BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0095 (dppF-1) DE:dipeptide ABC transporter,
dipeptide-binding protein
(345 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 699 0.0
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 349 4e-95
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 345 4e-94
pir||A72618 probable oligopeptide transport ATP-binding protein ... 340 1e-92
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 328 6e-89
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 327 1e-88
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 327 1e-88
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 324 7e-88
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 321 1e-86
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 318 5e-86
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 318 7e-86
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 316 3e-85
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 313 2e-84
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 309 3e-83
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 307 2e-82
pir||F71211 probable oligopeptide transport ATP-binding protein ... 302 6e-81
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 301 9e-81
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 298 5e-80
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 298 5e-80
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 294 7e-79
pir||F71130 probable oligopeptide transport ATP-binding protein ... 293 2e-78
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 291 6e-78
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 291 6e-78
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 288 5e-77
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 286 3e-76
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 283 2e-75
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 283 2e-75
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 276 3e-73
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 275 5e-73
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 275 5e-73
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 272 6e-72
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 270 2e-71
pir||C72452 probable peptide transport ATP-binding protein APE22... 267 1e-70
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 266 2e-70
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 265 8e-70
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 263 2e-69
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 261 1e-68
pir||G71211 probable oligopeptide transport ATP-binding protein ... 260 2e-68
pir||F70141 probable oligopeptide transport ATP-binding protein ... 260 2e-68
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 259 3e-68
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 259 3e-68
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 259 3e-68
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 259 3e-68
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 259 4e-68
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 258 7e-68
pir||C72536 probable oligopeptide transport ATP-binding protein ... 253 3e-66
dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 250 2e-65
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 249 3e-65
pir||C72720 probable oligopeptide transport ATP-binding protein ... 247 1e-64
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 245 4e-64
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 242 4e-63
pir||E64820 probable oligopeptide transport protein - Escherichi... 242 4e-63
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 242 4e-63
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 242 5e-63
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 240 1e-62
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 238 5e-62
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 238 9e-62
sp|P77622|YDDO_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 237 1e-61
pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 ... 237 1e-61
pir||E72536 probable oligopeptide transport ATP-binding protein ... 236 2e-61
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 236 2e-61
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 233 2e-60
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 231 7e-60
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 230 2e-59
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 229 3e-59
emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter... 228 8e-59
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 228 1e-58
pir||S75333 oligopeptide transport protein oppF - Synechocystis ... 227 1e-58
pir||T03432 probable transport protein accC - Agrobacterium tume... 226 3e-58
pir||T35983 probable peptide transport ATP-binding protein - Str... 226 4e-58
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 224 1e-57
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 224 2e-57
pir||T45281 probable ABC transporter intracellular ATPase chain ... 222 4e-57
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 222 4e-57
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 220 1e-56
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 220 2e-56
gi|10954942 Probable accC [Agrobacterium tumefaciens] >gi|649829... 220 2e-56
pir||D83419 probable ATP-binding component of ABC transporter PA... 220 2e-56
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 219 3e-56
pir||F64557 dipeptide transport ATP-binding protein dppF - Helic... 219 3e-56
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 219 4e-56
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 219 4e-56
pir||A71952 dipeptide transport system ATP-binding protein - Hel... 219 4e-56
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 219 4e-56
pir||E71130 probable oligopeptide transport ATP-binding protein ... 219 5e-56
pir||F72617 probable dipeptide transport system ATP-binding prot... 217 2e-55
sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 216 3e-55
pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 ... 215 8e-55
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 215 8e-55
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 214 1e-54
pir||A72452 probable peptide transport ATP-binding protein APE22... 214 1e-54
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 214 1e-54
gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1] 214 1e-54
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 212 5e-54
gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T... 212 7e-54
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 212 7e-54
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 212 7e-54
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 211 9e-54
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 211 9e-54
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 211 9e-54
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 210 2e-53
pir||A72284 oligopeptide ABC transporter, ATP-binding protein - ... 210 2e-53
pir||F71163 probable oligopeptide transport ATP-binding protein ... 210 3e-53
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 210 3e-53
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 210 3e-53
pir||C82442 probable peptide ABC transporter, ATP-binding protei... 210 3e-53
sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 209 4e-53
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 209 4e-53
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 209 4e-53
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 208 8e-53
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 208 8e-53
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 208 8e-53
dbj|BAA15129.1| (D90788) Dipeptide transport ATP-binding protein... 207 1e-52
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 207 1e-52
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 206 3e-52
pir||D71163 probable oligopeptide transport ATP-binding protein ... 206 3e-52
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 206 3e-52
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 206 4e-52
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 206 4e-52
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 205 5e-52
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 205 9e-52
sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 204 1e-51
