70%), Gaps = 5/279 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR-NA 64
++++++L F TD+GV KA+DGVSF ++K + L ++GE+G GKS+T+ +I+ L+ +
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGK 61
Query: 65 IVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
IV G I + G++LL+L E++M+K IRGK+I MIFQ+P+TSLNP +T+ Q+ E+ K+H
Sbjct: 62 IVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKIHHP 121
Query: 124 PV-VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ L+ +V L+ V IP + YPF LSGG RQRVMIAM + +P +LIADEP
Sbjct: 122 SLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADEP 181
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
TTALDVTIQAQI+ LM EL++K TSIL ITH+ GVVA++AD VVVMY G VVE A +E
Sbjct: 182 TTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQASAKE 241
Query: 243 IFDNPLHPYTQGLLRALPRGHKTERE--LENIPGRVPNL 279
+F +P HPYT+ LL A+P+ K R+ LE + V L
Sbjct: 242 LFADPRHPYTKALLNAIPKPGKEYRKKRLETVDENVDYL 280
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 257 bits (650), Expect = 1e-67
Identities = 140/279 (50%), Positives = 197/279 (70%), Gaps = 5/279 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR-NA 64
++++++L F TD+GV KA+DGVSF ++K + L ++GE+G GKS+T+ +I+ L+ +
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGQ 61
Query: 65 IVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
IV G I + G++LL+L E++M+K IRGK+I MIFQ+P+TSLNP +T+ Q+ E+ K+H
Sbjct: 62 IVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKIHHP 121
Query: 124 PV-VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ L+ +V L+ V IP + YPF LSGG RQRVMIAM + +P +LIADEP
Sbjct: 122 NLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADEP 181
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
TTALDVTIQAQI+ LM EL++K TSIL ITH+ GVVA++AD VVVMY G VVE A +E
Sbjct: 182 TTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQASAKE 241
Query: 243 IFDNPLHPYTQGLLRALPRGHKTERE--LENIPGRVPNL 279
+F +P HPYT+ LL A+P+ K R+ LE + V L
Sbjct: 242 LFADPRHPYTKALLSAIPKPGKEYRKKRLETVDENVDYL 280
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 256 bits (647), Expect = 3e-67
Identities = 128/301 (42%), Positives = 192/301 (63%), Gaps = 4/301 (1%)
Query: 20 RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLE 79
R VKA+DGV+F I +G+ L L+GE+G GK+ T + I+RL GKII+ GR++ +
Sbjct: 28 RKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGRVILRL---EEPTDGKIIFDGRDITK 84
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKM 139
L + EMRK+R KE+ +IFQDP+ SLNP + + ++H + S + ++++L+
Sbjct: 85 LSKEEMRKLR-KEMQIIFQDPMASLNPYMRVGKAIEHALEIHGIGDRSSRKEMVLEMLRR 143
Query: 140 VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLML 199
V + E + YP ELSGG RQRV+IA L KP L++ADE LDV++++Q++ L+
Sbjct: 144 VNLEPAEDIYRRYPRELSGGQRQRVVIARALILKPRLVVADEAVAMLDVSVRSQLLRLLQ 203
Query: 200 ELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRAL 259
ELR++F ++L ITH+ + D + VMY G++VEI E+I+ NP HPYTQ L+ A+
Sbjct: 204 ELRKEFNLTMLFITHDLATTKYVCDEIAVMYLGKIVEIGDFEDIYLNPKHPYTQALISAV 263
Query: 260 PRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHL 319
P +++ G PN ++ P GCRFHPRC ++C KE+P+L VE+ H VACHL
Sbjct: 264 PEPSLKKKKKFIPEGETPNPIDVPSGCRFHPRCPYRMDICMKEEPQLKAVEENHKVACHL 323
Query: 320 Y 320
Y
Sbjct: 324 Y 324
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 252 bits (636), Expect = 5e-66
Identities = 129/320 (40%), Positives = 209/320 (65%), Gaps = 12/320 (3%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+PL++ +L F + ++KA+DG+S +I++GE L L+GE+GCGKS + I++LL +
Sbjct: 11 KPLLQTVDLKKYFPQGKRILKAVDGISIEIKEGETLGLVGESGCGKSTLGRTILKLLRPD 70
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
GKI ++G+++ L ++EM+ R K++ +IFQDPL SLNP T+ + + +HK+
Sbjct: 71 G---GKIFFEGKDITNLNDKEMKPYR-KKMQIIFQDPLGSLNPQMTVGRIIEDPLIIHKI 126
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ +LL MV I + + S+P E SGG +QR+ IA L+ P ++ DEP
Sbjct: 127 GTKKERRKRVEELLDMVGIG--REFINSFPHEFSGGQQQRIGIARALALNPKFIVCDEPV 184
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
+ALDV+IQAQI++L+ E+++K S L I HN VV ++ +V VMY G++VE V++I
Sbjct: 185 SALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKIVEYGDVDKI 244
Query: 244 FDNPLHPYTQGLLRALPR----GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMC 299
F NP+HPYT+ LL+++P+ G K + ++ G +P+ ++ PKGCRF RC + K +C
Sbjct: 245 FLNPIHPYTRALLKSVPKIPWDGQK--QRFYSLKGELPSPIDLPKGCRFQTRCTEKKAIC 302
Query: 300 SKEKPKLIEVEKEHYVACHL 319
+++P+L EVEK H+V+CHL
Sbjct: 303 FEKEPELTEVEKNHFVSCHL 322
>pir||E70141 oligopeptide transport ATP-binding protein oppD - Lyme disease
spirochete >gi|2281462|gb|AAC46287.1| (AF000366)
oligopeptide permease homolog D [Borrelia burgdorferi]
>gi|2688243|gb|AAC66722.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Borrelia
burgdorferi]
Length = 290
Score = 251 bits (634), Expect = 9e-66
Identities = 129/261 (49%), Positives = 184/261 (70%), Gaps = 2/261 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M E +++I+NL I+F + + V+ +++GEI A++GE+G GKSVT+ AI++LL
Sbjct: 1 MEKENILEIKNLTIEFRLKHTTIHPVSNVNLSVKRGEIRAIVGESGSGKSVTSMAILKLL 60
Query: 61 PRNAIV--KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
P V G+I+++ ++LL+L E+E+ KIRG +I+MIFQDP+TSLNP I Q+ E
Sbjct: 61 PELTTVYKSGEILFENQDLLKLSEKELLKIRGNKISMIFQDPMTSLNPFLRISTQLEETI 120
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+H+ ++ +++LK V + + E+R+K +P + SGGMRQRVMIAM LS PSLLI
Sbjct: 121 ILHQGLGKKEAKEKAIEMLKTVGVVNAEERIKHFPHQFSGGMRQRVMIAMALSCHPSLLI 180
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDVTIQ QI+ L+ L +KF TS + ITH+ VVAE+ D V VMY G++VE
Sbjct: 181 ADEPTTALDVTIQEQILLLIKNLSKKFNTSTIFITHDLAVVAEICDTVSVMYQGKIVEEG 240
Query: 239 PVEEIFDNPLHPYTQGLLRAL 259
VEEIF+NP HPYT GLL+++
Sbjct: 241 TVEEIFNNPKHPYTIGLLKSI 261
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 251 bits (634), Expect = 9e-66
Identities = 133/324 (41%), Positives = 202/324 (62%), Gaps = 17/324 (5%)
Query: 9 IENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKG 68
+ N+ ++F T G+V A+ VSFD+++G L ++GE+G GKS A +IM LLP NA+++G
Sbjct: 1 MRNVSVEFKTYSGIVHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRG 60
Query: 69 KIIYKGRNLL--------------ELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
I KG + ++ E +R IR K I+M+FQ + S NPV+TI QM
Sbjct: 61 SIYLKGTEYISDVIINNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRRQM 120
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
E+FK+H I ++ + L+M + + YP ELSGGM+QR +IAM LS P
Sbjct: 121 FEVFKIHTTLDNDEIEKKVEEALRMAGLNISV--LDMYPHELSGGMKQRAVIAMALSLDP 178
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFET-SILLITHNPGVVAEMADRVVVMYAGQ 233
++IADEPTT LDV QA+I++ + +L+E + S++LI+H+ GVV+++AD V+V+YAG+
Sbjct: 179 DIVIADEPTTGLDVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGK 238
Query: 234 VVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
V E IF N +PYT L+ + P +R +E IPG +P+ + KGC+F RC
Sbjct: 239 VFEYGEKSRIFQNTANPYTYKLIGSYPSIRNAKRYVEGIPGSLPDPMKIGKGCKFADRCY 298
Query: 294 KAKEMCSKEKPKLIEVEKEHYVAC 317
A+++C +E+P+LI+VE HY AC
Sbjct: 299 MARDVCREEEPELIKVEDNHYSAC 322
Score = 198 bits (497), Expect = 1e-49
Identities = 120/321 (37%), Positives = 177/321 (54%), Gaps = 22/321 (6%)
Query: 16 FITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGR 75
F ++ V+A+D ++F IRKGEIL ++GE+G GK+ K ++ L A GKI Y
Sbjct: 370 FEREKRFVRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLYSPTA---GKITYSFS 426
Query: 76 N-----LLELPERE-MRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSI 129
N E E MR KE MIFQDP SLNP T+ D + E +
Sbjct: 427 NGDVEITPTTSESELMRSSIRKETQMIFQDPYDSLNPKLTVYDIVAEPIIARRYHKGNKE 486
Query: 130 LDEIVK----LLKMVKIPDPEKRVKS-------YPFELSGGMRQRVMIAMMLSAKPSLLI 178
D+I K +L +VKI + +K YP ELSGG RQRV A L +I
Sbjct: 487 KDDIYKNPLEILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFII 546
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPT+ LDV+I+A MN+M E+R K +++ I+H+ M+D+++VMY G+ VE+
Sbjct: 547 ADEPTSMLDVSIRASFMNMMKEIRSKEGITMVYISHDIASTYYMSDKILVMYLGKAVEMG 606
Query: 239 PVEEIFDNPLHPYTQGLLRALPRGHKT-ERELENIPGRVPNLLNPPKGCRFHPRCKKAKE 297
+ I + PLHPYT+ L++A+P + +I G + N +N PKGCRF+ RC ++
Sbjct: 607 SADAIINEPLHPYTKALIKAIPTPFSDWDPSKIDIIGEIGNAINVPKGCRFYNRCIYRQD 666
Query: 298 MCSKEKPKLIEVEKEHYVACH 318
+C K+ P ++ ++H+ CH
Sbjct: 667 IC-KDNPPTVKGAEDHWYLCH 686
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 249 bits (630), Expect = 3e-65
Identities = 125/306 (40%), Positives = 193/306 (62%), Gaps = 9/306 (2%)
Query: 16 FITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGR 75
F + V++A+DGV I GE L ++GE+GCGKS + +MRLL +G + + G
Sbjct: 22 FKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMRLLEPT---RGTLSFAGS 78
Query: 76 NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVK 135
+ L L +R+ R +I +IFQDP +SLNP T+ + +GE K H+L ++ + +
Sbjct: 79 DFLALKGEALRQKRS-DIQIIFQDPFSSLNPRMTVREIIGEPLKTHRLAKGNDLIKRVDE 137
Query: 136 LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIM 195
L+ V + K YP E SGG RQR+ IA ++ KP L+I DEP +ALDV+IQAQI+
Sbjct: 138 LMDAVGLD--RSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVSALDVSIQAQIL 195
Query: 196 NLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGL 255
NLM+ L+++F+ + L I H V ++DR+ VMY G+VVE+A + +F P+HPY++GL
Sbjct: 196 NLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALFAQPMHPYSEGL 255
Query: 256 LRALPRGHKT---ERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKE 312
++A+P T +++ + G +P+ ++PP GCRFHPRC A++ C+ ++P L E E
Sbjct: 256 IQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTVQEPALTEKEPG 315
Query: 313 HYVACH 318
H+VACH
Sbjct: 316 HFVACH 321
>emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 356
Score = 249 bits (629), Expect = 3e-65
Identities = 135/311 (43%), Positives = 197/311 (62%), Gaps = 2/311 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA- 64
++ +++ ++F V+ AI VS ++ +GE+LA +GE+G GKSV K +L N
Sbjct: 8 ILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGR 67
Query: 65 IVKGKIIYKGRNLLELP-EREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I G I+Y+G+ L +L +E KIRG +IA IFQDP+TSL+P+ TI Q+ E+ H+
Sbjct: 68 IANGSIVYRGQELTDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQK 127
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ + + V IP+ +KR + YPFE SGGMRQR++IA+ L+ +P +LI DEPT
Sbjct: 128 VSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEYSGGMRQRIVIAIALACRPDILICDEPT 187
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI+ L+ L+ ++ +I+ ITH+ GVVA +AD+V VMYAG++VE VEEI
Sbjct: 188 TALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVEFGTVEEI 247
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F +P HPYT LL +LP+ EL IPG P+L +P G F R + A + ++
Sbjct: 248 FYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKA 307
Query: 304 PKLIEVEKEHY 314
P I V + H+
Sbjct: 308 PPAINVSETHW 318
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 249 bits (629), Expect = 3e-65
Identities = 130/298 (43%), Positives = 188/298 (62%), Gaps = 2/298 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+P++ I+ L++ F G V A++ VS I +GEI+ L+GE+G GKSVTA IMRLLP
Sbjct: 3 QPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTG 62
Query: 64 A--IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ + +G+I G ++L E+++R+ RG +AMIFQ+P+T+LNP I QM ++ + H
Sbjct: 63 SYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHH 122
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ + + LL+ ++IPD + + YPFELSGGMRQRVMIA+ S +P L+IADE
Sbjct: 123 QPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADE 182
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVT+Q Q++ L+ T++L I+H+ VV+++ D V VMYAG V+E
Sbjct: 183 PTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTA 242
Query: 242 EIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMC 299
++ +P HPYT GLL+ P + L IPG VPNL + P GC F RC A C
Sbjct: 243 DVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQC 300
>sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|495177|gb|AAB00533.1| (U09553) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 247 bits (625), Expect = 1e-64
Identities = 140/319 (43%), Positives = 196/319 (60%), Gaps = 5/319 (1%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M E +++ + + + F KAI + +R+GE+LA++GE+G GKS A A+M L
Sbjct: 1 MESENILEAKQVSVAFRIAGKFQKAIYDIDLSLRRGEVLAIVGESGSGKSTLATAVMGLH 60
Query: 61 -PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P + G I+ ++ M IRG ++ MIFQ+PLT+LNP+ I Q+ EM
Sbjct: 61 NPNQTQITGSILLDEEEVIGKTGDSMASIRGSKVGMIFQNPLTALNPLMKIGQQIKEMLA 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
VH + I +LL+ V IP+P++ V +P +LSGGMRQRVMIA+ ++ P L+IA
Sbjct: 121 VHDVYPENQYESRIFQLLEQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDLIIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDVTIQAQI++L+LE+++K ++LITH+ GVVAE+AD V VMYAGQ+VE A
Sbjct: 181 DEPTTALDVTIQAQILDLILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVEKAS 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNL--LNPPKGCRFHPRCKKAKE 297
VEE+F NP HPYT+ LLR+ P +L IPG VP+L + K F R KE
Sbjct: 241 VEELFQNPKHPYTRSLLRSNPSAETVSDDLYVIPGSVPSLSEIEYDKDL-FLARVPWMKE 299
Query: 298 MCSKE-KPKLIEVEKEHYV 315
K K+ E+ H+V
Sbjct: 300 EAQKVISEKMTEISSNHFV 318
>pir||E64820 probable oligopeptide transport protein - Escherichia coli
>gi|1787051|gb|AAC73916.1| (AE000185) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 612
Score = 247 bits (624), Expect = 1e-64
Identities = 127/263 (48%), Positives = 187/263 (70%), Gaps = 7/263 (2%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++ +ENL I F+ D+ + A+ +SF +++GE LA++GE+G GKSVTA A+MRLL +
Sbjct: 1 MLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 60
Query: 66 V----KGKIIYKGRNLLELPER---EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
+ K + + R ++EL E+ +MR +RG ++AMIFQ+P+TSLNPVFT+ +Q+ E
Sbjct: 61 LVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 120
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
++H+ + E ++L V+IP+ + + YP +LSGGMRQRVMIAM LS +P++LI
Sbjct: 121 RLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 180
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDVTIQAQI+ L+ L+++ ++ ITH+ GVVAE+ADRV+VMY G+ VE
Sbjct: 181 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 240
Query: 239 PVEEIFDNPLHPYTQGLLRALPR 261
VE+IF P HPYT+ LL A+P+
Sbjct: 241 TVEQIFHAPQHPYTRALLAAVPQ 263
Score = 190 bits (478), Expect = 2e-47
Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 13/267 (4%)
Query: 1 MSGEPLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTA 53
+ GEP++++ NL F G+ V A++ VSFD+ GE L+L+GE+G GKS T
Sbjct: 297 VDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 356
Query: 54 KAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQ 113
+A++RL+ G+II+ G+ + L +++ +R ++I IFQDP SL+P TI D
Sbjct: 357 RALLRLVESQG---GEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIGDS 412
Query: 114 MGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAK 173
+ E +VH L + LL+ V + PE + YP E SGG RQR+ IA L+
Sbjct: 413 IIEPLRVHGLLPGKDAAARVAWLLERVGLL-PEHAWR-YPHEFSGGQRQRICIARALALN 470
Query: 174 PSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
P ++IADE +ALDV+I+ QI+NL+L+L+ F + L I+H+ VV ++ RV VMY GQ
Sbjct: 471 PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 530
Query: 234 VVEIAPVEEIFDNPLHPYTQGLLRALP 260
+VEI P +F+NP HPYT+ LL A+P
Sbjct: 531 IVEIGPRRAVFENPQHPYTRKLLAAVP 557
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 247 bits (623), Expect = 2e-64
Identities = 127/263 (48%), Positives = 187/263 (70%), Gaps = 7/263 (2%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++ +ENL I F+ D+ + A+ +SF +++GE LA++GE+G GKSVTA A+MRLL +
Sbjct: 48 VLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 107
Query: 66 V----KGKIIYKGRNLLELPER---EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
+ K + + R ++EL E+ +MR +RG ++AMIFQ+P+TSLNPVFT+ +Q+ E
Sbjct: 108 LVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 167
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
++H+ + E ++L V+IP+ + + YP +LSGGMRQRVMIAM LS +P++LI
Sbjct: 168 RLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 227
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDVTIQAQI+ L+ L+++ ++ ITH+ GVVAE+ADRV+VMY G+ VE
Sbjct: 228 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 287
Query: 239 PVEEIFDNPLHPYTQGLLRALPR 261
VE+IF P HPYT+ LL A+P+
Sbjct: 288 TVEQIFHAPQHPYTRALLAAVPQ 310
Score = 190 bits (478), Expect = 2e-47
Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 13/267 (4%)
Query: 1 MSGEPLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTA 53
+ GEP++++ NL F G+ V A++ VSFD+ GE L+L+GE+G GKS T
Sbjct: 344 VDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 403
Query: 54 KAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQ 113
+A++RL+ G+II+ G+ + L +++ +R ++I IFQDP SL+P TI D
Sbjct: 404 RALLRLVESQG---GEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIGDS 459
Query: 114 MGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAK 173
+ E +VH L + LL+ V + PE + YP E SGG RQR+ IA L+
Sbjct: 460 IIEPLRVHGLLPGKDAAARVAWLLERVGLL-PEHAWR-YPHEFSGGQRQRICIARALALN 517
Query: 174 PSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
P ++IADE +ALDV+I+ QI+NL+L+L+ F + L I+H+ VV ++ RV VMY GQ
Sbjct: 518 PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 577
Query: 234 VVEIAPVEEIFDNPLHPYTQGLLRALP 260
+VEI P +F+NP HPYT+ LL A+P
Sbjct: 578 IVEIGPRRAVFENPQHPYTRKLLAAVP 604
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 247 bits (623), Expect = 2e-64
Identities = 127/263 (48%), Positives = 187/263 (70%), Gaps = 7/263 (2%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++ +ENL I F+ D+ + A+ +SF +++GE LA++GE+G GKSVTA A+MRLL +
Sbjct: 18 VLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 77
Query: 66 V----KGKIIYKGRNLLELPER---EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
+ K + + R ++EL E+ +MR +RG ++AMIFQ+P+TSLNPVFT+ +Q+ E
Sbjct: 78 LVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 137
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
++H+ + E ++L V+IP+ + + YP +LSGGMRQRVMIAM LS +P++LI
Sbjct: 138 RLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 197
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDVTIQAQI+ L+ L+++ ++ ITH+ GVVAE+ADRV+VMY G+ VE
Sbjct: 198 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 257
Query: 239 PVEEIFDNPLHPYTQGLLRALPR 261
VE+IF P HPYT+ LL A+P+
Sbjct: 258 TVEQIFHAPQHPYTRALLAAVPQ 280
Score = 190 bits (478), Expect = 2e-47
Identities = 110/267 (41%), Positives = 164/267 (61%), Gaps = 13/267 (4%)
Query: 1 MSGEPLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTA 53
+ GEP++++ NL F G+ V A++ VSFD+ GE L+L+GE+G GKS T
Sbjct: 314 VDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 373
Query: 54 KAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQ 113
+A++RL+ G+II+ G+ + L +++ +R ++I IFQDP SL+P TI D
Sbjct: 374 RALLRLVESQG---GEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIGDS 429
Query: 114 MGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAK 173
+ E +VH L + LL+ V + PE + YP E SGG RQR+ IA L+
Sbjct: 430 IIEPLRVHGLLPGKDAAARVAWLLERVGLL-PEHAWR-YPHEFSGGQRQRICIARALALN 487
Query: 174 PSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
P ++IADE +ALDV+I+ QI+NL+L+L+ F + L I+H+ VV ++ RV VMY GQ
Sbjct: 488 PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 547
Query: 234 VVEIAPVEEIFDNPLHPYTQGLLRALP 260
+VEI P +F+NP HPYT+ LL A+P
Sbjct: 548 IVEIGPRRAVFENPQHPYTRKLLAAVP 574
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 246 bits (621), Expect = 3e-64
Identities = 133/329 (40%), Positives = 206/329 (62%), Gaps = 21/329 (6%)
Query: 3 GEPLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
GE L+K+ L F +G+ V+A+DG+ F++R GE L ++GE+GCGKS +
Sbjct: 36 GETLLKVTGLQKHFPIRKGLLQRQVGAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGRL 95
Query: 56 IMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG 115
I RLL A GK+ ++G+++ L MR +R +++ MIFQDP +SLNP TI +
Sbjct: 96 ITRLLEPTA---GKVEFQGKDITHLGVGGMRPLR-RDVQMIFQDPYSSLNPRHTIGTIVS 151
Query: 116 EMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
FK+ + G + E+ +LL +V + +PE YP E SGG RQR+ IA L+ P
Sbjct: 152 APFKLQGVQPEGGVKKEVQRLLSVVGL-NPE-HYNRYPHEFSGGQRQRIGIARALALNPR 209
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
L++ADEP +ALDV+IQAQ++NL+ +L+++ + ++I H+ VV ++DR+ VMY G+++
Sbjct: 210 LVVADEPVSALDVSIQAQVVNLLDDLQQELGLTYVIIAHDLSVVRHVSDRIAVMYLGKIM 269
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALP------RGHKTERELENIPGRVPNLLNPPKGCRFH 289
E+A + ++ P+HPYT+ L+ A+P RG K+ER L + G VP+ + PP GCRFH
Sbjct: 270 ELADRDLLYKTPMHPYTKALMSAVPIPDPARRGAKSERIL--LKGDVPSPIAPPSGCRFH 327
Query: 290 PRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
RC KA ++C+ +P L E+ VACH
Sbjct: 328 TRCWKATQVCTTTEPPLKELRPGQQVACH 356
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 246 bits (621), Expect = 3e-64
Identities = 123/275 (44%), Positives = 182/275 (65%), Gaps = 2/275 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MS PL+++ NL + F T+ GVV A+ VSFDIR GE LA++GE+G GKSV+ A+M+LL
Sbjct: 1 MSPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLL 60
Query: 61 PRNAIV--KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
P+NA + + I+++G LL + +MR+IRG I MIFQ+P+TSLNP + Q+ E
Sbjct: 61 PKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAI 120
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ H+ +++L ++V +PDP+ + +P E SGG QR+MIAM L +P +LI
Sbjct: 121 RCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILI 180
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPTTALDVT+QA+++ L+ E++ +IL ITH+ GVV +ADRV+VM G VVE
Sbjct: 181 ADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQG 240
Query: 239 PVEEIFDNPLHPYTQGLLRALPRGHKTERELENIP 273
E++F P H YT+ L+ ++P+G K ++ P
Sbjct: 241 STEQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAP 275
Score = 166 bits (415), Expect = 4e-40
Identities = 94/263 (35%), Positives = 158/263 (59%), Gaps = 17/263 (6%)
Query: 5 PLVKIENLYIDFITDRGVV-------KAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM 57
PL+K E++ + F+ + +A+ G+S ++++GE L ++GE+G GKS +A++
Sbjct: 275 PLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALI 334
Query: 58 RLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
LLP G+I +KG++ L E++ ++ K+I M+FQDP SL+P T+ + + E
Sbjct: 335 GLLPST----GQIAFKGQDFRALSEKQRLALK-KDIQMVFQDPYGSLSPRMTVGEIITEG 389
Query: 118 FKVHKLPVVGSI--LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
VH+ P + + + + L+ V++ DP + YP E SGG RQR+ IA L +PS
Sbjct: 390 LLVHQ-PHISKLERMQRARRALEEVRL-DPNS-INRYPHEFSGGQRQRIAIARALILEPS 446
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
++ DEPT+ALD ++Q ++ L+ E++++ L I+H+ VV ++DRV+VM GQV+
Sbjct: 447 FILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVM 506
Query: 236 EIAPVEEIFDNPLHPYTQGLLRA 258
E E IF NP H YT+ L+ A
Sbjct: 507 EQGSAESIFHNPQHEYTKKLIAA 529
>sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075749|pir||A53290 oligopeptide transport protein
oppD - Lactococcus lactis subsp. lactis
>gi|308850|gb|AAA16163.1| (L18760) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 245 bits (618), Expect = 7e-64
Identities = 138/319 (43%), Positives = 195/319 (60%), Gaps = 5/319 (1%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M E +++ + + + F KAI + +++GE+LA++GE+G GKS A A+M L
Sbjct: 1 MESENILEAKQVSVAFRIAGKFQKAIYDIDLSLKRGEVLAIVGESGSGKSTFATAVMGLH 60
Query: 61 -PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P + G I+ ++ M IRG ++ MIFQ+PLT+LNP+ I Q+ EM
Sbjct: 61 NPNQTQITGSILLDDEEVIGKTGDSMASIRGSKVGMIFQNPLTALNPLMKIGQQIKEMLA 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
VH + I +LL+ V IP+P++ V +P +LSGGMRQRVMIA+ ++ P L+IA
Sbjct: 121 VHDVYPENQYESRIFQLLEQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDLIIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDVTIQAQI++L+LE+++K ++LITH+ GVVAE+AD V VMYAGQ+VE
Sbjct: 181 DEPTTALDVTIQAQILDLILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVEKTS 240
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNL--LNPPKGCRFHPRCKKAKE 297
VEE+F NP HPYT+ LLR+ P +L IPG VP+L + K F R KE
Sbjct: 241 VEELFQNPKHPYTRSLLRSNPSAETVSDDLYVIPGSVPSLSKIEYDKDL-FLARVPWMKE 299
Query: 298 MCSKE-KPKLIEVEKEHYV 315
K K+ E+ H+V
Sbjct: 300 EAQKVISEKMTEISSNHFV 318
>sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIE
>gi|98018|pir||S11152 oligopeptide transport protein
amiE - Streptococcus pneumoniae
>gi|47346|emb|CAA35216.1| (X17337) AmiE protein
[Streptococcus pneumoniae]
Length = 355
Score = 244 bits (617), Expect = 9e-64
Identities = 130/311 (41%), Positives = 197/311 (62%), Gaps = 2/311 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA- 64
++ ++ ++F V+ AI GVS ++ +GE+LAL+GE+G GKSV K +L N
Sbjct: 8 ILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFRGMLEENGR 67
Query: 65 IVKGKIIYKGRNLLELPE-REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I +G I Y+G++L L ++ +IRG +IA IFQDP+TSL+P+ TI Q+ E+ H+
Sbjct: 68 IAEGSIDYRGQDLTALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQG 127
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ + + V IPD ++R YPF+ SGGMRQR++IA+ L+ +P +LI DEPT
Sbjct: 128 KTAKEAKELAIDYMNKVGIPDADRRFNEYPFQYSGGMRQRIVIAIALACRPDVLICDEPT 187
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDVTIQAQI++L+ L+ ++ + + ITH+ GVVA +AD+V VMYAG++VE VEE+
Sbjct: 188 TALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVEYGTVEEV 247
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F +P HPYT LL +LP+ + +L +IPG P+L KG F R A ++ ++K
Sbjct: 248 FYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQK 307
Query: 304 PKLIEVEKEHY 314
V + H+
Sbjct: 308 APQFSVSETHW 318
>gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T45539 moaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665715|gb|AAB88475.1| (AF242881) moaD
[Agrobacterium tumefaciens]
Length = 588
Score = 242 bits (612), Expect = 3e-63
Identities = 129/261 (49%), Positives = 179/261 (68%), Gaps = 5/261 (1%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ + ++ ++NL + F G + + +SFDI G LA++GE+G GKSVT+ AIM LL
Sbjct: 1 MTQQSVLSVKNLNVAF----GKKQVVQDLSFDIAPGSTLAVVGESGSGKSVTSLAIMGLL 56
Query: 61 PRN-AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P A G I GR LL L E EM IRG +I+MIFQ+P+TSLNPV + Q+GE +
Sbjct: 57 PVGVAKASGSIQLNGRELLSLSESEMCGIRGGKISMIFQEPMTSLNPVQKVGFQIGEAIR 116
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+H+ + + ++++LK V IPD E+R+ +YP SGGMRQRVMIAM L+ P+L+IA
Sbjct: 117 IHRGLRGKELRNAVLEMLKKVGIPDAERRIDNYPHTFSGGMRQRVMIAMALACNPALIIA 176
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDVT+QAQI+ L+ +L+ + ++L ITH+ GVVAE+ADRV+VM GQVVE P
Sbjct: 177 DEPTTALDVTVQAQILELLKQLQRETNVALLFITHDMGVVAEIADRVLVMRGGQVVESGP 236
Query: 240 VEEIFDNPLHPYTQGLLRALP 260
V+ +F P PYT+ L+ A P
Sbjct: 237 VDSVFTRPESPYTKVLIEAAP 257
Score = 174 bits (437), Expect = 1e-42
Identities = 111/294 (37%), Positives = 165/294 (55%), Gaps = 14/294 (4%)
Query: 5 PLVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM 57
P++++ +L + F G+ V A++ SF I KGE L L+GE+G GKS KAI+
Sbjct: 285 PILEVRDLTVRFPLRGGLLGNVQGNVHAVEKASFAIGKGETLGLVGESGSGKSTIGKAII 344
Query: 58 RLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
L PR G I+ GR + E+ + +R +++ MIFQDP SL+ TI + E
Sbjct: 345 DLAPRFG---GSIVVDGRTIDYADEKSLAVLR-RDVQMIFQDPFGSLDSRQTIGSAIVEP 400
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
VH + + +++ LL+ V + DP R S P E SGG RQR+ IA LS P L+
Sbjct: 401 MYVHGIASGRELREKMEWLLEKVGL-DPA-RASSLPHEFSGGQRQRICIARALSMSPKLI 458
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
IADE +ALDV I+ QI+ LM++L+ +F S L I+H+ V ++ RV VMY G++VEI
Sbjct: 459 IADEAVSALDVAIKGQIIELMMDLQSEFGVSYLFISHDMAAVEKICTRVAVMYFGELVEI 518
Query: 238 APVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPG-RVPNLLNPPKGCRFHP 290
+ + P H YT+ LL A+P H ++R + +VP ++P K F P
Sbjct: 519 GGRDNVIGRPGHSYTKRLLSAVPITHPSQRSARSTAALQVPQPVSPIKPVGFIP 572
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 242 bits (611), Expect = 4e-63
Identities = 134/326 (41%), Positives = 203/326 (62%), Gaps = 12/326 (3%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAI-MRLLPR 62
E L+K EN+ + ++ VKA+DG+SF+I + E++ ++GE+GCGK+ + I M ++
Sbjct: 3 EILLKAENVRAYYKLEKVSVKAVDGLSFEILEDEVIGVVGESGCGKTTLSNVIFMNMVKP 62
Query: 63 NAIVKGKIIYK-GRNLLELP----EREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
+V GKI + +EL + RK GKEI +I Q + +L P +E + +
Sbjct: 63 LTLVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNALMPTIRMEKYVRHL 122
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ H + +LD+ + + V + DP +K YPFELSGGMRQR +IA+ PSLL
Sbjct: 123 AESHGIDEE-ELLDKARRRFEEVGL-DP-LWIKRYPFELSGGMRQRAVIAIATILNPSLL 179
Query: 178 IADEPTTALDVTIQAQIMNLMLEL-REKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
IADEPT+ALDV Q ++ +++++ R+ SI+ ITH+ V ++ADR+++MYAG++VE
Sbjct: 180 IADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMIIMYAGKIVE 239
Query: 237 IAPVEEIFDNPLHPYTQGLLRAL--PRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKK 294
APVE + + PLHPYTQGL ++ P +R + IPG PNL+NPP GCRFHPRC
Sbjct: 240 FAPVESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSGCRFHPRCPH 299
Query: 295 AKEMCSKEKPKLIEVEKEHYVACHLY 320
A ++C +++P L E+E VAC LY
Sbjct: 300 AMDVCKEKEPPLTEIEPGRRVACWLY 325
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 240 bits (607), Expect = 1e-62
Identities = 138/329 (41%), Positives = 199/329 (59%), Gaps = 14/329 (4%)
Query: 4 EPLVKIENLYIDFITD----RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
E L+ +NL ++ D + VVKA+D VS DI EI + GE+GCGKS KA++ L
Sbjct: 2 ETLISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLAL 61
Query: 60 L-PRNAIVKGKIIY--KGR--NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
L P ++ G+++Y +GR N+ L +RK+R I+ I Q + LNPV + D
Sbjct: 62 LDPPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDTF 121
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
E+ H LD V+ LK + +P E+ + +P +LSGGMRQRV IA+ KP