pir||A72282 oligopeptide ABC transporter, ATP-binding protein - ... 204 1e-51
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 204 1e-51
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 203 3e-51
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 202 6e-51
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 202 6e-51
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 201 8e-51
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 201 1e-50
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 200 2e-50
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 200 2e-50
gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . ... 198 7e-50
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 198 1e-49
pir||B83389 probable ATP-binding component of ABC transporter PA... 198 1e-49
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 197 1e-49
pir||T45280 probable ABC transporter intracellular ATPase chain ... 197 2e-49
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 197 2e-49
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 194 1e-48
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 194 2e-48
pir||H70788 probable peptidetransport system ABC-transporter ATP... 194 2e-48
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 193 2e-48
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 193 3e-48
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 192 4e-48
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 192 4e-48
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 192 4e-48
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 192 6e-48
pir||T35982 probable peptide transport ATP-binding protein - Str... 191 1e-47
pir||D72720 probable oligopeptide transport ATP-binding protein ... 191 1e-47
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 188 7e-47
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 187 2e-46
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 185 6e-46
pir||E71483 probable dipeptide transport - Chlamydia trachomatis... 184 1e-45
gb|AAD48154.1|AF086618_1 (AF086618) ABC transporter homolog [Loo... 183 2e-45
pir||B81746 peptide ABC transporter, ATP-binding protein TC0061 ... 183 3e-45
pir||E83082 probable ATP-binding component of ABC transporter PA... 182 4e-45
pir||T03431 probable transport protein accB - Agrobacterium tume... 181 1e-44
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 180 3e-44
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 178 6e-44
gi|10954941 Probable accB [Agrobacterium tumefaciens] >gi|649829... 176 2e-43
dbj|BAB05797.1| (AP001514) oligopeptide ABC transporter (ATP-bin... 175 5e-43
pir||H71951 dipeptide transport system dipeptide transport syste... 175 9e-43
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 174 2e-42
emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi] 173 2e-42
sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 167 2e-40
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 165 6e-40
pir||A82876 oligopeptide transport system permease protein UU560... 165 8e-40
sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 164 1e-39
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 163 3e-39
pir||E72428 oligopeptide ABC transporter, ATP-binding protein - ... 163 3e-39
gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 162 4e-39
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 162 7e-39
sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 161 1e-38
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 161 2e-38
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 159 3e-38
gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae] 159 6e-38
pir||B64551 oligopeptide ABC transporter, ATP-binding protein - ... 156 3e-37
gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport pro... 155 7e-37
pir||E71957 ABC transporter, ATP-binding protein - Helicobacter ... 155 9e-37
pir||F82170 peptide ABC transporter, ATP-binding protein VC1684 ... 155 9e-37
emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi] 154 2e-36
dbj|BAA97047.1| (AB015765) compensate SapD [Vibrio alginolyticus] 153 2e-36
emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding prot... 152 6e-36
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 151 1e-35
pir||E81968 probable ABC transport ATP-binding subunit NMA0504 [... 150 2e-35
pir||E81023 ABC transporter, ATP-binding protein NMB1948 [import... 150 2e-35
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 150 3e-35
gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [S... 149 4e-35
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 148 9e-35
emb|CAC00366.1| (AL160371) probable oligopeptide transport ATP-b... 147 2e-34
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 146 3e-34
sp|P45289|SAPF_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 138 1e-31
gb|AAK42960.1| ABC transporter, ATP binding protein (glucose) [S... 136 5e-31
sp|P75551|OPPF_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 135 6e-31
pir||T34822 ABC-transporter ATP binding protein - Streptomyces c... 131 1e-29
gi|11498586 osmoprotection protein (proV) [Archaeoglobus fulgidu... 131 2e-29
pir||F81348 ABC transport system ATP-binding protein Cj0774c [im... 127 2e-28
pir||A82429 iron(III) ABC transporter, ATP-binding protein VCA06... 127 2e-28
pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A... 126 3e-28
gi|7524830 sulfate transport system permease protein [Chlorella ... 126 3e-28
dbj|BAB07815.1| (AB036417) CysA protein [Acetabularia acetabulum] 125 6e-28
pir||E83012 probable ATP-binding component of ABC transporter PA... 125 9e-28
dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.] 124 1e-27
pir||D72257 hypothetical protein TM1403 - Thermotoga maritima (s... 124 2e-27
pir||S77386 nitrate transport protein D-3 - Synechocystis sp. (s... 123 3e-27
sp|P45769|YHDZ_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP... 121 1e-26
sp|Q57855|Y412_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 121 1e-26
sp|P44531|AFUC_HAEIN PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTE... 120 2e-26
pir||T34595 ABC-transporter ATP-binding protein - Streptomyces c... 120 3e-26
pir||C71081 probable resistance ATP-binding protein - Pyrococcus... 120 3e-26
pir||B75082 phosphate abc transporter, ATP-binding protein (pstb... 120 3e-26
pir||B81147 sulfate ABC transporter, ATP-binding protein NMB0879... 119 4e-26
sp|Q57293|AFUC_ACTPL FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC >... 119 5e-26
pir||C71197 probable ATP-binding transport protein - Pyrococcus ... 119 5e-26
pir||F81875 sulfate ABC transporter, ATP-binding protein NMA1097... 119 5e-26
gb|AAA72361.1| (L11748) methyl coenzyme M reductase system compo... 118 7e-26
pir||B36921 methyl coenzyme M reductase (EC 1.8.-.-) component A... 118 7e-26
gb|AAB85511.1| (AE000874) methyl coenzyme M reductase system, co... 118 7e-26
pir||C75369 amino acid ABC transporter, ATP-binding protein - De... 118 7e-26
gb|AAF99694.1|AF267498_4 (AF267498) ABC transporter OrfX [Strept... 118 1e-25
sp|P38045|NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC ... 117 2e-25
dbj|BAB06849.1| (AP001517) sulfate ABC transporter (ATP-binding ... 117 2e-25
pir||H75157 daunorubicin resistance ATP-binding protein (drra-2)... 117 2e-25
sp|P39459|NASD_KLEPN NITRATE TRANSPORT PROTEIN NASD >gi|2642137|... 116 5e-25
pir||F71849 amino acid ABC transporter, ATP-binding protein - He... 116 5e-25
emb|CAC11998.1| (AL445065) ABC transporter related protein [Ther... 115 6e-25
pir||H72301 ABC transporter, ATP-binding protein - Thermotoga ma... 115 8e-25
pir||F64751 probable ABC-type transport protein b0262 - Escheric... 114 1e-24
sp|P37009|AFUC_ECOLI PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTE... 114 1e-24
gb|AAD21772.1| (J05278) ChrD [Ralstonia metallidurans] 114 1e-24
pir||S58789 ATP binding protein nrtC - oscillatoriacean cyanobac... 113 4e-24
pir||S56643 ATP-binding protein nrtC - oscillatoriacean cyanobac... 113 4e-24
pir||T35941 probable ABC-type transport systsem ATP-binding prot... 113 4e-24
pir||S75959 nitrate transport protein C-1 - Synechocystis sp. (s... 112 5e-24
gb|AAK41416.1| Sugar ABC transporter [Sulfolobus solfataricus] 111 1e-23
emb|CAB37661.1| (AJ224479) cdd4-like protein [Bacillus sphaericus] 110 2e-23
dbj|BAA77930.1| (D83536) Hypothetical ABC transporter ATP-bindin... 110 2e-23
pir||H70109 ABC transporter, ATP-binding protein homolog - Lyme ... 109 4e-23
dbj|BAA05389.1| (D26358) CmpD [Synechococcus sp.] 109 5e-23
pir||S75960 nitrate transport protein D-1 - Synechocystis sp. (s... 109 6e-23
emb|CAA05977.1| (AJ003195) ATP-binding subunit [Anabaena variabi... 109 6e-23
pir||A55541 heterocyst maturation protein devA - Anabaena sp. (s... 108 8e-23
pir||B64458 high-affinity branched-chain amino acid transport AT... 108 8e-23
emb|CAB88835.1| (AL353832) putative ABC-transport protein, ATP-b... 108 8e-23
pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB... 108 1e-22
pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii... 107 2e-22
sp|P73450|NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC ... 107 2e-22
pir||B70327 ABC transporter - Aquifex aeolicus >gi|2982983|gb|AA... 105 7e-22
gb|AAG32539.1| (AY005472) SalX [Streptococcus salivarius] 105 9e-22
dbj|BAA96918.1| (AB019228) ABC transporter-like protein [Arabido... 103 3e-21
emb|CAB97048.1| (AJ272202) mitochondrial half-ABC transporter [A... 103 3e-21
gb|AAG26946.1|AC069471_7 (AC069471) P-glycoprotein, putative [Ar... 102 6e-21
gb|AAG26952.1|AC069471_13 (AC069471) P-glycoprotein, putative [A... 101 2e-20
sp|Q00449|MDR4_DROME MULTIDRUG RESISTANCE PROTEIN HOMOLOG 49 (P-... 100 2e-20
pir||D81263 probable ABC transport system ATP-binding protein Cj... 100 2e-20
gb|AAF58437.1| (AE003820) Mdr49 gene product [Drosophila melanog... 100 2e-20
emb|CAB93668.1| (AJ276653) RumF protein [Ruminococcus gnavus] 100 3e-20
dbj|BAB02852.1| (AB026644) multidrug resistance p-glycoprotein; ... 100 3e-20
pir||E82302 iron(III) ABC transporter, ATP-binding protein VC061... 100 4e-20
pir||S74476 ABC-type transport protein slr1113 - Synechocystis s... 99 9e-20
dbj|BAB02855.1| (AB026644) multidrug resistance p-glycoprotein; ... 98 2e-19
pir||H71892 osmoprotection ATP-binding protein - Helicobacter py... 97 3e-19
gb|AAD49436.1|AF083642_1 (AF083642) P-glycoprotein [Onchocerca v... 97 3e-19
dbj|BAB04537.1| (AP001509) bacitracin ABC transporter (ATP-bindi... 96 5e-19
pir||C64622 osmoprotection protein - Helicobacter pylori (strain... 96 6e-19
gb|AAG10627.1|AC022521_5 (AC022521) Putative ABC transporter [Ar... 95 1e-18
pir||T29110 multidrug resistance protein 1 - Aureobasidium pullu... 95 1e-18
sp|P34712|MDR1_CAEEL MULTIDRUG RESISTANCE PROTEIN 1 (P-GLYCOPROT... 94 2e-18
pir||T23476 hypothetical protein K08E7.9 - Caenorhabditis elegan... 94 2e-18
sp|P47705|Y467_MYCGE HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 94 2e-18
emb|CAC05746.1| (AL391751) putative peptide transport system ATP... 94 2e-18
pir||F75142 abc transporter ATP-binding protein PAB2148 - Pyroco... 93 5e-18
sp|P47650|PSTB_MYCGE PHOSPHATE TRANSPORT ATP-BINDING PROTEIN PST... 92 1e-17
emb|CAC11868.1| (AL445065) ATP-binding protein related resistanc... 92 1e-17
pir||T22090 hypothetical protein F42E11.1 - Caenorhabditis elega... 90 4e-17
sp|P36619|PMD1_SCHPO LEPTOMYCIN B RESISTANCE PROTEIN PMD1 >gi|10... 89 6e-17
pir||T41534 leptomycin B resistance protein, ABC transporter - f... 89 6e-17
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 89 1e-16
sp|Q57399|YE70_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 89 1e-16
gb|AAC28653.1| (AF070598) ABC transporter [Homo sapiens] 87 4e-16
gi|9955963 ATP-binding cassette, sub-family B, member 6 [Homo sa... 87 4e-16
gb|AAG33617.1|AF308472_1 (AF308472) ATP-binding cassette half-tr... 87 4e-16
sp|Q58429|YA23_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 85 1e-15
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 82 8e-15
pir||A70039 ABC transporter (ATP-binding protein) homolog yvfR -... 82 1e-14
gi|6005804 ATP-binding cassette, sub-family B, member 8; mitocho... 82 1e-14
dbj|BAA92038.1| (AK002018) unnamed protein product [Homo sapiens] 82 1e-14
gi|11419475 ATP-binding cassette, sub-family B, member 8 [Homo s... 82 1e-14
pir||D75447 ABC transporter, ATP-binding protein - Deinococcus r... 81 2e-14
sp|Q92337|ABC1_SCHPO ATP-BINDING CASSETTE TRANSPORTER ABC1 >gi|7... 74 3e-12
pir||E82214 galactoside ABC transporter, ATP-binding protein VC1... 73 5e-12
gb|AAD34890.1|AF141932_1 (AF141932) rhiziobicin secretion protei... 71 2e-11
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 699 bits (1785), Expect = 0.0
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG
Sbjct: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP
Sbjct: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV
Sbjct: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL
Sbjct: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
Query: 241 SIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV 300
SIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV
Sbjct: 241 SIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV 300
Query: 301 TQKCKDEEPPLVEIKKDHYVACHYPDKTREELGPLVREKLKMYSL 345
TQKCKDEEPPLVEIKKDHYVACHYPDKTREELGPLVREKLKMYSL
Sbjct: 301 TQKCKDEEPPLVEIKKDHYVACHYPDKTREELGPLVREKLKMYSL 345
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 349 bits (885), Expect = 4e-95
Identities = 173/317 (54%), Positives = 227/317 (71%), Gaps = 9/317 (2%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
ENLKKYFP+RG LF+ +V AVDG+S I++GETFGL GESGCGK+T GR +LRLIEP
Sbjct: 9 ENLKKYFPIRG-LFRTIG-WVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTILRLIEP 66
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
T+G I F G D+TKL +E++ RR+ I+FQDP SSL+PR T++ + P++ H +
Sbjct: 67 TDGKIIFMGKDVTKLKGEELKWFRRKAQIMFQDPYSSLDPRQTVFQIIMEPVKFHGIQVD 126
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
+ E++ ++ +LE+VGL E HL RYPHE SGGQ QR+++AR + P+F+VLDEPTSALD
Sbjct: 127 DPEEF--VIRLLESVGLNEMHLYRYPHEFSGGQRQRIALARLLALKPEFIVLDEPTSALD 184
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+SVQA ILN L LQ K TYLFISHD+ V++YMSDRIG+MYLGK+VE+ D +
Sbjct: 185 VSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPADRIFENP 244
Query: 250 IYHPYTAYLLLSTPALHPS---KRTSRKVILTGEVPSPINVPPGCRFHVRCPFV-TQKCK 305
+ HPYT L + P P + +++ +TGE PSPIN P GCRFH RCP+ C
Sbjct: 245 L-HPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGCRFHPRCPYAKAGLCD 303
Query: 306 DEEPPLVEIKKDHYVAC 322
EEPP+VE++KDHYVAC
Sbjct: 304 KEEPPMVEVEKDHYVAC 320
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 345 bits (876), Expect = 4e-94
Identities = 173/317 (54%), Positives = 225/317 (70%), Gaps = 9/317 (2%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
ENLKKYFPVRG L + +V AVDG+S I KGETFGL GESGCGK+T GR +LRLIEP
Sbjct: 12 ENLKKYFPVRGLL--RTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTGRTILRLIEP 69
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
T+G I F G D+TKL +E++ RR+ I+FQDP SSL+PR T++ + P+ H +
Sbjct: 70 TDGRIIFMGKDVTKLKGNELKWFRRKAQIMFQDPYSSLDPRQTVFQIIMEPVRFHGIQVD 129
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
+ E++ ++++LE+VGL E HL RYPHE SGGQ QR+++AR + P+F+VLDEPTSALD
Sbjct: 130 DPEEF--VIKLLESVGLNEMHLYRYPHEFSGGQRQRIALARLLALKPEFIVLDEPTSALD 187
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+SVQA ILN L LQ K TYLFISHD+ V++YMSDRIG+MYLGK+VE+ D +
Sbjct: 188 VSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPADKVFENP 247
Query: 250 IYHPYTAYLLLSTPALHPS---KRTSRKVILTGEVPSPINVPPGCRFHVRCPFV-TQKCK 305
+ HPYT L + P P + +++ +TGE PSP+N P GCRFH RCP+ C
Sbjct: 248 L-HPYTQMLFSAIPIPDPDIAREMKKKRMKVTGEPPSPVNPPKGCRFHPRCPYAKAGLCD 306
Query: 306 DEEPPLVEIKKDHYVAC 322
+EPPLVE++KDHYVAC
Sbjct: 307 KKEPPLVEVEKDHYVAC 323
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 340 bits (863), Expect = 1e-92
Identities = 175/321 (54%), Positives = 227/321 (70%), Gaps = 9/321 (2%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ T LKKYFPV+ F + YV AVD ++I I +G+T GL GESG GK+TFGR++LRL
Sbjct: 31 VETVGLKKYFPVKSLFFTRA--YVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRL 88
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
EPT G I+FDGID+ KL +++ RRR I+FQDP SLNPR TI++ + P+++H +
Sbjct: 89 EEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGI 148
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+ ++Y IV +L VGL E HL RYPHE SGGQ QR++IAR + P+F+VLDEPTS
Sbjct: 149 KVGDLQEY--IVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTS 206
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
ALD+SVQAQILNLL +LQRK++LTYLFISHD+ V++YMSD I +MYLGK+VE ++
Sbjct: 207 ALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVF 266