Sbjct: 122 IEILSSHVKKQTKEFLDLAVQHLKDLGLP--ERVLNMFPHQLSGGMRQRVTIALATVLKP 179
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
++ ADEPTTALDV Q +M L+ +++ + +++L+TH+ GV A++ R+ +MYAG++
Sbjct: 180 RVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGKI 239
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPR-GHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
VE P EIF NPLHPYT+ L+++LP G K R IPG P+L+ PP GCRFHPRC
Sbjct: 240 VEEGPTLEIFKNPLHPYTRYLIQSLPAIGDKKLR--SGIPGSPPSLVAPPPGCRFHPRCP 297
Query: 294 KAKEMCSKEKPKLIEVEKEHYVACHLYGG 322
A + C +E+P L E++ H VAC L G
Sbjct: 298 HASQRCREEEPLLKEIKPGHKVACFLMEG 326
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 240 bits (607), Expect = 1e-62
Identities = 129/317 (40%), Positives = 196/317 (61%), Gaps = 19/317 (5%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L K +NLY V A+DG+S +IRKGE L GE+GCGKS + ++RL+
Sbjct: 22 LFKQKNLY---------VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-- 70
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
+G I + G ++ +L + EMRK+R + + ++FQDP +SLNP TI D + ++H+L
Sbjct: 71 -EGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
Query: 126 VGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
D+IV++L+ V + E+ + YP ELSGG QRV IA + P ++ DEPT+
Sbjct: 129 SEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALD+++QAQI+NL++ L+ KF + L I+H+ V+ M+DR+ +MY G+VVEI +++
Sbjct: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
Query: 245 DNPL-HPYTQGLLRALPRGHKTERELENI--PGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
+ HPYT LL + P H ++R + G VP+ +N P GCRFH RC + C
Sbjct: 247 KGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKD 306
Query: 302 EKPKLIEVEKEHYVACH 318
E+P L+E++K+HYVACH
Sbjct: 307 EEPPLVEIKKDHYVACH 323
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 240 bits (605), Expect = 2e-62
Identities = 132/305 (43%), Positives = 196/305 (63%), Gaps = 9/305 (2%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR-LLPRNAIVKGKIIYKGRNLLE 79
G +KA+DG+SF I +GE L L+GE+GCGK+ TAK IMR + P + + + ++ +
Sbjct: 26 GYLKAVDGISFHIEEGETLGLVGESGCGKTTTAKLIMRGIEPTEGEIVLNMDGEKVDITK 85
Query: 80 LPEREMRKIRGKE-IAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVK-LL 137
L E+E+R+ + + MIFQDP +SLNP T+ D + E V+ + +D IV LL
Sbjct: 86 LSEKELREKGVRRFLQMIFQDPYSSLNPRMTVRDIIAEPLVVNGVIKGKEEIDAIVSDLL 145
Query: 138 KMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNL 197
+ V + PE ++ YP SGG RQR+ IA ++ KP L++ DEPT+ALDV++QAQI+NL
Sbjct: 146 RAVGLR-PEY-MQRYPHAFSGGQRQRIAIARAIALKPKLVLCDEPTSALDVSVQAQIINL 203
Query: 198 MLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLR 257
+ +L++++ + L I+H+ GVV + +RV VMY G++VE+A EE+F +P HPYT+ LL
Sbjct: 204 LKDLQKEYNLTYLFISHDLGVVEHITNRVAVMYVGRIVELAETEELFSSPKHPYTEALLS 263
Query: 258 ALPR-GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEV---EKEH 313
A+P+ K +R+ + G VP+ NPP GC FHPRC AK +C + P L V + H
Sbjct: 264 AVPKPDPKRKRKKAQLTGEVPDPSNPPSGCYFHPRCPYAKAICKEVYPDLRNVGTDQNPH 323
Query: 314 YVACH 318
VACH
Sbjct: 324 LVACH 328
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 239 bits (604), Expect = 3e-62
Identities = 135/324 (41%), Positives = 200/324 (61%), Gaps = 17/324 (5%)
Query: 6 LVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
L+K+E L F G+ VKA+D VSF I +GE ++++GE+GCGKS T +AI+R
Sbjct: 5 LLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILR 64
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
L + GKI ++G +LL L +REMRK R K++ +IFQDP S+NP TI + E
Sbjct: 65 L---DEPTDGKIEFQGEDLLSLNKREMRKKR-KDLQIIFQDPYASINPRQTIRQVLEEAM 120
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
++ K+ + I +L+ V + + +P E SGG RQR+ IA LS P L++
Sbjct: 121 EIQKVVPRDKRGERIRELMDTVGLGSHQ--ADRFPHEFSGGQRQRIGIARALSVNPKLIV 178
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DE +ALDV+IQAQ++NL+ L+ +F+ + L I+H+ GVV ++DRV+VMY G++VEIA
Sbjct: 179 CDEAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIA 238
Query: 239 PVEEIFDNPLHPYTQGLLRALP-RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKE 297
+F+NP HPYT+ LL A+P + ++E + G VP+ ++PP GCRFH RC A +
Sbjct: 239 DKTSLFENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCPFATD 298
Query: 298 MCSKEKPKLIE---VEKEHYVACH 318
C E P+L ++ H ACH
Sbjct: 299 KCRTETPELRTADYMKDGHLAACH 322
>pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654573|gb|AAF93346.1| (AE004107) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 571
Score = 239 bits (603), Expect = 4e-62
Identities = 118/269 (43%), Positives = 176/269 (64%), Gaps = 4/269 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PRNA 64
L++++NL I++ + GV A+ ++ DI++GEI+ ++GE+G GKS A++ LL P
Sbjct: 3 LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
I G++ G + L + MR++RG +I IFQDP+TSLNP+FT+E Q+ E +
Sbjct: 63 IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+ L+K V IP PE R+K YP + SGGMRQRV+IA+ L+ +P L+IADEPTT
Sbjct: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDV+IQ QI+NL+ EL +K +L+TH+ GVV+ + DRV VMY G +VE P ++
Sbjct: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIP 273
P HPYT+ L+ A+PR ++R+L+ P
Sbjct: 243 GTPEHPYTRSLISAVPR---SDRKLDRFP 268
Score = 185 bits (464), Expect = 8e-46
Identities = 104/264 (39%), Positives = 162/264 (60%), Gaps = 13/264 (4%)
Query: 5 PLVKIENLYIDFITD-------RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM 57
PL+K+EN+ + F+T R V+A + VSF + +GE L+GE+G GKS A+ I
Sbjct: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
Query: 58 RLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
L NA G++ ++G +L L R+ +++ M+FQ+P TS+NP I D + E
Sbjct: 361 GLYQPNA---GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
Query: 118 FKVHKLPVVGSILDEIVK-LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+ HKL S +IV LL+ V + + YP E SGG RQR+ IA L+ +P L
Sbjct: 418 IRFHKLTRSESETRQIVNDLLEHVGLG--KMAGLKYPHEFSGGQRQRISIARALATRPRL 475
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LI DEPT+ALDV++QAQI+NL+ +L+++ ++L I+H+ V+ +M DRV VM G ++E
Sbjct: 476 LICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLE 535
Query: 237 IAPVEEIFDNPLHPYTQGLLRALP 260
+AP E++F +P H Y++ L+ +P
Sbjct: 536 VAPTEQLFTDPQHEYSKKLISLMP 559
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 239 bits (603), Expect = 4e-62
Identities = 136/335 (40%), Positives = 198/335 (58%), Gaps = 26/335 (7%)
Query: 4 EPLVKIENLY--------IDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
EP++++ L I F G VKA+DGV F + +GE L ++GE+GCGKS AK
Sbjct: 6 EPILEVRGLVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTVAKM 65
Query: 56 IMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG 115
++ L A G+I YKG ++ L R ++ +R + I M+FQDP TSLNP T+ D +G
Sbjct: 66 LVNLERPTA---GEIRYKGEDITRLSGRALKSVR-RNIQMVFQDPYTSLNPRMTVGDIIG 121
Query: 116 EMFKVH-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
E + +H ++ G + LL +V + +PE + YP + SGG RQR+ IA L+ +P
Sbjct: 122 EAYDIHPEVAPKGDRRRRVQDLLDVVGL-NPEY-INRYPHQFSGGQRQRIGIARGLALRP 179
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+++ADEP +ALDV++QAQ++NLM L+++F+ S + I H+ +V ++DRV VMY G++
Sbjct: 180 EIIVADEPVSALDVSVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRI 239
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELEN---IPGRVPNLLNPPKGCRFHPR 291
VE EEI+D+P HPYTQ LL A+P RE + G VP+ N P GCRF R
Sbjct: 240 VETGRDEEIYDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVPSPTNIPSGCRFRTR 299
Query: 292 CKKAKEMCSKEKPKL--------IEVEKEHYVACH 318
C KA+E C+ E P L + H ACH
Sbjct: 300 CWKARERCALEVPALAVPAEFRSVSGPAAHDSACH 334
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 238 bits (602), Expect = 5e-62
Identities = 132/329 (40%), Positives = 201/329 (60%), Gaps = 14/329 (4%)
Query: 4 EPLVKIENL----YIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-R 58
E LV+ +NL ++F + ++A+D VS I GEI + GE+GCGKS K ++
Sbjct: 2 ETLVEGKNLKAYYVLEFWGKKRTIRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKTLLAN 61
Query: 59 LLPRNAIVKGKIIY----KGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
L P + G++ Y K N++ L E E R+++ + I+ I Q + LNPV I D
Sbjct: 62 LEPPLRLFGGELNYWLDSKPVNVVSLKEEERRRLKWRFISYIPQGSMHVLNPVKRIRDTF 121
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
E+ K H + L+ ++ LK + +P + + +P +LSGGMRQRV IA+ KP
Sbjct: 122 MEILKSHVRRQKETFLEMAIEHLKALGLPS--RVLDMFPHQLSGGMRQRVTIALATLLKP 179
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+++ADEPTTALDV Q ++ L+ +++++ + +I+L+TH+ G+ A++ R+ +MYAG++
Sbjct: 180 RIILADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQVTTRMAIMYAGKI 239
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPR-GHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
VE P EIF PLHPYT+ L+++LPR G K R E IPG P+L++PP GCRFHPRC
Sbjct: 240 VEEGPTLEIFKEPLHPYTRYLIQSLPRVGDKQLR--EGIPGSPPSLVSPPSGCRFHPRCP 297
Query: 294 KAKEMCSKEKPKLIEVEKEHYVACHLYGG 322
A + C +E+P +EV H AC L GG
Sbjct: 298 HATQRCEEEEPVFLEVNPGHRAACFLLGG 326
>emb|CAC16446.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 288
Score = 237 bits (599), Expect = 1e-61
Identities = 125/260 (48%), Positives = 175/260 (67%), Gaps = 2/260 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+PL++I+ L +DF VV A+ VS +R GE LA++GE+G GKS TA +++RL P
Sbjct: 25 QPLLEIDGLSVDFHLAGSVVHAVRDVSLHVRAGETLAVVGESGSGKSATALSVLRLNPSP 84
Query: 64 AIV--KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
V G+I + GR+LL L E+E+ ++RG++IAM+FQDP+T L+P+ + Q+ E+ + H
Sbjct: 85 PCVYASGEIRFDGRDLLRLSEKELGRVRGRDIAMVFQDPMTCLDPLQRVGAQVAEVLRHH 144
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ L V IPDP R + YP ELSGG+RQRVMIA L A+P +LIADE
Sbjct: 145 TGMSRAEAAKAALAALDEVGIPDPALRYRQYPHELSGGLRQRVMIATALVARPRVLIADE 204
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDVT+Q QI++L++ L+ K + ++LITH+ VVAE ADRVVVM+ G+VVE V
Sbjct: 205 PTTALDVTVQRQILDLLVTLQHKHDMGVVLITHDLAVVAETADRVVVMHRGKVVETGDVL 264
Query: 242 EIFDNPLHPYTQGLLRALPR 261
++FD P YT+ LL A PR
Sbjct: 265 DVFDRPADDYTRRLLAATPR 284
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 237 bits (598), Expect = 1e-61
Identities = 124/296 (41%), Positives = 192/296 (63%), Gaps = 7/296 (2%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
VKA++ ++F + KGE++ LIGE+G GK+ +A++RL+ G++I+ G ++ +L +
Sbjct: 51 VKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALLRLIEPTG---GQVIFNGTDITKLGK 107
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKI 142
+MR R +E+ +IFQDP SLNP T+ D +GE ++H L + +D I +LL+ V +
Sbjct: 108 SQMRDYR-REMQIIFQDPFASLNPRMTVSDILGEAMQIHNLHPGKARVDRIAELLQRVGL 166
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
PE + YP E SGG RQR+ IA L+ PS ++ADEP +ALDV+IQAQ++NL+ +L+
Sbjct: 167 R-PE-HMGRYPHEFSGGQRQRIGIARALAVDPSFIVADEPVSALDVSIQAQVVNLIQDLQ 224
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRG 262
E+ ++L I H+ VV + DR++VMY G+++EIAP E+ NP HPYT+ LL A P
Sbjct: 225 EELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIAPSRELNRNPKHPYTEALLSASPVP 284
Query: 263 HKT-ERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVAC 317
T +R+ + G +P+ +NPP GC F RC+ A C+ P+L EV +H+ AC
Sbjct: 285 DPTIKRQRIILEGDIPSPINPPSGCVFRTRCRYAIADCANIVPELREVSPDHFKAC 340
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 235 bits (593), Expect = 6e-61
Identities = 123/305 (40%), Positives = 188/305 (61%), Gaps = 10/305 (3%)
Query: 20 RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLE 79
R V+A+DGVSF++++GE+L+L+GE+GCGK+ T + I+ L GKI +K R +
Sbjct: 26 RDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGRIIVGL---ERPTSGKIYFKDREITS 82
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKM 139
L E E R+++ + I M+FQDP SLNP I + + E +H + + + +L
Sbjct: 83 LSEEEQRRMK-RHIQMVFQDPYASLNPRMKIGEHLVESLTIHGIAENDEAREMAMSMLDR 141
Query: 140 VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLML 199
V +P E+ P++LSGG RQRV IA + KP ++ADEP + +DV+++A I++L++
Sbjct: 142 VGLPG-EQFFNRMPYQLSGGQRQRVAIARAMILKPDFVVADEPVSMIDVSLRAAILDLLM 200
Query: 200 ELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRAL 259
R+++ S+L ITH+ V + DR+ VMY G+++EI E+ NP HPYT LL ++
Sbjct: 201 SFRDEYNLSMLFITHDLSVARIVGDRIAVMYLGKIMEIGKTREVIHNPRHPYTAALLSSV 260
Query: 260 PRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH- 318
P K R++E I G + N ++ P GCR+HPRC A+E C KE+P+L EH ACH
Sbjct: 261 PSFVKKGRKVE-IIGDIANPIDIPSGCRYHPRCPFAREKCKKEEPEL--EGGEHSFACHY 317
Query: 319 -LYGG 322
L GG
Sbjct: 318 PLEGG 322
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 234 bits (591), Expect = 1e-60
Identities = 128/328 (39%), Positives = 199/328 (60%), Gaps = 13/328 (3%)
Query: 1 MSGEPLVKIENLYIDFITDRGV------VKAIDGVSFDIRKGEILALIGETGCGKSVTAK 54
M+ + L++++NL F + ++A+D VSF+I+K EIL L+GE+GCGKS K
Sbjct: 1 MTSDTLIEVKNLTKLFPVTSSILGKKISIRAVDNVSFEIKKNEILGLVGESGCGKSTLGK 60
Query: 55 AIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
++RLL + G +++KG+++ +L +++++ R K + M+FQ+P TS +P T+ + +
Sbjct: 61 LLVRLLEPTS---GTVLFKGQDIYKLRGKKLKEYR-KSVQMVFQNPYTSFDPRLTLFENI 116
Query: 115 GEMFKVHKLPV-VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAK 173
E HKL + L ++ + V + PE + YP ELSGG QR IA ++ +
Sbjct: 117 AEPLYTHKLALNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAIALE 176
Query: 174 PSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
P ++ADEPT+ LD ++++ I+NL+ +LR++ TS L ITH+ +ADR+ VMY G+
Sbjct: 177 PEFIVADEPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMYLGK 236
Query: 234 VVEIAPVEEIFDNPLHPYTQGLLRA-LPRGHKTERELENIPGRVPNLLNPPKGCRFHPRC 292
+VEI +E+ NPLHPYTQ LL A LP + + G P + CRF PRC
Sbjct: 237 IVEIGESKEVLKNPLHPYTQALLEANLPIDPDASLKEPKVKGE-PKPVFETGYCRFFPRC 295
Query: 293 KKAKEMCSKEKPKLIEVEKEHYVACHLY 320
A E C KE+P L+EV+K+HYVAC LY
Sbjct: 296 PYAFEKCKKEEPPLVEVKKDHYVACWLY 323
>pir||T03431 probable transport protein accB - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153178|gb|AAC17198.1| (AF010180) AccB
[Agrobacterium tumefaciens]
Length = 321
Score = 232 bits (586), Expect = 4e-60
Identities = 134/298 (44%), Positives = 179/298 (59%), Gaps = 11/298 (3%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
+ I+GVSF + G+ L L+GE+GCGKS+T AI + LPR G I EL
Sbjct: 28 ITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTI-------ELDS 80
Query: 83 REMRKIRGKE-IAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVK 141
K GK IAMI+QDP +SLNPV +I + H+ E ++LL+ V
Sbjct: 81 GP--KADGKPAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVG 138
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
I + R++SYP E SGGM QRVMIA L+AKP L+IADEPTTALDVT QAQI++L+ EL
Sbjct: 139 IDRAKSRLRSYPHEYSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILHLLEEL 198
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR 261
R + ++L+++H+ GV+A +ADR VMY G++VE APV E+ + HPY + L+ +P
Sbjct: 199 RSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCMPT 258
Query: 262 GHKTERELE-NIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
+ E IPG VP L N P GC +HPRC +A E CS P + V H AC+
Sbjct: 259 IDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACY 316
>gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1]
Length = 610
Score = 232 bits (586), Expect = 4e-60
Identities = 125/265 (47%), Positives = 176/265 (66%), Gaps = 1/265 (0%)
Query: 2 SGEPLVKIENLYIDFITDRGV-VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+G PLV + L + F R ++A+ VS+ I GE+LAL+GE+G GKSV+A A+M LL
Sbjct: 15 TGAPLVSVSGLTVSFDRHREEPIEAVRDVSWSIGSGEVLALVGESGSGKSVSALAVMGLL 74
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
PRNA V G I ++G LL E+ R +RG I ++ QDP+TSLNPV+TI Q+ E +
Sbjct: 75 PRNARVAGSIRWRGEELLGASEKRRRALRGSRIGLVPQDPMTSLNPVYTIGAQIREGIRA 134
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
H+ + + ++LL+ + IP +R+ SYP ELSGGMRQRV+IAM ++ P L+IAD
Sbjct: 135 HQKLSEREMAERTLELLETMGIPHARERMNSYPHELSGGMRQRVVIAMAMANNPDLIIAD 194
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
E TTALDVT+QAQ+++ + + + ++LLITH+ GVVA ADRV VM G+VVE V
Sbjct: 195 EATTALDVTVQAQVLDALKKAQALTGAALLLITHDLGVVAGRADRVAVMQRGEVVEQGTV 254
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKT 265
+EIF P YT+ LL ++PR + T
Sbjct: 255 DEIFYQPASSYTRKLLHSIPRLNHT 279
Score = 184 bits (463), Expect = 1e-45
Identities = 106/269 (39%), Positives = 163/269 (60%), Gaps = 20/269 (7%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLEL 80
GV+KA+ GV D+ G L ++GE+G GK+ +++ L P I G I++ G+++ +
Sbjct: 333 GVIKAVAGVDLDVEAGTTLGIVGESGSGKTTLIRSLFNLEP---ITHGTILFDGQDVHRM 389
Query: 81 PEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDE------IV 134
P R+ R++R K + M+FQDP SL+P+ T+ D + E P V + +D ++
Sbjct: 390 PPRDRRRMR-KCVQMVFQDPYASLDPMMTVRDILME-------PAVINRMDRKLAERRVM 441
Query: 135 KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQI 194
+LL+ V + PE + YP E SGG RQR+ IA L P LL+ DEP ++LDV+IQA++
Sbjct: 442 ELLERVHLK-PEHAAR-YPNEFSGGQRQRIAIARALMLYPRLLVLDEPVSSLDVSIQAEV 499
Query: 195 MNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQG 254
+ L+ EL++ S L ++H+ VVAE+A V+VMY G++VE V+E+F NP HPYT+
Sbjct: 500 LTLLKELQKDLNLSYLFVSHDLSVVAEIAHSVIVMYRGRIVERGRVDELFRNPKHPYTRA 559
Query: 255 LLRALP-RGHKTERELENIPGRVPNLLNP 282
LL A+P +TER E I L +P
Sbjct: 560 LLSAVPIPDPRTERRRERIVFNSDTLASP 588
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 231 bits (582), Expect = 1e-59
Identities = 128/301 (42%), Positives = 186/301 (61%), Gaps = 11/301 (3%)
Query: 20 RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLE 79
R VKA+D V+ I +G+ L L+GE+G GK+ + I+RL G+I + G ++++
Sbjct: 49 RAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTG---GRIFFDGIDVMK 105
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKM 139
L R +++ R + +IFQDP SLNP TI + + E KVH + V G + + IV LL
Sbjct: 106 LRGRGLKEFR-RRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKV-GDLQEYIVSLLYQ 163
Query: 140 VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLML 199
V + E + YP E SGG RQR+ IA +L+ KP ++ DEPT+ALDV++QAQI+NL+
Sbjct: 164 VGLN--ETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLK 221
Query: 200 ELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRAL 259
+L+ K+ + L I+H+ GVV M+D + VMY G++VE EE+F+ PLHPYT+ LL ++
Sbjct: 222 DLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESI 281
Query: 260 PRGH---KTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVA 316
P R I G P+ +NPP GCRF RC A + C E+P L EVE+ H+VA
Sbjct: 282 PVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKC-LEEPPLEEVERGHWVA 340
Query: 317 C 317
C
Sbjct: 341 C 341
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 230 bits (580), Expect = 2e-59
Identities = 124/298 (41%), Positives = 187/298 (62%), Gaps = 18/298 (6%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
V+A+D VS +IRKGE+L ++GE+G GK+ K + L G +I+ G +E+ +
Sbjct: 35 VRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTG---GNLIFMG---MEVND 88
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKI 142
R + +R K I M+FQ+P+TS+NP ++D + E K + V +L+E+ VK
Sbjct: 89 RNINHVR-KHIHMVFQNPMTSINPRMKVKDIVREAMKEKREERVKKLLEEVGLDYNYVK- 146
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
YP ELSGG QRV IA L+ +P LI DEPT+ALD ++QAQI+NL+++L+
Sbjct: 147 -------DKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQ 199
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRG 262
++ + + L ITHN V ++DRV++MYAG++VE +E+ P+HPYTQ LL ++P
Sbjct: 200 KERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQSLLSSVPEL 259
Query: 263 HKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHLY 320
K +EL+ G VP+L+NPP GCRF+PRC A +C +++P L+E+ VAC LY
Sbjct: 260 GK--KELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEINGRK-VACWLY 314
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 229 bits (579), Expect = 3e-59
Identities = 122/307 (39%), Positives = 195/307 (62%), Gaps = 21/307 (6%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
V+A+DGVSF I +GEI++L+GE+G GK+ K I+RLL + G+I+++G+++++ +
Sbjct: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTS---GRILFEGKDIMKFSK 78
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIV-KLLKMVK 141
+E++ +++ +FQDP S NP+ ++ +F + + +E++ K L+ V
Sbjct: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVG 138
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
+ E R K YP +LSGG QR++IA L KP LLIADE + LD + + ++NL+ E
Sbjct: 139 LNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEF 197
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP- 260
R+K+ TS+L ITH+ + ++D ++MY G +VE+ E++F NPLHPYT+ LL ++P
Sbjct: 198 RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPD 257
Query: 261 -------RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEH 313
+G + E+E G+V + KGCR+ PRC KAK++C K +P LIEVEK H
Sbjct: 258 LNVKWEFKGIEPEKE----EGKVWKI----KGCRYAPRCPKAKDVCFKIRPTLIEVEKNH 309
Query: 314 YVACHLY 320
+VACHLY
Sbjct: 310 WVACHLY 316
>gi|10954941 Probable accB [Agrobacterium tumefaciens]
>gi|6498294|dbj|BAA87746.1| (AB016260) Probable accB
[Agrobacterium tumefaciens]
Length = 321
Score = 229 bits (579), Expect = 3e-59
Identities = 131/298 (43%), Positives = 176/298 (58%), Gaps = 11/298 (3%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
+ I+GVSF + G+ L L+GE+GCGKS+T AI + LPR G I
Sbjct: 28 ITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELNSG------ 81
Query: 83 REMRKIRGKE-IAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVK 141
K GK IAMI+QDP +SLNPV +I + H+ E ++LL+ V
Sbjct: 82 ---PKADGKPAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVG 138
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
I + R++SYP E SGGM QRVMIA AKP L+IADEPTTALDVT QAQI++L+ EL
Sbjct: 139 IDRAKSRLRSYPHEFSGGMNQRVMIATRSLAKPKLMIADEPTTALDVTTQAQILHLLEEL 198
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR 261
R + ++L+++H+ GV+A +ADR VMY G++VE APV E+ ++ HPY + L+ +P
Sbjct: 199 RSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLEHAAHPYARALIGCMPT 258
Query: 262 GHKTERELE-NIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
+ E IPG VP L N P GC +HPRC +A E CS P + V H AC+
Sbjct: 259 IDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACY 316
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 229 bits (579), Expect = 3e-59
Identities = 137/380 (36%), Positives = 207/380 (54%), Gaps = 67/380 (17%)
Query: 6 LVKIENLYIDFITDRGV-------VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
++++ENL F GV VKA+DGVSF I +GE L+GE+GCGK+ ++R
Sbjct: 5 ILRVENLVKHFPIRAGVFKRIVGWVKAVDGVSFSINEGETFGLVGESGCGKTTIGMTLLR 64
Query: 59 L-------------------LPRNAIVKG-KIIYKGRNLLELPEREMRKIRG-------- 90
L +PR+ K K Y R + + E ++ K+ G
Sbjct: 65 LYEPTSGRIIVDNEDTTYYFMPRSKAKKYIKQTYLSR-FVNMKESDVEKLEGVDREYARI 123
Query: 91 ----------------------------KEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
+E+ ++FQDP +SLNP ++ +GE H+
Sbjct: 124 FFEEAKGSPKKFMSILLDDLPEKRKKFRREMQIVFQDPYSSLNPRLRVKSIVGEGIVTHR 183
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ + I ++L+ V IP V +P E SGG RQR+ IA L+ +P L++ADE
Sbjct: 184 IARGKEVEKRIKEILEDVGIPSAY--VYRFPHEFSGGQRQRIGIARALALEPKLVVADEA 241
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
ALDV+I++QI+NLM +L+ + + + + I+H+ VV ++DR+ VMY G++VE+AP ++
Sbjct: 242 VAALDVSIRSQIINLMEDLQREHKLTYIFISHDLAVVKHISDRIGVMYLGKMVELAPKKD 301
Query: 243 IFDNPLHPYTQGLLRALPRGHKT-ERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
+F+ PLHPYT L+ A+P T +RE + G VP+ +NPP GCRFH RC AKE+CSK
Sbjct: 302 LFEKPLHPYTVALMSAIPVPDPTKKRERIILKGDVPSPINPPSGCRFHTRCPIAKEICSK 361
Query: 302 EKPKLIEVEKEHYVACHLYG 321
E+P EVE+ H+VACH G
Sbjct: 362 EEPAFREVEEGHFVACHFPG 381
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 228 bits (575), Expect = 7e-59
Identities = 118/243 (48%), Positives = 156/243 (63%), Gaps = 21/243 (8%)
Query: 76 NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL------------ 123
+L PER MR +RG E+ MIFQDP+TSLNP T+ +Q+ E ++H+
Sbjct: 214 DLTAAPERAMRDLRGGEMGMIFQDPMTSLNPSLTVGEQVAESLRLHRYGEQPTDSWLNGL 273
Query: 124 -------PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
++ ++V +L V IP+PE R+ YP E SGGMRQRV+IA+ L+ +P L
Sbjct: 274 RAAISRGDTDEQVVADVVDVLDAVGIPEPETRLDEYPHEFSGGMRQRVLIAIALACRPRL 333
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LIADEPTTALDVTIQAQI++ + +L+++F S+L ITH+ GVVAE DRV VMYAG++VE
Sbjct: 334 LIADEPTTALDVTIQAQILDRISDLQDEFGMSVLFITHDLGVVAETCDRVAVMYAGEIVE 393
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAK 296
PVEEIF NP HPYT LL ++PR L I G VP+L++ P GC F RC A
Sbjct: 394 EGPVEEIFHNPSHPYTYALLESIPRDDAD--RLHPIEGNVPDLIDLPSGCHFEARCPWAS 451
Query: 297 EMC 299
+ C
Sbjct: 452 DAC 454
Score = 216 bits (544), Expect = 3e-55
Identities = 116/283 (40%), Positives = 178/283 (61%), Gaps = 15/283 (5%)
Query: 19 DRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLL 78
D+ VKA+DGV D+ +GE L L+GE+GCGKS T ++I+RL+ G++++ G ++
Sbjct: 528 DQEPVKAVDGVDLDVYEGETLGLVGESGCGKSTTGRSILRLVEPT---DGRVVFAGDDVT 584
Query: 79 ELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSIL-------D 131
+L + E+R R ++ MIFQDPL+SL+P +I D + E ++H LP D
Sbjct: 585 DLNDDELRATR-TDMQMIFQDPLSSLDPRQSIGDTILEPLQIHDLPANPGAQSTRQARRD 643
Query: 132 EIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQ 191
++ L+ V + DP + + YP ELSGG RQRV IA L+ P ++ADEP +ALDV++Q
Sbjct: 644 RVIDLMDAVGL-DPSQYDR-YPHELSGGQRQRVGIARALAVDPDFIVADEPVSALDVSVQ 701
Query: 192 AQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPY 251
AQI+NL+ +L+++F+ + L I H+ VV + DR+ VMY G++VE A ++F P HPY
Sbjct: 702 AQILNLLEDLQDEFDLTYLFIAHDLSVVRHICDRIAVMYLGKIVETAQTAQLFSTPKHPY 761
Query: 252 TQGLLRALPRGH--KTERELENIPGRVPNLLNPPKGCRFHPRC 292
T+ LL ++P T + + G VP+ ++PP GCRF RC
Sbjct: 762 TKSLLSSIPDPDPLATTDDRIILEGDVPSPIDPPSGCRFRTRC 804
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 228 bits (574), Expect = 1e-58
Identities = 129/362 (35%), Positives = 202/362 (55%), Gaps = 48/362 (13%)
Query: 3 GEPLVKIENLYIDFITDRGV-----------VKAIDGVSFDIRKGEILALIGETGCGKSV 51
G ++++E+L + F R + VKA+DGVSF I +GE+ L+GE+GCGK+
Sbjct: 16 GGEVLRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTT 75
Query: 52 TAKAIMRLLPRNAIVKGKIIYKGR--------------------NLLELPEREMRKIRGK 91
T KAI+RL+ G++ +K + +LL +P R+ + +R +
Sbjct: 76 TGKAILRLVKATG---GRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLR-R 131
Query: 92 EIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKS 151
E+ +++QDP SLNP FTI+ + + +H + + + ++L+ VK+ +
Sbjct: 132 ELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPASDFMDR 191
Query: 152 YPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILL 211
YP +LSGG RQRV IA PSL++ADEP + LDV+I+A+I+ L+L REK TS+L
Sbjct: 192 YPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLF 251
Query: 212 ITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTER-ELE 270
ITH+ V + DR+ VMY G++VE I + P+HPYT+ L+ A+P + R +L
Sbjct: 252 ITHDLAVARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSNRKKLR 311
Query: 271 NIP--GRVPNLLNPPKGCRFHPRC-------KKAKEMCSKEKPKL---IEVEKEHYVACH 318
+P G +P+ P GCRFHPRC + +EMC ++P L E E++ V+C
Sbjct: 312 EVPIKGEIPSAAAIPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSCW 371
Query: 319 LY 320
Y
Sbjct: 372 RY 373
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 228 bits (574), Expect = 1e-58
Identities = 120/309 (38%), Positives = 192/309 (61%), Gaps = 21/309 (6%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
V+A+D V+F I++GEI++L+GE+G GK+ K I+RL+ + GKI++KG ++ +
Sbjct: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTS---GKILFKGEDIWSFDK 78
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVK-LLKMVK 141
++ K + +FQDP S NP++ ++ +F+ V DE+V+ L+ V
Sbjct: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVG 138
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
+ +P + + +P +LSGG QR++IA L +PSLLIADE + LD + + ++NL+ E
Sbjct: 139 L-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEF 197
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP- 260
R+ TS++ ITH+ + ++D++++MY G +VE E++FDNPLHPYT+ LL ++P
Sbjct: 198 RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPD 257
Query: 261 -------RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEH 313
+G + ERE G+V L KGC+F PRC AK+ C K +P+ +EVEK H
Sbjct: 258 LNVKWEFKGIEPERE----EGKVWEL----KGCKFAPRCSLAKDKCWKIRPEPVEVEKNH 309
Query: 314 YVACHLYGG 322
+VACHLYGG
Sbjct: 310 WVACHLYGG 318
>gb|AAD48155.1|AF086619_1 (AF086619) ABC transporter homolog [Loofah witches'-broom
phytoplasma]
Length = 264
Score = 228 bits (574), Expect = 1e-58
Identities = 109/252 (43%), Positives = 182/252 (71%), Gaps = 1/252 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA- 64
++++ NL+ F T++G+VKA+ G+SF + +G+ L L+GE+G GKS TA +I++L +
Sbjct: 3 ILEVNNLHTYFETEKGLVKAVQGISFYLEQGKTLGLVGESGSGKSQTANSILKLFEKTQK 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
I +G+II+ + + + E++M+KIRGKEI+MIFQDP+TSLNP+F I+DQ+ E+ +H+
Sbjct: 63 IHQGEIIFNNQVISDFNEKKMQKIRGKEISMIFQDPITSLNPMFKIKDQIMEILFIHQEI 122
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
++ + +LK KI + E+ + YP++LSGGM QRVMIA+ L +P LLI DE T
Sbjct: 123 TYKEAYEKALNMLKKTKIHNCEQIMNCYPYQLSGGMCQRVMIAIALICQPKLLIVDEATI 182
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDV +Q +I+NL+ E++++ +T++L I+H+ V++E++D ++VM G+++E A ++I
Sbjct: 183 ALDVIVQKEILNLIKEMQKENQTAVLFISHDLSVISEISDDIIVMLKGKIIEKASTQQIL 242
Query: 245 DNPLHPYTQGLL 256
+P HPYT+ LL
Sbjct: 243 KDPKHPYTRTLL 254
>gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter ATPase subunit [uncultured
proteobacterium EBAC31A08]
Length = 532
Score = 228 bits (574), Expect = 1e-58
Identities = 122/259 (47%), Positives = 171/259 (65%), Gaps = 3/259 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++++ +L I+F T G+ A+D +SFDI K + LAL+GE+G GKSVTA +I++LL +
Sbjct: 4 ILEVSDLSINFSTRDGLFNAVDNISFDIEKNQTLALVGESGSGKSVTAMSILQLLQKPQA 63
Query: 66 VKGK---IIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
K I + G ++ ++ +RG I+MIFQ+P+TSLNP + +Q+ E +H
Sbjct: 64 SYSKESSIKFNGDEIINAKYEKLLSLRGNIISMIFQEPMTSLNPYHRVGNQITESILLHS 123
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+DE KL+ +V+I D E+R +YP ELSGG RQRVMIAM L KP LLIADEP
Sbjct: 124 KSSKKDAIDEAKKLMALVEIDDVERRFYAYPHELSGGQRQRVMIAMALVNKPELLIADEP 183
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