Query: 247 KGEIYHPYTAYLLLSTPALHP--SKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
+ + HPYT LL S P P +KR SR + + GE PSPIN P GCRF RCP KC
Sbjct: 267 EKPL-HPYTKVLLESIPVPDPEVAKRRSR-IRIKGEPPSPINPPSGCRFRTRCPIAVDKC 324
Query: 305 KDEEPPLVEIKKDHYVACHYP 325
EEPPL E+++ H+VAC P
Sbjct: 325 L-EEPPLEEVERGHWVACWRP 344
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 328 bits (832), Expect = 6e-89
Identities = 161/333 (48%), Positives = 229/333 (68%), Gaps = 5/333 (1%)
Query: 3 MKDFIV-TENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
MK+ ++ + L K+F V G FK+K + AVDG+ + I GET G+ GESGCGKST G+
Sbjct: 1 MKEVLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQ 60
Query: 62 LLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPL 121
LL+RL+EPT G++ F G D L + +R+ R + I+FQDP SSLNPRMT+ + + PL
Sbjct: 61 LLMRLLEPTRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPL 120
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
+ HRLA+ + ++ E+++AVGL + RYPHE SGGQ QR+ IARAI P ++
Sbjct: 121 KTHRLAKGND-LIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIIC 179
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DEP SALD+S+QAQILNL+V LQ++F LT+LFI+H + ++++SDR+ +MYLGKVVE+ S
Sbjct: 180 DEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELAS 239
Query: 242 IDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRK-VILTGEVPSPINVPPGCRFHVRCPFV 300
D + HPY+ L+ + P P+ R +K V L G++PSP++ P GCRFH RCP+
Sbjct: 240 -KDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYA 298
Query: 301 TQKCKDEEPPLVEIKKDHYVACHYP-DKTREEL 332
KC +EP L E + H+VACH+P +KTR++L
Sbjct: 299 QDKCTVQEPALTEKEPGHFVACHFPLEKTRKDL 331
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 327 bits (830), Expect = 1e-88
Identities = 157/320 (49%), Positives = 220/320 (68%), Gaps = 3/320 (0%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
K + +NL K F + GG F +K V AVD +S ++ +GE G+ GESGCGKST G+ +
Sbjct: 3 KPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAI 62
Query: 64 LRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
LRLIEP+ G +YF G +IT L + +MRK RR M I+FQDP +SLNPR TI ++ PL +
Sbjct: 63 LRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPLIV 122
Query: 124 HRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDE 183
H++ +++E+ +++ E+LE VGL +H +RYPH+ SGGQ QR+ IARA+ +P V+ DE
Sbjct: 123 HQIG-TKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICDE 181
Query: 184 PTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSID 243
P SALD+SVQ+QILNL+ +L+ F LTY+FI+HD+SV++++SDR+ +MYLG++VE+ + D
Sbjct: 182 PVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATKD 241
Query: 244 DFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQK 303
+ HPYT LL + P P K++L G+VPSP N P GC FH RCP
Sbjct: 242 QLFENP-KHPYTRALLSAVPVPDPD-AAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDV 299
Query: 304 CKDEEPPLVEIKKDHYVACH 323
CK + P L E +K HYVACH
Sbjct: 300 CKIKRPSLHEKEKGHYVACH 319
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 327 bits (829), Expect = 1e-88
Identities = 161/327 (49%), Positives = 221/327 (67%), Gaps = 6/327 (1%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
K+ + E LK+YFP++GG+ + +V AVD +S I +GET + GESGCGKST GR +
Sbjct: 3 KELLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAI 62
Query: 64 LRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
LRL EPT+G I F G D+ L+K EMRK R+ + I+FQDP +S+NPR TI L+ +EI
Sbjct: 63 LRLDEPTDGKIEFQGEDLLSLNKREMRKKRKDLQIIFQDPYASINPRQTIRQVLEEAMEI 122
Query: 124 HRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDE 183
++ +++ ++I E+++ VGLG R+PHE SGGQ QR+ IARA+ NP +V DE
Sbjct: 123 QKVVP-RDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVCDE 181
Query: 184 PTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSID 243
SALD+S+QAQ++NLL LQR+F LTYLFISHD+ V++++SDR+ +MYLG++VEI
Sbjct: 182 AVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADKT 241
Query: 244 DFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQK 303
+ HPYT LL + P P K+ R +IL G+VPSPI+ P GCRFH RCPF T K
Sbjct: 242 SLFENP-QHPYTKALLSAIPVPDPEKKKER-IILKGDVPSPIDPPNGCRFHTRCPFATDK 299
Query: 304 CKDEEPPLVE---IKKDHYVACHYPDK 327
C+ E P L +K H ACHY ++
Sbjct: 300 CRTETPELRTADYMKDGHLAACHYMEE 326
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 324 bits (823), Expect = 7e-88
Identities = 158/319 (49%), Positives = 218/319 (67%), Gaps = 12/319 (3%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
++KKYFP+R GLF++K V AVDG+S +++KGET G+ GESGCGKST GR ++RL +PT
Sbjct: 14 DVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIRLYKPT 73
Query: 71 EGSIYFDGIDITKLDKDEMRK-LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
EG I F G DI+ L ++++RK +R+ + +VFQDP +SLNPR T+ +K P H + +
Sbjct: 74 EGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFNTHNMY-T 132
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
E+ +K+ E+L VGL RYPHE SGGQ QR+ IARA+ NP+ ++ DEP SALD
Sbjct: 133 MRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELIIADEPVSALD 192
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+S+Q Q++NL+ LQ +FNLTYLFISHD+SV++++SDR+G+MYLGK++E+ K E
Sbjct: 193 VSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTG-----KHE 247
Query: 250 IY----HPYTAYLLLSTPALHPSKRTSR-KVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
+Y HPYT LL S P R +++L GE+PSP N P GC FH RCP C
Sbjct: 248 LYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVAKPIC 307
Query: 305 KDEEPPLVEIKKDHYVACH 323
K++ P E H+VACH
Sbjct: 308 KEQIPEFKEAAPSHFVACH 326
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 321 bits (813), Expect = 1e-86
Identities = 158/318 (49%), Positives = 214/318 (66%), Gaps = 3/318 (0%)
Query: 5 DFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLL 64
D + NL+KYFP+RGGL + V AV+ I+ + KGE GL GESG GK+T GR LL
Sbjct: 26 DLLEVNNLQKYFPIRGGLMSRVVANVKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALL 85
Query: 65 RLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
RLIEPT G + F+G DITKL K +MR RR M I+FQDP +SLNPRMT+ D L ++IH
Sbjct: 86 RLIEPTGGQVIFNGTDITKLGKSQMRDYRREMQIIFQDPFASLNPRMTVSDILGEAMQIH 145
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
L + + D+I E+L+ VGL EH+ RYPHE SGGQ QR+ IARA+ +P F+V DEP
Sbjct: 146 NL-HPGKARVDRIAELLQRVGLRPEHMGRYPHEFSGGQRQRIGIARALAVDPSFIVADEP 204
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
SALD+S+QAQ++NL+ +LQ + LT LFI+HD+ V++Y+ DR+ +MYLG+++EI +
Sbjct: 205 VSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIAPSRE 264
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
+ HPYT LL ++P P+ + R +IL G++PSPIN P GC F RC + C
Sbjct: 265 LNRNP-KHPYTEALLSASPVPDPTIKRQR-IILEGDIPSPINPPSGCVFRTRCRYAIADC 322
Query: 305 KDEEPPLVEIKKDHYVAC 322
+ P L E+ DH+ AC
Sbjct: 323 ANIVPELREVSPDHFKAC 340
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 318 bits (807), Expect = 5e-86
Identities = 159/322 (49%), Positives = 217/322 (67%), Gaps = 4/322 (1%)
Query: 12 LKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE 71
L+K+FP+R GL +++ V AVDGI +R GET G+ GESGCGKST GRL+ RL+EPT
Sbjct: 45 LQKHFPIRKGLLQRQVGAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGRLITRLLEPTA 104
Query: 72 GSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
G + F G DIT L MR LRR + ++FQDP SSLNPR TI + P ++ + + E
Sbjct: 105 GKVEFQGKDITHLGVGGMRPLRRDVQMIFQDPYSSLNPRHTIGTIVSAPFKLQGV-QPEG 163
Query: 132 EKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
++ +L VGL EH +RYPHE SGGQ QR+ IARA+ NP VV DEP SALD+S
Sbjct: 164 GVKKEVQRLLSVVGLNPEHYNRYPHEFSGGQRQRIGIARALALNPRLVVADEPVSALDVS 223
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
+QAQ++NLL +LQ++ LTY+ I+HD+SV++++SDRI +MYLGK++E+ D K +
Sbjct: 224 IQAQVVNLLDDLQQELGLTYVIIAHDLSVVRHVSDRIAVMYLGKIMELADRDLLYKTPM- 282
Query: 252 HPYTAYLLLSTPALHPSKR--TSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEP 309
HPYT L+ + P P++R S +++L G+VPSPI P GCRFH RC TQ C EP
Sbjct: 283 HPYTKALMSAVPIPDPARRGAKSERILLKGDVPSPIAPPSGCRFHTRCWKATQVCTTTEP 342
Query: 310 PLVEIKKDHYVACHYPDKTREE 331
PL E++ VACH+P+ ++
Sbjct: 343 PLKELRPGQQVACHHPENFEDQ 364
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 318 bits (806), Expect = 7e-86
Identities = 154/323 (47%), Positives = 224/323 (68%), Gaps = 9/323 (2%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
+KMK + T +LKKYFP Q + AVDGISI I++GET GL GESGCGKST G
Sbjct: 8 IKMKPLLQTVDLKKYFP-------QGKRILKAVDGISIEIKEGETLGLVGESGCGKSTLG 60
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
R +L+L+ P G I+F+G DIT L+ EM+ R++M I+FQDP SLNP+MT+ ++ P
Sbjct: 61 RTILKLLRPDGGKIFFEGKDITNLNDKEMKPYRKKMQIIFQDPLGSLNPQMTVGRIIEDP 120
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
L IH++ +++E+ ++ E+L+ VG+G E ++ +PHE SGGQ QR+ IARA+ NP F+V
Sbjct: 121 LIIHKIG-TKKERRKRVEELLDMVGIGREFINSFPHEFSGGQQQRIGIARALALNPKFIV 179
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
DEP SALD+S+QAQI++LL +Q+K ++YLFI+H+++V++++S ++ +MYLGK+VE
Sbjct: 180 CDEPVSALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKIVEYG 239
Query: 241 SIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV 300
+D I HPYT LL S P + + R L GE+PSPI++P GCRF RC
Sbjct: 240 DVDKIFLNPI-HPYTRALLKSVPKIPWDGQKQRFYSLKGELPSPIDLPKGCRFQTRCTEK 298
Query: 301 TQKCKDEEPPLVEIKKDHYVACH 323
C ++EP L E++K+H+V+CH
Sbjct: 299 KAICFEKEPELTEVEKNHFVSCH 321
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 316 bits (800), Expect = 3e-85
Identities = 165/332 (49%), Positives = 228/332 (67%), Gaps = 12/332 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNL-YVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE 68
+NLKKYFP+ F++K + Y+ AVDGIS +I +GET GL GESGCGK+T +L++R IE
Sbjct: 7 KNLKKYFPIIKRGFRRKVVGYLKAVDGISFHIEEGETLGLVGESGCGKTTTAKLIMRGIE 66
Query: 69 PTEGSIYF--DG--IDITKLDKDEMRK--LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
PTEG I DG +DITKL + E+R+ +RR + ++FQDP SSLNPRMT+ D + PL
Sbjct: 67 PTEGEIVLNMDGEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTVRDIIAEPLV 126
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
++ + + +EE + ++L AVGL E++ RYPH SGGQ QR++IARAI P V+ D
Sbjct: 127 VNGVIKGKEEIDAIVSDLLRAVGLRPEYMQRYPHAFSGGQRQRIAIARAIALKPKLVLCD 186
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPTSALD+SVQAQI+NLL +LQ+++NLTYLFISHD+ V++++++R+ +MY+G++VE+
Sbjct: 187 EPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEHITNRVAVMYVGRIVELAET 246
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQ 302
++ HPYT LL + P P KR +K LTGEVP P N P GC FH RCP+
Sbjct: 247 EELFSSP-KHPYTEALLSAVPKPDP-KRKRKKAQLTGEVPDPSNPPSGCYFHPRCPYAKA 304
Query: 303 KCKDEEPPLVEIKKD---HYVACHYPDKTREE 331
CK+ P L + D H VACH+ D + E
Sbjct: 305 ICKEVYPDLRNVGTDQNPHLVACHFADSLKLE 336
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 313 bits (793), Expect = 2e-84
Identities = 158/327 (48%), Positives = 225/327 (68%), Gaps = 10/327 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+ LKKYFP+ G FK+ YV AVD +S +I++GET L GESGCGK+T + +LR I+P
Sbjct: 7 KGLKKYFPLTKGFFKKVVGYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKSILRAIDP 66
Query: 70 TEGSI--YFDG--IDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
T+G + + DG ++I KL +DE++ RR M ++FQ+P +SLNPRM + + + PL ++
Sbjct: 67 TDGDVILHLDGKDVNIAKLSRDELKPYRRYMQMIFQNPYTSLNPRMKVKEIVGEPLLVNG 126
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+A+ +E + D++ E+L+AVGL E++ RYPH SGGQ QR+ IARAI P VV DEPT
Sbjct: 127 IAKGKELE-DRVAELLKAVGLRPEYMIRYPHAFSGGQRQRIVIARAIALRPKLVVCDEPT 185
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
SALD+S++AQILNLL++LQ +F LTYLFI+HD+SV++++SDR+ +MYLGK+VE+ S ++
Sbjct: 186 SALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKIVELSSTEEI 245
Query: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
+ HPYT LL S P P R V + GEVP+P N P GC FH RCP+ CK
Sbjct: 246 FENP-KHPYTETLLRSVPKPDPDLR-EELVPIEGEVPNPANPPSGCYFHPRCPYAKSICK 303
Query: 306 DEEPPLVEIKKD---HYVACHYPDKTR 329
+E P + + HYVACH+ + +
Sbjct: 304 EEYPEFRNLGTEDNPHYVACHFAESLK 330
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 309 bits (783), Expect = 3e-83
Identities = 160/323 (49%), Positives = 216/323 (66%), Gaps = 10/323 (3%)
Query: 7 IVTENLKKYFPVRGG----LFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
I +NLKKYFPV+ G L ++ +V AVDG++ I +G++ GL GESG GK+T GR+
Sbjct: 4 IEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGRV 63
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+LRL EPT+G I FDG DITKL K+EMRKLR+ M I+FQDP +SLNP M + ++ LE
Sbjct: 64 ILRLEEPTDGKIIFDGRDITKLSKEEMRKLRKEMQIIFQDPMASLNPYMRVGKAIEHALE 123
Query: 123 IHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
IH + + K + ++E+L V L E+ RYP ELSGGQ QRV IARA+I P VV
Sbjct: 124 IHGIGDRSSRK-EMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIARALILKPRLVV 182
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
DE + LD+SV++Q+L LL L+++FNLT LFI+HD++ +Y+ D I +MYLGK+VEI
Sbjct: 183 ADEAVAMLDVSVRSQLLRLLQELRKEFNLTMLFITHDLATTKYVCDEIAVMYLGKIVEIG 242
Query: 241 SIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV 300
+D HPYT L+ + P PS + +K I GE P+PI+VP GCRFH RCP+
Sbjct: 243 DFEDIYLNP-KHPYTQALISAVP--EPSLKKKKKFIPEGETPNPIDVPSGCRFHPRCPYR 299
Query: 301 TQKCKDEEPPLVEIKKDHYVACH 323
C EEP L ++++H VACH
Sbjct: 300 MDICMKEEPQLKAVEENHKVACH 322
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 307 bits (777), Expect = 2e-82
Identities = 152/323 (47%), Positives = 220/323 (68%), Gaps = 10/323 (3%)
Query: 10 ENLKKYFPVRGGLFK----QKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
ENLKKYFP+R G + +V AVDGIS + K + F L GESGCGK+T G+L+++
Sbjct: 9 ENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVK 68
Query: 66 LIEPTEGSIYFDGIDITKL-DKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
L+EPT+G IY +G D+T+L K+E++ RRR+ ++FQDP SS+NPR IYD L+ PL IH
Sbjct: 69 LLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIH 128
Query: 125 RLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ E+ E+ + I + LE V + EE++ R+PH LSGGQ QRV+IARA+I NP F+V D
Sbjct: 129 GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVAD 188
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EP S LD+S++A+IL L+ L+ K +TYL+I+HD+S +Y +D I +MYLG++VE+
Sbjct: 189 EPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPA 248
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKR-TSRKVILTGEVPSPINVPPGCRFHVRCPFVT 301
+ + HPYT LL + P P ++ +++ + GEVPS +N+PPGCRFH RC +
Sbjct: 249 KEVIDNPL-HPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFK 307
Query: 302 Q-KCKDEEPPLVEIKKDHYVACH 323
+ C +EP L+E +H+V CH
Sbjct: 308 KGLCDTKEPKLIEYSHNHWVECH 330
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 302 bits (764), Expect = 6e-81
Identities = 151/323 (46%), Positives = 219/323 (67%), Gaps = 10/323 (3%)
Query: 10 ENLKKYFPVRGGLFK----QKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
ENLKKYFPVR G + +V AVDG+S I K + F L GESGCGK+T G+L+++
Sbjct: 9 ENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKTTTGKLIVK 68
Query: 66 LIEPTEGSIYFDGIDITKL-DKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
L+EPT+G IY +G D+T+L K+E++ RR++ ++FQDP SS+NPR IYD L+ PL IH
Sbjct: 69 LLEPTDGKIYLEGQDVTELRTKEEIKAYRRKVQMIFQDPFSSMNPRFRIYDVLEEPLLIH 128
Query: 125 RLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ E+ E+ + I + LE V + EE++ R+PH LSGGQ QRV+IARA+I NP FVV D
Sbjct: 129 GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFVVAD 188
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EP S LD+S++A+IL L+ L+ K +TYL+I+HD+S +Y +D I +MYLG++VE+
Sbjct: 189 EPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPA 248
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKR-TSRKVILTGEVPSPINVPPGCRFHVRCPFVT 301
+ + HPYT LL + P P ++ +++ + GEVPS +N+P GCRFH RC +
Sbjct: 249 KEIIDNPL-HPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPSGCRFHPRCIYFK 307
Query: 302 Q-KCKDEEPPLVEIKKDHYVACH 323
+ C ++P L+E +H+V CH
Sbjct: 308 KGLCDVKQPQLIEYSHNHWVECH 330
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 301 bits (762), Expect = 9e-81
Identities = 153/305 (50%), Positives = 205/305 (67%), Gaps = 11/305 (3%)
Query: 26 KNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLD 85
+NL V A DGI + I +GET GL GESGCGKST GR +L+L +PT G I+F+G +IT
Sbjct: 81 QNLCVIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKPTAGEIFFEGENITNYT 140
Query: 86 KDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIV-EILEAV 144
+M LR++M I+FQDP SSLNP+MT+ + L H + + ++ Y+K V EI+
Sbjct: 141 VTQMMPLRKKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAYEKYVKEIMNTC 200
Query: 145 GLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
GL + + RYPHE SGGQ QR+ IARA+ P F+V DE SALD+S+Q+QI+NLL +LQ
Sbjct: 201 GLADYMIYRYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALDVSIQSQIINLLNDLQ 260
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY----HPYTAYLLL 260
++FNL+YLFISHD+SV++++SDRIG+MYLG +VE K E+Y HPYT LL
Sbjct: 261 KEFNLSYLFISHDLSVVKHISDRIGVMYLGNMVEFTD-----KREMYANPLHPYTKVLLS 315
Query: 261 STPALHPSK-RTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHY 319
+ P K RT R+++L G++PS I P GC+FH RCP CK E P E K H+
Sbjct: 316 AIPETDLQKMRTKRRILLEGDIPSNIITPTGCKFHTRCPIAKDICKREIPQFKEEKPGHF 375
Query: 320 VACHY 324