TTALDVTIQAQI++LM +L+ + SIL ITH+ G+V E +D V VM G++VE E
Sbjct: 184 TTALDVTIQAQILDLMSKLKNELGMSILFITHDLGLVQEFSDNVCVMKNGKIVEQGNTVE 243
Query: 243 IFDNPLHPYTQGLLRALPR 261
+F+NP H YT+ LL A P+
Sbjct: 244 VFNNPSHEYTKKLLDAEPQ 262
Score = 153 bits (383), Expect = 2e-36
Identities = 91/264 (34%), Positives = 149/264 (55%), Gaps = 13/264 (4%)
Query: 1 MSGEPLVKIENLYIDF------ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAK 54
+S EP+++I +L + + + A+ SF I K + L+GE+G GKS K
Sbjct: 269 VSDEPIIEINDLNVYYSIPSTNFFKKNTFHAVKNTSFSIYKNTTIGLVGESGSGKSTLGK 328
Query: 55 AIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
AI L+ KG I ++GR++ ++E ++++ K + ++FQDP SL+P T+ + +
Sbjct: 329 AIANLVS----YKGNIKFEGRDINSNSQKENKELK-KNVQIVFQDPYGSLSPRMTVGEIV 383
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
GE VH + I K+L V I K YP E SGG RQR+ IA L P
Sbjct: 384 GEGLGVHFKLTKKERDERIDKVLSDVGIEIVAKN--KYPHEFSGGQRQRIAIARSLIMNP 441
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+ +I DEPT+ALD +IQ Q+++L+ E++ ++ + L I+H+ V+ M+D + VM G++
Sbjct: 442 AFMILDEPTSALDRSIQIQVIDLLKEIQNEYGLTYLFISHDLKVIRSMSDFIFVMKNGEI 501
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRA 258
VE P ++F++P YT+ LL A
Sbjct: 502 VESGPSHKVFESPEQDYTKKLLSA 525
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 227 bits (573), Expect = 1e-58
Identities = 127/326 (38%), Positives = 195/326 (58%), Gaps = 17/326 (5%)
Query: 6 LVKIENLYIDFITD----RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL- 60
+++ ENL +I D + VVKA+D V+ I + EI + GE+GCGKS +A+ +
Sbjct: 3 VLRTENLKSYYILDIFGKKRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAAIE 62
Query: 61 PRNAIVKGKIIYKGR----NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE 116
P IV GK++Y+ ++ L + E R++R I+ + Q ++ LNPV I++ +
Sbjct: 63 PPQRIVGGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETFKD 122
Query: 117 MFKVHKLPVVGSILDEIVKLLK--MVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
+ H G +E ++ K + ++ P + + +YP +LSGGMRQRV IA+ P
Sbjct: 123 FIESH---TTGKTKEEAYEMAKEHIKELGLPIEILNAYPHQLSGGMRQRVTIALATVLSP 179
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
++IADEPTTALDV Q ++ L+ E++ + +I+L+TH+ GV A + DR+ +MYAG++
Sbjct: 180 KVIIADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKI 239
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPR-GHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
+E EEIF+NP+HPYT+ L+ +LP+ G K R E+ PG P+L + P GC FHPRC
Sbjct: 240 IEEGKTEEIFENPMHPYTKYLIYSLPKFGDKGRR--ESAPGSPPSLADLPPGCSFHPRCP 297
Query: 294 KAKEMCSKEKPKLIEVEKEHYVACHL 319
A + C KE P L E H VAC L
Sbjct: 298 HAFDRCKKEVPPLKEYLPGHRVACWL 323
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 226 bits (571), Expect = 2e-58
Identities = 120/261 (45%), Positives = 171/261 (64%), Gaps = 1/261 (0%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M ++KI+NL + F T G+ A++ VS + GEIL L+GE+G GK++ + A M LL
Sbjct: 1 MPSREVLKIDNLTVAFKTGDGLRTAVNSVSLSLHSGEILGLVGESGSGKTILSLAAMGLL 60
Query: 61 PRNAIVKGKII-YKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P NA+V G + + G +LL +RK+RGK IAMIFQDP+ SL+PVFT Q+ E
Sbjct: 61 PPNAVVAGGTVKFFGEDLLTARPDVLRKLRGKRIAMIFQDPMASLDPVFTCGSQIVESIL 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+H+ + + LL V I DPE+ + SYP ELSGG QRVMIAM ++ KP ++IA
Sbjct: 121 LHERVPRRNAHQRALDLLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMAVACKPDVIIA 180
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALDVT+Q Q++NL+ L ++ +ILLITH+ GV+ E+ADRV V+Y G ++E A
Sbjct: 181 DEPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVIYRGDMMEEAK 240
Query: 240 VEEIFDNPLHPYTQGLLRALP 260
++F P YT+ L+ ++P
Sbjct: 241 TTDLFAAPKSAYTKALIASMP 261
Score = 176 bits (442), Expect = 3e-43
Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 10/239 (4%)
Query: 24 KAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPER 83
+A+D VS DI + L+GE+GCGKS ++ +MRL+ N+ G I + G +L L
Sbjct: 328 RAVDDVSLDIPARSTVGLVGESGCGKSTLSRLVMRLMEPNS---GTIEFDGIDLTSLDRE 384
Query: 84 EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIV-KLLKMVKI 142
+R R + A++FQ+P SLNP T+ D + +H G + IV KLL V +
Sbjct: 385 RLRHAR-QNFALVFQNPYGSLNPRQTVTDLIAAPVDIH---AKGRDREAIVAKLLDAVGL 440
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
P ++ YP E SGG RQR++IA L+ +P LLI DE +ALDV++QAQ++NL+ +L+
Sbjct: 441 P--RDAMRRYPHEFSGGQRQRIVIARALALRPKLLICDEAVSALDVSVQAQVLNLLQDLQ 498
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR 261
++F+ + L ITH+ VV ++D + VM G++VE EE+FD+P YT+ LLRA+P+
Sbjct: 499 DEFDLTYLFITHDMSVVRHISDTIAVMQKGRIVETGTAEEVFDHPKDEYTRTLLRAVPK 557
>sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1361734|pir||G64208 oligopeptide transport
ATP-binding protein amiE - Mycoplasma genitalium
>gi|1045756|gb|AAC71297.1| (U39688) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Mycoplasma
genitalium]
Length = 402
Score = 224 bits (566), Expect = 8e-58
Identities = 128/353 (36%), Positives = 199/353 (56%), Gaps = 40/353 (11%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++ I +L+++F G++ A+ G+ + +G I+ ++GE+G GKSV+ K+I+ NA
Sbjct: 21 ILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFND-NAQ 79
Query: 66 VKGKII-YKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV---- 120
K K++ +K ++ +L + + + RG ++ I QDPL SLNP TI Q+ E V
Sbjct: 80 TKAKLMNFKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKR 139
Query: 121 ------------------------HKLPVVGSILDEIVK----------LLKMVKIPDPE 146
KL + + +K +L+ + I D +
Sbjct: 140 RYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAK 199
Query: 147 KRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFE 206
KR+K++P E SGGMRQR++IA+ ++ +P L+IADEPTTALDVTIQA+++ L+ +LR+
Sbjct: 200 KRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLN 259
Query: 207 TSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTE 266
+I+ I+HN ++A D V VMYAG++VE VEEIF NPLHPYT L+ ++P
Sbjct: 260 ITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPEQKDKN 319
Query: 267 RELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHL 319
+ L +IPG +PN+L PPKG F R + A + + P EV K H A L
Sbjct: 320 KPLTSIPGVIPNMLTPPKGDAFASRNQYALAIDFEYHPPFFEVTKTHKAATWL 372
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 224 bits (565), Expect = 1e-57
Identities = 124/324 (38%), Positives = 197/324 (60%), Gaps = 14/324 (4%)
Query: 4 EPLVKIENLYIDFITDRG-------VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAI 56
+ L+K+E+L + + G VV+A++ VSF ++ GE L ++GE+GCGKS A+ +
Sbjct: 3 DALLKVESLTKHYPIEAGWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLARLL 62
Query: 57 MRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE 116
MRL+ + G+++ +G ++ L + E+R R + + M+FQDP +SLNP T + E
Sbjct: 63 MRLIDPTS---GRVLVEGTDIAGLRKNELRAWR-RRMQMVFQDPYSSLNPRLTAGQIITE 118
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+ + + LL+ V + PE + YP E+SGG RQR+ IA L+ KPSL
Sbjct: 119 PVENFECLSRRQRQELATDLLRKVGM-SPEMASR-YPSEMSGGQRQRLGIARALALKPSL 176
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
+IADE +ALDV++QAQI+NL+++L+++ +++ I+H+ VV + RV VMY G++VE
Sbjct: 177 IIADEAVSALDVSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRVAVMYLGRIVE 236
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELE-NIPGRVPNLLNPPKGCRFHPRCKKA 295
++P + +F P+HPYT+ L+ A P LE + G VP+ +NPP GC FHPRC A
Sbjct: 237 LSPRDALFAKPVHPYTEALIAAAPVPDPARARLEVPLEGEVPSPVNPPSGCAFHPRCPLA 296
Query: 296 KEMCSKEKPKLIEVEKEHYVACHL 319
+ C E P L+ + VACH+
Sbjct: 297 VDRCRAEVPPLVPMPDGRAVACHV 320
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 224 bits (565), Expect = 1e-57
Identities = 124/330 (37%), Positives = 191/330 (57%), Gaps = 24/330 (7%)
Query: 1 MSGEPLVKIENLYIDFITDR-----------GVVKAIDGVSFDIRKGEILALIGETGCGK 49
M+ P + +E+L ++F R V+A+DGVS ++ GE L L+GE+G GK
Sbjct: 1 MTTVPALVVEDLVVEFAKSRTLADLVTRRPASAVRAVDGVSLSVQAGETLGLVGESGSGK 60
Query: 50 SVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFT 109
S +AI+ L N + G I + GR P R +R + + M+FQDP +SLNP
Sbjct: 61 STIGRAILGL---NEPLSGTIHFDGR-----PTHSRRDLR-RRMQMVFQDPYSSLNPRLK 111
Query: 110 IEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMM 169
I D +GE+ + H + + E+ +LL +V + + P E+SGG RQR IA
Sbjct: 112 IGDAIGEVLRFHSIVPKQDVDREVRRLLSLVGLS--AAMAERRPREMSGGQRQRAGIARA 169
Query: 170 LSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVM 229
L+ +P L+ DEP ALDV+IQAQI+NL+ +LR++ ++L I H GVV M+DR+ V+
Sbjct: 170 LALRPDFLVLDEPVAALDVSIQAQILNLLTDLRQELGLTMLFIAHGLGVVRHMSDRIAVL 229
Query: 230 YAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENI-PGRVPNLLNPPKGCRF 288
Y G+++E+ P +F++ HPYT+ LL A+P + +R+ + G VP+ LN P GCRF
Sbjct: 230 YLGKIMEVGPAHAVFESSRHPYTKALLSAVPEINLVKRQRPPVTQGDVPSPLNVPSGCRF 289
Query: 289 HPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
RC A+++C K +P + V +H+ CH
Sbjct: 290 RTRCPVAQDIC-KTQPPEVPVGPDHFSRCH 318
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 223 bits (563), Expect = 2e-57
Identities = 116/297 (39%), Positives = 187/297 (62%), Gaps = 8/297 (2%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
V+A++GVSF++ G+ LA++GE+GCGKS A+A+ + G + G+ + +
Sbjct: 27 VRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLI---EEPTSGSLKIAGQEVKGASK 83
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKI 142
+ R++R +++ M+FQ+P SLNP I DQ+ E ++ +++ ++++ V +
Sbjct: 84 DQRRQLR-RDVQMVFQNPYASLNPRQKIGDQLAEPLLINTALSREERREKVQQMMRQVGL 142
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
PE + YP SGG RQR+ +A + +P +L+ADEPT+ALDV+IQAQ++NL ++L+
Sbjct: 143 R-PE-HYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDLQ 200
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRG 262
++F T+ + I+HN VV +AD V+VMY G+ E+ P +++++NPLHPYT+ LL A P
Sbjct: 201 QQFRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGPADKLYENPLHPYTRALLSATPAI 260
Query: 263 HKTERELE-NIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
H + + I G +PN LNPP+GC FH RC A E C E P+L + + VACH
Sbjct: 261 HPDPTKPKIRIQGELPNPLNPPEGCAFHKRCPYATERCRSEVPEL-RLLDQRQVACH 316
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 222 bits (561), Expect = 3e-57
Identities = 123/322 (38%), Positives = 203/322 (62%), Gaps = 12/322 (3%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E ++ + +L I + T G VKA+DGVSFDI++GEIL + GE+GCGKS ++ L P
Sbjct: 6 EVVLDVRDLRIYYRTLYGYVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLILLKPPM 65
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH-- 121
+ G+ I G+N++ L +E+RK+R ++I++I Q + ++NP I+ + ++ H
Sbjct: 66 KYMGGEAILDGKNIMALSPKELRKVRYEKISIIPQYAMDAMNPTKKIKQIIDDLLHEHGE 125
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+++E ++++ + K K + YP ELSGGM+QR+++ + P +LIADE
Sbjct: 126 SFERKKDVIEERLEIVNLGK-----KVLNMYPIELSGGMKQRMVMVISTLMNPDVLIADE 180
Query: 182 PTTALDVTIQAQIMNLMLELREK-FETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
T+ALDV+ Q ++ ++ E+REK S+ ITH+ V+ ++AD+V+V+YAG+V EI+P+
Sbjct: 181 ITSALDVSSQRSVIQMLYEMREKEIMGSLAFITHDLSVLYQIADKVMVLYAGRVAEISPM 240
Query: 241 EEIFDNPLHPYTQGLLRALPR--GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEM 298
E+I PLHPYT+ LL +LP+ ++ +L+ IPG P+LLN GCRF RC A E
Sbjct: 241 EDIIQEPLHPYTKMLLSSLPKIGVRYSQTKLKGIPGYPPSLLNIGPGCRFRDRCPYAFEK 300
Query: 299 CSKEKPKLIEVEKEHYVACHLY 320
C ++ P + +V+ V+C L+
Sbjct: 301 CEQD-PPVFDVDGRK-VSCWLF 320
>gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-binding; OppD1
[Halobacterium sp. NRC-1]
Length = 267
Score = 222 bits (560), Expect = 4e-57
Identities = 121/254 (47%), Positives = 166/254 (64%), Gaps = 17/254 (6%)
Query: 76 NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH-----KLPVVGSIL 130
+L L E ++ +RGK I+ IFQ+P LNPV+T+ Q+GE ++H ++PV ++
Sbjct: 2 DLTTLSETALQDVRGKRISHIFQNPQNGLNPVYTVGRQIGEAIRIHDHGDPEVPVQRQVV 61
Query: 131 DEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTI 190
D LL IP+ RV YP E SGGM+QRV+IAM L+ P LLIADEPTTALDVTI
Sbjct: 62 D----LLDKTGIPEASARVDDYPHEFSGGMKQRVLIAMALACDPDLLIADEPTTALDVTI 117
Query: 191 QAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHP 250
Q QI+ L+ +L+ + + I+ +TH+ GVV+E+ADRVVVMYAG+V+E VE+IF NP HP
Sbjct: 118 QGQILRLLEDLQAEHDMGIIFVTHDLGVVSEIADRVVVMYAGKVMETGTVEDIFRNPSHP 177
Query: 251 YTQGLLRALP-RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMC-SKEKPKLIE 308
YT+ L+ LP RG +R I G +P++ +PP GCRF PRC+ A E C S ++P L
Sbjct: 178 YTRALMDCLPGRGGSMDR----IEGSLPDVTDPPAGCRFSPRCEHATEACRSGDQPPLWG 233
Query: 309 VE--KEHYVACHLY 320
V+ H +C Y
Sbjct: 234 VDDGDTHEASCVYY 247
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 222 bits (559), Expect = 6e-57
Identities = 131/320 (40%), Positives = 197/320 (60%), Gaps = 8/320 (2%)
Query: 7 VKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIV 66
+++ +L I + +G ++AI+ V F + KG+ L +IGETG GK+ A AIMR LP NA
Sbjct: 3 LQVRDLNISYKIGKGSIRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALPENAEY 62
Query: 67 KGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
G I + +++L++ + RK IR K+I++I Q + + NP+ + +Q+ ++ + +
Sbjct: 63 SGSIFFNNKDILKMDQETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMMENDSNI 122
Query: 126 VGSILDE-IVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
S E I L + +P PE K P ELSGG RQRV+IA L P L+IADEPTT
Sbjct: 123 DTSKASERIFYLFNQLSLP-PEI-YKKLPDELSGGQRQRVVIASALLLDPELVIADEPTT 180
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDV QA++++L+ + +++ ITH+ VVA +A +V+ +YAG+++E +IF
Sbjct: 181 ALDVINQARVISLIKREIVDKQKTLIYITHDIAVVAGVAKKVLTLYAGEIMEFGDSRKIF 240
Query: 245 DNPLHPYTQGLLRALP--RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
PLHPY++GLL ++P R K +++ IPG P+L KGC F PRC AK++C E
Sbjct: 241 KEPLHPYSKGLLSSVPDIRFGKV-KKVHYIPGDPPDLSKEIKGCPFAPRCSIAKDICKVE 299
Query: 303 KPKLIEVEKEHYVACHLYGG 322
KPKL V+ YVACHL GG
Sbjct: 300 KPKLRYVD-GRYVACHLVGG 318
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 222 bits (559), Expect = 6e-57
Identities = 118/307 (38%), Positives = 189/307 (61%), Gaps = 21/307 (6%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
V+A+D VSF++ +GEI++LIGE+G GK+ K I+RLL + G+I+++G ++
Sbjct: 24 VRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLKPTS---GRILFRGEDIWSFDR 80
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKL-LKMVK 141
++R+ K + +FQDP S NP+ ++ +F+ V +E++K L+ V
Sbjct: 81 EKLRRYYYKNVQAVFQDPFASFNPLHKVDRVFDLVFRNFLRGVAPGEREELIKRSLESVG 140
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
+ +P + + YP +LSGG QR++IA L +PSLLIADE + LD + + I+NL+ E
Sbjct: 141 L-NPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDILNLLGEF 199
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP- 260
R+KF TS++ ITH+ + ++D++V+MY G++VE E +F NPLHPYT+ LL ++P
Sbjct: 200 RDKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVFGNPLHPYTRMLLESVPD 259
Query: 261 -------RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEH 313
+G + ERE E + KGCRF PRC A++ C ++ P+ IE+EK H
Sbjct: 260 LSVRWEFKGIEPEREEERV--------YEIKGCRFAPRCPYARKECYEKPPQTIEIEKNH 311
Query: 314 YVACHLY 320
+VAC+LY
Sbjct: 312 HVACYLY 318
>sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YEJF
>gi|7445954|pir||C64987 probable oligopeptide transport
protein yejF - Escherichia coli
>gi|405909|gb|AAA16379.1| (U00008) yejF [Escherichia
coli] >gi|1788506|gb|AAC75241.1| (AE000307) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 529
Score = 221 bits (557), Expect = 1e-56
Identities = 121/261 (46%), Positives = 167/261 (63%), Gaps = 2/261 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ L+ IENL + F + V ++ VS I GE LAL+GE+G GKSVTA +I+RLLP
Sbjct: 3 QTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 64 AI--VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ + G I + G +LL ++ +R +RG +IAMIFQ+P+ SLNP+ T+E Q+ E+ +H
Sbjct: 63 PVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH 122
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ + EI+ L V I KR+ YP +LSGG RQRVMIAM L +P LLIADE
Sbjct: 123 RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDV++QAQI+ L+ EL+ + +L ITHN +V ++A RV VM G+ VE
Sbjct: 183 PTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAA 242
Query: 242 EIFDNPLHPYTQGLLRALPRG 262
+F +P HPYTQ LL + P G
Sbjct: 243 TLFASPTHPYTQKLLNSEPSG 263
Score = 165 bits (413), Expect = 7e-40
Identities = 100/259 (38%), Positives = 153/259 (58%), Gaps = 15/259 (5%)
Query: 6 LVKIENLYIDFITDRGVVKAI-------DGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
L+ +E L + F +G++K I +SF +R GE L L+GE+G GKS T A++R
Sbjct: 275 LLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR 334
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
L+ +G II+ G+ L L R++ IR + I ++FQDP +SLNP + + E
Sbjct: 335 LINS----QGSIIFDGQPLQNLNRRQLLPIRHR-IQVVFQDPNSSLNPRLNVLQIIEEGL 389
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIP-DPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+VH+ P + + E + M ++ DPE R + YP E SGG RQR+ IA L KPSL+
Sbjct: 390 RVHQ-PTLSAAQREQQVIAVMHEVGLDPETRHR-YPAEFSGGQRQRIAIARALILKPSLI 447
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
I DEPT++LD T+QAQI+ L+ L++K + + L I+H+ VV + +V+++ G+VVE
Sbjct: 448 ILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQ 507
Query: 238 APVEEIFDNPLHPYTQGLL 256
P +F P YT+ LL
Sbjct: 508 GPCARVFATPQQEYTRQLL 526
>dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 370
Score = 221 bits (557), Expect = 1e-56
Identities = 121/261 (46%), Positives = 167/261 (63%), Gaps = 2/261 (0%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ L+ IENL + F + V ++ VS I GE LAL+GE+G GKSVTA +I+RLLP
Sbjct: 3 QTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 64 AI--VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ + G I + G +LL ++ +R +RG +IAMIFQ+P+ SLNP+ T+E Q+ E+ +H
Sbjct: 63 PVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH 122
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ + EI+ L V I KR+ YP +LSGG RQRVMIAM L +P LLIADE
Sbjct: 123 RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PTTALDV++QAQI+ L+ EL+ + +L ITHN +V ++A RV VM G+ VE
Sbjct: 183 PTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAA 242
Query: 242 EIFDNPLHPYTQGLLRALPRG 262
+F +P HPYTQ LL + P G
Sbjct: 243 TLFASPTHPYTQKLLNSEPSG 263
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 220 bits (556), Expect = 1e-56
Identities = 121/313 (38%), Positives = 192/313 (60%), Gaps = 8/313 (2%)
Query: 8 KIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVK 67
KI+N F +KA+ VSF + GE L ++GE+GCGKS A+AI+ L+ + +
Sbjct: 21 KIKNDKSLFFAKPQTLKAVKDVSFKLYAGETLGVVGESGCGKSTLARAIIGLVEAS---E 77
Query: 68 GKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVG 127
G+I++ G++L + ++ ++ R K+I MIFQDPL SLNP I + + E K+++ +
Sbjct: 78 GEILWLGKHLRKQSAKQWKETR-KDIQMIFQDPLASLNPRMNIGEIIAEPLKIYQPHLSA 136
Query: 128 SILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALD 187
+ + E V+ + M+K+ + YP E SGG QR+ IA L +P ++I DEP +ALD
Sbjct: 137 AEVKEKVQAM-MLKVGLLPNLINRYPHEFSGGQCQRIGIARALIIEPKMIICDEPVSALD 195
Query: 188 VTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNP 247
V+IQAQ++NL+ L+++ S++ I H+ VV ++DRV+VMY G +E+ E++++
Sbjct: 196 VSIQAQVVNLLKSLQKEMGLSLIFIAHDLAVVKHISDRVLVMYLGNAMELGSDVEVYNDT 255
Query: 248 LHPYTQGLLRALP-RGHKTER--ELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
HPYT+ L+ A+P K ER +E + G +P+ +NPP GC F RC KA E C+K+KP
Sbjct: 256 KHPYTKALMSAVPIPDPKLERNKSIELLEGDLPSPINPPSGCVFRTRCLKADENCAKQKP 315
Query: 305 KLIEVEKEHYVAC 317
H+VAC
Sbjct: 316 PFTSQNNSHFVAC 328
>dbj|BAB04289.1| (AP001509) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 276
Score = 220 bits (554), Expect = 2e-56
Identities = 109/256 (42%), Positives = 175/256 (67%), Gaps = 1/256 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++K+ NL + +D+G++ + G+ F++++G++L L+GE+G GK++T +I++LL R
Sbjct: 8 VLKVRNLNVKVKSDQGMLPLVQGLQFELKRGKVLGLVGESGSGKTMTCMSILQLLDRKTT 67
Query: 66 -VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
++G I +GR L L +MR IRG+EI I Q+P+ + +PVFTI +Q E + H
Sbjct: 68 CIEGSIQLQGRELNGLKAEDMRTIRGREIGYIMQNPMNAFSPVFTIGNQFIETIRTHTEL 127
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+ V ++ V +P P + ++ YPF+LSGGM QRVMIA+ + +PS++IADEPTT
Sbjct: 128 TKRQAFELAVASMETVHLPKPSELMRRYPFQLSGGMLQRVMIAISMCLRPSVVIADEPTT 187
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
ALDVT Q Q++ + LR + +++ILLI+H+ GV+AE+AD V VM+ G++VE A V ++F
Sbjct: 188 ALDVTNQLQVLKELDRLRLESDSAILLISHDLGVIAELADEVAVMHKGRIVEKADVFQLF 247
Query: 245 DNPLHPYTQGLLRALP 260
D+P H YT+ LL+A P
Sbjct: 248 DHPQHEYTKKLLQARP 263
>pir||B83389 probable ATP-binding component of ABC transporter PA2061 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948069|gb|AAG05449.1|AE004632_8 (AE004632) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 219 bits (553), Expect = 3e-56
Identities = 112/257 (43%), Positives = 171/257 (65%), Gaps = 4/257 (1%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+++ENL + + G + + G+ F +R GE LAL+GE+G GKS TA A++RLLP A
Sbjct: 5 LLRVENLSVAY----GDTQVVKGIDFSLRAGETLALVGESGSGKSQTAHALLRLLPGAAR 60
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
+ G + G LL L + + IRG+ I M+FQ+P+TSLNP+ I Q+GE ++H+
Sbjct: 61 LGGSVRLDGEELLALSPQALLAIRGQRIGMVFQEPMTSLNPLQRIGRQVGEGLRLHRRLR 120
Query: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
++ +++LL++ + P + +++YP +LSGG RQRVM+AM L+ +P LLIADEPTTA
Sbjct: 121 GAALRGRVLELLELAGLEQPRRLLEAYPHQLSGGQRQRVMLAMALACEPQLLIADEPTTA 180
Query: 186 LDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFD 245
LDVT+Q +++ L+ L+ + +ILLI+H+ +V +ADRV VM GQ+VE E +F
Sbjct: 181 LDVTVQKRLLELLQSLQRRLGMAILLISHDLNLVRRVADRVCVMRDGQIVEENACETLFR 240
Query: 246 NPLHPYTQGLLRALPRG 262
+P HPYT+ L+ A P G
Sbjct: 241 SPRHPYTRLLIEAEPGG 257
Score = 166 bits (416), Expect = 3e-40
Identities = 91/263 (34%), Positives = 155/263 (58%), Gaps = 13/263 (4%)
Query: 4 EPLVKIENLYIDF------ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM 57
E +++ L +D+ + R ++A+ VS +R+G L ++GE+G GKS +A++
Sbjct: 266 ETCLEVRALSLDYPAPGGWLRRRAGLRAVHEVSLRLRRGSTLGIVGESGSGKSSLGQALL 325
Query: 58 RLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
RLLP +G+I+++G L L + + +R ++ +FQDP SLNP ++E +GE
Sbjct: 326 RLLP----AEGQILFQGERLDRLHGKRLLPLR-RQFQAVFQDPYGSLNPRLSVEQIVGEG 380
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
++H + G +++ L+ V + +P ++ YP E SGG RQR+ IA L KP+L+
Sbjct: 381 LRIHGIGDAGERRARVLEALREVGLDEP--CLERYPHEFSGGQRQRIAIARTLVLKPALI 438
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEPT+ALD ++Q Q++ L+ L+ + S L I+H+ VV +A ++V+ G+VVE
Sbjct: 439 LLDEPTSALDRSVQCQVVELLRRLQRRHGLSYLFISHDLAVVRALAHDILVLKDGRVVEQ 498
Query: 238 APVEEIFDNPLHPYTQGLLRALP 260
+F P HPYT+ LL A+P
Sbjct: 499 GSAAALFSQPRHPYTRELLGAIP 521
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 219 bits (552), Expect = 4e-56
Identities = 115/296 (38%), Positives = 179/296 (59%), Gaps = 7/296 (2%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
VKA+DGVSF + +G+ LA++GE+GCGKS + + + KG++ YKG N LE +
Sbjct: 34 VKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLTMI---EEPTKGELYYKGHNFLE-ND 89
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKI 142
E + +R K+I ++FQ+P SLNP I + E ++ ++++ +++ V +
Sbjct: 90 SETKALRRKKIQIVFQNPYASLNPRKKIGSILEEPLIINTKLSAKERREKVLSMMEKVGL 149
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
+ YP SGG RQR+ IA L P +++ADEP +ALDV+++AQ++NLM++L+
Sbjct: 150 R--AEFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVADEPVSALDVSVRAQVLNLMMDLQ 207
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR- 261
++ S + I+H+ VV +AD V+VMY G+ +E E+IF NP HPYT+ LL A PR
Sbjct: 208 DELGLSYVFISHDLSVVEHIADEVMVMYLGRCIEKGTTEQIFSNPQHPYTKALLSATPRL 267
Query: 262 GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVAC 317
RE + G +P+ +NPPKGC F+PRC KA E C + +P L + +AC
Sbjct: 268 SPNLRRERIKLTGELPSPINPPKGCAFNPRCWKATEKCRENQPHLEQHTDGKLIAC 323
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 219 bits (551), Expect = 5e-56
Identities = 123/352 (34%), Positives = 195/352 (54%), Gaps = 38/352 (10%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++ I +L++ F G+++A+ GV ++KG I+ ++GE+G GKSV K+I+
Sbjct: 21 ILDIRDLHVSFKVKDGIMQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDGAKT 80
Query: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV----- 120
+ +K ++ ++ + + + RG ++ I QDPL SLNP TI Q+ E V
Sbjct: 81 TAKLMNFKNIDISKMKKHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIYVSCKRR 140
Query: 121 -----------------------HKLPVV----------GSILDEIVKLLKMVKIPDPEK 147
KL ++ + +++L + I EK
Sbjct: 141 YYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEK 200
Query: 148 RVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFET 207
R+K++P E SGGMRQR++IA+ ++ +P L+IADEPTTALDVTIQA+ +NL+ +LR+
Sbjct: 201 RLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNI 260
Query: 208 SILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTER 267
+I+ I+HN ++A D V VMYAG++VE VEEIF NP+HPYT L+ ++P G
Sbjct: 261 TIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIPEGTDKNA 320
Query: 268 ELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHL 319
L +IPG +PN+L+PPKG F R + A + + +P +V + H A L
Sbjct: 321 PLTSIPGYIPNMLSPPKGDAFAARNQFALAIDFEHQPPFFDVTETHKAATWL 372
>pir||C82442 probable peptide ABC transporter, ATP-binding protein VCA0588
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9657999|gb|AAF96490.1| (AE004389) peptide ABC
transporter, ATP-binding protein, putative [Vibrio
cholerae]
Length = 530
Score = 218 bits (549), Expect = 8e-56
Identities = 120/259 (46%), Positives = 166/259 (63%), Gaps = 2/259 (0%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
++KI+NL + F +GVS I +GE LAL+GE+G GKSVTA AI+RLLP+ +
Sbjct: 5 VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
Query: 66 --VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+ G I + + L ER +R IRG I MIFQ+P+ SLNP+ I Q+ E +H+
Sbjct: 65 HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ + ++ L V I PE ++ +YP ELSGG RQRVMIAM L +P LLIADEPT
Sbjct: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
TALDV++QAQI++L+ L+++ ++L ITH+ +V +ADRV VM +GQ+VE +
Sbjct: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
Query: 244 FDNPLHPYTQGLLRALPRG 262
F P HPYTQ L+ A PRG
Sbjct: 245 FAAPAHPYTQQLINADPRG 263
Score = 171 bits (429), Expect = 1e-41
Identities = 93/242 (38%), Positives = 149/242 (61%), Gaps = 7/242 (2%)
Query: 16 FITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGR 75
F + +KA+ +SF + KG+ L L+GE+G GKS T AI++LL +G I + G+
Sbjct: 292 FRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLAS----QGAIRFAGQ 347
Query: 76 NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVK 135
+L L REM R K + ++FQDP ++LNP ++ +GE +VH I I
Sbjct: 348 DLQALKRREMLPYRSK-MQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICA 406
Query: 136 LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIM 195
+++ V + D + R + YP E SGG RQR+ IA L KP ++ DEPT++LD T+QAQ++
Sbjct: 407 VMQEVGL-DVDTRHR-YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVL 464
Query: 196 NLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGL 255
+L+ +L++K++ + L I+H+ V+ + +VM AG++VE + +F+NP HPYTQ L
Sbjct: 465 DLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQL 524
Query: 256 LR 257
+R
Sbjct: 525 VR 526
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 217 bits (547), Expect = 1e-55
Identities = 121/318 (38%), Positives = 184/318 (57%), Gaps = 19/318 (5%)
Query: 13 YIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIY 72
Y D V A DG+ I +GE + L+GE+GCGKS + I++L A G+I +
Sbjct: 75 YSDLHGQNLCVIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKPTA---GEIFF 131
Query: 73 KGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH-----KLPVVG 127
+G N+ +M +R K++ +IFQDP +SLNP T+ +GE H K P
Sbjct: 132 EGENITNYTVTQMMPLR-KKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAYE 190
Query: 128 SILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALD 187
+ EI+ + + + YP E SGG RQR+ IA L+ KP ++ DE +ALD
Sbjct: 191 KYVKEIMNTCGLA-----DYMIYRYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALD 245
Query: 188 VTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNP 247
V+IQ+QI+NL+ +L+++F S L I+H+ VV ++DR+ VMY G +VE E++ NP
Sbjct: 246 VSIQSQIINLLNDLQKEFNLSYLFISHDLSVVKHISDRIGVMYLGNMVEFTDKREMYANP 305
Query: 248 LHPYTQGLLRALP----RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
LHPYT+ LL A+P + +T+R + + G +P+ + P GC+FH RC AK++C +E
Sbjct: 306 LHPYTKVLLSAIPETDLQKMRTKRRI-LLEGDIPSNIITPTGCKFHTRCPIAKDICKREI 364
Query: 304 PKLIEVEKEHYVACHLYG 321
P+ E + H+VACH G
Sbjct: 365 PQFKEEKPGHFVACHFSG 382
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 217 bits (546), Expect = 2e-55
Identities = 129/325 (39%), Positives = 192/325 (58%), Gaps = 15/325 (4%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN- 63
PL+ I NL I+F T G VKA+D VS + +GEI L+GE+G GKS+ AKAI + N
Sbjct: 2 PLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKDNW 61
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE-----MF 118
+ ++ + +LL L RE RK+ G ++MIFQ+P + L+P + Q+ + +
Sbjct: 62 RVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTY 121
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
K +G ++LL V I D ++ ++S+P+EL+ G Q+VMIA+ L+ +P LLI
Sbjct: 122 KGRWWQRLGWRKRRAIELLHRVGIKDHKEPMRSFPYELTDGECQKVMIAIALANQPRLLI 181
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPT +++ T QAQI L+ L + T+ILLI+H+ ++++ AD++ V+Y GQ VE A
Sbjct: 182 ADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Query: 239 PVEEIFDNPLHPYTQGLLRALP-----RGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
P +++ P HPYTQ L+RA+P HK+ L +PG +P L P GCR PRC
Sbjct: 242 PSKDLVTMPHHPYTQALIRAIPDFGSAMPHKS--RLNTLPGAIPLLEQLPIGCRLGPRCP 299
Query: 294 KAKEMCSKEKPKLIEVEKEHYVACH 318
A+ C P+L K H ACH
Sbjct: 300 YAQRECI-ITPRLTGA-KNHLYACH 322
>pir||T35982 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464267|emb|CAB37470.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 398
Score = 216 bits (545), Expect = 2e-55
Identities = 119/303 (39%), Positives = 173/303 (56%), Gaps = 4/303 (1%)
Query: 17 ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRN 76
+T G A+ GV + GE L + GE+GCGKS A A++RLLP A V G+I+ G +