VACH+
Sbjct: 376 VACHF 380
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 298 bits (756), Expect = 5e-80
Identities = 148/277 (53%), Positives = 195/277 (69%), Gaps = 7/277 (2%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
V AVDG+ +++ +GET GL GESGCGKST GR +LRL+EPT+G + F G D+T L+ DE+
Sbjct: 532 VKAVDGVDLDVYEGETLGLVGESGCGKSTTGRSILRLVEPTDGRVVFAGDDVTDLNDDEL 591
Query: 90 RKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLA------ESEEEKYDKIVEILEA 143
R R M ++FQDP SSL+PR +I DT+ PL+IH L + + + D+++++++A
Sbjct: 592 RATRTDMQMIFQDPLSSLDPRQSIGDTILEPLQIHDLPANPGAQSTRQARRDRVIDLMDA 651
Query: 144 VGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
VGL RYPHELSGGQ QRV IARA+ +PDF+V DEP SALD+SVQAQILNLL +L
Sbjct: 652 VGLDPSQYDRYPHELSGGQRQRVGIARALAVDPDFIVADEPVSALDVSVQAQILNLLEDL 711
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
Q +F+LTYLFI+HD+SV++++ DRI +MYLGK+VE HPYT LL S P
Sbjct: 712 QDEFDLTYLFIAHDLSVVRHICDRIAVMYLGKIVETAQTAQLFSTP-KHPYTKSLLSSIP 770
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV 300
P T ++IL G+VPSPI+ P GCRF RCP V
Sbjct: 771 DPDPLATTDDRIILEGDVPSPIDPPSGCRFRTRCPSV 807
Score = 170 bits (426), Expect = 2e-41
Identities = 96/261 (36%), Positives = 146/261 (55%), Gaps = 36/261 (13%)
Query: 79 IDITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE--------- 128
+D+T + MR LR MG++FQDP +SLNP +T+ + + L +HR E
Sbjct: 213 VDLTAAPERAMRDLRGGEMGMIFQDPMTSLNPSLTVGEQVAESLRLHRYGEQPTDSWLNG 272
Query: 129 ---------SEEEKYDKIVEILEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPD 177
++E+ +V++L+AVG+ E L YPHE SGG QRV IA A+ P
Sbjct: 273 LRAAISRGDTDEQVVADVVDVLDAVGIPEPETRLDEYPHEFSGGMRQRVLIAIALACRPR 332
Query: 178 FVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
++ DEPT+ALD+++QAQIL+ + +LQ +F ++ LFI+HD+ V+ DR+ +MY G++V
Sbjct: 333 LLIADEPTTALDVTIQAQILDRISDLQDEFGMSVLFITHDLGVVAETCDRVAVMYAGEIV 392
Query: 238 EILSIDDFRKGEIYHPYTAYLLLSTP-----ALHPSKRTSRKVILTGEVPSPINVPPGCR 292
E +++ HPYT LL S P LHP + G VP I++P GC
Sbjct: 393 EEGPVEEIFHNP-SHPYTYALLESIPRDDADRLHP---------IEGNVPDLIDLPSGCH 442
Query: 293 FHVRCPFVTQKCKDEEPPLVE 313
F RCP+ + C ++ P +E
Sbjct: 443 FEARCPWASDACVGDDIPYME 463
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 298 bits (756), Expect = 5e-80
Identities = 154/321 (47%), Positives = 219/321 (67%), Gaps = 12/321 (3%)
Query: 10 ENLKKYFPVRGG----LFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
ENLKKYFPV+ L + +V AVDG+S +++GE L GESGCGK+T GR+++
Sbjct: 5 ENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGRIIVG 64
Query: 66 LIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
L PT G IYF +IT L ++E R+++R + +VFQDP +SLNPRM I + L L IH
Sbjct: 65 LERPTSGKIYFKDREITSLSEEEQRRMKRHIQMVFQDPYASLNPRMKIGEHLVESLTIHG 124
Query: 126 LAESEEEKYDKIVEILEAVGL-GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+AE++E + + + +L+ VGL GE+ +R P++LSGGQ QRV+IARA+I PDFVV DEP
Sbjct: 125 IAENDEAR-EMAMSMLDRVGLPGEQFFNRMPYQLSGGQRQRVAIARAMILKPDFVVADEP 183
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
S +D+S++A IL+LL++ + ++NL+ LFI+HD+SV + + DRI +MYLGK++EI +
Sbjct: 184 VSMIDVSLRAAILDLLMSFRDEYNLSMLFITHDLSVARIVGDRIAVMYLGKIMEIGKTRE 243
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
HPYTA LL S P+ + RKV + G++ +PI++P GCR+H RCPF +KC
Sbjct: 244 VIHNP-RHPYTAALLSSVPSF---VKKGRKVEIIGDIANPIDIPSGCRYHPRCPFAREKC 299
Query: 305 KDEEPPLVEIKKDHYVACHYP 325
K EEP L +H ACHYP
Sbjct: 300 KKEEPELE--GGEHSFACHYP 318
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 294 bits (746), Expect = 7e-79
Identities = 159/385 (41%), Positives = 228/385 (58%), Gaps = 62/385 (16%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
++ + ENL K+FP+R G+FK+ +V AVDG+S +I +GETFGL GESGCGK+T G L
Sbjct: 3 REILRVENLVKHFPIRAGVFKRIVGWVKAVDGVSFSINEGETFGLVGESGCGKTTIGMTL 62
Query: 64 LRL---------IEPTEGSIYF---------------------DGIDITKLD-------- 85
LRL ++ + + YF D+ KL+
Sbjct: 63 LRLYEPTSGRIIVDNEDTTYYFMPRSKAKKYIKQTYLSRFVNMKESDVEKLEGVDREYAR 122
Query: 86 ---------------------KDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
++ +K RR M IVFQDP SSLNPR+ + + + H
Sbjct: 123 IFFEEAKGSPKKFMSILLDDLPEKRKKFRREMQIVFQDPYSSLNPRLRVKSIVGEGIVTH 182
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
R+A +E + +I EILE VG+ ++ R+PHE SGGQ QR+ IARA+ P VV DE
Sbjct: 183 RIARGKEVE-KRIKEILEDVGIPSAYVYRFPHEFSGGQRQRIGIARALALEPKLVVADEA 241
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
+ALD+S+++QI+NL+ +LQR+ LTY+FISHD++V++++SDRIG+MYLGK+VE+ D
Sbjct: 242 VAALDVSIRSQIINLMEDLQREHKLTYIFISHDLAVVKHISDRIGVMYLGKMVELAPKKD 301
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
+ + HPYT L+ + P P+K+ R +IL G+VPSPIN P GCRFH RCP + C
Sbjct: 302 LFEKPL-HPYTVALMSAIPVPDPTKKRER-IILKGDVPSPINPPSGCRFHTRCPIAKEIC 359
Query: 305 KDEEPPLVEIKKDHYVACHYPDKTR 329
EEP E+++ H+VACH+P + R
Sbjct: 360 SKEEPAFREVEEGHFVACHFPGELR 384
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 293 bits (743), Expect = 2e-78
Identities = 152/324 (46%), Positives = 215/324 (65%), Gaps = 6/324 (1%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M I +NL K FPV + +K + + AVD +S I+K E GL GESGCGKST G
Sbjct: 1 MTSDTLIEVKNLTKLFPVTSSILGKK-ISIRAVDNVSFEIKKNEILGLVGESGCGKSTLG 59
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
+LL+RL+EPT G++ F G DI KL ++++ R+ + +VFQ+P +S +PR+T+++ + P
Sbjct: 60 KLLVRLLEPTSGTVLFKGQDIYKLRGKKLKEYRKSVQMVFQNPYTSFDPRLTLFENIAEP 119
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDF 178
L H+LA ++EE ++ E VGL E+ L RYPHELSGGQLQR SIARAI P+F
Sbjct: 120 LYTHKLALNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAIALEPEF 179
Query: 179 VVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
+V DEPTS LD S+++ ILNL+ L+++ + ++LFI+HD+ Y++DRI +MYLGK+VE
Sbjct: 180 IVADEPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMYLGKIVE 239
Query: 239 ILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCP 298
I + K + HPYT LL + + P + ++ + GE P P+ CRF RCP
Sbjct: 240 IGESKEVLKNPL-HPYTQALLEANLPIDPD-ASLKEPKVKGE-PKPVFETGYCRFFPRCP 296
Query: 299 FVTQKCKDEEPPLVEIKKDHYVAC 322
+ +KCK EEPPLVE+KKDHYVAC
Sbjct: 297 YAFEKCKKEEPPLVEVKKDHYVAC 320
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 291 bits (738), Expect = 6e-78
Identities = 145/294 (49%), Positives = 202/294 (68%), Gaps = 5/294 (1%)
Query: 26 KNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLD 85
K V AVDG++ IR+GETFGL GESGCGKST GR+L+RL +PTEGS+ + G ++ L
Sbjct: 20 KKRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQPTEGSVTYRGTNLHALS 79
Query: 86 KDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
+ E R++ ++FQDP +SLNPRMT+ + + P+EIH L + + + + E+LEAVG
Sbjct: 80 EKEQFAFNRKLQMIFQDPYASLNPRMTVREIILEPMEIHNLYNTHKARLSVVDELLEAVG 139
Query: 146 LGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQR 205
L + SRYPHE SGGQ QR+ IARA+ NP+F+V DEP SALD+SVQAQ++NLL LQ+
Sbjct: 140 LHPDFGSRYPHEFSGGQRQRIGIARALSLNPEFIVADEPISALDVSVQAQVVNLLKRLQK 199
Query: 206 KFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPAL 265
+ LT+LFI+HD+S+++++SDRIG+MYLG ++EI + E HPYT LL S P
Sbjct: 200 EKGLTFLFIAHDLSMVKHISDRIGVMYLGHMMEITESGTLYR-EPLHPYTKALLSSIPIP 258
Query: 266 HPSKRTSR-KVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDH 318
P R +++L GE+PSP+N P GC F RCP ++C + E + KK +
Sbjct: 259 DPELEDKRERILLKGELPSPVNPPSGCVFRTRCP---ERCLNVENLVPSFKKSN 309
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 291 bits (738), Expect = 6e-78
Identities = 147/314 (46%), Positives = 203/314 (63%), Gaps = 3/314 (0%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
E+L K++P+ G FK V AV+ +S ++ GET + GESGCGKST RLL+RLI+P
Sbjct: 9 ESLTKHYPIEAGWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLARLLMRLIDP 68
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
T G + +G DI L K+E+R RRRM +VFQDP SSLNPR+T + P+E S
Sbjct: 69 TSGRVLVEGTDIAGLRKNELRAWRRRMQMVFQDPYSSLNPRLTAGQIITEPVENFECL-S 127
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
++ + ++L VG+ E SRYP E+SGGQ QR+ IARA+ P ++ DE SALD
Sbjct: 128 RRQRQELATDLLRKVGMSPEMASRYPSEMSGGQRQRLGIARALALKPSLIIADEAVSALD 187
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+SVQAQILNLL++LQ++ + +FISHD++V++++ R+ +MYLG++VE LS D +
Sbjct: 188 VSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRVAVMYLGRIVE-LSPRDALFAK 246
Query: 250 IYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEP 309
HPYT L+ + P P+ R +V L GEVPSP+N P GC FH RCP +C+ E P
Sbjct: 247 PVHPYTEALIAAAPVPDPA-RARLEVPLEGEVPSPVNPPSGCAFHPRCPLAVDRCRAEVP 305
Query: 310 PLVEIKKDHYVACH 323
PLV + VACH
Sbjct: 306 PLVPMPDGRAVACH 319