Sbjct: 11 VTYPGGAAAVRGVDLTLAAGEKLGVAGESGCGKSTLALALLRLLPPGARVGGEILLDGED 70
Query: 77 LLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKL 136
+L + +R +R +++FQ + SLN V + DQ+ E +H+ +L
Sbjct: 71 VLTMKWGRVRAVRWAGASIVFQGAMHSLNAVHRVGDQIAEPILLHRRTTAAGARRRAGEL 130
Query: 137 LKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMN 196
L+ V +P R +YP ELSGG RQRVMIAM L+ P L++ADEPTTALDV IQAQI+
Sbjct: 131 LEQVGLP--AARASAYPHELSGGQRQRVMIAMALACDPRLIVADEPTTALDVMIQAQILR 188
Query: 197 LMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLL 256
L+ L + + +++I+H+ V+A+ DR+ VMYAG+VVE P +++D+ HPY + L
Sbjct: 189 LIEGLVGEQDVGLIMISHDLAVLADTCDRLAVMYAGRVVEEGPARQVYDDARHPYGRALS 248
Query: 257 RALPR-GHKTER-ELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHY 314
A P G R +PG P+ P GC FHPRC A ++C+ + L +
Sbjct: 249 EAFPTIGDPASRFAPRGLPGDPPDPAAVPSGCAFHPRCPVALDLCATQDQPLRDAGARRR 308
Query: 315 VAC 317
AC
Sbjct: 309 AAC 311
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 215 bits (541), Expect = 7e-55
Identities = 117/298 (39%), Positives = 181/298 (60%), Gaps = 9/298 (3%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
+KA+DGV+ + +GE L ++GE+GCGKS A+AI+ L+ G + + G+ LL +
Sbjct: 37 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGHVAWLGKELLGMKP 93
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKI 142
E R +R +I MIFQDPL SLNP TI + + E + + + + E VK + M+K+
Sbjct: 94 DEWRAVRS-DIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAM-MLKV 151
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
+ YP E SGG QR+ IA L +P L+I DEP +ALDV+IQAQ++NL+ +L+
Sbjct: 152 GLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 211
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP-- 260
+ S++ I H+ VV ++DRV+VMY G VE+ +E++ NPLHPYT+ L+ A+P
Sbjct: 212 REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIP 271
Query: 261 -RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVAC 317
+ + ++ + G +P+ +NPP GC F RC A C+K +P ++E H V+C
Sbjct: 272 DPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRP-VLEGSFRHSVSC 328
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 214 bits (539), Expect = 1e-54
Identities = 118/298 (39%), Positives = 183/298 (60%), Gaps = 9/298 (3%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
+KA+DGV+ + +GE L ++GE+GCGKS A+AI+ L+ G++++ G++L + E
Sbjct: 40 LKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQAT---HGEVVWLGQDLTRMQE 96
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKI 142
+ R R K+I MIFQDPL SLNP T+ D + E + + + + VK + M K+
Sbjct: 97 VKRRATR-KQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEM-MAKV 154
Query: 143 PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELR 202
+ YP E SGG QR+ IA L KP ++I DEP +ALDV+IQAQ++NL+ EL+
Sbjct: 155 GLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQ 214
Query: 203 EKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP-- 260
++ S++ I H+ VV ++DRV+VMY G VE+ +E+F NP HPYT+ L+ A+P
Sbjct: 215 KELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKHPYTKALMSAVPIP 274
Query: 261 -RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVAC 317
+ + ++ + G +P+ +NPP GC F RC +A C+K KP +I+ H V+C
Sbjct: 275 DPNIERNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAECAKTKP-VIKGSDIHSVSC 331
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 213 bits (537), Expect = 2e-54
Identities = 112/258 (43%), Positives = 168/258 (64%), Gaps = 6/258 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E L++I++L F+T RG VKA+D +SFDI KGE L L+GE+GCGKS T ++I+RL
Sbjct: 6 EKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEAT 65
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G++++ G N+ R+ +++ MIFQDP SLNP T+ D + E +HKL
Sbjct: 66 ---DGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKL 122
Query: 124 PVVGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ + +LL+ V + ++ YP E SGG RQR+ IA L+ P +IADEP
Sbjct: 123 AKTKKERMQRVHELLETVGLN--KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEP 180
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
+ALDV+IQAQ++NLM EL+++ + L I H+ +V ++DR+ VMY G++VE+AP +E
Sbjct: 181 ISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADE 240
Query: 243 IFDNPLHPYTQGLLRALP 260
+++NPLHPYT+ LL A+P
Sbjct: 241 LYENPLHPYTKSLLSAIP 258
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 213 bits (537), Expect = 2e-54
Identities = 112/258 (43%), Positives = 168/258 (64%), Gaps = 6/258 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E L++I++L F+T RG VKA+D +SFDI KGE L L+GE+GCGKS T ++I+RL
Sbjct: 3 EKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEAT 62
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G++++ G N+ R+ +++ MIFQDP SLNP T+ D + E +HKL
Sbjct: 63 ---DGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKL 119
Query: 124 PVVGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ + +LL+ V + ++ YP E SGG RQR+ IA L+ P +IADEP
Sbjct: 120 AKTKKERMQRVHELLETVGLN--KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEP 177
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
+ALDV+IQAQ++NLM EL+++ + L I H+ +V ++DR+ VMY G++VE+AP +E
Sbjct: 178 ISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADE 237
Query: 243 IFDNPLHPYTQGLLRALP 260
+++NPLHPYT+ LL A+P
Sbjct: 238 LYENPLHPYTKSLLSAIP 255
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 213 bits (537), Expect = 2e-54
Identities = 112/258 (43%), Positives = 168/258 (64%), Gaps = 6/258 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E L++I++L F+T RG VKA+D +SFDI KGE L L+GE+GCGKS T ++I+RL
Sbjct: 6 EKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEAT 65
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G++++ G N+ R+ +++ MIFQDP SLNP T+ D + E +HKL
Sbjct: 66 ---DGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKL 122
Query: 124 PVVGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ + +LL+ V + ++ YP E SGG RQR+ IA L+ P +IADEP
Sbjct: 123 AKTKKERMQRVHELLETVGLN--KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEP 180
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
+ALDV+IQAQ++NLM EL+++ + L I H+ +V ++DR+ VMY G++VE+AP +E
Sbjct: 181 ISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADE 240
Query: 243 IFDNPLHPYTQGLLRALP 260
+++NPLHPYT+ LL A+P
Sbjct: 241 LYENPLHPYTKSLLSAIP 258
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 213 bits (536), Expect = 3e-54
Identities = 133/333 (39%), Positives = 189/333 (55%), Gaps = 31/333 (9%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA 64
PL+ I +L I+ T +G+VKA+D +S + +GEI L+GE+G GKS+ AKAI+ + N
Sbjct: 2 PLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENW 61
Query: 65 IVKGKIIYKGR-NLLELPEREMRKIRGKEIAMIFQDPLTSLNP-------------VFTI 110
V + G +LL+L RE R++ +++AMIFQ+P T L+P T
Sbjct: 62 RVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTF 121
Query: 111 EDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMML 170
E + E F K + + LL V I D + + SYP+EL+ G Q+VMIAM +
Sbjct: 122 EGRWWERFTWRK--------KQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAI 173
Query: 171 SAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMY 230
+AKP LLIADEPT +D Q+QI+ L+ + + TSILLI H+ + + ADR+ VMY
Sbjct: 174 AAKPKLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMY 233
Query: 231 AGQVVEIAPVEEIFDNPLHPYTQGLLRALPR-----GHKTERELENIPGRVPNLLNPPKG 285
GQ VE A +I P HPYT LL+A+P HK ++L+++PG +P L + P G
Sbjct: 234 CGQSVESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHK--QKLQSLPGSIPPLQHLPIG 291
Query: 286 CRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
CR PRC A+ C E P V K H +CH
Sbjct: 292 CRLGPRCPYAQRQC-VEVPHSRWV-KNHKFSCH 322
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 212 bits (535), Expect = 4e-54
Identities = 119/324 (36%), Positives = 193/324 (58%), Gaps = 18/324 (5%)
Query: 6 LVKIENLYIDFITDRG---------VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAI 56
L++I +L + F G +KA+DGV+ + +GE L ++GE+GCGKS A+AI
Sbjct: 11 LLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 70
Query: 57 MRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE 116
+ L+ GK+ + G++LL + E R++R +I MIFQDPL SLNP TI + + E
Sbjct: 71 IGLVKAT---DGKVAWLGKDLLGMKADEWREVRS-DIQMIFQDPLASLNPRMTIGEIIAE 126
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+ + + + + VK + M+K+ + YP E SGG QR+ IA L +P L
Sbjct: 127 PLRTYHPKLSRQDVRDRVKAM-MLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL 185
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
+I D+ +ALDV+IQAQ++NL+ +L+ + S++ I H+ VV ++DRV+VMY G VE
Sbjct: 186 IICDDAVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 245
Query: 237 IAPVEEIFDNPLHPYTQGLLRALP---RGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
+ +E++ NPLHPYT+ L+ A+P + ++++ + G +P+ +NPP GC F RC
Sbjct: 246 LGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSGCVFRTRCP 305
Query: 294 KAKEMCSKEKPKLIEVEKEHYVAC 317
A C++ +P ++E H V+C
Sbjct: 306 IAGPECAQTRP-VLEGSFRHAVSC 328
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 212 bits (534), Expect = 5e-54
Identities = 124/318 (38%), Positives = 189/318 (58%), Gaps = 28/318 (8%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ LVK+ +Y V+A+D VS I G ++ ++GE+G GKS K ++ L
Sbjct: 23 DALVKVPKIY---------VRALDDVSISIMDGNVIGVVGESGSGKSTMGKVMVTL---E 70
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G++ +KG + + E KIR K++ M+FQ+P TSLNP ++D + E
Sbjct: 71 TPTDGELYFKGTRVTK---SEYPKIR-KQVDMVFQNPATSLNPKMKVKDIVSEPLGHFD- 125
Query: 124 PVVGSILDEIVKL-LKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
G+I + I+K+ L ++ D + R ELSGG QRV IA L KP LL+ DEP
Sbjct: 126 --EGAIKEVILKVGLSYDEVKDKQSR------ELSGGQVQRVAIARALMKKPELLVLDEP 177
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
T+ALD +IQAQ++NL+++L+ +++ + + ITHN V ++D +VV+YAG++VE P E
Sbjct: 178 TSALDESIQAQVLNLLVDLQTEYKMTYIFITHNILVAKYISDYIVVLYAGKIVEYGPTSE 237
Query: 243 IFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
+ PLHPYTQ LL ++P ++++ G VP+L+N P+GCRF+PRC E C KE
Sbjct: 238 VLSKPLHPYTQLLLSSVPT--VDVKDVKPPVGDVPSLINLPQGCRFNPRCPFVMEKCRKE 295
Query: 303 KPKLIEVEKEHYVACHLY 320
+P LI + + VAC LY
Sbjct: 296 EPPLISQGQNYQVACWLY 313
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 212 bits (533), Expect = 6e-54
Identities = 122/323 (37%), Positives = 182/323 (55%), Gaps = 9/323 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ L+K+ L + G V + V+F++ EI A+ GE+GCGKS A AI LL
Sbjct: 6 DSLLKVNELTAGYFNQDGFVIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLLKYP 65
Query: 64 AIV-KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
+V +G + K +++L + + E+RK+R KE + Q + +L+PV I DQM H
Sbjct: 66 GVVLRGHVYLKDKDILSITQEELRKLRMKEFVYVPQFAMDALDPVAKIGDQMMRAAVSH- 124
Query: 123 LPVVGSILDEIVKLLK--MVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
G ++E KL+K + + P V YP ELSGGMRQRV+IA + PSL+I D
Sbjct: 125 ----GVNVEEARKLIKEKLELVDLPYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILD 180
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPTT LDV +Q +I+ + ++ + S+++I+H+ ++ ++DRV +MYAG++VEI
Sbjct: 181 EPTTGLDVIVQYEILKDLKRIQRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSK 240
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNP-PKGCRFHPRCKKAKEMC 299
EEI P HPYT L+ +LP K +L +IPG P +L+ P CRF+ RC E C
Sbjct: 241 EEIIKRPSHPYTYLLISSLPSLVKRREKLLSIPGNPPLMLSKVPNSCRFYDRCPFKMEKC 300
Query: 300 SKEKPKLIEVEKEHYVACHLYGG 322
S P L ++ H C L G
Sbjct: 301 STLNPALGDIMDGHKARCFLQKG 323
Score = 166 bits (416), Expect = 3e-40
Identities = 94/244 (38%), Positives = 150/244 (60%), Gaps = 6/244 (2%)
Query: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
+ A++ VSF+++KG I AL+G +G GKS AK + ++ + + GKII G+++ E
Sbjct: 378 INAVNDVSFELKKGTITALVGGSGHGKSTIAKILAGMIQQTS---GKIILLGKDVSEYGV 434
Query: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK-LPVVGSILDEIVKLLKMVK 141
R + + + MIFQDP +SL+P T+ + +HK + +L +I+++LK V
Sbjct: 435 RNSMWYK-ENVQMIFQDPYSSLDPRHTVRWHVERPLLIHKKVSNKDQLLPKIIEVLKNVG 493
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
+ PEK + YP ELSGG RQRV IA + +P +L+ADEP + LD +++A I+NL+ +
Sbjct: 494 LKPPEKYLYKYPHELSGGERQRVAIARATAVEPKVLVADEPVSMLDASLRAGILNLIKKF 553
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR 261
+ K SIL ITH+ V +AD ++V+Y G++VE E+ NP H YT+ L+ A+P
Sbjct: 554 K-KNGISILYITHDIATVNYIADEIMVIYKGRIVEKGNTYEVISNPSHEYTKRLIEAVPD 612
Query: 262 GHKT 265
+KT
Sbjct: 613 PYKT 616
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 211 bits (532), Expect = 8e-54
Identities = 129/325 (39%), Positives = 189/325 (57%), Gaps = 15/325 (4%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN- 63
PL+ I NL I+F T VKA+D VS + +GEI L+GE+G GKS+ AKAI + N
Sbjct: 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNW 61
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE-----MF 118
+ ++ + +LL L RE RK+ G ++MIFQ+P + L+P + Q+ + +
Sbjct: 62 RVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTY 121
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
K G ++LL V I D + ++S+P+EL+ G Q+VMIA+ L+ +P LLI
Sbjct: 122 KGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI 181
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPT +++ T QAQI L+ L + T+ILLI+H+ ++++ AD++ V+Y GQ VE A
Sbjct: 182 ADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Query: 239 PVEEIFDNPLHPYTQGLLRALP-----RGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
P +E+ P HPYTQ L+RA+P HK+ L +PG +P L P GCR PRC
Sbjct: 242 PSKELVTMPHHPYTQALIRAIPDFGSAMPHKS--RLNTLPGAIPLLEQLPIGCRLGPRCP 299
Query: 294 KAKEMCSKEKPKLIEVEKEHYVACH 318
A+ C P+L K H ACH
Sbjct: 300 YAQRECI-VTPRLTGA-KNHLYACH 322
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 211 bits (531), Expect = 1e-53
Identities = 112/297 (37%), Positives = 172/297 (57%), Gaps = 5/297 (1%)
Query: 22 VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELP 81
VV+A+DGV IR+GE+LA++GE+GCGK+ KAI+ + + G I Y+G L
Sbjct: 40 VVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPS---DGAIYYRGELLTPHR 96
Query: 82 EREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVK 141
R++R K + M+FQDP SL+P+ + DQ+ E +H L V++L+ V
Sbjct: 97 LARDRRLRRK-LQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVG 155
Query: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
+ + P +LSGG RQRV IA L +P +++ADEP + +DV+++A I++L+++
Sbjct: 156 LTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDY 215
Query: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR 261
+ +I+LITH+ V +ADR+ VMY G++VE+ + +NP HPYT L+ + P
Sbjct: 216 HRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPS 275
Query: 262 GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
+ I G VP+ + P GCRFHPRC A +C +P L+E E ACH
Sbjct: 276 ISRRRPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCRSREPALVE-EGGRLYACH 331
>emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi]
Length = 330
Score = 210 bits (529), Expect = 2e-53
Identities = 125/324 (38%), Positives = 191/324 (58%), Gaps = 15/324 (4%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN-A 64
L++I N+ I+F+T G VKA+D VS ++ +GEI L+GE+G GKS+ AKAI + N
Sbjct: 3 LLEIRNVTIEFLTPDGPVKAVDRVSINLNEGEIRGLVGESGSGKSLIAKAICGINKENWR 62
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM-----GEMFK 119
I + + ++L+L + RK+ ++MIFQ+P + L+P + Q+ G +K
Sbjct: 63 ITADRFRFDDVDMLQLTPPQRRKLVRHNMSMIFQEPQSCLDPSARVGRQLIQSIPGWTYK 122
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
++LL V I D + ++S+P+EL+ G Q+VMIA+ L+ +P LLIA
Sbjct: 123 GRWWQRFNWRKRRAIELLHRVGIKDHKDVMRSFPYELTEGECQKVMIAIALANQPRLLIA 182
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEP A++ T QAQI L+ L + T+ILLI+H+ +++ ADR+ V+Y GQ VE A
Sbjct: 183 DEPNNAMEATTQAQIFRLLSRLNQNNNTTILLISHDLQTMSKWADRINVLYCGQTVESAV 242
Query: 240 VEEIFDNPLHPYTQGLLRALP-----RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKK 294
+E+ P HPYTQ L+RA+P HK+ L +PG +P+L + P GCR PRC
Sbjct: 243 SDELISAPHHPYTQALIRAMPDFGCSLPHKS--RLNTLPGAIPSLAHLPVGCRLGPRCPY 300
Query: 295 AKEMCSKEKPKLIEVEKEHYVACH 318
+++ C P LI V + H+ ACH
Sbjct: 301 SQKQC-MTAPPLIPV-RNHWYACH 322
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 209 bits (527), Expect = 3e-53
Identities = 121/320 (37%), Positives = 194/320 (59%), Gaps = 10/320 (3%)
Query: 6 LVKIENLYIDFITDRG---VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-P 61
++++ NL + I D G ++KA++ VSF + KGEIL +IGE+G GK+ AI+R + P
Sbjct: 45 ILEVHNLNV--IYDEGNSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIRP 102
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
I+ GK+I+ G ++ + E RK+ K+I+ + Q +LNPV I + H
Sbjct: 103 PGKIISGKVIFNGMDIFSMTIDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEAISH 162
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+++ +LLK+V + DP + +K YPF+LSGGM+QRVMIA+ L P L++ DE
Sbjct: 163 GEADKKRVIERASELLKLVGL-DPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLILMDE 221
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PT+ALD+ Q ++ L+ + ++ +I+ +TH+ +A++A+R++VMY G V+E E
Sbjct: 222 PTSALDMLNQELLLKLIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEEGKTE 281
Query: 242 EIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
EI +PL+PYT L+ ++P K E ++ N+P P L++ KGC F RC KA C +
Sbjct: 282 EIIKSPLNPYTSLLVSSIP-SLKGEVKVINVPLDEP-LVSKEKGCPFLARCSKAFGRCKE 339
Query: 302 EKPKLIEVEKEHYVACHLYG 321
E P+ I + + V CHLYG
Sbjct: 340 ELPE-IRLVYDRKVRCHLYG 358
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 209 bits (527), Expect = 3e-53
Identities = 117/327 (35%), Positives = 185/327 (55%), Gaps = 12/327 (3%)
Query: 4 EPLVKIENLYIDFITDRG----VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-R 58
E + ENL + G ++A+D VS + E+ + GE+GCGKS K +
Sbjct: 2 EKIAVAENLRAYYFIKSGDKTTSIRAVDNVSLHFFENEVYGIAGESGCGKSTLLKVLFGE 61
Query: 59 LLPRNAIVKGKIIYK----GRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
+ P +V G++++K + + +++KIR K ++ + Q ++ LNPV I
Sbjct: 62 IKPPLKLVDGEVVFKLDGEEYRINSMSLDQLKKIRWKYVSYVPQGSMSVLNPVRKIRRIF 121
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
++ + H I + + +P + + SYP +LSGGMRQRV IA+ P
Sbjct: 122 LDVIEEHTSMSREEAFSRIESYFEALGLP--VRVLDSYPHQLSGGMRQRVTIALATVLNP 179
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
++ ADEPTTALDV +Q ++ L+ ++ ++ + +++++TH+ GV A +A R+ VMYAG++
Sbjct: 180 KVIFADEPTTALDVVVQRGVIQLLKKIHKEQKNTLVIVTHDMGVHAHLATRIGVMYAGRL 239
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKK 294
+E A EIF NPLHPYT+ L+ +LPR R+ E PG P+L N P GC FHPRC
Sbjct: 240 IEEAETHEIFKNPLHPYTRFLINSLPRFGDRSRK-EGTPGSPPSLANLPSGCPFHPRCPI 298
Query: 295 AKEMCSKEKPKLIEVEKEHYVACHLYG 321
A ++C + +P LIEV + H VAC G
Sbjct: 299 ADQICMEMEPDLIEVARNHKVACWKVG 325
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 209 bits (526), Expect = 4e-53
Identities = 127/331 (38%), Positives = 189/331 (56%), Gaps = 27/331 (8%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA 64
PL+ I +L I+ T +G+VKA+D +S + +GEI L+GE+G GKS+ AKAI+ + N
Sbjct: 2 PLLDIRHLTIEIETPQGLVKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVSKDNW 61
Query: 65 IVKGKIIYKGR-NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTI------------- 110
+ + G +LL+L +E R++ ++IAMIFQ+P T L+P +
Sbjct: 62 RITADRMRLGNIDLLQLTPKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESIPSRAF 121
Query: 111 EDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMML 170
E + E FK K + + LL V I D ++ + SYP+EL+ G Q+VMIAM +
Sbjct: 122 EGKWWERFKWRK--------KQAIALLHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAI 173
Query: 171 SAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMY 230
+ KP LLIADEPT LD Q+QI+ L+ + + T+ILLI H+ + + A R+ VMY
Sbjct: 174 ATKPKLLIADEPTNDLDPITQSQILRLLSRMNQLNNTTILLIGHDLATITQWAGRITVMY 233
Query: 231 AGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGH---KTERELENIPGRVPNLLNPPKGCR 287
GQ VE A +I P HPYT LL+A+P + +++L+++PG +P L + P GCR
Sbjct: 234 CGQSVESADTSKIIAAPKHPYTDALLKAMPDFNDWVPHKQKLQSLPGSIPPLQHLPIGCR 293
Query: 288 FHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
PRC A++ C E P + K H CH
Sbjct: 294 LGPRCPYAQKQC-VEIPHTRRI-KNHKFNCH 322
>gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae]
Length = 330
Score = 208 bits (524), Expect = 7e-53
Identities = 130/327 (39%), Positives = 188/327 (56%), Gaps = 19/327 (5%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN- 63
PL+ I NL I+F T VKA+D VS + +GEI L+GE+G GKS+ AKAI + N
Sbjct: 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNW 61
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+ ++ + +LL L RE RK+ G ++MIFQ+P + L+P + Q+ M +
Sbjct: 62 RVTADRMRFDDIDLLGLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQL--MQNIPAW 119
Query: 124 PVVGSILDEIV-------KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
G V +LL V I D + ++S+P+EL+ G Q+VMIA+ L+ +P L
Sbjct: 120 TYKGRWWQRFVWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LIADEPT +++ T QAQI L+ L + T+ILLI+H+ ++++ AD++ V+Y GQ VE
Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
Query: 237 IAPVEEIFDNPLHPYTQGLLRALP-----RGHKTERELENIPGRVPNLLNPPKGCRFHPR 291
AP +E+ P HPYTQ L+RA+P HK+ L +PG +P L P GCR PR
Sbjct: 240 TAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKS--RLNTLPGAIPLLEQLPIGCRLGPR 297
Query: 292 CKKAKEMCSKEKPKLIEVEKEHYVACH 318
C A+ C P+L K H ACH
Sbjct: 298 CPYAQRECI-VTPRLTGA-KNHLYACH 322
>pir||S75333 oligopeptide transport protein oppF - Synechocystis sp. (strain
PCC 6803) >gi|1652324|dbj|BAA17247.1| (D90904)
oligopeptide transport ATP-binding protein OppF
[Synechocystis sp.]
Length = 650
Score = 208 bits (523), Expect = 9e-53
Identities = 130/330 (39%), Positives = 194/330 (58%), Gaps = 47/330 (14%)
Query: 25 AIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVK--GKIIYKGR------N 76
A+ GV F++ +GEIL ++GE+G GKSVT+ IM L+P+ V+ +I + + N
Sbjct: 59 AVKGVDFELERGEILGIVGESGSGKSVTSLGIMGLVPKPGWVEPSSEIDFFAQAQSSPVN 118
Query: 77 LLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKL 136
L+ LPE + R+ RG +IAMIFQ+P++SLNPV+TI Q+ E ++H+ ++ + L
Sbjct: 119 LVALPEGDKRQYRGGKIAMIFQEPMSSLNPVYTIGFQIIEAIRLHQNVTQEEAQNQAIAL 178
Query: 137 LKMVKI----------------PDPEKRV----------------KSYPFELSGGMRQRV 164
L+ V++ P +V K YP ELSGG QRV
Sbjct: 179 LQEVRVLPKDEVLEEEFLAQEQAQPRGKVTQNLASYIQQRKQSFLKRYPHELSGGQLQRV 238
Query: 165 MIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL-REKFETSILLITHNPGVVAEMA 223
MIAM +SA P LLIADEPTTALDVT+QA+I+ L+ +L ++ E S++ I+H+ GV+ E+A
Sbjct: 239 MIAMAISANPRLLIADEPTTALDVTVQAEILRLLRDLCKQHQEMSLIFISHDLGVINEIA 298
Query: 224 DRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIP--GRVPNLLN 281
DRV VMY G++VE E+I +P HPYT+GLL PR E +L+++P G N
Sbjct: 299 DRVAVMYRGEIVEQGLKEQILHSPQHPYTKGLLACRPR---LEIQLDHLPTVGDFLNADG 355
Query: 282 PPKGCRFHPRCKKAKEMCS-KEKPKLIEVE 310
PP + +++ + + KP L+EV+
Sbjct: 356 PPPSYQVITPAQESDRLAQLQAKPPLLEVQ 385
Score = 180 bits (453), Expect = 1e-44
Identities = 106/276 (38%), Positives = 168/276 (60%), Gaps = 15/276 (5%)
Query: 5 PLVKIENLYIDF-----ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
PL++++NL + + + V KA++ VSF + GE L L+GE+GCGKS A+A++RL
Sbjct: 380 PLLEVQNLTVSYGQGGLFGKKSVFKAVNDVSFQVYPGETLGLVGESGCGKSTLARALLRL 439
Query: 60 LPRNAIVKGKIIYKGRNLLELPER--EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
P I G+II+ G+N+ LPE+ + R++R +E+ +IFQ+P SLNP TI + E
Sbjct: 440 TP---IQTGRIIFDGQNVAALPEKSQQWRRLR-REMQIIFQNPYNSLNPRMTIGRAIQEP 495
Query: 118 FKVHK-LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
+H+ + +LL+ V I + YP ELSGG RQR+ IA L+ P
Sbjct: 496 LIIHEPKQSTKQQRQRVAELLERVGISP--QWFNRYPHELSGGQRQRICIARALALNPRF 553
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
+I DE +ALDV++QAQ++NL+ EL+ + + + I+H+ VV M DR++VM GQ+ E
Sbjct: 554 IICDESVSALDVSVQAQVLNLLKELQRDLQLTYIFISHDLSVVRFMGDRIMVMNRGQLAE 613
Query: 237 -IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELEN 271
I +EI +NP YT+ L++++PR +T L++
Sbjct: 614 PINTAQEIIENPQSAYTKKLIQSIPRFPETLNWLQS 649
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 207 bits (521), Expect = 2e-52
Identities = 120/329 (36%), Positives = 198/329 (59%), Gaps = 28/329 (8%)
Query: 4 EPLVKIENLYIDFIT--------DRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
E ++K+ENL F T ++ V A++ VSF++ K + L L+GE+GCGKS T ++
Sbjct: 6 EIILKVENLMQTFTTGEDFLFWKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKSTTLRS 65
Query: 56 IMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG 115
IM+L + G I + G+N+ +L ++E+ K + K++ M+FQDP TSL+P TI++ +
Sbjct: 66 IMQLYTPTS---GNIYFNGKNITKLSKKELLKTK-KDMQMVFQDPHTSLDPRMTIKEIIA 121
Query: 116 EMFKVHK----LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLS 171
E +++ LP +++ V L + + + + YP E SGG RQR+ IA L+
Sbjct: 122 EPLEIYNENKILPKTKQEIEQRVNELTDI-VGLHKSMLTRYPHEFSGGQRQRIGIARALA 180
Query: 172 AKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYA 231
P LL+ DE +ALDV+I+AQI+NL+ L+++F S L I+H+ VV M+D++ VMY
Sbjct: 181 LNPKLLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVKYMSDKIAVMYL 240
Query: 232 GQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPR 291
G ++E+AP E +F NP+HPYT+ L+ ++P + +R+ +NI L N K
Sbjct: 241 GVILELAPRETLFSNPIHPYTKMLIASIPEINPEKRKNKNIKLDEQTLANIRK------- 293
Query: 292 CKKAKEMCSKEKPKLIEVEKEHYVACHLY 320
+ ++ PKL EVEK+H+V+ +L+
Sbjct: 294 ----IHLSTQVHPKLEEVEKDHFVSKYLF 318
>emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 388
Score = 206 bits (519), Expect = 3e-52
Identities = 120/324 (37%), Positives = 187/324 (57%), Gaps = 7/324 (2%)
Query: 1 MSGEPLVKIENLYIDFITD-RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
+ ++K+ NL++ F + + + GV D+ +GEI+ L+GE+G GKSVT+K ++ +
Sbjct: 39 LKNNQILKVRNLHVSFPQGHKKSIHIVRGVDLDVHRGEIIGLVGESGSGKSVTSKTLINV 98
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREM-RKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
I +I L + +++ + IRG++I I QDPLTSLNP T+ Q+ +
Sbjct: 99 NESGIISADQIQIGEYELTNIKKQKYWQYIRGQKIGYIPQDPLTSLNPTRTVGKQLLDAL 158
Query: 119 KVH---KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
+ K + ++ LLK + EK +YP LSGGM+QR++I M+++ KP
Sbjct: 159 NNNEDWKNSTYTEKKNYLIGLLKTFGLRSAEKIFYAYPHTLSGGMKQRIVITMVVALKPE 218
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
L+IADEPTTALD T+QA ++ L ++R+K SI+LI+HN V+A+ D + VMYAG++V
Sbjct: 219 LIIADEPTTALDPTVQASVLALFEDIRQKMGISIILISHNISVIAKFCDYIYVMYAGRIV 278
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKA 295
E +EIF NP HPYT L+ A+P + +L I G P++ N P G F R A
Sbjct: 279 EKGTKQEIFTNPAHPYTWALISAIP--ESKDEKLYTIQGTPPDMANLPLGDPFVYRNDYA 336
Query: 296 KEMCSKEKPKLIEVEKEHYVACHL 319
E+ ++P LI + + H A L
Sbjct: 337 LEIDYLKEPPLIPITETHAAATWL 360
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 205 bits (517), Expect = 5e-52
Identities = 113/325 (34%), Positives = 192/325 (58%), Gaps = 23/325 (7%)
Query: 6 LVKIENLYIDF-----ITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+VK+ENL + F T + VVKA+DGV+ I++ EI+ ++GE+G GK+ + + L
Sbjct: 14 VVKVENLKVYFTKGGMFTKKYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGRVTIGLQ 73
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIA----MIFQDPLTSLNPVFTIEDQMGE 116
+ G + K N E + K + K+I+ MI+QDP +S++P+ + D +
Sbjct: 74 KPTS---GNVYIKADN----KEINVNKAKLKDISNYVQMIYQDPYSSIDPIMRVYDVLAT 126
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
K K+ + ++E ++L+ + P + +++ ++LSGG RQR+ IA + P
Sbjct: 127 PLKYKKMSDIDKKIEEAMRLVDL-----PLELLENRVYQLSGGQRQRLSIARAIVVNPKY 181
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
++ADEPTT LD +++ +I+ ++ + RE S + ITH + ++DR++V+Y G++VE
Sbjct: 182 IVADEPTTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGKIVE 241
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERE-LENIPGRVPNLLNPPKGCRFHPRCKKA 295
+ EI NPLHPYTQGL+ PR + R+ ++ I +V +++ P KGC F+PRC A
Sbjct: 242 LGNSNEIIKNPLHPYTQGLIEVYPRIDPSLRDKIKEIKIKV-DIVRPDKGCVFYPRCPFA 300
Query: 296 KEMCSKEKPKLIEVEKEHYVACHLY 320
C +++P+L EV + HYVAC LY
Sbjct: 301 MPKCKEQEPELKEVSQNHYVACWLY 325
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 204 bits (514), Expect = 1e-51
Identities = 116/296 (39%), Positives = 176/296 (59%), Gaps = 17/296 (5%)
Query: 5 PLVKIENLYIDFITDRG-VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
PL+++ L + F + VKA+DGV+F IR+GE L+GE+GCGKS + +MRL
Sbjct: 5 PLLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQPT 64
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
+G + Y+G NL L E+E K + MIFQDP SLNP T+ + + E ++H L
Sbjct: 65 ---EGSVTYRGTNLHALSEKEQFAFNRK-LQMIFQDPYASLNPRMTVREIILEPMEIHNL 120
Query: 124 PVVG----SILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
S++DE+++ + + PD R YP E SGG RQR+ IA LS P ++A
Sbjct: 121 YNTHKARLSVVDELLEAVGLH--PDFGSR---YPHEFSGGQRQRIGIARALSLNPEFIVA 175
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEP +ALDV++QAQ++NL+ L+++ + L I H+ +V ++DR+ VMY G ++EI
Sbjct: 176 DEPISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHISDRIGVMYLGHMMEITE 235
Query: 240 VEEIFDNPLHPYTQGLLRALPRGH---KTERELENIPGRVPNLLNPPKGCRFHPRC 292
++ PLHPYT+ LL ++P + +RE + G +P+ +NPP GC F RC
Sbjct: 236 SGTLYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELPSPVNPPSGCVFRTRC 291
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 203 bits (511), Expect = 2e-51
Identities = 120/329 (36%), Positives = 178/329 (53%), Gaps = 22/329 (6%)
Query: 2 SGEPLVKIENLYIDFITDRGVV--KAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
S PL+ + L++ F RG +A+DGV DIR+GEI+AL+GE+GCGK+ A++++ L
Sbjct: 28 SAPPLLSVRGLHVTFPGRRGAAAARAVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGL 87
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
+ G++ + G L R ++ R + ++ QDP SLNP T+ D + E +
Sbjct: 88 VRPTG---GRVTFDGAPL-GYSARALKAYR-RRAQLVLQDPSGSLNPRHTVYDIVAEGLR 142
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+H G + + L + PE+ YP ELSGG RQRV+IA L +P LL+A
Sbjct: 143 IHGH--AGDERTAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLQPELLVA 200
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEP +LD +++ +I+ L+L LR + S L++TH+ G+ +ADRV VMY G++VE
Sbjct: 201 DEPVASLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGRIVETGA 260
Query: 240 VEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRC------- 292
VE++ P HPYTQ LL LP L G P+ P GCRFH RC
Sbjct: 261 VEQVLTAPRHPYTQALLSVLPEAPGAPVVL---TGEPPDPSYIPGGCRFHVRCPVLASGE 317
Query: 293 ---KKAKEMCSKEKPKLIEVEKEHYVACH 318
+ C E+ +++ E VACH
Sbjct: 318 AVRAGVADACRNEELEILRGGDESQVACH 346
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 202 bits (508), Expect = 5e-51
Identities = 125/324 (38%), Positives = 185/324 (56%), Gaps = 15/324 (4%)
Query: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
L+ I NL I+ T G +K +DGV+ + +GEI L+GE+G GKS+ AK I + N I
Sbjct: 3 LLDICNLNIEIQTSNGRIKIVDGVNLSLNEGEISGLVGESGSGKSLIAKVICNAIKENWI 62
Query: 66 VKG-KIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE-----MFK 119
+ + + LL+L + RK+ GKEI+MIFQ+PL+ L+P I Q+ + FK
Sbjct: 63 ITADRFRFHDVELLKLSPNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIPNWTFK 122
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
G ++LL V I D + SYP EL+ G Q+VMIAM ++ +P LLIA
Sbjct: 123 NKWWKWFGWKKRRAIELLHRVGIKDHRDIMASYPNELTEGEGQKVMIAMAVANQPRLLIA 182
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPT AL+ T Q+ L+ + + T+ILL +++ ++E D++ V+Y GQ E AP
Sbjct: 183 DEPTNALESTTALQVFRLLSSMNQNQGTTILLTSNDIKSISEWCDQISVLYCGQNTESAP 242
Query: 240 VEEIFDNPLHPYTQGLLRAL-----PRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKK 294
E + ++P HPYTQ L+ A+ P G KT +L + G P L P GCR PRC
Sbjct: 243 TEILIESPHHPYTQALINAVPDFTQPLGFKT--KLGTLEGTAPILEQMPIGCRLGPRCPF 300
Query: 295 AKEMCSKEKPKLIEVEKEHYVACH 318
A++ C EKP+ +++ K+H +CH
Sbjct: 301 AQKKC-MEKPRRLKI-KQHEFSCH 322
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 199 bits (500), Expect = 5e-50
Identities = 115/315 (36%), Positives = 181/315 (56%), Gaps = 23/315 (7%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E L++++N+ F GVVKA++ +SFDI +GE L+GE+GCGKS T + I+RL
Sbjct: 6 EKLIEVKNVKQHFDVSGGVVKAVNDISFDIYRGETFGLVGESGCGKSTTGRTIIRLYDAT 65
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
A G++++ G N+ R K +++ MIFQDP SLNP T+ D + E +H L
Sbjct: 66 A---GEVLFDGENVHGKKSRAELKKFNRKMQMIFQDPYASLNPRMTVGDIIAEGIDIHGL 122
Query: 124 PVVGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+D + +LL V + ++ +P E SGG RQR+ IA L+ +P +IADEP
Sbjct: 123 AKSKKERMDRVHELLNTVGLN--KEHANRFPHEFSGGQRQRIGIARALAVEPEFIIADEP 180
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
+ALDV+IQAQ++NL+ +L+++ + L I H+ +V ++DR+ VMY GQ+VE+ EE
Sbjct: 181 ISALDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYRGQIVELTTSEE 240
Query: 243 IFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
++ NP+HPYT+ LL A+P +P P+ K + P ++ +E
Sbjct: 241 LYANPVHPYTKSLLSAIP-----------LPD--PDYERNRKRIVYDP----SQHDYGRE 283
Query: 303 KPKLIEVEKEHYVAC 317
P + E+ H+V C
Sbjct: 284 VPTMREIRPGHFVLC 298
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 198 bits (497), Expect = 1e-49
Identities = 116/327 (35%), Positives = 184/327 (55%), Gaps = 12/327 (3%)
Query: 3 GEPLVKIENLYIDFITDRGVVK-----AIDGVSFDIRKGEILALIGETGCGKSVTAKAIM 57
GE LV+ +NL DF + +K AI+ VSF + K L+++GE+G GKS TAK I
Sbjct: 6 GELLVEGKNLVKDFAINSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIA 65
Query: 58 RLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
++ A G I YKGR++ ++ R+ + + M++QDP SLNP TI +
Sbjct: 66 KMY---APTSGVIEYKGRDIQDIVSRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIARP 122
Query: 118 FKVHKLPVVGS---ILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
+HK G+ + + + +LL+ V + P+ YP +LSGG RQRV +A ++
Sbjct: 123 LLIHKKVTPGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGA 182
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+++ADEPT+ LDV+I+A ++NLM E++ + + S+L ITH+ +A+ + VMY G +
Sbjct: 183 EVVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHM 242
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERE-LENIPGRVPNLLNPPKGCRFHPRCK 293
VE +EI +P HPYT+ L+ A+P K+ E LE G +P GC F RC
Sbjct: 243 VEWGDTDEIIHDPQHPYTKLLVSAVPDPKKSIHEKLEGNKGEIPLWTPNSVGCPFAGRCL 302
Query: 294 KAKEMCSKEKPKLIEVEKEHYVACHLY 320
A C + P++ ++ H+V C+L+
Sbjct: 303 YASAKCREALPEVTQLSDNHFVRCYLF 329
>pir||A82876 oligopeptide transport system permease protein UU560 [imported] -
Ureaplasma urealyticum
>gi|6899566|gb|AAF30973.1|AE002154_9 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 506
Score = 196 bits (494), Expect = 2e-49
Identities = 123/325 (37%), Positives = 191/325 (57%), Gaps = 12/325 (3%)
Query: 8 KIENLYIDFIT-----DRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
+IEN+ + F DR +V V F +GE+ A+IGE+G GKSV + L +
Sbjct: 161 EIENVRLTFTNPSKPNDRALVLRNTSVQF--YEGEVHAIIGESGSGKSVITSLLYGLAGK 218
Query: 63 NAIVK-GKIIYKGRNLLELPEREMRKIR--GKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
NA V+ GKI+ + + ++ K R GK I+ +FQ+P+++LNP I Q+ E
Sbjct: 219 NANVEEGKILLYNNEVQDFSFKDWEKSRYLGKVISAVFQNPMSTLNPTMKIGKQIMEGML 278
Query: 120 VHKLPVVGS-ILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
++ + ++ ++ LK+ KI +PE+ ++ YP ELSGGM QRV+IA ++S P +L+
Sbjct: 279 INGIVKTRKEAYNKSIEYLKLTKINNPEEIMELYPHELSGGMIQRVVIASIVSLHPKILV 338
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPTTALD T+QA +++++ EL+EKF+ I+ ITH+ GVVA +A+ + +MYAGQ++E
Sbjct: 339 LDEPTTALDPTVQALVLDVIRELQEKFKMCIIFITHDLGVVASIANYISIMYAGQIIEEG 398
Query: 239 PVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEM 298
+EI P HPYT GL+ ++P +K +R L I G VP+ LN G F R A
Sbjct: 399 QRDEILWYPQHPYTWGLIMSMPDVNKGDR-LATIKGSVPSRLNDIVGDAFAIRNDYALTR 457
Query: 299 CSKEKPKLIEVEKEHYVACHLYGGR 323
+ +P++ V + H V L R
Sbjct: 458 DFEHEPEMYHVSETHRVKSALLDER 482
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 196 bits (493), Expect = 3e-49
Identities = 102/316 (32%), Positives = 181/316 (57%), Gaps = 4/316 (1%)
Query: 7 VKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PRNAI 65
+ ++NL + +++D G++K + VS DI + +I+ + GE+G GKS A IM + P +
Sbjct: 6 ISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPPLYV 65
Query: 66 VKGKIIYKGR-NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
+G II + ++L + E+ KIRG I+ + Q SLNP+ +++ ++ K +
Sbjct: 66 ERGSIIVDSKYDILSMSRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKAKGMD 125
Query: 125 VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
+I D + L+ V + D + + YPF+LSGGM+QRV+IA+ L P +LI DEPTT
Sbjct: 126 YYANI-DVVYNTLEEVGLTDRQV-LDMYPFQLSGGMKQRVVIAISLLLNPKILIMDEPTT 183
Query: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
LDV +Q +I+ L+ +++++ + ++++I+H+ ++ +++D + VMY GQ+VE +
Sbjct: 184 GLDVVVQYEILKLLKKIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGKYNTLL 243
Query: 245 DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKP 304
+ HPYT LL ++P ++L IPG + PKGC F RC C + P
Sbjct: 244 EEAYHPYTYLLLSSVPTVRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTCKEVPP 303
Query: 305 KLIEVEKEHYVACHLY 320
+++ +K + C Y
Sbjct: 304 QIVAYDKFGFYKCIRY 319
>pir||E71545 probable oligopeptide transport ATPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328607|gb|AAC67793.1|
(AE001293) Oligopeptide Transport ATPase [Chlamydia
trachomatis]
Length = 277
Score = 195 bits (491), Expect = 5e-49
Identities = 99/259 (38%), Positives = 167/259 (64%), Gaps = 3/259 (1%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E L+KI+NL + + D + ++ +S I++ + +AL+GE G GK+ +KA++ LP N
Sbjct: 3 EDLLKIDNLVVS-VKDSNQ-RLVNHLSLTIKRCQSMALVGENGSGKTTVSKAVLGFLPDN 60
Query: 64 AIVK-GKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
++ G+I+Y ++ L R+++ IRGK+IA IFQ+ + +L P + Q+ E + H
Sbjct: 61 CYIQSGRILYSSTDITRLSRRQLQTIRGKKIATIFQNAMGTLTPSMRVGAQIVETLRHHF 120
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+ +LL+ V I P++ ++ YPFELSGGM QRV IA+ L+ P L+IADEP
Sbjct: 121 DMSKEEAFSKARELLESVHIESPDRCLQLYPFELSGGMCQRVSIAIALATNPELIIADEP 180
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
+TALD QAQ++ ++ ++ + T++LLITHN +V+E+ + + ++ G++VE PV+E
Sbjct: 181 STALDSISQAQVLRVLTQIHQNHSTALLLITHNLALVSELCEEMAIIRYGEIVEQGPVQE 240
Query: 243 IFDNPLHPYTQGLLRALPR 261
+ +P HPYTQ L+RA+P+
Sbjct: 241 LLHSPSHPYTQQLIRAIPK 259
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 194 bits (487), Expect = 2e-48
Identities = 105/257 (40%), Positives = 160/257 (61%), Gaps = 6/257 (2%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA 64
PL+ +E L + F TD A+ GV +R G+ +A++GE+G GKS TA AI+ LLP
Sbjct: 7 PLLSVEGLEVTFGTD---APAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGG 63
Query: 65 -IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
I G++++ GR++ + +R IRG+EI + QDP+T+LNPV+ + Q+ E + +
Sbjct: 64 RITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTD 123
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
V+LL +PDP K+ YP +LSGGM QR +IA+ L+ +P LLIADEPT
Sbjct: 124 GRAAR--RRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPT 181
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
+ALDVT+Q Q+++ + L ++ T++LLITH+ + A+ A+ VVV+ G VVE + I
Sbjct: 182 SALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSI 241
Query: 244 FDNPLHPYTQGLLRALP 260
+P H YT+ L+ A P
Sbjct: 242 LQSPQHEYTRRLVAAAP 258
Score = 156 bits (390), Expect = 4e-37
Identities = 87/249 (34%), Positives = 147/249 (58%), Gaps = 5/249 (2%)
Query: 24 KAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPER 83
+A+DGVSF + + LA++GE+G GKS A+ ++ LL + G +++ G + R
Sbjct: 305 RAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTS---GTVVFDGTYDVGALAR 361
Query: 84 EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIP 143
+ + + +FQ+P +SL+P++++ + E +VH + + +L+ V +P
Sbjct: 362 DQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELVDQVALP 421
Query: 144 DPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELRE 203
+ P ELSGG RQRV IA L+ +P +L+ DE +ALDV +QAQI++L+ +L+
Sbjct: 422 S--SILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQA 479
Query: 204 KFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGH 263
+ L I+H+ V+ ++AD V+VM AG+VVE A EE+F P H YT+ LL+A+P
Sbjct: 480 DLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGAP 539
Query: 264 KTERELENI 272
R++ N+
Sbjct: 540 SAPRKVGNL 548
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 192 bits (483), Expect = 5e-48
Identities = 107/248 (43%), Positives = 154/248 (61%), Gaps = 7/248 (2%)
Query: 77 LLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVK- 135
LL+ + + K R K I ++FQDP++SLNP T+ D + E H L ++ K
Sbjct: 143 LLDDIDEKRMKFRRK-IQIVFQDPMSSLNPRMTVGDILTEPILFHGLAKTREEAVDMAKD 201
Query: 136 LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIM 195
LLK V + E ++ YP + SGG RQR+ IA +S P ++I DEPT +LDV++QAQ++
Sbjct: 202 LLKSVGLK--EYHLERYPHQFSGGQRQRIAIARAISINPEIVILDEPTASLDVSVQAQVI 259
Query: 196 NLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGL 255
NL L+L+E+ + L I+H+ G+V ++ V +MY G++VE+ +EIFDNPLHPYTQ L
Sbjct: 260 NLFLKLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEMGNTDEIFDNPLHPYTQAL 319
Query: 256 LRALP-RGHKTERELENI--PGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKE 312
L A+P K ER + I G VP+ +N P GC FHPRC +C KE P + E+
Sbjct: 320 LSAVPVPDPKVERTRKRIILRGGVPSPINRPTGCFFHPRCPYKMPVCEKEYPVMKEISPG 379
Query: 313 HYVACHLY 320
H+VACHL+
Sbjct: 380 HWVACHLH 387
>gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport protein D [Thermotoga
maritima]
Length = 277
Score = 187 bits (470), Expect = 2e-46
Identities = 108/266 (40%), Positives = 162/266 (60%), Gaps = 11/266 (4%)
Query: 4 EPLVKIENLYIDFITD----RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
E L+ +NL ++ D + VVKA+D VS DI EI + GE+GCGKS KA++ L
Sbjct: 2 ETLISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLAL 61
Query: 60 L-PRNAIVKGKIIY--KGR--NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQM 114
L P ++ G+++Y +GR N+ L +RK+R I+ I Q + LNPV + D
Sbjct: 62 LDPPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDTF 121
Query: 115 GEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
E+ H LD V+ LK + +P E+ + +P +LSGGMRQRV IA+ KP
Sbjct: 122 IEILSSHVKKQTKEFLDLAVQHLKDLGLP--ERVLNMFPHQLSGGMRQRVTIALATVLKP 179
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
++ ADEPTTALDV Q +M L+ +++ + +++L+TH+ GV A++ R+ +MYAG++
Sbjct: 180 RVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGKI 239
Query: 235 VEIAPVEEIFDNPLHPYTQGLLRALP 260
VE P EIF NPLHPYT+ L+++LP
Sbjct: 240 VEEGPTLEIFKNPLHPYTRYLIQSLP 265
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 186 bits (468), Expect = 3e-46
Identities = 119/324 (36%), Positives = 177/324 (53%), Gaps = 14/324 (4%)
Query: 5 PLVKIENLY----IDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
PL++I+NL I I R + A+D V+FDI + EI L GE+GCGK+ TAK I+
Sbjct: 2 PLLEIKNLTKIFTIGSIFSRTRIVAVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGF- 60
Query: 61 PRNAIVKGKIIYKGRNL--LELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
G+IIYKGR + + E+E R++ KEI +FQ+P ++ NP+ ++ E
Sbjct: 61 --EEPTSGEIIYKGRKIDRVHQNEKERRELL-KEIQAVFQNPFSTFNPLRKVDRYFYETL 117
Query: 119 KVHKLPVVGSILDEIVK-LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ +EI+K L V I E K YP E SGG QR+ IA L PSLL
Sbjct: 118 FNLGIADTKKKAEEIIKEKLSAVGISFEEFSEK-YPSEFSGGQLQRISIARALLTNPSLL 176
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ADEP + +D +++ I+NL +L+E++ S+L ITH+ ++DR+ VM+ G +VE+
Sbjct: 177 VADEPVSMVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVMFRGNIVEL 236
Query: 238 APVEEIFDNPLHPYTQGLLRALPR-GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAK 296
P E++ P HPYTQ L ++P K + ++ +GC+F RC KA
Sbjct: 237 GPAEKVLMEPKHPYTQLLRESVPEPDPKKKWDIRIKLSETEQAEYLRQGCKFAGRCPKAM 296
Query: 297 EMCSKEKPKLIEVEKEHYVACHLY 320
++C KE P EV+ V C LY
Sbjct: 297 DICRKEPPPYFEVDGVQ-VKCWLY 319
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 185 bits (466), Expect = 4e-46
Identities = 116/321 (36%), Positives = 189/321 (58%), Gaps = 24/321 (7%)
Query: 6 LVKIENLYIDFITDRGVVK-----AIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
L+ I+NL + G ++ A+ VS I++G+ LA++GE+G GKS K I+RL
Sbjct: 3 LLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILRL- 61
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
KGK+ +KG+++ + + RK+ + +FQDP +SLNP +E+ + E V
Sbjct: 62 --EKPTKGKVSFKGKDIFSMGKEYTRKV-----SAVFQDPRSSLNPRMKVEEILEEPLIV 114
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
H+ V + ++K+L+ V++ E+ ++ P ++SGG QRV IA L +P L++AD
Sbjct: 115 HR---VKGRKERVLKVLQRVRLS--EELLEKRPLQISGGQAQRVAIARALILEPELIVAD 169
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EPT +LDV++Q +I+ L EL K S +TH+ VV ++A+ V V+YAG ++E+
Sbjct: 170 EPTASLDVSVQEEILELFKELNSK-GISFFFVTHDIRVVEKVANMVGVIYAGILMELGKK 228
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKTERE-LENIPGRVPNLLNPPKGCRFHPRCKKAKEMC 299
EE+ NPLHPYT+ LL +P H +R+ L+ + ++ P +GC F+PRC +A E C
Sbjct: 229 EEVLKNPLHPYTKFLLENVPVRHPKDRKPLKYLQEEEVSI--PEEGCPFYPRCPEAMEEC 286
Query: 300 SKEKPKLIEVEKEHYVACHLY 320
K+ + EV +AC+LY
Sbjct: 287 -KKFIRRSEV-NGRLLACNLY 305
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 180 bits (451), Expect = 3e-44
Identities = 100/260 (38%), Positives = 156/260 (59%), Gaps = 4/260 (1%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+P++ + NL +D + D + +D V F ++ GE+L L+GE G GKSV A+A++ +
Sbjct: 3 DPILAVSNLSVDLLRDGSKRRIVDNVDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQAP 62
Query: 64 A-IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
I G++I++G+++L L R +R IRG I I +P+ SL+P I Q+ E + +
Sbjct: 63 LDISSGQVIFEGKDVLSLDARGLRSIRGNRIGFIGANPMGSLDPRLPIGHQIVEKLRSVR 122
Query: 123 LPVVGSI--LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
P +G ++++ LL V IP P R PF+ SGGM QRVMI L ++PSL+IAD
Sbjct: 123 -PDIGKAEAKEKVLDLLGRVHIPSPRSRFHEAPFQFSGGMMQRVMIVDALVSEPSLVIAD 181
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
T LDVT+ AQI+ L+ LRE +T+ L I+ + VV+++A+R +VM G++VE
Sbjct: 182 NITQPLDVTVAAQIIRLIDNLRESLDTAFLFISSSLPVVSKIAERTLVMQGGRIVEQGET 241
Query: 241 EEIFDNPLHPYTQGLLRALP 260
+I NP YT+ LL +P
Sbjct: 242 ADIAANPQQAYTRALLSRIP 261
Score = 159 bits (398), Expect = 4e-38
Identities = 105/324 (32%), Positives = 166/324 (50%), Gaps = 16/324 (4%)
Query: 3 GEPLVKIENLYIDFITDR-------GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
GE ++ +EN + R VKA+ VSF ++ GE ++GE+GCGKS +
Sbjct: 275 GEAVLTVENATRTYSVRRRDAFNAFNEVKAVRDVSFTVKAGENFGIVGESGCGKSTLTRL 334
Query: 56 IMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG 115
+ L NA G+I + G+NL L R + ++R K ++ QDP SL +I +
Sbjct: 335 LAWLEQPNA---GRIAFLGKNLSNLSARSLTEMR-KSFQLLLQDPYGSLPAGMSIIRMIE 390
Query: 116 EMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
E +H + + + ++ D +R+ P LS G RQR+ IA L KP
Sbjct: 391 EPLLIHGVARRDAEQRAQEAMREVGLHADLAERL---PVGLSAGQRQRINIARALVLKPR 447
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
LLI DE +ALD QA++++L L+ S + I+H+ +V + RV VMY G++V
Sbjct: 448 LLILDETLSALDQVEQAELLDLFKRLQAAHGFSYIFISHDLALVRRICHRVAVMYLGRIV 507
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALP--RGHKTERELENIPGRVPNLLNPPKGCRFHPRCK 293
E+A + +F++P HPYT+ LL A+P ++ + G P+ ++ P GC F RC
Sbjct: 508 ELADNKTLFEHPHHPYTRALLSAMPTLEENRFPGAQYLLDGEPPSPIHLPVGCSFRSRCP 567
Query: 294 KAKEMCSKEKPKLIEVEKEHYVAC 317
+A+ C K P L + +Y AC
Sbjct: 568 RAQSDCEKTDPMLEGSDGGNYAAC 591
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 179 bits (449), Expect = 4e-44
Identities = 102/289 (35%), Positives = 163/289 (56%), Gaps = 4/289 (1%)
Query: 33 IRKGEILALIGETGCGKSVTAKAIMRLLPR-NAIVKGKIIYKGRNLLELPEREMRKIRGK 91
+RKG IL + GE+G GKS A+AI R L I G++ +++L + ++R+IR
Sbjct: 5 VRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRRIRAT 64
Query: 92 EIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKS 151
+ I Q + +LNPV I Q ++ H L + D I +KMV++ E ++S
Sbjct: 65 RFSFIPQAAMNALNPVKRIRYQFYDLLIAHGLQPEKNE-DRIQAAIKMVRLR--ENVLES 121
Query: 152 YPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILL 211
+P ELSGGMRQRV+IAM L +P L+I DEPTT LDV +Q +I+ + ++ + +++
Sbjct: 122 FPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSGLTMIF 181
Query: 212 ITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELEN 271
ITH+ ++ E+AD + ++YAG++VE P +E+ ++P HPY LLR++PR
Sbjct: 182 ITHDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMPRIGAKRGTGYR 241
Query: 272 IPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHLY 320
+ G N GC+F+ RC + C + P+L + H+ C Y
Sbjct: 242 LIGNPGNFREDFNGCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRCLRY 290
>pir||A72284 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981747|gb|AAD36271.1|AE001776_7 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 319
Score = 177 bits (444), Expect = 2e-43
Identities = 108/308 (35%), Positives = 170/308 (55%), Gaps = 19/308 (6%)
Query: 20 RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLE 79
R + A+D VSF +++ EI L GE+GCGKS TAK I+ G II++G ++
Sbjct: 22 RSKITAVDDVSFSLKRAEIFTLAGESGCGKSTTAKMILGF---EEPTSGDIIFEGNSIQW 78
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP----VVGSILDEIVK 135
+R+ +R ++ +FQ+P S NP+ T++D E + L ++DE ++
Sbjct: 79 WKKRKKDFLR--KVQAVFQNPFESFNPLLTVDDIFFETVMNYGLANSRNEAEKLIDEKLQ 136
Query: 136 LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIM 195
L+ + K D R +S ELSGG QR IA L + PSLLIADEP + +D +++ I+
Sbjct: 137 LVGL-KFEDINGRYQS---ELSGGQLQRASIARSLLSNPSLLIADEPVSMVDASLRMSIV 192
Query: 196 NLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGL 255
NL +LR++ S++ ITH+ ++DR+ +M+ G +VE PV+++ +P HPYTQ L
Sbjct: 193 NLFAKLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGNIVETGPVDKVLIDPKHPYTQLL 252
Query: 256 LRALP---RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKE 312
++P K RE+ L +GC+F RC KE+C +EKP + V+
Sbjct: 253 RESIPDPDPEKKWSREITVSDTEYEEYLK--EGCKFAGRCPYVKEICRREKPDDVLVDGV 310
Query: 313 HYVACHLY 320
V CH+Y
Sbjct: 311 -LVKCHIY 317
>pir||T35941 probable ABC-type transport systsem ATP-binding protein -
Streptomyces coelicolor >gi|4158200|emb|CAA22763.1|
(AL035206) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 175 bits (440), Expect = 5e-43
Identities = 121/333 (36%), Positives = 169/333 (50%), Gaps = 35/333 (10%)
Query: 5 PLVKIENLYIDFITDRGV-VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
P++ + L + F+ G V A+ FD+ GE LALIGE+GCGKSV A A++ LLP N
Sbjct: 6 PVLSVRGLSVRFLMPGGRRVAAVTDAHFDVAPGECLALIGESGCGKSVLASALLGLLPGN 65
Query: 64 AIVKGKIIYKGRNLLELPEREM-RKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
A G+ + +LL ER + R +RG+ I ++ Q P L PV T+ Q+ E V +
Sbjct: 66 AQTAGRALLGDLDLLAADERTLARTVRGRLIGLVPQSPAAHLTPVRTVRSQLAE--TVAE 123
Query: 123 LPVVGSILDEIVKLLKMV--KIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
L V + + + P + +P ELSGG+ QR A+ L LL+AD
Sbjct: 124 LTGVRGGRKALREAAGAAAERAAFPADHLDHHPHELSGGLAQRAATALALVGDAPLLLAD 183
Query: 181 EPTTALDVTIQAQIMNLMLELREKFE-------------TSILLITHNPGVVAEMADRVV 227
EPTT LD + + ++ ELR + ++L+ITH+ A +ADRV
Sbjct: 184 EPTTGLDRDLVDRTVD---ELRRHVDDAEGKVARGDAGSRALLMITHDLAAAARIADRVA 240
Query: 228 VMYAGQVVEIAPVEEIF--DNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKG 285
VMYAG++VE+A F P HPY++GLL ALP +R IPG P L P G
Sbjct: 241 VMYAGRIVELADAGAFFGAPGPRHPYSRGLLDALP-----DRGFTPIPGLPPELGALPGG 295
Query: 286 CRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACH 318
C F RC +A + C+ P H VACH
Sbjct: 296 CAFAARCDRATDACAALPP------LRHAVACH 322
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 172 bits (432), Expect = 4e-42
Identities = 104/265 (39%), Positives = 160/265 (60%), Gaps = 16/265 (6%)
Query: 4 EPLVKIENLYIDFITDRGV---VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
E L++I NL F ++G V+A+D +SFDI KGE L L+GE+GCGKS T + I+RL
Sbjct: 6 EKLLEIHNLKQYF--NKGTASEVRAVDDISFDIYKGETLGLVGESGCGKSTTGRTIIRLY 63
Query: 61 PRNAIVKGKIIYKGRNLLELPER-EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
G++IY G+++ R EM + R K + MIFQDP SLNP ++D + E +
Sbjct: 64 DATG---GEVIYNGKDVHARKSRKEMLEFRRK-MQMIFQDPYASLNPRVKVKDIIAEGIR 119
Query: 120 VHKLPVVGSILD-EIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+H L + ++ LL+ V + ++ YP E SGG RQR+ P +I
Sbjct: 120 IHGLAKTPEETNKQVYDLLETVGLS--KEHAGRYPHEFSGGQRQRIGYRSCACCSPEFII 177
Query: 179 ADEPTTALD---VTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
ADEP +ALD V+IQAQ++NL+ +L+++ + L I H+ +V ++DR+ VMY G++V
Sbjct: 178 ADEPISALDFLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIGVMYFGKLV 237
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALP 260
++A +++ PLHPYT+ LL A+P
Sbjct: 238 KLAFANDLYHAPLHPYTESLLSAIP 262
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 171 bits (428), Expect = 1e-41
Identities = 111/321 (34%), Positives = 170/321 (52%), Gaps = 39/321 (12%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E LV+I++L I F A+ +F I KGE +L+GE+G GK+ +AI+ L N
Sbjct: 3 EKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGL---N 59
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G II+ G+ + RE + I MIFQDP SLN T++ + E H+L
Sbjct: 60 DTSNGDIIFDGQKINGKKSREQAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRL 119
Query: 124 --------PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
V SI+ E+ L + + YP E SGG RQR+ IA L +P
Sbjct: 120 FKDEEERKEKVQSIIREVGLLAE---------HLTRYPHEFSGGQRQRIGIARALVMQPD 170
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
+IADEP +ALDV+++AQ++NL+ + +++ + L I H+ VV ++DR+ V+Y G +V
Sbjct: 171 FVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIV 230
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPN-LLNPPKGCRFHPRCKK 294
E+A EE+F+NP+HPYTQ LL A+P +P+ +L K + + +
Sbjct: 231 EVAETEELFNNPIHPYTQALLSAVP---------------IPDPILERKKVLKVYEGSQH 275
Query: 295 AKEMCSKEKPKLIEVEKEHYV 315
E +KP ++E+ HYV
Sbjct: 276 DYE---TDKPSMVEIRPGHYV 293
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 169 bits (423), Expect = 5e-41
Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 25/306 (8%)
Query: 25 AIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL-PRNAIVKGKIIYKGRNLLELPER 83
AID VSF+I GEI +L GE+GCGK+ TAK ++ L P N G+++Y G L + E
Sbjct: 25 AIDNVSFEIGSGEIFSLAGESGCGKTTTAKILLGLEEPTN----GEVLYDGIKLKDFVEN 80
Query: 84 EMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLL--KMVK 141
EM + K++ + Q+P ++ NP +ED + FK + + DE ++L+ K+
Sbjct: 81 EMHFL--KKVQTVQQNPFSTFNPFRKVEDYL---FKTVLRFKMANTKDEALRLIEEKLSV 135
Query: 142 IPDPEKRVKS-YPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLE 200
+ +K YP E SGG QR+ IA L PS L+ADEP + +D +++ I+NL +
Sbjct: 136 VGLNFDEIKGRYPSEFSGGQLQRISIARALLTNPSFLVADEPVSMIDASLRISIVNLFRD 195
Query: 201 LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP 260
L+E+F SIL ITH+ +AD++ +M+ G +VE+ ++I D P HPYT+ L ++P
Sbjct: 196 LKERFGISILYITHDLSTAYYVADKLAIMFRGSIVEMGRAQDILDTPFHPYTKLLKSSIP 255
Query: 261 RGHKTERELENIPGRVPNLLNP------PKGCRFHPRCKKAKEMCSKEKPKLIEVEKEHY 314
ENI NL + KGC+F RC + +C + P +V
Sbjct: 256 VPDPEYEWDENI-----NLSSTEREEFFAKGCKFASRCPEVMSICRESVPPDFDV-NGRV 309
Query: 315 VACHLY 320
V C LY
Sbjct: 310 VKCWLY 315
>gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 267
Score = 168 bits (421), Expect = 8e-41
Identities = 98/268 (36%), Positives = 163/268 (60%), Gaps = 13/268 (4%)
Query: 4 EPLVKIENLYIDFITDRGVV-----KAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
+ L+++ ++Y DFI +GV I V+ DIRK EI+ ++G +G GK+V A I+
Sbjct: 3 DKLIELIHVYKDFIVRKGVFGKEHRPGIWDVNMDIRKNEIVGMVGGSGGGKTVIAWMIVG 62
Query: 59 LLPRNAIVKGKIIYK--GRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE 116
LL KG IIY G ++ + ++++++ R ++ ++FQDP +SL+P T++ +
Sbjct: 63 LLKPT---KGSIIYTPMGLDVTKANKKQLKQYRA-DVQLVFQDPYSSLDPAHTVKWHIER 118
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
K++K G I + I +LL+ V + PE + YPF+LSGG RQRV +A +L+ P +
Sbjct: 119 PLKIYKYR--GDIEERIKELLREVALTPPEDFLNKYPFQLSGGQRQRVYLARVLALNPKV 176
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LIADEP + +D +I+A +++L LR++ SI+ ITH+ + +ADRV V+ G++VE
Sbjct: 177 LIADEPVSNVDASIRASLLDLFKRLRDEKGISIMYITHDIATIGYVADRVYVVKNGRIVE 236
Query: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHK 264
V I +P H YT+ L+ A+P +K
Sbjct: 237 EGDVGTIISHPKHEYTRLLIEAVPDPYK 264
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 167 bits (418), Expect = 2e-40
Identities = 105/312 (33%), Positives = 170/312 (53%), Gaps = 21/312 (6%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E LV++++L I F + A+ +F I+KGE +L+GE+G GK+ +AI+ L N
Sbjct: 3 EKLVEVKDLEISFGEGKKKFGAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGL---N 59
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G+I+Y G+ + + ++I MIFQDP SLN T++ + E L
Sbjct: 60 DTSSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNL 119
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
E +K + M ++ + + YP E SGG RQR+ IA L P +IADEP
Sbjct: 120 FKTEEERKEKIKNM-MAEVGLLSEHLTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPI 178
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
+ALDV+++AQ++NL+ ++ + + L I H+ VV ++DR+ V++ G +VE+A EE+
Sbjct: 179 SALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEEL 238
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F+NP+HPYTQ LL A+P IP P L + +HP + + +K
Sbjct: 239 FNNPIHPYTQSLLSAVP-----------IPD--PILERQKELVVYHP----DQHDYTLDK 281
Query: 304 PKLIEVEKEHYV 315
P ++E++ H+V
Sbjct: 282 PSMVEIKPNHFV 293
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 167 bits (418), Expect = 2e-40
Identities = 105/312 (33%), Positives = 170/312 (53%), Gaps = 21/312 (6%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E LV++++L I F + A+ +F I+KGE +L+GE+G GK+ +AI+ L N
Sbjct: 3 EKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGL---N 59
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
G+I+Y G+ + + ++I MIFQDP SLN T++ + E L
Sbjct: 60 DTSSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNL 119
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
E +K + M ++ + + YP E SGG RQR+ IA L P +IADEP
Sbjct: 120 FKTEEERKEKIKNM-MAEVGLLSEHLTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPI 178
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
+ALDV+++AQ++NL+ ++ + + L I H+ VV ++DR+ V++ G +VE+A EE+
Sbjct: 179 SALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEEL 238
Query: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
F+NP+HPYTQ LL A+P IP P L + +HP + + +K
Sbjct: 239 FNNPIHPYTQSLLSAVP-----------IPD--PILERQKELVVYHP----DQHDYTLDK 281
Query: 304 PKLIEVEKEHYV 315
P ++E++ H+V
Sbjct: 282 PSMVEIKPNHFV 293
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 165 bits (414), Expect = 6e-40
Identities = 100/326 (30%), Positives = 181/326 (54%), Gaps = 20/326 (6%)
Query: 6 LVKIENLYIDFITDRGVVK-----AIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
L++++ + + F G+ K A+ VS + +G++L ++GE+G GK+ + I+ L
Sbjct: 3 LMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQ 62
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G+++Y G N+ + + +K R K++ +I QDP ++L T+E+ +
Sbjct: 63 KPTS---GEVVYDGYNIWKNKRKIFKKYR-KDVQLIPQDPYSTLPFNKTVEEILVAPILR 118
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
+ + ++ LL++VK+ E+ + YP +LSGG +QR+ IA LS P +++AD
Sbjct: 119 WEKINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRIIVAD 178
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVA---EMADR--VVVMYAGQVV 235
EP T +D +++ I+N + E++ + +++ ITH+ + + D+ +VM+AG++V
Sbjct: 179 EPVTMVDASLRIGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFAGRIV 238
Query: 236 EIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKA 295
E A +EEI +PLHPYT L++ P +E+ N+ N KGC + RC A
Sbjct: 239 ERADLEEILKDPLHPYTNDLIKLTPSIDNLYKEI-NVK---INYERVEKGCPYRLRCPFA 294
Query: 296 KEMCSKEKPKLIEVEKEHYVACHLYG 321
++C E+PKL + H VAC LYG
Sbjct: 295 MDICKNEEPKLFKY--SHEVACFLYG 318
>emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 316
Score = 165 bits (414), Expect = 6e-40
Identities = 94/261 (36%), Positives = 154/261 (58%), Gaps = 12/261 (4%)
Query: 5 PLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA 64
PL++++ L +F R A+D VS ++R+GE +AL+GE+GCGK+ + ++ LL A
Sbjct: 24 PLLELDGLRKEF-GGRHPNVAVDDVSLEVREGETMALVGESGCGKTTLTRLLLGLLEPTA 82
Query: 65 IVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLP 124
G + + G++L L ++R +R +++ ++ QDP +S+NP I D + E H
Sbjct: 83 ---GSVRFDGQDLAALTASQLRGVR-RQMQVVLQDPYSSMNPRMRITDIVAEPLVTHDPE 138
Query: 125 VVGSIL-----DEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