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 288 bits (730), Expect = 5e-77
Identities = 145/330 (43%), Positives = 214/330 (63%), Gaps = 19/330 (5%)
Query: 12 LKKYFPVRGG-LFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
L K++P+ G LFK++ V AVDG+ + +GET G+ GESGCGKST ++L+ L PT
Sbjct: 14 LVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTVAKMLVNLERPT 73
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G I + G DIT+L ++ +RR + +VFQDP +SLNPRMT+ D + +IH +
Sbjct: 74 AGEIRYKGEDITRLSGRALKSVRRNIQMVFQDPYTSLNPRMTVGDIIGEAYDIHPEVAPK 133
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
++ ++ ++L+ VGL E+++RYPH+ SGGQ QR+ IAR + P+ +V DEP SALD+
Sbjct: 134 GDRRRRVQDLLDVVGLNPEYINRYPHQFSGGQRQRIGIARGLALRPEIIVADEPVSALDV 193
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
SVQAQ++NL+ LQ +F+L+Y+FI+HD+S+++++SDR+G+MYLG++VE R EI
Sbjct: 194 SVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRIVE-----TGRDEEI 248
Query: 251 Y----HPYTAYLLLSTPALHPSKRTSR-KVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
Y HPYT LL + P P R R ++IL+G+VPSP N+P GCRF RC ++C
Sbjct: 249 YDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVPSPTNIPSGCRFRTRCWKARERCA 308
Query: 306 DEEPPL--------VEIKKDHYVACHYPDK 327
E P L V H ACH+ ++
Sbjct: 309 LEVPALAVPAEFRSVSGPAAHDSACHFAEE 338
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 286 bits (724), Expect = 3e-76
Identities = 142/325 (43%), Positives = 215/325 (65%), Gaps = 5/325 (1%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ + +L +++ V GLFK + V A++G+S + G+T + GESGCGKST R
Sbjct: 1 METVLTARDLTRHYEVSRGLFKG-HAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARA 59
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L + EPT GS+ G ++ KD+ R+LRR + +VFQ+P +SLNPR I D L PL
Sbjct: 60 LTLIEEPTSGSLKIAGQEVKGASKDQRRQLRRDVQMVFQNPYASLNPRQKIGDQLAEPLL 119
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
I+ A S EE+ +K+ +++ VGL EH RYPH SGGQ QR+++ARA++ P +V D
Sbjct: 120 INT-ALSREERREKVQQMMRQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVAD 178
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPTSALD+S+QAQ+LNL ++LQ++F Y+FISH+++V+++++D + +MYLG+ E+
Sbjct: 179 EPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGPA 238
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQ 302
D + + HPYT LL +TPA+HP T K+ + GE+P+P+N P GC FH RCP+ T+
Sbjct: 239 DKLYENPL-HPYTRALLSATPAIHPDP-TKPKIRIQGELPNPLNPPEGCAFHKRCPYATE 296
Query: 303 KCKDEEPPLVEIKKDHYVACHYPDK 327
+C+ E P L + VACH+ ++
Sbjct: 297 RCRSEVPEL-RLLDQRQVACHHAEQ 320
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 283 bits (716), Expect = 2e-75
Identities = 143/315 (45%), Positives = 211/315 (66%), Gaps = 4/315 (1%)
Query: 12 LKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE 71
LKKY+PV+ GLF K V A+DG+S + +G+T + GESGCGKST GRLL + EPT+
Sbjct: 17 LKKYYPVKKGLFA-KPQQVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLTMIEEPTK 75
Query: 72 GSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
G +Y+ G + + D + R+++ IVFQ+P +SLNPR I L+ PL I+ ++E
Sbjct: 76 GELYYKGHNFLENDSETKALRRKKIQIVFQNPYASLNPRKKIGSILEEPLIINTKLSAKE 135
Query: 132 EKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
+ +K++ ++E VGL E RYPH SGGQ QR++IAR ++ +PD VV DEP SALD+S
Sbjct: 136 RR-EKVLSMMEKVGLRAEFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVADEPVSALDVS 194
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
V+AQ+LNL+++LQ + L+Y+FISHD+SV+++++D + +MYLG+ +E + +
Sbjct: 195 VRAQVLNLMMDLQDELGLSYVFISHDLSVVEHIADEVMVMYLGRCIEKGTTEQIFSNP-Q 253
Query: 252 HPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPL 311
HPYT LL +TP L P+ R R + LTGE+PSPIN P GC F+ RC T+KC++ +P L
Sbjct: 254 HPYTKALLSATPRLSPNLRRER-IKLTGELPSPINPPKGCAFNPRCWKATEKCRENQPHL 312
Query: 312 VEIKKDHYVACHYPD 326
+ +AC + D
Sbjct: 313 EQHTDGKLIACFHID 327
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 283 bits (716), Expect = 2e-75
Identities = 157/379 (41%), Positives = 218/379 (57%), Gaps = 67/379 (17%)
Query: 11 NLKKYFPVRGGLFKQKNL-YVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+L+KYFP+R G +K + YV AVD IS ++ KG+TF L GESGCGK+T + +LRL P
Sbjct: 8 SLRKYFPIRKGFLVKKIVGYVKAVDDISFSVEKGKTFALVGESGCGKTTTAKTILRLTNP 67
Query: 70 TEGSIYFDGIDIT-----KLDK---------DEMRKLRRRMG-----------------I 98
T G + DG D T + D D R++R ++ I
Sbjct: 68 TAGRVVIDGDDTTYYFMKRRDAENYLETTYVDIFREMREKLSPDQIVDVLEDVDKKYAEI 127
Query: 99 VFQDPKSS---------------------------------LNPRMTIYDTLKRPLEIHR 125
F++ K S LNPRMT+ D L P+ H
Sbjct: 128 FFKEAKESEEKFYQILLDDIDEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILTEPILFHG 187
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
LA++ EE D ++L++VGL E HL RYPH+ SGGQ QR++IARAI NP+ V+LDEPT
Sbjct: 188 LAKTREEAVDMAKDLLKSVGLKEYHLERYPHQFSGGQRQRIAIARAISINPEIVILDEPT 247
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
++LD+SVQAQ++NL + LQ + TYLFISHD+ +++++S +GIMYLG++VE+ + D+
Sbjct: 248 ASLDVSVQAQVINLFLKLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEMGNTDEI 307
Query: 246 RKGEIYHPYTAYLLLSTPALHPS-KRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
+ HPYT LL + P P +RT +++IL G VPSPIN P GC FH RCP+ C
Sbjct: 308 FDNPL-HPYTQALLSAVPVPDPKVERTRKRIILRGGVPSPINRPTGCFFHPRCPYKMPVC 366
Query: 305 KDEEPPLVEIKKDHYVACH 323
+ E P + EI H+VACH
Sbjct: 367 EKEYPVMKEISPGHWVACH 385
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 276 bits (698), Expect = 3e-73
Identities = 142/317 (44%), Positives = 210/317 (65%), Gaps = 5/317 (1%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
+LKK++PV+ G+F + L V A+DG+S N+ +G+T + GESGCGKST GRLL + PT
Sbjct: 17 DLKKHYPVKKGMFAPERL-VKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPT 75
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G +Y+ G D+ K D + R+++ IVFQ+P SLNPR + L+ PL I+ + S+
Sbjct: 76 GGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-SLSK 134
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
E++ +K + ++ VGL EH RYPH SGGQ QR++IAR ++ +PD V+ DEP SALD+
Sbjct: 135 EQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDV 194
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
SV+AQ+LNL+++LQ++ L+Y+FISHD+SV+++++D + +MYLG+ VE + D
Sbjct: 195 SVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNP- 253
Query: 251 YHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPP 310
HPYT LL +TP L+P R R + L+GE+PSP+N PPGC F+ RC C +P
Sbjct: 254 RHPYTQALLSATPRLNPDDRRER-IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQ 312
Query: 311 LVEIKKDHYVACHYPDK 327
L + VAC D+
Sbjct: 313 LKDY-GGQLVACFAVDQ 328
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 275 bits (696), Expect = 5e-73
Identities = 138/301 (45%), Positives = 204/301 (66%), Gaps = 4/301 (1%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
+LKK++PV+ G+F + L V A+DG+S N+ +G+T + GESGCGKST GRLL + PT
Sbjct: 17 DLKKHYPVKKGMFAPERL-VKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPT 75
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G +Y+ G D+ K D + R+++ IVFQ+P SLNPR + L+ PL I+ + S+
Sbjct: 76 GGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-SLSK 134
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
E++ +K + ++ VGL EH RYPH SGGQ QR++IAR ++ +PD V+ DEP SALD+
Sbjct: 135 EQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDV 194
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
SV+AQ+LNL+++LQ++ L+Y+FISHD+SV+++++D + +MYLG+ VE + D
Sbjct: 195 SVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNP- 253
Query: 251 YHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPP 310
HPYT LL +TP L+P R R + L+GE+PSP+N PPGC F+ RC C +P
Sbjct: 254 RHPYTQALLSATPRLNPDDRRER-IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQ 312
Query: 311 L 311
L
Sbjct: 313 L 313
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 275 bits (696), Expect = 5e-73
Identities = 139/294 (47%), Positives = 194/294 (65%), Gaps = 5/294 (1%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+ LKK++P+ G+ + + V AVDG+S +R GET G+ GESGCGKST +LRL +P
Sbjct: 20 DGLKKHYPITEGVLRTEVGRVRAVDGVSFEVRAGETLGIVGESGCGKSTVAESVLRLTDP 79
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
T GS+YFDG D+T D +++ RR ++FQ+P SS +PRMT +++ PL+IH +
Sbjct: 80 TAGSVYFDGEDVTAYDDTALKRFRREAQMIFQNPDSSFDPRMTTGESVAEPLKIHGVGP- 138
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
+ + ++LE VG+ E +RYPHELSGGQ QRV++ARA++ NP +V DEP SALD
Sbjct: 139 RSRRLEIARDLLERVGMSGEDAARYPHELSGGQKQRVALARALVVNPRLIVADEPVSALD 198
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD-FRKG 248
+SVQA++L LL ++Q +FNL LFISHD+ V++ + DR+ +MYLG++VE+ +D F