G + +LL+ V + + YP E SGG RQRV IA L+ P LL+
Sbjct: 139 ARGRRARARNRQRVGELLEAVGLDAGIQ--DRYPHEFSGGQRQRVSIARALALHPRLLVL 196
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPT+ALDV++QA +++L+ +L+++ + + ++HN VVA++ADRV VM G +VE+
Sbjct: 197 DEPTSALDVSVQATVLDLLADLQQRLGLTYVFVSHNLAVVAQVADRVAVMSRGSLVEVGE 256
Query: 240 VEEIFDNPLHPYTQGLLRALP 260
+ P HPYT+ LL A+P
Sbjct: 257 AAAVLRTPRHPYTRQLLDAVP 277
>gb|AAC18099.1| (AF058302) ATPase component of putative ABC transporter
[Streptomyces roseofulvus]
Length = 524
Score = 156 bits (390), Expect = 4e-37
Identities = 82/239 (34%), Positives = 132/239 (54%), Gaps = 1/239 (0%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNA-IVKGKIIYKGRNLLE 79
G + G+ + G++LA++G +G GKS A+A + LLP + G++ G ++
Sbjct: 25 GTRTVLHGIDLRLAPGQVLAVLGASGSGKSTLAQAALGLLPPGGRVTAGRVTVAGHDITA 84
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKM 139
L +R +RG ++ QD SL+P+ + Q+ E + H+L V LL
Sbjct: 85 LAPHRLRALRGTVTGLVPQDQAVSLDPLVRVGAQVTETLRAHRLEDRREAARRAVPLLGE 144
Query: 140 VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLML 199
I P ++YP LSGG RQRV++A +A+P L++ADEPT+ALD T++ ++M+
Sbjct: 145 AGIEAPGPLARAYPHALSGGQRQRVLVAGAFAARPPLVVADEPTSALDATVRRRVMDRFA 204
Query: 200 ELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRA 258
L T++LL+TH+ + E AD+V V+ G++VE P + D P HPYT+ L A
Sbjct: 205 ALVAAHGTAVLLVTHDFRLARERADQVAVLADGRLVESGPAARVLDRPAHPYTRRLTGA 263
Score = 129 bits (321), Expect = 5e-29
Identities = 83/257 (32%), Positives = 134/257 (51%), Gaps = 20/257 (7%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
SG P+V+ +L ++ D V+A+DGV F +R+GE AL+GE+G GKS TA+ + L
Sbjct: 277 SGTPVVRARDLVKEYRRDGRRVRAVDGVGFTVREGEFFALVGESGSGKSTTARLVTGL-- 334
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
A G + E +R + ++ Q P + +P +T+ + E +
Sbjct: 335 -TAPTSGAV-----------EHAPAPVRPQ---LVQQSPYAAFDPRWTVRRIVEEPLRAR 379
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+P + +LL +V + E+ + P ELSGG RQRV +A L+ +P LL+ E
Sbjct: 380 HVPGARRRA-RLRELLALVGLD--EELLARRPRELSGGQRQRVALARALAPEPRLLVCGE 436
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
P ALD + ++++L+ LR + + L ++H VV + RV VM G+++E PV
Sbjct: 437 PVAALDPVARERVVHLLERLRAELGLTCLFVSHELDVVRRLCGRVAVMRGGRLLESGPVG 496
Query: 242 EIFDNPLHPYTQGLLRA 258
E+ P PYT+ LL A
Sbjct: 497 EVLSAPSQPYTRALLAA 513
>sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN PHNK
>gi|96281|pir||C35719 phnK protein - Escherichia coli
>gi|147206|gb|AAA24349.1| (J05260) HisP-like nucleotide
binding protein (phnK) [Escherichia coli]
>gi|216600|dbj|BAA14271.1| (D90227) ATP-binding protein
[Escherichia coli]
Length = 252
Score = 148 bits (371), Expect = 6e-35
Identities = 89/257 (34%), Positives = 143/257 (55%), Gaps = 11/257 (4%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-RLLPR 62
+PL+ + NL + +G VSFD+ GE+L ++GE+G GK+ K+I RL P+
Sbjct: 3 QPLLSVNNLTHLYAPGKG----FSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQ 58
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
+G+I Y+ R+L + E + R++ E ++ Q PL L + +GE
Sbjct: 59 ----QGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATG 114
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
G I K L+ V+IP R+ P SGGM+QR+ IA L P L+ DEP
Sbjct: 115 ARHYGDIRATAQKWLEEVEIP--ANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEP 172
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
T LDV++QA++++L+ L + +++++TH+ GV +ADR++VM GQVVE +
Sbjct: 173 TGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDR 232
Query: 243 IFDNPLHPYTQGLLRAL 259
+ D+P HPYTQ L+ ++
Sbjct: 233 VLDDPHHPYTQLLVSSV 249
>pir||S56325 hisP protein-like nucleotide-binding protein phnK - Escherichia
coli >gi|536941|gb|AAA96996.1| (U14003) HisP-like
nucleotide binding protein (ATP-binding protein)
[Escherichia coli] >gi|1790535|gb|AAC77058.1| (AE000482)
ATP-binding component of phosphonate transport
[Escherichia coli K12]
Length = 252
Score = 148 bits (371), Expect = 6e-35
Identities = 89/257 (34%), Positives = 143/257 (55%), Gaps = 11/257 (4%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-RLLPR 62
+PL+ + NL + +G VSFD+ GE+L ++GE+G GK+ K+I RL P+
Sbjct: 3 QPLLSVNNLTHLYAPGKG----FSDVSFDLWPGEVLGIVGESGSGKTTQLKSISARLTPQ 58
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
+G+I Y+ R+L + E + R++ E ++ Q PL L + +GE
Sbjct: 59 ----QGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATG 114
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
G I K L+ V+IP R+ P SGGM+QR+ IA L P L+ DEP
Sbjct: 115 ARHYGDIRATAQKWLEEVEIP--ANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEP 172
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
T LDV++QA++++L+ L + +++++TH+ GV +ADR++VM GQVVE +
Sbjct: 173 TGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDR 232
Query: 243 IFDNPLHPYTQGLLRAL 259
+ D+P HPYTQ L+ ++
Sbjct: 233 VLDDPHHPYTQLLVSSV 249
>gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subunit AmiF-like protein
[Streptococcus thermophilus]
Length = 238
Score = 142 bits (355), Expect = 5e-33
Identities = 84/241 (34%), Positives = 139/241 (56%), Gaps = 6/241 (2%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E LV+++++ I F + A+ +F I KGE +L+GE+G GK+ +AI+ L N
Sbjct: 3 EKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGL---N 59
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE-MFKVHK 122
G+II+ G+ + + + I MIFQDP SLN T++ + E ++ H
Sbjct: 60 DTSNGEIIFDGKKINGYLSHSEKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHL 119
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
+I +++K V + E+ + YP E SGG RQR+ IA L +P L+IADEP
Sbjct: 120 YKDEEERKAKIKEIIKEVGLL--EEHLTRYPHEFSGGQRQRIGIARSLVMQPDLVIADEP 177
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
+ALDV+++AQ++NL+ + +++ + L I H+ VV ++DR+ V+Y G +VE+A EE
Sbjct: 178 ISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEE 237
Query: 243 I 243
+
Sbjct: 238 L 238
>gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . amino-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 245
Score = 137 bits (341), Expect = 2e-31
Identities = 82/237 (34%), Positives = 142/237 (59%), Gaps = 16/237 (6%)
Query: 2 SGEPLVKIENLYIDFITDRG------VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKA 55
+ E +VK++N++I + R V A++ VS +I+KGEI LIGE+G GK+ K
Sbjct: 3 NNEIIVKVQNVWIKYPMGRVGLFRKLYVHAVNDVSLEIKKGEIFGLIGESGSGKTTLGKG 62
Query: 56 IMRLLPRNAIVKGKIIYK---GR--NLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTI 110
I+RL+ + G I +K G+ ++ +L + +R++R K+ +I QDP +L+P ++
Sbjct: 63 ILRLIETYS---GSIYWKVDGGKLVDITKLNDNTLRRLR-KDFQIIQQDPYGALDPRMSV 118
Query: 111 EDQMGEMFKVHKLPVVGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMM 169
+ + E ++HKL S +++I K+L +VK+ PE P ELSGG RQRV++A
Sbjct: 119 YEILAEGLRLHKLISNKSEEVEQIYKILSIVKLTPPENFANKKPMELSGGQRQRVVVARA 178
Query: 170 LSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRV 226
L +P ++ADEP + LD + + QI+ +L R++ T+ L ITH+ + + ++DR+
Sbjct: 179 LLLRPKFIVADEPISMLDASTRGQILEFILNDRDQRGTAYLFITHDISIASYVSDRI 235
>sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|7445934|pir||E64877 peptide transport system
ATP-binding protein sapF - Escherichia coli
>gi|470683|gb|AAA17671.1| (U08190) Shows similarity with
ATP-binding proteins from other ABC-transport operons,
Swiss Prot Accession Numbers P24137, P08007, P04285,
P24136 [Escherichia coli] >gi|1279404|emb|CAA65941.1|
(X97282) SapF protein [Escherichia coli]
>gi|1742103|dbj|BAA14843.1| (D90766) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1742112|dbj|BAA14851.1| (D90767) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1787547|gb|AAC74372.1| (AE000227) putative
ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 268
Score = 130 bits (323), Expect = 3e-29
Identities = 85/259 (32%), Positives = 145/259 (55%), Gaps = 16/259 (6%)
Query: 4 EPLVKIENLYIDFITDRG-----VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
E L+++ NL F G V+A+ +SF +R+G+ LA+IGE G GKS AK +
Sbjct: 3 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 62
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
++ + G+++ L R + I MIFQDP TSLNP I +
Sbjct: 63 MIEPTS---GELLIDDHPL----HFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPL 115
Query: 119 KVHKLPVVGSILDEIVKLLKMVKI-PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+++ +I++ ++MV + PD V YP L+ G +QR+ +A L +P ++
Sbjct: 116 RLNTDLEPEQRRKQIIETMRMVGLLPD---HVSYYPHMLAPGQKQRLGLARALILRPKVI 172
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
IADE +LD+++++Q++NLMLEL+EK S + +T + G++ ++D+V+VM+ G+VVE
Sbjct: 173 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVER 232
Query: 238 APVEEIFDNPLHPYTQGLL 256
++ +PLH T+ L+
Sbjct: 233 GSTADVLASPLHELTKRLI 251
>sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|628821|pir||S39589 peptide transport system
ATP-binding protein sapF - Salmonella typhimurium
>gi|414212|emb|CAA52288.1| (X74212) sapF [Salmonella
typhimurium]
Length = 268
Score = 127 bits (315), Expect = 2e-28
Identities = 85/259 (32%), Positives = 143/259 (54%), Gaps = 16/259 (6%)
Query: 4 EPLVKIENLYIDFITDRG-----VVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
E L+++ NL F G V A+ +SF +R+ + LA+IGE G GKS AK +
Sbjct: 3 ETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLAIIGENGSGKSTLAKMLAG 62
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
++ + G+++ L R + I MIFQDP TSLNP I +
Sbjct: 63 MIEPTS---GELLIDDHPL----HYGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPL 115
Query: 119 KVHKLPVVGSILDEIVKLLKMVKI-PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+++ +IV+ ++MV + PD V YP L+ G +QR+ +A L +P ++
Sbjct: 116 RLNTDLEPEQRRKQIVETMRMVGLLPD---HVSYYPHMLAPGQKQRLGLARALILRPKVI 172
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
IADE +LD+++++Q++NLMLEL+EK S + +T + G++ ++D+V+VM+ G+VVE
Sbjct: 173 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVER 232
Query: 238 APVEEIFDNPLHPYTQGLL 256
++ +PLH T+ L+
Sbjct: 233 GSTADVLASPLHELTRRLI 251
>gb|AAK40809.1| Phosphate ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 257
Score = 122 bits (303), Expect = 6e-27
Identities = 82/256 (32%), Positives = 137/256 (53%), Gaps = 16/256 (6%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
S E + I LY+ +I D+ ++K I + I I ++G +G GKS K + RL+
Sbjct: 6 SAEDVFNISRLYL-YINDKAILKDI---TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61
Query: 62 ---RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
V GK++Y G+++ ++ ++RK E+ M+FQ P + P +I D +
Sbjct: 62 IYDSKIKVDGKVLYFGKDIFQIDAIKLRK----EVGMVFQQP--NPFPHLSIYDNIAYPL 115
Query: 119 KVHKLPVVGSILDEIVKLLKMVKI-PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
K H + I + + L+ V + + R+ S +LSGG +QR+ IA L+ KP +L
Sbjct: 116 KSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEPT+ +D+ I L+ EL K E +I++++HNP VA +AD V +Y G++VE
Sbjct: 176 LMDEPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233
Query: 238 APVEEIFDNPLHPYTQ 253
EIF +P + T+
Sbjct: 234 GSSNEIFTSPKNELTE 249
>pir||H72275 phosphate ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981816|gb|AAD36335.1|AE001781_6 (AE001781)
phosphate ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 251
Score = 122 bits (302), Expect = 8e-27
Identities = 85/258 (32%), Positives = 141/258 (53%), Gaps = 18/258 (6%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL---L 60
EP+++IEN F G A+ V+ I K +I A+IG +GCGK+ ++I R+ L
Sbjct: 2 EPIIEIEN----FSAYYGEKIAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHL 57
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
P V+GKI +KG+++ + P+ ++ + R K + M+FQ P +I D + ++
Sbjct: 58 P-GFRVEGKIYFKGQDIYD-PQLDVTEYR-KRVGMVFQKPTPF---PMSIYDNVAFGPRI 111
Query: 121 HKLPVVGSILDEIVK--LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
H + ILD IV+ L K + + + LSGG +QR+ IA L+ +P +++
Sbjct: 112 HGVKSK-HILDRIVEESLKKAALWDEVKSELNKSGTRLSGGQQQRLCIARALAVEPEVIL 170
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT+ALD +I L+ EL E + +I+++THN G +AD + MY G+++E
Sbjct: 171 LDEPTSALDPIATQRIEKLLEELSENY--TIVIVTHNIGQAIRIADYIAFMYRGELIEYG 228
Query: 239 PVEEIFDNPLHPYTQGLL 256
P EI + P + T+ L
Sbjct: 229 PTREIVERPKNRLTEEYL 246
>pir||H82377 ABC transporter, ATP-binding protein VCA1101 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658548|gb|AAF96993.1| (AE004435) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 486
Score = 121 bits (300), Expect = 1e-26
Identities = 75/236 (31%), Positives = 126/236 (52%), Gaps = 6/236 (2%)
Query: 26 IDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPEREM 85
++ +SF++ + L ++GETG GKS+ A AI+ LP +GKI G+ + + E
Sbjct: 46 VESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQYQHQRTQAER 105
Query: 86 RKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDP 145
+ GK++A++ Q+P +LNP+ +Q+ E VH+L V+G+ +
Sbjct: 106 EALWGKQLAVLPQEPWHALNPIMRAGEQVAE---VHRL-VMGNHAASAALTDSAFQQVAL 161
Query: 146 EKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKF 205
+ + YP +LSGGM QRV + LLIADEPT LD + + QI+ L+ +
Sbjct: 162 HQDLSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALL--QAQLT 219
Query: 206 ETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPR 261
++L ITH+ V ++ ++VM G + E P +++ +P YT+ L+ A PR
Sbjct: 220 RGALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINADPR 275
Score = 88.2 bits (215), Expect = 1e-16
Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 28/227 (12%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+GEPL+ ++N+ + RG D +SF + GEIL + G++GCGKS A ++ LL
Sbjct: 285 TGEPLLTVDNIAMH----RGEKCLFDSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLK 340
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ +G+I L +P + K+ +QDP ++L T++ + ++ + H
Sbjct: 341 PS---QGRI----HRLQAIPLGKALKL--------YQDPPSALAKSVTLQTLLEDVCRQH 385
Query: 122 KLPVVGSILDEIVKLLKMVKI-PDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
+ +I +LL+ + + P+ R + ++SGG QR I L +P+LL+AD
Sbjct: 386 SVE-----RSQIPRLLERLALSPNLLSRKAN---QVSGGELQRFAILRALLTRPTLLVAD 437
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVV 227
EPT+ LD A + L++EL ++ +++LI+H+ + + RV+
Sbjct: 438 EPTSRLDPITAASTLQLIIELTQEIGCALVLISHDKLALEKTCHRVL 484
>pir||B70483 ABC transporter - Aquifex aeolicus >gi|2984332|gb|AAC07853.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 253
Score = 120 bits (299), Expect = 2e-26
Identities = 84/256 (32%), Positives = 143/256 (55%), Gaps = 13/256 (5%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
+ +V++E++Y + I R ++K V+F + KGEI ++IG +G GK+ K I+ L
Sbjct: 2 DEVVRLEHIYKE-IEGRVILK---DVNFSVYKGEIFSIIGGSGSGKTSITKLIVGLWKPT 57
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
KGK++ +N+ EL E+ ++R K I +FQ+ +L + + + + + H
Sbjct: 58 ---KGKVLVFRKNVPELSGLELDELR-KNIGYVFQEG--ALFDSYRVWENVVFYYLEHGK 111
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ ++ LK+V + E + YP EL GGMR+RV IA ++ +P L+I DEPT
Sbjct: 112 HNKEELRKMALENLKLVNVD--ESVLDLYPSELFGGMRKRVAIARAIATRPQLIIYDEPT 169
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
+ LD I L+LELR K T+ L++TH+ ++DRV+V+ G+++ I +E+
Sbjct: 170 SGLDPITSRVIDKLILELRNKTGTTSLVVTHDMISAFTISDRVMVIKNGEIIAIGKPDEV 229
Query: 244 FDNPLHPYTQGLLRAL 259
D P HPY Q + A+
Sbjct: 230 IDYP-HPYIQEFVGAI 244
>gb|AAA26354.1| (M96263) phnK [Sinorhizobium meliloti]
Length = 258
Score = 118 bits (292), Expect = 1e-25
Identities = 80/261 (30%), Positives = 136/261 (51%), Gaps = 8/261 (3%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-RL 59
MS PL+K+ ++ + + G VSF++ GE+LA++GE+G GK+ + RL
Sbjct: 1 MSAVPLLKVSDVSKFYGSRIGC----RNVSFELYPGEVLAIVGESGSGKTTLLSCLSTRL 56
Query: 60 LPRNAIVKGKIIY-KGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
+P + IV+ + + R+L + E E R + + + Q+P L + +GE
Sbjct: 57 MPTSGIVEYHMRDGQYRDLARMSEAERRFLMRTDWGFVHQNPADGLRMTVSAGANVGERL 116
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
G+I L+ V+I E R+ P SGGMRQR+ IA L P L+
Sbjct: 117 MAVGDRHYGNIRAAAGDWLRRVEIE--EDRIDDQPRAFSGGMRQRLQIARNLVTSPRLVF 174
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT LDV++QA++++L+ L + +++TH+ V ++ R++VM G V+E
Sbjct: 175 MDEPTGGLDVSVQARLLDLVRGLVHDLGLAAVIVTHDLAVARLLSHRMMVMKDGAVIEQG 234
Query: 239 PVEEIFDNPLHPYTQGLLRAL 259
+ + D+P PYTQ L+ ++
Sbjct: 235 LTDRVLDDPREPYTQLLVSSI 255
>gb|AAC67220.1| (U78968) ATPase protein DppD [Streptococcus pyogenes]
Length = 267
Score = 118 bits (292), Expect = 1e-25
Identities = 76/241 (31%), Positives = 135/241 (55%), Gaps = 19/241 (7%)
Query: 4 EPLVKIENLYIDFITDRGVVKA-----IDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
E L+ I++L I F +K I ++ +++KGE+LA+IG +G GKS+ A AIM
Sbjct: 3 ETLLSIKDLSITFTQYGRFLKPFQSTPIQALNLEVKKGELLAIIGASGSGKSLLAHAIMD 62
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
+LP+NA V G +IY+G++ L + ++++RGKE+ +I Q + L+P ++ Q+
Sbjct: 63 ILPKNAAVTGDMIYRGQS---LTSKRIKQLRGKEMTLIPQS-VNYLDPSMKVKHQV---- 114
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+L + + L + + + + + YPF+LSGGM +RV+ +S SL+I
Sbjct: 115 ---RLGISENAKATQEGLFQQFGLKESDGDL--YPFQLSGGMLRRVLFTTCVSDTVSLII 169
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPT L +++ + +K S++ ITH+ +++ADR+ + G+ +E A
Sbjct: 170 ADEPTPGLHPDALQMVLDQLRSFADK-GISVIFITHDIVAASQIADRITIFKEGKAIETA 228
Query: 239 P 239
P
Sbjct: 229 P 229
>emb|CAB65561.1| (AL136058) probable amino acid ABC transporter protein, ATP-binding
component. [Streptomyces coelicolor A3(2)]
Length = 261
Score = 117 bits (290), Expect = 2e-25
Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 26/264 (9%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
SGE L+++E + F G +D + F + G+ + LIG +G GK+ + +M LL
Sbjct: 17 SGE-LIRLEQVTKRF----GDNTVLDHLDFSVDAGKHVTLIGPSGSGKTTILRLLMTLLK 71
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ +G I G+ L E+E R++R K+I M+FQ F + M + +
Sbjct: 72 PD---EGTITVDGQKLFPATEKERREVR-KQIGMVFQQ--------FNLFPNMSVLRNIT 119
Query: 122 KLPV--VGSILDEIVK----LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
+ PV +G DE V+ LL MV + D + + P +LSGG +QRV IA L+ +P
Sbjct: 120 EAPVTVLGMPKDEAVERAKGLLDMVGLAD---KCDARPAQLSGGQQQRVAIARALAMRPK 176
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
+L+ DE T+ALD + A +++L+ ++ + ++L +TH +++D+V++ +G+V+
Sbjct: 177 VLLLDEVTSALDPELVAGVLDLLRDIARSTDITMLCVTHEMNFARDISDQVLMFDSGRVI 236
Query: 236 EIAPVEEIFDNPLHPYTQGLLRAL 259
E E+IF P H T+ L A+
Sbjct: 237 EAGAPEKIFSEPEHDRTREFLSAV 260
>pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB) homolog -
Lyme disease spirochete >gi|2688112|gb|AAC66606.1|
(AE001132) phosphate ABC transporter, ATP-binding
protein (pstB) [Borrelia burgdorferi]
Length = 260
Score = 114 bits (282), Expect = 2e-24
Identities = 82/255 (32%), Positives = 141/255 (55%), Gaps = 18/255 (7%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL--LP 61
E +++ ENL + F TD KA++ ++ I K I ALIG +GCGKS + + R+ L
Sbjct: 11 EVIIETENLNL-FYTD---FKALNKINMKILKNSITALIGPSGCGKSTFLRTLNRMNDLV 66
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNP-VFTIEDQMGEMFKV 120
++G +IY+G+N+ ++ ++R K I M+FQ P NP + +I D + K+
Sbjct: 67 EGIKIEGNVIYEGKNIYS-NNFDILELRRK-IGMVFQTP----NPFLMSIYDNISYGPKI 120
Query: 121 HKLPVVGSILDEIVK--LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
H LDEIV+ L K + + ++ + LSGG +QR+ IA L+ +P++++
Sbjct: 121 HGTKDKKK-LDEIVEQSLKKSALWNEVKDKLHTNALSLSGGQQQRLCIARTLAIEPNVIL 179
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT+ALD +I L++ L+E + +I+++THN ++DR G + E +
Sbjct: 180 MDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCIEEES 237
Query: 239 PVEEIFDNPLHPYTQ 253
+E+F NP + T+
Sbjct: 238 STDELFFNPKNTKTE 252
>gi|10955047 ophD [Agrobacterium tumefaciens] >gi|7445601|pir||S77575
oligopeptide transport protein homolog ophD -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215734|gb|AAC44511.1| (AF242881) ophD
[Agrobacterium tumefaciens]
Length = 259
Score = 113 bits (280), Expect = 3e-24
Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 3/259 (1%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ L+ I NL ID + +D VS ++ +G++L LIGE+G GKS A + L
Sbjct: 1 MTASTLLDIRNLRIDAASRTNPTLIVDDVSLEVCRGKVLGLIGESGAGKSTIGLAALGYL 60
Query: 61 -PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P ++ G + + G +L E + R RG+ IA + Q + NP F + DQ+ E
Sbjct: 61 RPGTRLLSGSVTFDGVDLFTRTEAQHRLFRGRRIAYVAQSAAAAFNPAFRLIDQLVEASL 120
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+ P ++ L P+ E + G L +P L+I
Sbjct: 121 RERRP--NNVRHRAGNGLARSSRPEREDNCDALSSRSVGRTVAARHDRNGLCGRPDLIIF 178
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEPTTALD+ Q + + + T+ + I+H+ +VA++AD + V+ G+ VE P
Sbjct: 179 DEPTTALDIATQRDVFTAIRKAIAVEATAAIYISHDLPLVADIADDIHVLRNGRSVERGP 238
Query: 240 VEEIFDNPLHPYTQGLLRA 258
I +P PYT+ L A
Sbjct: 239 AVTIMRDPAQPYTKALTSA 257
>pir||C75369 amino acid ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459415|gb|AAF11206.1|AE002008_1 (AE002008) amino
acid ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 265
Score = 112 bits (277), Expect = 7e-24
Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 24/251 (9%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
GEP++ +N+ F G A+ GV+ +R+GE++ +IG +G GKS + I L P
Sbjct: 22 GEPIIVAQNVQKHF----GTFHALRGVNLTVRQGEVVVIIGPSGSGKSTFIRTINALDPH 77
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG----EMF 118
+ G I G L R + IR +E+ M+FQ +L P T+ D + +
Sbjct: 78 DG---GSITVDGLPLQGA--RNLDAIR-REVGMVFQS--FNLFPHLTVLDNITLAPTRVR 129
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
V K LD LL+ V I E++ +P +LSGG +QRV IA L+ +P +++
Sbjct: 130 GVDKAQAQARGLD----LLRRVGI---EEQAYKFPAQLSGGQQQRVAIARALAMEPKIML 182
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT+ALD + +++++M EL T +L++TH G E+ADR++ G +VE
Sbjct: 183 FDEPTSALDPEMIKEVLDVMKELARTGMT-MLVVTHEMGFAREVADRILFFDQGNIVEDT 241
Query: 239 PVEEIFDNPLH 249
E + NP H
Sbjct: 242 TPEAFYQNPQH 252
>dbj|BAB06710.1| (AP001517) phosphate ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 278
Score = 112 bits (277), Expect = 7e-24
Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 14/257 (5%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL- 59
+ GEP V E D G A+ ++ I + E+ A+IG +GCGKS K + R+
Sbjct: 24 IQGEPTVAYETR--DLNLWYGKDHALKNINLSIYEKEVTAIIGPSGCGKSTYLKTLNRMV 81
Query: 60 -LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
L + + G I Y+GRN+L+ ++ ++R + + M+FQ P +F D +
Sbjct: 82 ELVPSVRISGNISYRGRNILD-KSFQVEELRTR-VGMVFQKPNPFPKSIF---DNVAYGP 136
Query: 119 KVHKLPVVGSILDEIV-KLLKMVKIPDPEK-RVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
++H + IL EIV + L+ I D K R+ + LSGG +QR+ IA L+ +P +
Sbjct: 137 RIHGIRNK-KILSEIVERSLRGAAIWDEVKDRLHENAYGLSGGQQQRLCIARCLAIEPDV 195
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
++ DEPT+ALD +I L+ EL++++ SI+++THN A ++D+ G+VVE
Sbjct: 196 ILMDEPTSALDPKSTLKIEELIQELKKEY--SIIIVTHNMQQAARISDKTAFFLNGEVVE 253
Query: 237 IAPVEEIFDNPLHPYTQ 253
+ IF NP T+
Sbjct: 254 YDSTDIIFSNPSDKRTE 270
>pir||T34822 ABC-transporter ATP binding protein - Streptomyces coelicolor
>gi|2815356|emb|CAA16479.1| (AL021530) ABC-transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 230
Score = 111 bits (276), Expect = 9e-24
Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 10/233 (4%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRN 63
E +V++E++ + D V A+ GVSFD+ +GE++AL G +G GK+ + L +
Sbjct: 7 ETMVRVEDVRKSYGRDSAAVHALRGVSFDVPRGELIALKGRSGSGKTTLLNIVGGLDTPD 66
Query: 64 AIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
A G++ GR+L EL E + +R + +FQ L P+ T + +G ++ +
Sbjct: 67 A---GRVEVDGRDLAELDEDGLLALRRDRVGFVFQS--FGLIPILTAAENVGVPMRLRRA 121
Query: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
+ + LL +V + D P E+SGG +QRV IA L+ P+LLIADEPT
Sbjct: 122 -AAREREERVELLLSLVGLAD---HAAQRPGEMSGGQQQRVAIARALANNPALLIADEPT 177
Query: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
LD +M L+ + + + L+ TH+ + ++ADRV+ + G++VE
Sbjct: 178 GQLDAETGHSVMELLRAVVRSEQVTALVATHD-ATLLDLADRVLELRDGEIVE 229
>pir||C81179 spermidine/putrescine ABC transporter, ATP-binding protein NMB0610
[imported] - Neisseria meningitidis (group B strain
MD58) >gi|7225840|gb|AAF41037.1| (AE002416)
spermidine/putrescine ABC transporter, ATP-binding
protein [Neisseria meningitidis MC58]
Length = 419
Score = 111 bits (275), Expect = 1e-23
Identities = 74/251 (29%), Positives = 131/251 (51%), Gaps = 19/251 (7%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
S +P +KI+ L F G A+D + DI + EI AL+G +G GKS + + +
Sbjct: 53 SAKPYLKIQGLVKKF----GDNYAVDNIDLDIYQHEIFALLGSSGSGKSTLLRMLAGMES 108
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
N +GKII G+++ +L + + I M+FQ +L P T+E + K
Sbjct: 109 PN---QGKIILDGQDITKLAPYD------RPINMMFQS--YALFPHMTVEQNIAFGLKQD 157
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
K+P G I + ++L++V++ K K P +LSGG +QR+ +A L+ +P +L+ DE
Sbjct: 158 KMPK-GEIAARVEEMLRLVQMT---KFAKRKPHQLSGGQQQRIALARSLAKRPKILLLDE 213
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
P ALD ++ Q ++ E+ + +++TH+ MA R+ +M GQ+ ++
Sbjct: 214 PLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSDGQLQQVGTPS 273
Query: 242 EIFDNPLHPYT 252
+++D P +T
Sbjct: 274 DVYDYPNSRFT 284
>pir||G83607 polyamine transport protein PotG PA0302 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946147|gb|AAG03691.1|AE004468_3 (AE004468)
polyamine transport protein PotG [Pseudomonas
aeruginosa]
Length = 384
Score = 110 bits (273), Expect = 2e-23
Identities = 78/245 (31%), Positives = 130/245 (52%), Gaps = 21/245 (8%)
Query: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
E LVKI+ + F A+D VS I KGEI AL+G +G GKS ++R+L
Sbjct: 20 EVLVKIDRVTKQF----DETLAVDTVSLTINKGEIFALLGGSGSGKST----LLRMLAGF 71
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHK 122
+G+I G+++ +LP E + I M+FQ +L P ++ + K
Sbjct: 72 ERPTEGRIFLDGQDITDLPPYE------RPINMMFQS--YALFPHMSVAQNIAFGLKQDG 123
Query: 123 LPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEP 182
LP I + + ++LK+V + KR P +LSGG RQRV +A L+ +P LL+ DEP
Sbjct: 124 LPKA-EIDERVAEMLKLVHMTQYAKRK---PHQLSGGQRQRVALARSLAKRPKLLLLDEP 179
Query: 183 TTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEE 242
ALD +++Q+ ++E+ E+ + +++TH+ MA R+ +M+ G + +I +
Sbjct: 180 MGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMD 239
Query: 243 IFDNP 247
I++ P
Sbjct: 240 IYETP 244
>pir||H71241 probable multiple sugar-binding transport ATP-binding protein -
Pyrococcus horikoshii >gi|3256580|dbj|BAA29263.1|
(AP000001) 375aa long hypothetical multiple
sugar-binding transport ATP-binding protein [Pyrococcus
horikoshii]
Length = 375
Score = 109 bits (269), Expect = 6e-23
Identities = 72/263 (27%), Positives = 138/263 (52%), Gaps = 19/263 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M G VK+ N++ F G V A+ +S +I+ GE L L+G +GCGK+ T + I L
Sbjct: 1 MIGMAEVKLINIWKRF----GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRMIAGL- 55
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMR-KIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
+G+I Y NL+ PE+ + + +++AM+FQ +L P T+ D + K
Sbjct: 56 --EEPTRGQI-YIEDNLVADPEKGVFVPPKERDVAMVFQS--YALYPHMTVYDNIAFPLK 110
Query: 120 VHKLPV--VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ K+P + + E+ ++L + ++ + P ELSGG RQRV + + +P +
Sbjct: 111 LRKVPKQEIDKRVREVAEMLGLTEL------LNRKPRELSGGQRQRVALGRAIIRRPKVF 164
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEP + LD ++ ++ + +L+ + + + +TH+ M DR+ VM G++ ++
Sbjct: 165 LMDEPLSNLDAKLRVKMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNKGELQQV 224
Query: 238 APVEEIFDNPLHPYTQGLLRALP 260
+E++ P++ + G + + P
Sbjct: 225 GTPDEVYYKPVNTFVAGFIGSPP 247
>gb|AAD23570.1|AF121946_1 (AF121946) maltose transport protein MalK [Thermococcus litoralis]
Length = 372
Score = 109 bits (269), Expect = 6e-23
Identities = 72/263 (27%), Positives = 137/263 (51%), Gaps = 22/263 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+G LV + ++ G V A+ +S +++ GE + L+G +GCGK+ T + I L
Sbjct: 1 MAGVRLVDVWKVF-------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMR-KIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
+ +G+I Y G L+ PE+ + + ++IAM+FQ +L P T+ D + K
Sbjct: 54 EPS---RGQI-YIGDKLVADPEKGIFVPPKDRDIAMVFQS--YALYPHMTVYDNIAFPLK 107
Query: 120 VHKLP--VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ K+P + + E+ +LL + ++ + P ELSGG RQRV + + KP +
Sbjct: 108 LRKVPRQEIDQRVREVAELLGLTEL------LNRKPRELSGGQRQRVALGRAIVRKPQVF 161
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEP + LD ++ ++ + +L+ + + + +TH+ M DR+ VM G + ++
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 238 APVEEIFDNPLHPYTQGLLRALP 260
+E++D P + + G + + P
Sbjct: 222 GSPDEVYDKPANTFVAGFIGSPP 244
>gb|AAD24578.1|AF126010_1 (AF126010) trehalose/maltose transport ATP-hydrolyzing subunit MalK
[Thermococcus litoralis]
Length = 372
Score = 109 bits (269), Expect = 6e-23
Identities = 72/263 (27%), Positives = 137/263 (51%), Gaps = 22/263 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+G LV + ++ G V A+ +S +++ GE + L+G +GCGK+ T + I L
Sbjct: 1 MAGVRLVDVWKVF-------GEVTAVRELSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMR-KIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
+ +G+I Y G L+ PE+ + + ++IAM+FQ +L P T+ D + K
Sbjct: 54 EPS---RGQI-YIGDRLVADPEKGIFVPPKDRDIAMVFQS--YALYPHMTVYDNIAFPLK 107
Query: 120 VHKLP--VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ K+P + + E+ +LL + ++ + P ELSGG RQRV + + KP +
Sbjct: 108 LRKVPRQEIDQRVREVAELLGLTEL------LNRKPRELSGGQRQRVALGRAIVRKPQVF 161
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEP + LD ++ ++ + +L+ + + + +TH+ M DR+ VM G + ++
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 238 APVEEIFDNPLHPYTQGLLRALP 260
+E++D P + + G + + P
Sbjct: 222 GSPDEVYDKPANTFVAGFIGSPP 244
>pir||G81926 probable polyamine permease ATP-binding protein NMA0816 [imported]
- Neisseria meningitidis (group A strain Z2491)
>gi|7379535|emb|CAB84098.1| (AL162754) putative
polyamine permease ATP-binding protein [Neisseria
meningitidis Z2491]
Length = 374
Score = 108 bits (268), Expect = 7e-23
Identities = 73/251 (29%), Positives = 131/251 (52%), Gaps = 19/251 (7%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
S +P ++I+ L F G A+D + DI + EI AL+G +G GKS + + +
Sbjct: 8 STKPYLQIQGLVKKF----GDNYAVDNIDLDIYQHEIFALLGSSGSGKSTLLRMLAGMEN 63
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
N +GKII G+++ +L + + I M+FQ +L P T+E + K
Sbjct: 64 PN---QGKIILDGQDITKLAPYD------RPINMMFQS--YALFPHMTVEQNIAFGLKQD 112
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
K+P G I + ++L++V++ K K P +LSGG +QR+ +A L+ +P +L+ DE
Sbjct: 113 KMPK-GEIAARVEEMLRLVQMT---KFAKRKPHQLSGGQQQRIALARSLAKRPKILLLDE 168
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
P ALD ++ Q ++ E+ + +++TH+ MA R+ +M GQ+ ++
Sbjct: 169 PLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSDGQLQQVGTPS 228
Query: 242 EIFDNPLHPYT 252
+++D P +T
Sbjct: 229 DVYDYPNSRFT 239
>emb|CAC17497.1| (AL450432) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor]
Length = 541
Score = 108 bits (268), Expect = 7e-23
Identities = 64/237 (27%), Positives = 127/237 (53%), Gaps = 8/237 (3%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-RL 59
+ +PL +I L + + +G + + +G++L ++G +G GKS A +++ +
Sbjct: 10 VGADPLAEISGLSLGPV--QGGPPVLHDARLTVPRGQVLGVVGRSGSGKSSLAYSLLGHV 67
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
P + G + G + + + R++RG+ ++ + QDP ++LNP I Q+GE +
Sbjct: 68 RPGLEVRSGTVRVAGLDPFD--RADARRLRGRVVSFLGQDPASALNPALRIGTQIGEAVR 125
Query: 120 VHKLPV--VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ P + ++ +LL V++P + P ++SGG QRV +A+ L+ P+LL
Sbjct: 126 LRS-PARRAHEVRAQVEELLLSVRLPADRAFRRRLPSQVSGGQAQRVALALALAGTPALL 184
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+ DEPT+ LD + ++ L+ E+ + + LL++H+P VA +A VV + G++
Sbjct: 185 VLDEPTSGLDTVLADRMRGLLAEVLSGGDRAALLVSHDPAWVASVAHEVVRLEGGRI 241
Score = 104 bits (257), Expect = 1e-21
Identities = 72/236 (30%), Positives = 116/236 (48%), Gaps = 15/236 (6%)
Query: 21 GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLEL 80
G V + GVS + G A++G +G GK+ A+ + L R +E
Sbjct: 306 GRVSVLHGVSLTVPAGSCTAVVGPSGSGKTTLARCLAGLHR-----------PARGTVEW 354
Query: 81 PEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVKLLKMV 140
E G + ++ QD +LNP ++ + M + + E +LL +V
Sbjct: 355 REDGAEGGHGAPVQLVAQDARGALNPRESVRAAL--MRPLGRRHSAADAAREAARLLDLV 412
Query: 141 KIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLE 200
+ D + + P ELSGG RQRV +A L+A+P +L+ DE T+ALD + I+ L+
Sbjct: 413 SL-DADLLARR-PGELSGGQRQRVALARTLAAQPRVLVCDEITSALDRETASGILALLGS 470
Query: 201 LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLL 256
LR +++++TH+ A A+R VV+ AG+V E PV+ + P HP T+ LL
Sbjct: 471 LRRTLGVTVVMVTHDLTAAAHHAERAVVLDAGRVAEAGPVDRVLTAPEHPVTRALL 526
>pir||A64703 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2314642|gb|AAD08506.1| (AE000646) ABC
transporter, ATP-binding protein (HI1087) [Helicobacter
pylori 26695]
Length = 261
Score = 108 bits (267), Expect = 1e-22
Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 22/236 (9%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+ + L+++++L+ F G GVSF + KGE++A++G +G GKS + ++ L
Sbjct: 5 NNQVLIEVKDLHSAF----GSTIIHRGVSFSVHKGEVMAILGGSGSGKSTLLRCMILL-- 58
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQ-----DPLTSLNPVFTIEDQMGE 116
N KG+++ G ++ +L E E +KI + + FQ LT L V + +Q G
Sbjct: 59 -NRPTKGEVLLFGEDIWKLKEAEQQKIFNR-CGICFQFGALYSSLTVLENVGVMLEQYGA 116
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
K I++EI K+ + K+ P + YP+ELSGGM++RV IA ++ P +
Sbjct: 117 YSK--------KIVEEISKMW-IEKVGLPPRAYHLYPYELSGGMKKRVGIARAMATNPEI 167
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAG 232
L DEPT+ LD + L++ L+E + ++++ITH+ V + DR +++ G
Sbjct: 168 LFLDEPTSGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDG 223
>sp|P40735|YBXA_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBXA
>gi|7445713|pir||E69751 ABC transporter (ATP-binding
protein) homolog ybxA - Bacillus subtilis
>gi|1644202|dbj|BAA10983.1| (D64126) unknown [Bacillus
subtilis] >gi|2632412|emb|CAB11921.1| (Z99104) alternate
gene name: ybaD~similar to ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 281
Score = 106 bits (261), Expect = 5e-22
Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 20/247 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL- 59
M+ L+ +E++ + D +A+DGVS + +GE LA++G G GKS A+A+ L
Sbjct: 1 MNQNQLISVEDIVFRYRKD-AERRALDGVSLQVYEGEWLAIVGHNGSGKSTLARALNGLI 59
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
LP + G I G ++L E + ++R K+I M+FQ+P T+ D + +
Sbjct: 60 LPES----GDIEVAG---IQLTEESVWEVR-KKIGMVFQNPDNQFFGT-TVRDDVAFGLE 110
Query: 120 VHKLPVVGSI--LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ +P I +D VK + M D E P LSGG +QRV IA +++A+P ++
Sbjct: 111 NNGVPREEMIERVDWAVKQVNMQDFLDQE------PHHLSGGQKQRVAIAGVIAARPDII 164
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
I DE T+ LD + +++ + L+E+ +++ ITH+ A+ ADR++VM G+
Sbjct: 165 ILDEATSMLDPIGREEVLETVRHLKEQGMATVISITHDLNEAAK-ADRIIVMNGGKKYAE 223
Query: 238 APVEEIF 244
P EEIF
Sbjct: 224 GPPEEIF 230
>pir||H71817 probable amino acid ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155970|gb|AAD06934.1| (AE001558) putative amino
acid abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 261
Score = 106 bits (261), Expect = 5e-22
Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 22/236 (9%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+ + L+++++L+ F G GVSF + KGE++A++G +G GKS + ++ L
Sbjct: 5 NNQVLIEVKDLHSAF----GSTIIHRGVSFSVHKGEVMAILGGSGSGKSTLLRCMILL-- 58
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQ-----DPLTSLNPVFTIEDQMGE 116
N KG+++ G ++ +L E E +KI + + FQ LT L V + +Q G
Sbjct: 59 -NRPTKGEVLLFGEDIWKLKEAEQQKIFNR-CGICFQFGALYSSLTVLENVGVMLEQYGA 116
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
K I++EI K+ + ++ P + YP+ELSGGM +RV IA ++ P +
Sbjct: 117 YSK--------KIVEEISKMW-IERVGLPPRAYHLYPYELSGGMTKRVGIARAMATNPEI 167
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAG 232
L DEPT+ LD + L++ L+E + ++++ITH+ V + DR +++ G
Sbjct: 168 LFLDEPTSGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDG 223
>pir||D82147 amino acid ABC transporter, ATP-binding protein VC1864 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656394|gb|AAF95012.1| (AE004262) amino acid ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 256
Score = 105 bits (259), Expect = 8e-22
Identities = 74/260 (28%), Positives = 139/260 (53%), Gaps = 30/260 (11%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ P ++I+NL+ F G + + G+S +KG+++++IG +G GKS + I L
Sbjct: 1 MTDVPALEIKNLHKTF----GQNEVLKGISLQAQKGDVISIIGSSGSGKSTFLRCINLLE 56
Query: 61 PRNA---IVKGKIIY----KGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQ 113
A VKG++I + + E+++++IR + +AM+FQ F +
Sbjct: 57 TPTAGEIWVKGELIQMKTTRQGTVQPAKEKQVQRIRSR-LAMVFQS--------FNLWSH 107
Query: 114 MGEMFKVHKLPV------VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIA 167
M + V + PV +++ +LL+ V + + R YP LSGG +QR IA
Sbjct: 108 MTVLENVIEAPVHVLGVPKAQAIEQAERLLRKVGLYE---RKDYYPGHLSGGQQQRAAIA 164
Query: 168 MMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVV 227
L+ +P +++ DEPT+ALD + +++ +M +L E+ T +L++TH ++++ V+
Sbjct: 165 RALAVEPEVMLFDEPTSALDPELVGEVLGVMRDLAEEGRT-MLVVTHEMAFARDVSNHVM 223
Query: 228 VMYAGQVVEIAPVEEIFDNP 247
++ G+V E E++F NP
Sbjct: 224 FLHQGKVEEQGKPEKLFKNP 243
>sp|Q44613|LOLD_BUCAP LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|2120388|pir||I40068 probable ABC-type transport
protein - Buchnera aphidicola >gi|862629|gb|AAC05797.1|
(U11045) OrfC [Buchnera aphidicola]
>gi|1094932|prf||2107191B ORF C [Buchnera aphidicola]
Length = 229
Score = 101 bits (250), Expect = 1e-20
Identities = 68/215 (31%), Positives = 114/215 (52%), Gaps = 9/215 (4%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ +++ NL F + ++ ++ +S IRKG+I + G++G GKS + L
Sbjct: 1 MNNNIILQCINLTKSFYRKKEEIRTLNKISLKIRKGDITFITGKSGSGKSTLLHLLGGL- 59
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G I++ G +L + E+ K+R ++ IFQ L+ F + + + +
Sbjct: 60 --DKPTSGSILFDGVSLHSMSSNEIAKLRNLKLGFIFQFHHLLLD--FNVLENIAIPSLI 115
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
K + S ++ ++LK V + EK++ YP ELSGG RQRV IA L +PSL+IAD
Sbjct: 116 SKKSIQES-KEKSYEILKKVHL---EKKINKYPSELSGGERQRVAIARALVNQPSLVIAD 171
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHN 215
EPT+ LD I +L+ EL TS L+++H+
Sbjct: 172 EPTSHLDKNNAKIIFDLIFELNSNLNTSFLIVSHD 206
>pir||F82201 spermidine/putrescine ABC transporter, ATP-binding protein VC1428
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9655926|gb|AAF94585.1| (AE004221)
spermidine/putrescine ABC transporter, ATP-binding
protein [Vibrio cholerae]
Length = 377
Score = 101 bits (249), Expect = 1e-20
Identities = 61/251 (24%), Positives = 133/251 (52%), Gaps = 31/251 (12%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDG------VSFDIRKGEILALIGETGCGKSVTAKAI 56
G+P++++ G+ K+ DG ++ D+ GE L ++G +GCGK+ + I
Sbjct: 14 GKPVIRLS----------GISKSFDGKEIIGNLNLDVNHGEFLTILGPSGCGKTTVLRMI 63
Query: 57 MRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE 116
+ +G+I+ +++ ++P + + + +FQ +L P T+ + +
Sbjct: 64 AGFETAD---QGQILLDDQDVTQVPAEQ------RHVNTVFQS--YALFPHMTVFENVAF 112
Query: 117 MFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
++ K+P I +++ L+MV++ + +R P +LSGG +QR+ IA + KP +
Sbjct: 113 GLRMQKVPQ-SEIEPRVMEALRMVRLAEMAQRK---PHQLSGGQQQRIAIARAVVNKPKV 168
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
L+ DE +ALD ++ Q+ + + +L+ + + + +TH+ M+DR++VM +G++ +
Sbjct: 169 LLLDESLSALDYKLRKQMQSELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRSGKIEQ 228
Query: 237 IAPVEEIFDNP 247
EI+++P
Sbjct: 229 DGSPREIYEDP 239
>pir||A82184 ABC transporter, ATP-binding protein VC1568 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656076|gb|AAF94722.1| (AE004234) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 233
Score = 101 bits (249), Expect = 1e-20
Identities = 80/245 (32%), Positives = 125/245 (50%), Gaps = 23/245 (9%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+S PLV+++ + + + + VVKA+DGV IR GE LA++G +G GKS + L
Sbjct: 4 LSPAPLVELQQICKHYTSGQNVVKALDGVDLTIRHGEFLAILGPSGSGKSTLMNVLGCLD 63
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
A G+ G + L +++ IR ++I +FQ F + + + V
Sbjct: 64 KPTA---GRYQLDGHPVDSLSTQQLAAIRNQKIGFVFQS--------FNLLEYASALDNV 112
Query: 121 HKLPVVGSILD------EIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
LP+V + + +LL V + D R+ P +LSGG +QRV IA L +P
Sbjct: 113 -ALPLVYAGVKAKDRRRRATELLTRVGLAD---RLDHKPNQLSGGQKQRVAIARALINQP 168
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+L+ADEPT ALD A+I L EL + T I+++TH+ +A+ R+V + GQV
Sbjct: 169 QILLADEPTGALDSKSGAEIEALFNELHREGRT-IIVVTHD-NELAKRTKRIVTIRDGQV 226
Query: 235 VEIAP 239
V P
Sbjct: 227 VSDEP 231
>pir||E83622 probable ATP-binding component of ABC transporter PA0184 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9946018|gb|AAG03574.1|AE004456_5 (AE004456) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 279
Score = 100 bits (246), Expect = 3e-20
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 24/231 (10%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+G PLV + F D ++AI +I +GE +A++G +GCGKS + ++ L
Sbjct: 9 TGTPLVSFRQVRKHFAVDGRRLEAIQQFDLEIGEGEFIAIVGASGCGKSTLLRLLIGL-- 66
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ G+I GR + + G E ++FQ+ L P T++ +
Sbjct: 67 -DRDYDGEIRVDGRPIAGI---------GGERGIVFQEH--RLFPWLTVQQNVA------ 108
Query: 122 KLPVVGSILDEIVKLLKM---VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
L +V L E K ++ +++ ++YP +LSGGM QRV IA L A P LL+
Sbjct: 109 -LGLVNEALGETDKAARIDEYIRLVGLHGFERAYPHQLSGGMAQRVAIARGLVASPRLLL 167
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVM 229
DEP +ALD + Q+ +L +R + + LL+TH+ +ADRVVVM
Sbjct: 168 LDEPFSALDALTRQQLQEELLAIRRRTRITTLLVTHDVEEALYLADRVVVM 218
>sp|O53899|Y986_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV0986
>gi|7445749|pir||F70821 hypothetical protein Rv0986 -
Mycobacterium tuberculosis (strain H37RV)
>gi|2916947|emb|CAA17585.1| (AL021999) hypothetical
protein Rv0986 [Mycobacterium tuberculosis]
Length = 248
Score = 99.8 bits (245), Expect = 4e-20
Identities = 71/250 (28%), Positives = 128/250 (50%), Gaps = 16/250 (6%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ +P+V++ NL F + +D ++FD GE +AL+G++G GKS I +
Sbjct: 1 MNRQPIVQLSNLSWTFREGETRRQVLDHITFDFEPGEFVALLGQSGSGKSTLLNLISGI- 59
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMG---EM 117
G + G + + ER+ R +I ++FQ +L P T+ + + E+
Sbjct: 60 --EKPTTGDVTINGFAITQKTERDRTLFRRDQIGIVFQ--FFNLIPTLTVLENITLPQEL 115
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
V + D LL+ V + D E+ ++P +LSGG +QRV I+ L+ P L+
Sbjct: 116 AGVSQRKAAVVARD----LLEKVGMADRER---TFPDKLSGGEQQRVAISRALAHNPMLV 168
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ADEPT LD ++++++L+L + ++++ TH+P + + ADRVV + G+++
Sbjct: 169 LADEPTGNLDSDTGDKVLDVLLDLTRQAGKTLIMATHSPS-MTQHADRVVNLQGGRLIPA 227
Query: 238 APVEEIFDNP 247
E D P
Sbjct: 228 VNRENQTDQP 237
>pir||S71374 hypothetical protein 2 - Zymomonas mobilis
>gi|695783|emb|CAA58842.1| (X84019) orf2 [Zymomonas
mobilis]
Length = 232
Score = 98.7 bits (242), Expect = 8e-20
Identities = 72/237 (30%), Positives = 126/237 (52%), Gaps = 12/237 (5%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+S ++++ +L F ++ + G+ +R+GEILAL+G +G GKS +AI L
Sbjct: 5 LSYNNVIEVTDLQRAFKQGEDEIQILHGIDLIVRRGEILALLGPSGAGKSTFLRAIGLL- 63
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFT-IEDQMGEMFK 119
N G I G+ + L ++E IR + ++Q L P F+ +E+ M
Sbjct: 64 -ENGFT-GSINILGQEISSLNDKERTAIRRDYLGFVYQ--FHHLLPHFSALENVMLPQLI 119
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
K P + LL +K+ E+R+K YP +LSGG +QRV +A L+ +P+L++A
Sbjct: 120 QGKSPHQAK--EHAHFLLNSLKL---EERLKHYPSQLSGGQQQRVAVARALANRPALVLA 174
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
DEPT+ LD +++ L L ++ ++ THN + +M DR+V ++ G+++E
Sbjct: 175 DEPTSNLDEATGDIVLHEFLRLVRGQGSTAIIATHNMAMARKM-DRIVTLHDGRLIE 230
>emb|CAB81857.1| (AL161691) putative ABC-transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 246
Score = 98.3 bits (241), Expect = 1e-19
Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 14/235 (5%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ + +++ ++ + G V A+D VS +R+G A++G +G GKS + L
Sbjct: 1 MTSDDAIRLSSVSRRYGAGEGTVTALDDVSLALRRGSFTAVMGPSGSGKSTLLQCAAGL- 59
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G ++ G L L +R + +R + + +FQ +L P T + ++
Sbjct: 60 --DRPTSGSVVVGGTELTGLSQRRLTLLRRERVGFVFQ--AFNLLPSLTAAQNVALPLRL 115
Query: 121 H-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+ P G + + L+ V + D R + P ELSGG +QRV +A L +P +L A
Sbjct: 116 AGRRPPRGRVREA----LRQVGLAD---RARHRPAELSGGQQQRVALARALITRPQVLFA 168
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
DEPT ALD +++ L+ + + +++++TH+P V A ADRV+ + G+V
Sbjct: 169 DEPTGALDSRTGREVLTLLRAMADGEGRTVVMVTHDP-VAASYADRVLFLVDGRV 222
>pir||E72598 probable ABC-transporter ATP-binding protein APE1253 - Aeropyrum
pernix (strain K1) >gi|5104929|dbj|BAA80243.1|
(AP000061) 306aa long hypothetical ABC-transporter
ATP-binding protein [Aeropyrum pernix]
Length = 306
Score = 97.9 bits (240), Expect = 1e-19
Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 18/237 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGV-VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
+ GE L + + RG + A+ VS + +GE+LA++G +G GK+ I +
Sbjct: 4 IGGEDLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGV 63
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDP--LTSLNPVFTIEDQMGEM 117
NA G++I G + E+R+ R + + +FQ + +L + I M
Sbjct: 64 DRPNA---GRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALA 120
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
K ++L +LL+ V + E+R YP ELSGG +QR+ +A+ L+ P ++
Sbjct: 121 GKANRL--------RGQELLRRVGLGGKERR---YPEELSGGEQQRLAVAVALANDPPII 169
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
+ADEPT LD+ +I+ ++LE +++L TH+P VA MADRV V+ G++
Sbjct: 170 VADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTHDPR-VARMADRVAVIEDGRL 225
>pir||D81263 probable ABC transport system ATP-binding protein Cj1663 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6969079|emb|CAB73650.1| (AL139079) putative ABC
transport system ATP-binding protein [Campylobacter
jejuni]
Length = 217
Score = 97.1 bits (238), Expect = 2e-19
Identities = 74/232 (31%), Positives = 123/232 (52%), Gaps = 18/232 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M + L+KI NL +F G VKA++ ++ + +GE LA++G +G GKS T I+ L+
Sbjct: 1 MMKKELIKINNLNKEF----GKVKALNNINLSVYEGEWLAIMGPSGSGKS-TLLNILSLM 55
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G+ I NL ++ E + +R ++I ++FQ F + + + V
Sbjct: 56 DTPS--SGEYILDNENLEQMDEEQKITLRREKIGLVFQQ--------FHLIPYLNALENV 105
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
S +DE + + K+ R+ P +LSGG +QRV IA L P LL+AD
Sbjct: 106 MLSQYYHSSVDEEDAKMVLEKV-GLSHRLTHLPSQLSGGEQQRVCIARALINNPELLLAD 164
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAG 232
EPT LD + ++ + +L+ + +T I+LITHNP +A+ ADR +++ G
Sbjct: 165 EPTGNLDEANEQIVLQTLQKLKNEGKT-IVLITHNPD-LAKFADRTLILQHG 214
>pir||T03479 probable ABC transporter ATP-binding protein - Rhodobacter
capsulatus >gi|3128280|gb|AAC16132.1| (AF010496)
hypothetical ABC transporter ATP-binding protein
[Rhodobacter capsulatus]
Length = 358
Score = 96.3 bits (236), Expect = 4e-19
Identities = 71/248 (28%), Positives = 125/248 (49%), Gaps = 14/248 (5%)
Query: 1 MSGEPLVKIENLYIDFITDR-GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL 59
M+ PL L +D ++ R G V A+ +SF++ +GEIL L+G +GCGKS + I +
Sbjct: 1 MTPAPLPAASWLRLDRVSRRFGAVTALAEISFNLGQGEILCLLGASGCGKSTLLRLIAGV 60
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFK 119
++ G+I+ GR L + RG I +FQD +L P ++ + + +
Sbjct: 61 ERPDS---GEIVLAGRVLAGPGRFVDPEARG--IGFMFQD--YALFPHLSVAENVAFGLR 113
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+ + + E++ + + + D YP +LSGG QRV +A L+ +P LL+
Sbjct: 114 GAPSAELKARVAEVLAVAGVSALAD------RYPHQLSGGESQRVALARALAPRPGLLLM 167
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEP + LD ++ + L L + + +L+TH+P +AD + VM AG++ +A
Sbjct: 168 DEPFSNLDQGLRDSVRAETLALLRQIGVAAILVTHDPAEALAVADHLAVMQAGKIEALAD 227
Query: 240 VEEIFDNP 247
++ P
Sbjct: 228 PRSLYHAP 235
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 95.6 bits (234), Expect = 7e-19
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 225 RVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELE-NIPGRVPNLLNPP 283
R+ VMY G+VVEI EE+ PLHPYTQ LL+A+P E NI G + + L P
Sbjct: 7 RIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELP 66
Query: 284 KGCRFHPRCKKAKEMCSKEKPKLIEVEKEHYVACHLY 320
KGC F+ RC AK++C ++ P++ ++ +HYVACHLY
Sbjct: 67 KGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHLY 103
>sp|P45171|POTA_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING PROTEIN POTA
>gi|1075318|pir||B64118 spermidine/putrescine transport
protein potA - Haemophilus influenzae (strain Rd KW20)
>gi|1574806|gb|AAC22991.1| (U32813)
spermidine/putrescine ABC transporter, ATP-binding
protein (potA) [Haemophilus influenzae Rd]
Length = 381
Score = 95.2 bits (233), Expect = 9e-19
Identities = 67/283 (23%), Positives = 139/283 (48%), Gaps = 26/283 (9%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+ +P++++ ++ + G I+ + I GE + ++G +GCGK+ + + L
Sbjct: 14 LQNKPIIELRSIKKSY----GSNTIINDFNLTINNGEFVTILGPSGCGKTTVLRLLAGL- 68
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G II G ++ +P + + I +FQ +L P TI + + ++
Sbjct: 69 --EELDSGSIILDGEDITNVPAEK------RHINTVFQS--YALFPHMTIFENVAFGLRM 118
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
K+P I +++ L+MV++ E+ P +LSGG +QR+ IA + KP +L+ D
Sbjct: 119 QKVPNE-EIKPRVLEALRMVQL---EEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLD 174
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
E +ALD ++ Q+ + L+ + + + +TH+ M+DR+V++ G++ +
Sbjct: 175 ESLSALDYKLRKQMQQELKMLQRQLGITFIFVTHDQEEAITMSDRIVLLRKGKIAQDGSP 234
Query: 241 EEIFDNPLHPYTQ------GLLRALPRGHKTER-ELENIPGRV 276
EI+++P + + + A K+E+ L N+ GR+
Sbjct: 235 REIYEDPANLFVARFIGEINVFEATVIERKSEQVVLANVEGRI 277
>pir||T35675 probable ABC-transport system ATP binding protein - Streptomyces
coelicolor >gi|2661682|emb|CAA15787.1| (AL009199)
probable ABC-transport system ATP binding protein
[Streptomyces coelicolor A3(2)]
Length = 260
Score = 95.2 bits (233), Expect = 9e-19
Identities = 76/239 (31%), Positives = 124/239 (51%), Gaps = 25/239 (10%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MS P++ + + F G V+A+ V ++ GE++AL+G+ G GKS K I +
Sbjct: 1 MSATPVLALRGVSKRF----GAVQALTDVELEVHAGEVVALVGDNGAGKSTLVKTIAGVH 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
P I +G I + GR++ + + + IA ++QD N D +G ++
Sbjct: 57 P---IDEGAIEWDGRSVSINRPHDAQSLG---IATVYQDLALCDNI-----DVVGNLYLG 105
Query: 121 HKLPVVGSILDEIV------KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKP 174
++ G +LDE+ +LL + I P R+ LSGG RQ V IA + +P
Sbjct: 106 REIRRRG-VLDEVEMERRSRELLDTLSIRIPSVRIPIA--SLSGGQRQVVAIARSMLGEP 162
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
L+I DEPT AL V AQ+++L+ LRE+ +++LI+HN V +AD+V V+ G+
Sbjct: 163 KLVILDEPTAALGVEQTAQVLDLVERLRERGH-AVILISHNMADVKAVADKVAVLRLGR 220
>gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomitans]
Length = 372
Score = 95.2 bits (233), Expect = 9e-19
Identities = 65/274 (23%), Positives = 134/274 (48%), Gaps = 21/274 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+ +P++++ ++ + G I + I GE L ++G +GCGK+ + + L
Sbjct: 5 VQNKPIIELRSITKSY----GSNTIIKDFNLTINNGEFLTILGPSGCGKTTVLRLLAGL- 59
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G II G ++ +P + + + +FQ +L P TI + + ++
Sbjct: 60 --EELDSGNIILDGEDITNVPAEK------RHVNTVFQS--YALFPHMTIFENVAFGLRM 109
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
K+P I +++ L+MV++ E+ P +LSGG +QR+ IA + KP +L+ D
Sbjct: 110 QKVPEA-EIKPRVLEALRMVQL---EEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLD 165
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
E +ALD ++ Q+ + L+ + + + +TH+ M+DR+V++ G++ +
Sbjct: 166 ESLSALDYKLRKQMQYELKVLQRQLGITFIFVTHDQEEAITMSDRIVLLRKGKIAQDGSP 225
Query: 241 EEIFDNPLHPYTQGLLRALPRGHKT--ERELENI 272
EI++ P + + + + T ER+ EN+
Sbjct: 226 REIYEEPANLFVARFIGEINVFDATVIERKSENV 259
>pir||F83203 probable ATP-binding component of ABC transporter PA3538 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949688|gb|AAG06926.1|AE004774_4 (AE004774) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 360
Score = 95.2 bits (233), Expect = 9e-19
Identities = 68/251 (27%), Positives = 128/251 (50%), Gaps = 19/251 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MS + L+ +++L + + K + + + G+I L+G +GCGK+ T +AI
Sbjct: 1 MSHDLLLNLKDLACGYASQ----KVVQDLDLHLNAGDIGCLLGPSGCGKTTTLRAIAGFE 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
P ++ G+I G ++ P + + + I M+FQD +L P ++ D +G F +
Sbjct: 57 P---VLAGQIELGGE-VISRPGFTLAPEK-RRIGMVFQD--YALFPHLSVADNVG--FGI 107
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
K P ++ E+++L+K+ + +P ELSGG +QRV +A L+ +P LL+ D
Sbjct: 108 RKHPQRERLVRELLELVKL------DHLAARHPHELSGGQQQRVALARALAPEPLLLLLD 161
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
EP + LDV ++ + + E+ + TS +L+TH+ + D + V G + +
Sbjct: 162 EPFSNLDVELRRSLSQEVREILKARGTSAILVTHDQEEAFAVCDHIGVFKEGHLEQWDTP 221
Query: 241 EEIFDNPLHPY 251
++ PL P+
Sbjct: 222 YNLYHEPLTPF 232
>dbj|BAA89347.1| (AB032934) orfC [Vibrio alginolyticus]
Length = 256
Score = 93.6 bits (229), Expect = 3e-18
Identities = 74/255 (29%), Positives = 134/255 (52%), Gaps = 20/255 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ P + I++L+ F G + + G+S KG+++++IG +G GKS + I L
Sbjct: 1 MNDVPALDIKDLHKTF----GQNEVLKGISLAAHKGDVISIIGSSGSGKSTFLRCINLLE 56
Query: 61 PRNA---IVKGKIIYKGRNL----LELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQ 113
A V G++I N + E+++++IR + +AM+FQ +L T+ +
Sbjct: 57 TPTAGEIWVNGELIQMKNNRAGESVPANEKQVQRIRSR-LAMVFQG--FNLWSHLTVLEN 113
Query: 114 MGEMFKVHKLPVV-GSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSA 172
+ E VH L V ++ LLK V + + R YP LSGG +QR IA L+
Sbjct: 114 VIEA-PVHVLGVPKAQAIENAEVLLKKVGLYE---RKDYYPGHLSGGQQQRAAIARALAV 169
Query: 173 KPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAG 232
P +++ DEPT+ALD + +++ +M +L ++ T +L++TH ++++ V+ ++ G
Sbjct: 170 DPEVMLFDEPTSALDPELVGEVLGVMRDLADEGRT-MLVVTHEMAFARDVSNHVMFLHQG 228
Query: 233 QVVEIAPVEEIFDNP 247
V E ++F NP
Sbjct: 229 LVEEQGNPAKLFTNP 243
>gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Mycoplasma bovis]
Length = 156
Score = 92.8 bits (227), Expect = 5e-18
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 192 AQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPY 251
A ++ L ++R+++ SI+LI+HN VVA+ + + VMYAG++VE ++IF NP HPY
Sbjct: 1 ASVLALFEQIRQEYNISIILISHNISVVAKFCEYIYVMYAGKIVERGTRKDIFTNPAHPY 60
Query: 252 TQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEK 311
T L+ A+P + L +I G P++ N P G F PR A E+ +++P LIE+
Sbjct: 61 TWALISAIP--ENDDERLFSIQGTPPDMANLPIGDPFAPRNDFALEIDYEKEPPLIEINS 118
Query: 312 EHYVACHL 319
H A L
Sbjct: 119 HHKAATWL 126
>gb|AAD10861.1| (U60994) orf k; putative ATP-binding cassette transport system;
similar to ATP-binding protein and to components of ABC
transport systems [Leuconostoc lactis]
Length = 247
Score = 91.7 bits (224), Expect = 1e-17
Identities = 77/259 (29%), Positives = 126/259 (47%), Gaps = 14/259 (5%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M LVKI L + G + + ++F I K ++ L+G +G GKS + + L
Sbjct: 1 MVDNDLVKISKLSKFY----GKKQVLHNINFSIPKNKVTVLLGPSGSGKSTLIRTLNGLE 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
P A G I + + + R IRGK I M+FQ N +G + KV
Sbjct: 57 PFQA---GAIEVFNQVIDSHTKNGWRDIRGK-IGMVFQSYDLFPNMSVIKNVTLGPV-KV 111
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
K V +L LLK V + + E +YP LSGG +QRV I L +PSL++ D
Sbjct: 112 QKRKV-SEVLTAARALLKEVGLAEYEN---AYPRNLSGGQKQRVAIVRALILRPSLILFD 167
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPV 240
E T +LD + ++ ++ +L + + +++++TH ++AD+VV + G++VEI
Sbjct: 168 EITASLDPEMVRGVLEILKKLADG-KLTMVVVTHEMNFAQQIADQVVFLEEGKIVEIGGG 226
Query: 241 EEIFDNPLHPYTQGLLRAL 259
++ FD P Q L ++
Sbjct: 227 QDFFDQPKTLRAQQFLESM 245
>pir||T10888 iron utilization protein C - Haemophilus influenzae
>gi|619400|gb|AAB32112.1| (S72674) HitC=iron utilization
protein [Haemophilus influenzae, type b, DL42, NTHI
TN106, Peptide, 356 aa]
Length = 356
Score = 90.5 bits (221), Expect = 2e-17
Identities = 66/252 (26%), Positives = 129/252 (51%), Gaps = 21/252 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL- 59
M PL+ ++NL F ++ V + +SF +++GEIL L+G +GCGK+ +AI
Sbjct: 6 MINNPLLTVKNLN-KFFNEQQV---LHDISFSLQRGEILFLLGASGCGKTTLLRAIAGFE 61
Query: 60 LPRNAIV--KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
P N + K ++I+ G N LP ++ + ++F N + + + G+
Sbjct: 62 QPSNGEIWLKERLIF-GENF-NLPTQQRHLGYVVQEGILFPHLNVYRNIAYGLGNGKGKN 119
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ + +++I++L + ++ D +P +LSGG +QRV +A L+ P L+
Sbjct: 120 SEEK------TRIEQIMQLTGIFELAD------RFPHQLSGGQQQRVALARALAPNPELI 167
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEP +ALD ++ QI ML+ + S + +TH+ AD++ ++ G++++I
Sbjct: 168 LLDEPFSALDEHLRQQIRQEMLQALRQSGASAIFVTHDRDEALRYADKIAIIQQGKILQI 227
Query: 238 APVEEIFDNPLH 249
++ +P H
Sbjct: 228 DTPRTLYWSPNH 239
>pir||D83271 probable ATP-binding component of ABC transporter PA2987 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949087|gb|AAG06375.1|AE004724_4 (AE004724) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 227
Score = 90.5 bits (221), Expect = 2e-17
Identities = 68/235 (28%), Positives = 113/235 (47%), Gaps = 10/235 (4%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ + ++ NL + V+ + GV ++ GE +A++G +G GKS + L
Sbjct: 1 MNDKSVLSCRNLSKSYDEGPQSVQVLSGVELNLLPGERVAIVGSSGSGKSTLLNMLGGLD 60
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+A G + G L L E +R + + ++Q L P FT + + +
Sbjct: 61 TPSA---GSVWLAGEELSALNETARGLLRNRALGFVYQ--FHHLLPEFTALENVCMPLLI 115
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIAD 180
+ P+ + +LL+ V + R+ P ELSGG RQRV IA L +P L++ D
Sbjct: 116 GRTPIAEA-RQRAAELLERVGLGH---RLSHKPAELSGGERQRVAIARALVNRPQLVLLD 171
Query: 181 EPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVV 235
EPT LD I LMLEL +TS L++TH+ + M DR++ + G+++
Sbjct: 172 EPTGNLDQHTAQGIQELMLELSRSLQTSFLVVTHDLQLAGHM-DRILRLEEGRLI 225
>sp|P44513|HITC_HAEIN IRON(III)-TRANSPORT ATP-BINDING PROTEIN HITC
>gi|1075080|pir||E64048 nucleotide-binding protein sfuC
homolog - Haemophilus influenzae (strain Rd KW20)
Length = 356
Score = 90.1 bits (220), Expect = 3e-17
Identities = 66/252 (26%), Positives = 129/252 (51%), Gaps = 21/252 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL- 59
M PL+ ++NL F ++ V + +SF +++GEIL L+G +GCGK+ +AI
Sbjct: 6 MINNPLLTVKNLN-KFFNEQQV---LHDISFSLQRGEILFLLGSSGCGKTTLLRAIAGFE 61
Query: 60 LPRNAIV--KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
P N + K ++I+ G N LP ++ + ++F N + + + G+
Sbjct: 62 QPSNGEIWLKERLIF-GENF-NLPTQQRHLGYVVQEGVLFPHLNVYRNIAYGLGNGKGKN 119
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ + +++I++L + ++ D +P +LSGG +QRV +A L+ P L+
Sbjct: 120 SEEK------TRIEQIMQLTGIFELAD------RFPHQLSGGQQQRVALARALAPNPELI 167
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEP +ALD ++ QI ML+ + S + +TH+ AD++ ++ G++++I
Sbjct: 168 LLDEPFSALDEHLRQQIRQEMLQALRQSGASAIFVTHDRDESLRYADKIAIIQQGKILQI 227
Query: 238 APVEEIFDNPLH 249
++ +P H
Sbjct: 228 DTPRTLYWSPNH 239
>gb|AAC21775.1| (U32695) iron(III) ABC transporter, ATP-binding protein (hitC)
[Haemophilus influenzae Rd]
Length = 351
Score = 90.1 bits (220), Expect = 3e-17
Identities = 66/252 (26%), Positives = 129/252 (51%), Gaps = 21/252 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL- 59
M PL+ ++NL F ++ V + +SF +++GEIL L+G +GCGK+ +AI
Sbjct: 1 MINNPLLTVKNLN-KFFNEQQV---LHDISFSLQRGEILFLLGSSGCGKTTLLRAIAGFE 56
Query: 60 LPRNAIV--KGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
P N + K ++I+ G N LP ++ + ++F N + + + G+
Sbjct: 57 QPSNGEIWLKERLIF-GENF-NLPTQQRHLGYVVQEGVLFPHLNVYRNIAYGLGNGKGKN 114
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ + +++I++L + ++ D +P +LSGG +QRV +A L+ P L+
Sbjct: 115 SEEK------TRIEQIMQLTGIFELAD------RFPHQLSGGQQQRVALARALAPNPELI 162
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
+ DEP +ALD ++ QI ML+ + S + +TH+ AD++ ++ G++++I
Sbjct: 163 LLDEPFSALDEHLRQQIRQEMLQALRQSGASAIFVTHDRDESLRYADKIAIIQQGKILQI 222
Query: 238 APVEEIFDNPLH 249
++ +P H
Sbjct: 223 DTPRTLYWSPNH 234
>sp|P72297|OCCP_RHIME OCTOPINE PERMEASE ATP-BINDING PROTEIN P >gi|1519474|gb|AAB07520.1|
(U66830) OccP [Sinorhizobium meliloti]
Length = 262
Score = 88.5 bits (216), Expect = 9e-17
Identities = 67/266 (25%), Positives = 125/266 (46%), Gaps = 44/266 (16%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
S P VK+ + +F G+++ + GVS +GE+++++G +G GKS + +
Sbjct: 4 SVRPAVKLTGIRKNF----GLLEVLHGVSLTANQGEVISILGSSGSGKSTLLRCV----- 54
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSL----NPVFTIEDQMGEM 117
N+LE+P I G+EIA+ + S V + ++ +
Sbjct: 55 --------------NMLEVPNSGSVSIMGEEIALNHRSGHPSRPKYPKQVNRLRERAAMV 100
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEK----------------RVKSYPFELSGGMR 161
F+ L +IL +++ V+ D ++ + ++P ELSGG +
Sbjct: 101 FQSFHLWSHLTILQNVMEAPLHVQRRDRKECHAEAEALLERVGIASKRNAFPSELSGGQQ 160
Query: 162 QRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAE 221
QR IA L+ +P +L+ DEPT+ALD + +++ +M L + T +L++TH +
Sbjct: 161 QRAAIARALAMRPEVLLFDEPTSALDPELVGEVLRVMRNLAAEGRT-MLIVTHEMDFARD 219
Query: 222 MADRVVVMYAGQVVEIAPVEEIFDNP 247
++ R V ++ G + E E+F NP
Sbjct: 220 VSSRSVFLHQGVIAEEGLSSEMFANP 245
>pir||T03558 ribose transport ATP-binding protein - Rhodobacter capsulatus
>gi|3128359|gb|AAC16211.1| (AF010496) ribose transport
ATP-binding protein [Rhodobacter capsulatus]
Length = 305
Score = 87.8 bits (214), Expect = 2e-16
Identities = 77/247 (31%), Positives = 126/247 (50%), Gaps = 33/247 (13%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MS EP++ L + G V A+D FD+ GEILA+IG+ G GKS KA+ +
Sbjct: 1 MSPEPILSARGL----VKRYGKVTALDHADFDLMPGEILAVIGDNGAGKSTLIKALCGAV 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKE--IAMIFQDPLTSLNPVFTIEDQMGEMF 118
+A G+I G P R ++ +E IA ++Q +L+P +I D M
Sbjct: 57 QPDA---GEIRLDG-----APVRFAAPMQAQEAGIATVYQS--LALSPALSIVDNMFMGR 106
Query: 119 KVHKLPVVGSI---LD---------EIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMI 166
++ K + GS+ LD E + L ++ I + ++ V++ LSGG RQ V +
Sbjct: 107 ELRKPGIAGSLFRALDHGRMRAFAREKLSELGLMTIQNIDQTVET----LSGGQRQGVAV 162
Query: 167 AMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRV 226
A + ++I DEPT AL V +++ L+L+++ + I+LI+HN V E+ADR+
Sbjct: 163 ARAAAFGSKVIILDEPTAALGVKESRRVLELILDVKAR-GIPIILISHNMPHVFEVADRI 221
Query: 227 VVMYAGQ 233
+ G+
Sbjct: 222 HIHRLGR 228
>pir||D75579 branched-chain amino acid ABC transporter, ATP-binding protein -
Deinococcus radiodurans (strain R1)
>gi|6460676|gb|AAF12381.1|AE001863_6 (AE001863)
branched-chain amino acid ABC transporter, ATP-binding
protein [Deinococcus radiodurans]
Length = 238
Score = 87.8 bits (214), Expect = 2e-16
Identities = 66/249 (26%), Positives = 123/249 (48%), Gaps = 22/249 (8%)
Query: 1 MSGEP--LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMR 58
M+G P L+++++L++ + G V+A+ GV+ + G+I+++IG G GKS A++
Sbjct: 1 MTGHPGALLQVDDLHVAY----GRVEAVTGVNLSVEAGQIVSVIGANGAGKSTLLAALIG 56
Query: 59 LLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMF 118
LP +++ Y GR++ ++P E R G + ++ S+ T+ED +
Sbjct: 57 ALPSRGVIR----YAGRDVRQMP-LEDRVAAGMTLVPERRELFGSM----TVEDNLQLGA 107
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ + + D + ++++ R K LSGG +Q + I L A+P LL+
Sbjct: 108 YTQRAGMQSGLADVFRRFPRLLE------RRKQLAGTLSGGEQQMLAIGRALMARPKLLL 161
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEP+ L I I++++ ELR+ T +LL+ N ++D V+ G V
Sbjct: 162 LDEPSLGLAPLIVRDILHIVAELRDSGVT-VLLVEQNARAALAISDYGYVLEGGHVKLEG 220
Query: 239 PVEEIFDNP 247
P + D+P
Sbjct: 221 PAARLADDP 229
>emb|CAA88424.1| (Z48540) ABC-type transporter, putative ATP-binding component
[Pseudomonas aeruginosa]
Length = 278
Score = 87.0 bits (212), Expect = 3e-16
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+G PLV + F D ++AI +I +GE +A++G +GCGKS + ++ L
Sbjct: 9 TGTPLVSFRQVRKHFAVDGRRLEAIQQFDLEIGEGEFIAIVGASGCGKSTLLRLLIGL-- 66
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ G+I GR + + G E ++FQ+ L P T++ +
Sbjct: 67 -DRDYDGEIRVDGRPIACM---------GGERGIVFQEH--RLFPWLTVQQNVA------ 108
Query: 122 KLPVVGSILDEIVKLLKM---VKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
L +V L E K ++ +++ ++YP +LSGGM QRV IA L A P LL+
Sbjct: 109 -LGLVNEALGETDKAARIDEYIRLVGLHGFERAYPHQLSGGMAQRVAIARGLVASPRLLL 167
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVM 229
DEP +ALD + Q + + LL+TH+ +ADRVVVM
Sbjct: 168 LDEPFSALDALTRQQCRKSCCD-PPAHRITTLLVTHDVEEALYLADRVVVM 217
>sp|P31219|YBBA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBBA
>gi|7445737|pir||F64780 probable ABC-type transport
protein ybbA - Escherichia coli
>gi|1773177|gb|AAB40249.1| (U82664) hypothetical abc
transporter [Escherichia coli]
>gi|1786703|gb|AAC73597.1| (AE000155) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 228
Score = 86.6 bits (211), Expect = 4e-16
Identities = 66/240 (27%), Positives = 120/240 (49%), Gaps = 14/240 (5%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M E +V++ +L + + GV +++GE +AL+GE+G GKS T AI+ L
Sbjct: 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGESGSGKS-TLLAILAGL 59
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQD--PLTSLNPVFTIEDQMGEMF 118
+ G++ G+ L + E K+R K + +FQ + +LN + +E + +
Sbjct: 60 DDGS--SGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE--LPALL 115
Query: 119 KVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ + +++ L + KR+ P +LSGG +QRV +A + +P +L
Sbjct: 116 RGESSAESRNGAKALLEQLGL------GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLF 169
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEPT LD +I +L+ L + T+++++TH+ + A DR + + GQ+ E A
Sbjct: 170 ADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAAR-CDRCLRLVNGQLQEEA 228
>pir||B82068 ABC transporter, ATP-binding protein VC2520 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657103|gb|AAF95662.1| (AE004321) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 267
Score = 86.6 bits (211), Expect = 4e-16
Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 25/253 (9%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIM-RL 59
MS LV I+NL F + V+ D + + KG++ A++G +G GK+ + I +L
Sbjct: 1 MSQSDLVTIKNLR--FSRSQRVI--FDDIDLHVPKGKVTAIMGPSGIGKTTLLRLIGGQL 56
Query: 60 LPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDP--LTSLNPVFTIEDQMGEM 117
LP +G+I + G N+ L R++ + R K+++M+FQ T LN + D +
Sbjct: 57 LPE----QGEIWFDGENIPTLSRRKLYRAR-KKMSMLFQSGALFTDLN----VFDNVAYP 107
Query: 118 FKVHKLPVVGSILDE-IVKLLKMVKIPDPEKRVKSY--PFELSGGMRQRVMIAMMLSAKP 174
+ H + LDE ++K L ++K+ R +Y P ELSGGM +R +A ++ P
Sbjct: 108 LREH------TELDEAMIKTLVLLKLEAVGLRGAAYLMPSELSGGMARRAALARAIALDP 161
Query: 175 SLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
L++ DEP D ++ L+ L + ++++H+ V +AD V ++ G+V
Sbjct: 162 ELIMYDEPFVGQDPITMGVLVELIRNLNRALGVTSVVVSHDVPEVMSIADWVYLLADGKV 221
Query: 235 VEIAPVEEIFDNP 247
+ + + DNP
Sbjct: 222 IAQGSPQALRDNP 234
>dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacillus halodurans]
Length = 247
Score = 86.2 bits (210), Expect = 5e-16
Identities = 69/247 (27%), Positives = 128/247 (50%), Gaps = 13/247 (5%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
GE ++++E L + G V I ++ IR+GE++++IG +G GKS ++I RL+
Sbjct: 2 GEMILRVEGL--KKVYPDGTV-GIKEINTSIRRGELISVIGPSGAGKSTFLRSINRLVEP 58
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQD-PLTSLNPVF--TIEDQMGEMFK 119
+ G I +G N+ +++R++R K I M+FQ L + V + ++G M
Sbjct: 59 TS---GAIFVEGENICNARGKKLRQMRRK-IGMVFQHYNLIKRSSVLQNVLHGRLGYMST 114
Query: 120 VHKLPVVGSILDEIVK-LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ +G + K L ++K E++ ELSGG +QRV IA ++ P+L++
Sbjct: 115 IKG--GLGRFHESDTKRALSILKRVGLEEQALKRADELSGGQQQRVGIARAIAQNPTLIL 172
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
ADEP +LD T +++ M + ++ + ++ H + ADR++ + AG++V
Sbjct: 173 ADEPIASLDPTASENVLHYMKTICQEEGITTVVNLHQVEFAKKFADRMIGIKAGKIVFDG 232
Query: 239 PVEEIFD 245
E+ D
Sbjct: 233 TPRELTD 239
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 85.8 bits (209), Expect = 6e-16
Identities = 45/138 (32%), Positives = 75/138 (53%), Gaps = 6/138 (4%)
Query: 186 LDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFD 245
+D +++ I+NL +LR++ S++ ITH+ ++DR+ +M+ G +VE+ VE +
Sbjct: 2 VDASLRMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVLT 61
Query: 246 NPLHPYTQGLLRALPR---GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
+P HPYT+ L ++P K + E+ L KGC+F RC + +C +E
Sbjct: 62 DPKHPYTRLLRESIPEPDPEKKWKEEITIADTEYEEYLR--KGCKFAGRCPEVMSICREE 119
Query: 303 KPKLIEVEKEHYVACHLY 320
KP I V + V CHLY
Sbjct: 120 KPPEIMV-GDSMVRCHLY 136
>pir||G82993 probable ATP-binding/permease fusion ABC transporter PA5231
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9951539|gb|AAG08616.1|AE004935_13 (AE004935)
probable ATP-binding/permease fusion ABC transporter
[Pseudomonas aeruginosa]
Length = 916
Score = 85.4 bits (208), Expect = 8e-16
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 19/242 (7%)
Query: 3 GEPLVKIENLYIDFITDR-GVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
G P + IE + +T R G A+D VSF I +GEI +G GCGKS T K + LLP
Sbjct: 269 GAPRIAIE---AEGLTCRFGDFVAVDHVSFRIERGEIFGFLGSNGCGKSTTMKMLTGLLP 325
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVH 121
+ +G G+ + R++ + SL ++ + ++
Sbjct: 326 AS---EGTCALFGQPVDASDMATRRRVG-------YMSQAFSLYAELSVRQNLVLHARLF 375
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
LP G ++ +M++ D EK P +L G+RQR+ +A+ + KP +LI DE
Sbjct: 376 HLPADGI----PARVGEMLRRFDLEKVADELPNDLPLGIRQRLSLAVAVIHKPEILILDE 431
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVE 241
PT+ +D + LM+EL + +I + TH A+ DR+ +M+AG+V+ +
Sbjct: 432 PTSGVDPVARDGFWELMVELSRRDGVTIFISTHFMN-EAQRCDRISLMHAGKVLASDTPD 490
Query: 242 EI 243
E+
Sbjct: 491 EL 492
>pir||G72418 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980593|gb|AAD35197.1|AE001696_11
(AE001696) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 507
Score = 84.7 bits (206), Expect = 1e-15
Identities = 67/249 (26%), Positives = 124/249 (48%), Gaps = 22/249 (8%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+GE L+KIE+L++ D + A+ GVSF++++GEI+ + G G G+S +AI L
Sbjct: 252 AGETLLKIEDLWVK---DNRKLDAVKGVSFEVKRGEIVGIAGVAGNGQSELVEAITGL-- 306
Query: 62 RNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIE--DQMGEMFK 119
+G++ +KG ++ + +R + +F P L ++ +
Sbjct: 307 -RGAERGRVYFKGEDITGYDPKRLRDLG------MFHVPEDRLKRGLIVDFPAYFNTILG 359
Query: 120 VHKL-PVVGS---ILDEIVKLLKMV--KIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAK 173
H + P V S + EI + K + K + ++ SGG +Q++++A +S
Sbjct: 360 RHMIEPFVKSGFLNMKEIKRFSKQLFEKFDIRPRNIELLAGSFSGGNQQKIIVAREMSFS 419
Query: 174 PSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
P LL+ +PT LDV I ++ +R+ +LLI+ + ++DR++VMY GQ
Sbjct: 420 PELLVVAQPTRGLDVGAIEFIHKTLVSMRDA-GVGVLLISMELDEIFSLSDRILVMYEGQ 478
Query: 234 VV-EIAPVE 241
++ E+ P E
Sbjct: 479 IMGEVKPEE 487
>pir||D75444 branched-chain amino acid ABC transporter, ATP-binding protein -
Deinococcus radiodurans (strain R1)
>gi|6458766|gb|AAF10610.1|AE001955_2 (AE001955)
branched-chain amino acid ABC transporter, ATP-binding
protein [Deinococcus radiodurans]
Length = 252
Score = 84.3 bits (205), Expect = 2e-15
Identities = 57/233 (24%), Positives = 117/233 (49%), Gaps = 18/233 (7%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
G P+++++N++ + G ++A+ G++ + +GEI+ALIG G GK+ T + I ++
Sbjct: 14 GTPVLELQNVHSYY----GQIEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKP 69
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGE-MFKVH 121
G + Y G+N+ +P ++ G+ +A + + + P T+ + + + V+
Sbjct: 70 KT---GSVTYLGQNVTGVPSHQLI---GRGMAHVPEG--RRIFPQMTVRENLEVGAYTVN 121
Query: 122 KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADE 181
+ + ++E +L P +R +SGG +Q + IA L P +L+ DE
Sbjct: 122 DKAAINARIEEGFELF-----PRLRERESQLGGTMSGGEQQMLAIARALMIAPKVLLLDE 176
Query: 182 PTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
P+ L I +++ L ++ T+ILL+ N + +ADR V+ G++
Sbjct: 177 PSMGLSPLFVENIFSIIERLNKERGTTILLVEQNASMALAIADRAYVLQTGEI 229
>emb|CAC11868.1| (AL445065) ATP-binding protein related resistance protein
[Thermoplasma acidophilum]
Length = 319
Score = 83.9 bits (204), Expect = 2e-15
Identities = 71/247 (28%), Positives = 120/247 (47%), Gaps = 25/247 (10%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M L+++ NL + GV A S IR G I AL+G G GKS T K I LL
Sbjct: 1 MENGNLLEVRNLSKIYPGGSGVRNA----SIKIRYGSIHALLGNNGAGKSTTMKCITGLL 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIED---QMGEM 117
++I +I ++G ++++K G + L + VFT+ D G M
Sbjct: 57 EPDSI---EISFRGTTY-PWNSKDLKKHIG------YVPELPAFPKVFTVHDCIVSYGRM 106
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
+ K VG + + +V I E+ +K LS GM Q++ I + L + P ++
Sbjct: 107 MGLGKAEAVG-------RAMPIVSILGLEEHMKKRVSSLSRGMLQKLDIVIALLSDPDVI 159
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
I DEPT LDV+ ++ ++ LR++ + SIL+ +H + ++D V VM +G V+
Sbjct: 160 IMDEPTAGLDVSAVEELFGIIRSLRDRGK-SILISSHQLRDIETISDSVTVMDSGHVIFD 218
Query: 238 APVEEIF 244
+++++
Sbjct: 219 GSIKDLY 225
>emb|CAC14305.1| (AJ276209) putative ATP-binding protein of an ABC-transporter
[Clostridium sticklandii]
Length = 513
Score = 83.9 bits (204), Expect = 2e-15
Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
G+ ++KIE+L +RG+ A++G+ ++R+GEIL + G G G+S + I L
Sbjct: 264 GDTVLKIEDLKAK--DNRGLF-ALNGLDLEVRRGEILGIAGVDGNGQSELVEVITGLKKA 320
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLT-SLNPVFTIEDQMG-EMFKV 120
+ G ++ G+ E+ R I I+ I +D L FT+ + M + +K
Sbjct: 321 ES---GSVMINGK---EIVNTNPRNIMDSGISNIPEDRQKHGLVLDFTVSENMILQNYKK 374
Query: 121 HKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFE---LSGGMRQRVMIAMMLSAKPSLL 177
+ G +LD +K I + R ++ + LSGG +Q+V+IA ++ P LL
Sbjct: 375 ERFSKNGKLLDSNIKQFADELINKFDVRPQNNALKARALSGGNQQKVIIAREVTNDPDLL 434
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
IA +PT LDV + ++E R+K + +LL++ + ++DR+ V+Y G++V I
Sbjct: 435 IATQPTRGLDVGAIEFVHKSLIEQRDKGK-GVLLVSFELDEIMSVSDRIAVIYEGKIVGI 493
Query: 238 APVEEIFDNPL 248
++ +N L
Sbjct: 494 VDAKDANENQL 504
>pir||T19982 hypothetical protein C47A10.1 - Caenorhabditis elegans
>gi|3875004|emb|CAB03973.1| (Z81484) contains similarity
to Pfam domain: PF00005 (ABC transporter), Score=450.7,
E-value=4.2e-132, N=2; PF00664 (ABC transporter
transmembrane region.), Score=399.8, E-value=8.4e-117,
N=2~cDNA EST yk303b9.3 comes from this gene~cDNA EST
yk303b9.5 c> >gi|3879215|emb|CAB07855.1| (Z93782)
contains similarity to Pfam domain: PF00005 (ABC
transporter), Score=450.7, E-value=4.2e-132, N=2; PF00664
(ABC transporter transmembrane region.), Score=399.8,
E-value=8.4e-117, N=2~cDNA EST yk303b9.3 comes from this
gene~cDNA EST yk303b9.5 c>
Length = 1294
Score = 83.5 bits (203), Expect = 3e-15
Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 21/240 (8%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+SGE VK+ ++ + +R V + G++ ++ G+ LAL+G +GCGKS + RL
Sbjct: 1026 LSGE--VKLNKVFFRY-PERPAVPILQGLNVHVKPGQTLALVGPSGCGKSTVISLLERLY 1082
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPL---TSLNPVFTIEDQMGEM 117
++G + +L ++ + +RK IA++ Q+P+ TS+ Q GE
Sbjct: 1083 DP---LEGAVTVDNNDLRQMNPKHLRK----HIALVSQEPILFDTSIRENIVYGLQPGEY 1135
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDP-EKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
H+ I K + ++PD E RV +LSGG +QR+ IA L P +
Sbjct: 1136 --THEQIETACSKANIHKFID--ELPDGYETRVGEKGTQLSGGQKQRIAIARALIRNPKI 1191
Query: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
L+ DE T+ALD + Q+ + L+ K T I ++ H + A ++V+ GQVVE
Sbjct: 1192 LLLDEATSALDTESEKQV-QVALDAAAKDRTCI-VVAHRLSTIVN-AGCIMVVKNGQVVE 1248
Score = 78.0 bits (189), Expect = 1e-13
Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 36/238 (15%)
Query: 20 RGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLE 79
R VK + GVS D + G+ +AL+G +GCGKS + + R +A G+I+ + +
Sbjct: 395 RADVKILKGVSLDAQPGQTVALVGSSGCGKSTIIQLLQRFYNPDA---GQILIDDIPIED 451
Query: 80 LPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDE-IVKLLK 138
+ +R++ + ++ Q+P N + G + DE I + LK
Sbjct: 452 FNIKYLRQL----VGVVSQEP-NLFNTSIEQNIRYGR----------SDVSDEDIARALK 496
Query: 139 MVKIPDPEKRVKSYP-----------FELSGGMRQRVMIAMMLSAKPSLLIADEPTTALD 187
D +K++P ++SGG +QR+ IA L P +L+ DE T+ALD
Sbjct: 497 EANAAD---FIKTFPEGLNTLVGDRGVQMSGGQKQRIAIARALVRNPKILLLDEATSALD 553
Query: 188 VTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFD 245
++ I+ LE + T+I +I H V AD+++VM AGQV+E+ E + +
Sbjct: 554 AESES-IVQSALENASRGRTTI-VIAHRLSTVRN-ADKIIVMKAGQVMEVGTHETLIE 608
>pir||D72492 probable ABC transporter ATP-binding protein APE2579 - Aeropyrum
pernix (strain K1) >gi|5106285|dbj|BAA81596.1|
(AP000064) 333aa long hypothetical ABC transporter
ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 83.5 bits (203), Expect = 3e-15
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 23/245 (9%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+ E +V E L + D G +A+DGVSF I +GE+ +L+G G GK+ T K + LL
Sbjct: 4 LESEAMVVAEEL----VKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLL 59
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ G+ G +++ P R I + D ++ + V+ ++
Sbjct: 60 RPTS---GEAWIAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYI-------QARL 109
Query: 121 HKLP--VVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ LP E++ L +++ +RV +Y SGGMR+++ IAM L P +L
Sbjct: 110 YGLPSSEARERTREVLDYLDLMEA--AHRRVATY----SGGMRRKLEIAMSLVHSPKVLF 163
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT LDV + + + +L+ T ILL TH ++DRV ++ G++V
Sbjct: 164 LDEPTLGLDVHSRRSLWRYIEDLKRSAVT-ILLTTHYMEEAEMLSDRVAIIDRGRIVAEG 222
Query: 239 PVEEI 243
EE+
Sbjct: 223 TPEEL 227
>gb|AAG28500.1|AF196574_3 (AF196574) FrcA [Sinorhizobium meliloti]
Length = 260
Score = 82.7 bits (201), Expect = 5e-15
Identities = 71/245 (28%), Positives = 122/245 (48%), Gaps = 29/245 (11%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+ EP++ L + G V A+D FD+ GEILA+IG+ G GKS KAI +
Sbjct: 1 MAQEPILTARGL----VKRYGRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAV 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ +G+I +G+ + R + R I ++Q+ +L+P +I D M ++
Sbjct: 57 TPD---EGEIRLEGK---PIQFRSPMEARQAGIETVYQN--LALSPALSIADNMFLGREI 108
Query: 121 HKLPVVGSILDEIVKL------------LKMVKIPDPEKRVKSYPFELSGGMRQRVMIAM 168
K ++G + + L ++ I + + V++ LSGG RQ V +A
Sbjct: 109 RKPGIMGKWFRSLDRAAMEKQARAKLSELGLMTIQNINQAVET----LSGGQRQGVAVAR 164
Query: 169 MLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVV 228
+ ++I DEPT AL V +++ L+L++R + I+LI+HN V E+ADR+ +
Sbjct: 165 AAAFGSKVVIMDEPTAALGVKESRRVLELILDVRRR-GLPIVLISHNMPHVFEVADRIHI 223
Query: 229 MYAGQ 233
G+
Sbjct: 224 HRLGR 228
>emb|CAB75552.1| (AJ272047) ATPase [Rhizobium leguminosarum bv. viciae]
Length = 247
Score = 82.3 bits (200), Expect = 7e-15
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M+G+PL+++ ++ T G ++A+ GV + KGEI++LIG G KS +M +
Sbjct: 6 MTGQPLLQVNSVE----TYYGNIRALAGVDVHVNKGEIVSLIGANGAAKSTL---MMTIC 58
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPL-TSLNPVFTIEDQMGEMFK 119
G ++++GR++ +P E+ ++R I Q P + P T+ + +
Sbjct: 59 GSPQARTGSVVFEGRDITRMPTHEIARLR------IAQSPEGRRIFPRMTVLENLQMGAG 112
Query: 120 VHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
+ L +++I L +K +R LSGG +Q + I L +P LL+
Sbjct: 113 LDNLKHFAEDVEKIFTLFPRLK-----ERHAQRGGTLSGGEQQMLSIGRALMVRPKLLLL 167
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAP 239
DEP+ L I I + +L E ++ L+ N ++ R VM G+V
Sbjct: 168 DEPSLGLAPLIVKGIFEAIKKLNEAEGLTVFLVEQNAFAALRLSHRAYVMVNGKVTMSGS 227
Query: 240 VEEIFDNP 247
+E+ NP
Sbjct: 228 GKELLANP 235
>pir||E75579 branched-chain amino acid ABC tranpsorter, ATP binding protein -
Deinococcus radiodurans (strain R1)
>gi|6460675|gb|AAF12380.1|AE001863_5 (AE001863)
branched-chain amino acid ABC tranpsorter, ATP binding
protein [Deinococcus radiodurans]
Length = 587
Score = 80.8 bits (196), Expect = 2e-14
Identities = 70/254 (27%), Positives = 120/254 (46%), Gaps = 22/254 (8%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
G P++K+ N F G +KA++ VSFD+ GEI+ LIG G GKS + +
Sbjct: 336 GSPILKVRNAVKQF----GGLKAVNDVSFDVNAGEIVGLIGPNGAGKSTMFNLVTGV--- 388
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFT-IEDQMGEMFKVH 121
N G + G + LP R + ++ +A FQ L P + +E+ M +
Sbjct: 389 NPATSGTVEVLGHDAGRLPARAIHRL---GVARTFQH--VKLFPELSLLENTMMGGYARG 443
Query: 122 KLPVVGSIL----DEIVKLLKMVKIPDPEKRVKSYPFELSG----GMRQRVMIAMMLSAK 173
+ ++ S+L E L + + +E +G G ++ + IA L A
Sbjct: 444 QAGLLRSMLHLERGEEAALQGLALTQLERVGLSEQAYEQAGNLALGQQRLLEIARALVAD 503
Query: 174 PSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQ 233
PS L+ DEP L + ++ L+ +LR++ T IL++ H+ +V + DR+VVM +GQ
Sbjct: 504 PSFLLLDEPAAGLRFGEKQELATLLRKLRDEGVT-ILIVEHDMDLVMNLVDRLVVMNSGQ 562
Query: 234 VVEIAPVEEIFDNP 247
+ +++ NP
Sbjct: 563 ELAQGSPQQVRSNP 576
>pir||T47062 hypothetical protein [imported] - Yersinia pestis
>gi|4106650|emb|CAA21405.1| (AL031866) ORF80, len=296
aa, 59.6% identity in 265 aa overlap with MalK E. coli
(371 aa), Fasta scores: opt: 1024, E(): 0 [Yersinia
pestis]
Length = 296
Score = 80.4 bits (195), Expect = 3e-14
Identities = 68/264 (25%), Positives = 123/264 (45%), Gaps = 31/264 (11%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
MSG +++ N++ F D V+ +D +I+ GE IG +GCGKS + I L
Sbjct: 1 MSG---IRLSNVFKRF-HDTQVINQVD---LEIKNGEFCVFIGPSGCGKSTLLRMIAGL- 52
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
I G+I + + +L + + +AM+FQ +L P TI D M K+
Sbjct: 53 --ETISSGEISIGDKVVNKLAPAD------RGVAMVFQS--YALYPHMTIYDNMAFNLKL 102
Query: 121 HKLPVVGSILDEIVK-LLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIA 179
K EI + +L KI E ++ P LSGG RQRV I + P + +
Sbjct: 103 AKTEPA-----EIERRVLNAAKILQLELLLQRLPKALSGGQRQRVAIGRAIVRNPDVFLF 157
Query: 180 DEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYA-------G 232
DEP + LD +++ + +L + +++ +TH+ +AD++V++ + G
Sbjct: 158 DEPLSNLDASLRVATRVEIAKLHHQLGNTMVYVTHDQVEAMTLADKIVLLNSGAAMLNEG 217
Query: 233 QVVEIAPVEEIFDNPLHPYTQGLL 256
+ + E++ +P++ + G +
Sbjct: 218 SIAQTGHPLELYHHPVNEFVAGFI 241
>pir||G72598 probable ABC transporter ATP-binding protein APE1255 - Aeropyrum
pernix (strain K1) >gi|5104931|dbj|BAA80245.1|
(AP000061) 253aa long hypothetical ABC transporter
ATP-binding protein [Aeropyrum pernix]
Length = 253
Score = 80.0 bits (194), Expect = 4e-14
Identities = 64/247 (25%), Positives = 114/247 (45%), Gaps = 46/247 (18%)
Query: 2 SGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLP 61
+G+P V+ E ++ + R V+K VS + +G + ++G G GK+ + ++ L
Sbjct: 8 AGQPAVEAEGVW-KRLGGRWVLK---DVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYR 63
Query: 62 RNAIVKGKIIYKG-----------RNLLELPE--REMRKIRGKEIAMIFQDPLTSLNPVF 108
+ +G++ G R + LPE R + G E ++ ++
Sbjct: 64 AD---RGRVALLGEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYAS-------IY 113
Query: 109 TIEDQMGEMFKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAM 168
+ED G + + +L +G L E RV+SY S GMR+R+++A
Sbjct: 114 GVEDLEGYLEEASRLSGLGGRLGE---------------RVRSY----SKGMRRRLLVAA 154
Query: 169 MLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVV 228
ML+ KPSL + DEPT LD I L+ E E+ ++LL +HN V + + +
Sbjct: 155 MLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITM 214
Query: 229 MYAGQVV 235
+ +G++V
Sbjct: 215 ISSGRIV 221
>pir||D83356 probable ATP-binding component of ABC transporter PA2308 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948341|gb|AAG05696.1|AE004657_3 (AE004657) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 282
Score = 80.0 bits (194), Expect = 4e-14
Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
+ + L+ ++ + +++ T VV+A VSF++ + L+G +GCGKS KA+ +
Sbjct: 11 LPADALLAVDGVSLEYRTRSRVVRATQRVSFEVDPADRFVLLGPSGCGKSTLLKAVAGFI 70
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
+ +G+I +G+ + + G + ++FQ+ L P T+ + +
Sbjct: 71 TPS---EGEIRLQGQAV---------RAPGPDRIVVFQE-FDQLPPWKTVRQNV-----L 112
Query: 121 HKLPVVGSIL--------DEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSA 172
L V G + DE ++ + + + +YP LSGGM+ RV IA L+
Sbjct: 113 FPLRVSGQVTRDEAERRADECLEKVGLAGFAE------AYPHTLSGGMKARVAIARALAM 166
Query: 173 KPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVM 229
+P +L+ DEP ALD + ++ +L L E+ ++L +TH+ + +R++++
Sbjct: 167 QPKILLMDEPFAALDALTRRKMQEELLRLWEEVRFTLLFVTHSIEEALVVGNRILLL 223
>dbj|BAB04773.1| (AP001510) transposase (08)/ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 901
Score = 80.0 bits (194), Expect = 4e-14
Identities = 69/246 (28%), Positives = 123/246 (49%), Gaps = 28/246 (11%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
GE ++++ +L + +R VVK G++ I KGE++ L+G G GKS T I L+
Sbjct: 589 GENMIEVIDLSKTY-RNRQVVK---GINMFIEKGEMVGLLGPNGAGKSTTISMISSLIQP 644
Query: 63 NAIVKGKIIYKGRNLLELPEREMRKIRG---KEIAMIFQDPLTSLNPVF--TIEDQMGEM 117
+ G ++ KG ++ + + +R I G +EIA ++ D N F I GE
Sbjct: 645 TS---GDVLIKGGSIHK-QSKAIRSILGVVPQEIA-VYHDLTARENLAFFGKIYGLKGEE 699
Query: 118 FKVHKLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLL 177
K H++ L++V + E+R SGGM++R+ IA+ L +P L+
Sbjct: 700 LK-HRME----------STLQLVGL---EERQNDRVHTFSGGMKRRLNIAVALLHEPELI 745
Query: 178 IADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEI 237
I DEPT +D ++ I+ + L ++ E +++ +H V + DR+ +M G+V+
Sbjct: 746 IMDEPTVGIDPQSRSHILETVKTLNQEREMTVIYTSHYMEEVEYLCDRLYIMDRGEVIAS 805
Query: 238 APVEEI 243
+E+
Sbjct: 806 GTKDEV 811
>dbj|BAB10822.1| (AB019223) multidrug resistance p-glycoprotein [Arabidopsis
thaliana]
Length = 1248
Score = 80.0 bits (194), Expect = 4e-14
Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 33/285 (11%)
Query: 1 MSGEPL------VKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAK 54
MSGE L +++ ++Y + R V+ G S + G +AL+G++G GKS
Sbjct: 345 MSGEVLEEIKGDIELRDVYFRYPA-RPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVIS 403
Query: 55 AIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPL---TSL--NPVFT 109
I R + G+++ G ++L + +++ IR K I ++ Q+P+ T++ N V+
Sbjct: 404 LIERFYDPES---GEVLIDG---IDLKKFQVKWIRSK-IGLVSQEPILFATTIRENIVYG 456
Query: 110 IEDQMGEMFKVH-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAM 168
+D + + KL + +D++ + L E V + +LSGG +QR+ IA
Sbjct: 457 KKDASDQEIRTALKLANASNFIDKLPQGL--------ETMVGEHGTQLSGGQKQRIAIAR 508
Query: 169 MLSAKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVV 228
+ P +L+ DE T+ALD + + + +++L + +++ H + AD + V
Sbjct: 509 AILKNPKILLLDEATSALDAESERIVQDALVKL--MLSRTTVVVAHRLTTI-RTADMIAV 565
Query: 229 MYAGQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIP 273
+ G+V+E +E+ +P Y+Q L L G K E ++ P
Sbjct: 566 VQQGKVIEKGTHDEMIKDPEGTYSQ--LVRLQEGSKKEEAIDKEP 608
>gb|AAD37495.1|AF109162_3 (AF109162) HmuV [Corynebacterium diphtheriae]
Length = 277
Score = 79.6 bits (193), Expect = 5e-14
Identities = 68/282 (24%), Positives = 132/282 (46%), Gaps = 31/282 (10%)
Query: 1 MSGEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLL 60
M E LV++ +L + G + + ++FD GE+ LIG G GKS A+ L
Sbjct: 1 MQPEALVRVRDLSVSV----GQKRLLCDINFDAYAGEVTGLIGPNGAGKSTLLAALSGDL 56
Query: 61 PRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKV 120
R + G I G + ++ RE+ ++R +++ QD S+ F + D + +
Sbjct: 57 ERQS---GSIDICGLDPVDSSARELARVR----SVMLQD--VSVTFQFLVRDVVA----M 103
Query: 121 HKLPVVGSILDEIVKLL--KMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLI 178
+ P G+ E L + D LSGG R RV ++ +L+ + +++
Sbjct: 104 GRRPWEGTDRQEFDDRLIDAALSATDAAHLAGRDIVTLSGGERARVALSRVLAQQTPVVM 163
Query: 179 ADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIA 238
DEPT ALD++ Q Q++ LM + + +++++ H+ A D +V + G++V
Sbjct: 164 LDEPTAALDISHQEQVLGLMQSIARRTGIAVIVVLHDLNAAAAYCDHIVCLADGRIVADG 223
Query: 239 PVEEIFDN---------PLH-PYTQGLLRALP--RGHKTERE 268
V +++ + P+H ++G++ ++ RG T+ +
Sbjct: 224 SVADVYTDETLSSVYGWPIHVDVSEGIVNSVQPLRGRTTQNQ 265
>gi|11498492 ribose ABC transporter, ATP-binding protein (rbsA-1) [Archaeoglobus
fulgidus] >gi|7430344|pir||G69360 probable ribose ABC
transporter rbsA-1 - Archaeoglobus fulgidus
>gi|2649712|gb|AAB90351.1| (AE001042) ribose ABC
transporter, ATP-binding protein (rbsA-1) [Archaeoglobus
fulgidus]
Length = 495
Score = 78.8 bits (191), Expect = 8e-14
Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 23/239 (9%)
Query: 3 GEPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR 62
G ++++E+L++ +RG A+ GVSF IR+GEI + G +G G+ +AI L
Sbjct: 247 GREVLRVEDLWVR--DERGNY-AVKGVSFSIREGEIFGIAGVSGNGQKELEEAIAGL--- 300
Query: 63 NAIVKGKIIYKGRNLLE--LPEREMRKIRGKEIAMIFQDPL-TSLNPVFTI-EDQMGEMF 118
+ +G+II G+++ + ERE +IA I +D + L P ++ E+ M + F
Sbjct: 301 RKVERGRIILDGKDITAKGVAERE-------DIAYIPEDRIGVGLAPSLSVLENLMLKDF 353
Query: 119 KVHKLPVVGSILDEIVKLLKMVK---IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPS 175
K +K + + + + +V+ + P + S LSGG QR+++A LS P
Sbjct: 354 KKYKKRFSLNFEEMEKRAMSLVEEFSVKTPS--LHSPAGTLSGGNIQRLILARELSRNPR 411
Query: 176 LLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQV 234
L+IA +PT LDV + ++E + +++LLI+ + + +++DR+ VMY G++
Sbjct: 412 LIIASQPTRGLDVAGIDYVRRRLIEAAMR-GSAVLLISEDLDEIFQLSDRIGVMYEGEI 469
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117519123
Number of Sequences: 2977
Number of extensions: 4865079
Number of successful extensions: 21875
Number of sequences better than 1.0e-10: 1319
Number of HSP's better than 0.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 919
Number of HSP's that attempted gapping in prelim test: 19084
Number of HSP's gapped (non-prelim): 1597
length of query: 323
length of database: 189,106,746
effective HSP length: 55
effective length of query: 268
effective length of database: 156,189,961
effective search space: 41858909548
effective search space used: 41858909548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)