Sbjct: 199 VSVQAEVLTLLNDIQAEFNLGVLFISHDMGVVREVCDRVAVMYLGEIVEMGRTEDVFNDP 258
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQ 302
E HPYT LL S P + R L GEVP P + P GC FH RCP V Q
Sbjct: 259 E--HPYTRALLRSIPTVGVESR-GTDAGLRGEVPPPSDPPTGCNFHTRCPEVIQ 309
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 272 bits (687), Expect = 6e-72
Identities = 136/293 (46%), Positives = 201/293 (68%), Gaps = 17/293 (5%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +N+K++F V GG+ K AV+ IS +I +GETFGL GESGCGKST GR ++RL
Sbjct: 9 IEVKNVKQHFDVSGGVVK-------AVNDISFDIYRGETFGLVGESGCGKSTTGRTIIRL 61
Query: 67 IEPTEGSIYFDGIDIT-KLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
+ T G + FDG ++ K + E++K R+M ++FQDP +SLNPRMT+ D + ++IH
Sbjct: 62 YDATAGEVLFDGENVHGKKSRAELKKFNRKMQMIFQDPYASLNPRMTVGDIIAEGIDIHG 121
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
LA+S++E+ D++ E+L VGL +EH +R+PHE SGGQ QR+ IARA+ P+F++ DEP
Sbjct: 122 LAKSKKERMDRVHELLNTVGLNKEHANRFPHEFSGGQRQRIGIARALAVEPEFIIADEPI 181
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
SALD+S+QAQ++NLL LQ++ LTYLFI+HD+S+++Y+SDRIG+MY G++VE+ + ++
Sbjct: 182 SALDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYRGQIVELTTSEEL 241
Query: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTG--------EVPSPINVPPG 290
+ HPYT LL + P P +RK I+ EVP+ + PG
Sbjct: 242 YANPV-HPYTKSLLSAIPLPDPDYERNRKRIVYDPSQHDYGREVPTMREIRPG 293
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 270 bits (682), Expect = 2e-71
Identities = 152/336 (45%), Positives = 216/336 (64%), Gaps = 18/336 (5%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
+LKK++ GG F V AVDG++ I++GET GL GESG GK+T GR L++L T
Sbjct: 24 DLKKHYG-DGGRFSGPP--VKAVDGVNFEIQEGETLGLVGESGSGKTTLGRTLIQLETAT 80
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
EG++ FDG DITKL ++++ R+ IVFQDP SSLN RMTI + ++ PL+ H S
Sbjct: 81 EGTVSFDGRDITKLTGSDLKQWRKNAQIVFQDPDSSLNDRMTIGEIVREPLDAHDW-NSP 139
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
E+ D++ E+L +VGL +H RYPH+ SGGQ QR+ IARA+ P+F+VLDEP SALD
Sbjct: 140 AERRDRVKELLSSVGLQADHYYRYPHQFSGGQRQRIGIARALALEPEFMVLDEPVSALDA 199
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
SVQA+ILNLL +LQ +F LTYLFI+HD+SV++++ DR+ +MYLGK++EI ++ +
Sbjct: 200 SVQAKILNLLEDLQDEFGLTYLFIAHDLSVVRHICDRVAVMYLGKIMEIGETEEL-YADA 258
Query: 251 YHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPP 310
+PYT LL + P P+ +R + L G PSP N P GC+F RCP K
Sbjct: 259 KNPYTRSLLSAIPRPDPTIDRNR-ITLPGAPPSPRNPPAGCQFSTRCP-----AKIRPEA 312
Query: 311 LVEIKKDHYVACH-----YPDKTREELGPLVREKLK 341
+I D + ++TR+++G VR+++K
Sbjct: 313 YADIDDDTWSRIEQFREVVRERTRDQMG--VRDRVK 346
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 267 bits (676), Expect = 1e-70
Identities = 141/320 (44%), Positives = 207/320 (64%), Gaps = 11/320 (3%)
Query: 12 LKKYFPVRGGLFKQ----KNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLI 67
LK ++PV L K+ + V AVDG+ + IR+GE + GESGCGK+T G+ ++ +
Sbjct: 19 LKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIE 78
Query: 68 EPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLA 127
EP++G+IY+ G +T R+LRR++ +VFQDP SL+P M + D + PL IH LA
Sbjct: 79 EPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLA 138
Query: 128 ESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
EE + + VE+LE VGL G E R PH+LSGGQ QRV+IAR ++ P+ +V DEP
Sbjct: 139 RGEEARR-RAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPV 197
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
S +D+S++A IL+L+++ R+ T + I+HDI+V + ++DRI +MYLGK+VE+
Sbjct: 198 SMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSV 257
Query: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
+ HPYTA L+ STP++ S+R + ++GEVPS + +PPGCRFH RCP + C+
Sbjct: 258 IENP-RHPYTAALVTSTPSI--SRRRPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCR 314
Query: 306 DEEPPLVEIKKDHYVACHYP 325
EP LVE + ACH+P
Sbjct: 315 SREPALVE-EGGRLYACHHP 333
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 266 bits (674), Expect = 2e-70
Identities = 140/295 (47%), Positives = 188/295 (63%), Gaps = 9/295 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
V AVDG+S++++ GET GL GESG GKST GR +L L EP G+I+FDG
Sbjct: 34 VRAVDGVSLSVQAGETLGLVGESGSGKSTIGRAILGLNEPLSGTIHFDG-----RPTHSR 88
Query: 90 RKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEE 149
R LRRRM +VFQDP SSLNPR+ I D + L H + ++ + + +L VGL
Sbjct: 89 RDLRRRMQMVFQDPYSSLNPRLKIGDAIGEVLRFHSIVPKQDVDRE-VRRLLSLVGLSAA 147
Query: 150 HLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNL 209
R P E+SGGQ QR IARA+ PDF+VLDEP +ALD+S+QAQILNLL +L+++ L
Sbjct: 148 MAERRPREMSGGQRQRAGIARALALRPDFLVLDEPVAALDVSIQAQILNLLTDLRQELGL 207
Query: 210 TYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSK 269
T LFI+H + V+++MSDRI ++YLGK++E+ + HPYT LL + P ++ K
Sbjct: 208 TMLFIAHGLGVVRHMSDRIAVLYLGKIMEVGPAHAVFESS-RHPYTKALLSAVPEINLVK 266
Query: 270 RTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHY 324
R R + G+VPSP+NVP GCRF RCP CK +PP V + DH+ CH+
Sbjct: 267 R-QRPPVTQGDVPSPLNVPSGCRFRTRCPVAQDICK-TQPPEVPVGPDHFSRCHF 319
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 265 bits (669), Expect = 8e-70
Identities = 146/318 (45%), Positives = 209/318 (64%), Gaps = 23/318 (7%)
Query: 11 NLKKYFPVRG-----GLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
N+ KY+ + L ++ +YV A+D +S+ IRKGE G+ GESG GK+T G++L
Sbjct: 11 NINKYYLAKKRGILESLAREPPIYVRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLAT 70
Query: 66 LIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
L +PT G++ F G+++ + + +RK + +VFQ+P +S+NPRM + D ++ ++
Sbjct: 71 LEKPTGGNLIFMGMEVNDRNINHVRK---HIHMVFQNPMTSINPRMKVKDIVREAMK--- 124
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLS-RYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
E++ +++ ++LE VGL ++ +YP ELSGGQ QRV+IARA+ PDF++LDEP
Sbjct: 125 -----EKREERVKKLLEEVGLDYNYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEP 179
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
TSALD SVQAQILNLLV+LQ++ LTYLFI+H+I+V +Y+SDR+ IMY GK+VE + +
Sbjct: 180 TSALDASVQAQILNLLVDLQKERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKE 239
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
E HPYT LL S P L + +GEVPS IN P GCRF+ RCPF C
Sbjct: 240 V-ISEPMHPYTQSLLSSVPELGKKELKPP----SGEVPSLINPPSGCRFNPRCPFAMSVC 294
Query: 305 KDEEPPLVEIKKDHYVAC 322
K++EPPLVEI VAC
Sbjct: 295 KEKEPPLVEI-NGRKVAC 311
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 263 bits (666), Expect = 2e-69
Identities = 145/325 (44%), Positives = 200/325 (60%), Gaps = 17/325 (5%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
K + +NLK Y+ G K AVD ++ ++ KGE GLAGESGCGKS+ G L
Sbjct: 3 KKILEVKNLKMYYFTSRGPVK-------AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
Query: 64 LRLIEP----TEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTL 117
+ + +P GSI DG +I L +D +RK R ++ ++FQ ++LNP T+ +
Sbjct: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQM 115
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPD 177
PL HR S E+ D+ ++ LE VGL E + RYPHELSGG QRV IA A+I PD
Sbjct: 116 IEPLIYHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
Query: 178 FVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
V+ DEPT+ALD+ VQAQI+NL+ L++K L+ +FI+HD+S+L +SD+I IMY GK+V
Sbjct: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
Query: 238 EILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRC 297
EI + E HPYT LL + P LH + + + G P+ +N P GCRFH RC
Sbjct: 235 EIGPSEKVYY-EPAHPYTQKLLAAIPRLH--EDVEKLEFIPGSPPNLLNPPSGCRFHPRC 291
Query: 298 PFVTQKCKDEEPPLVEIKKDHYVAC 322
P+ +CK+EEP +VE+ KDHY AC
Sbjct: 292 PYAMDRCKEEEPKMVEVDKDHYAAC 316
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 261 bits (659), Expect = 1e-68
Identities = 126/302 (41%), Positives = 200/302 (65%), Gaps = 3/302 (0%)
Query: 26 KNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLD 85
K + + AVDG+++ + +GET G+ GESGCGKSTF R ++ L++ T G + + G D+T++
Sbjct: 36 KPVTLKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLTRMQ 95
Query: 86 KDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
+ + R R+++ ++FQDP +SLNPRMT+ D + PL+ S++E D++ E++ VG
Sbjct: 96 EVKRRATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVG 155
Query: 146 LGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQR 205
L ++RYPHE SGGQ QR+ IARA+I P ++ DEP SALD+S+QAQ++NLL LQ+
Sbjct: 156 LLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQK 215
Query: 206 KFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPAL 265
+ L+ +FI+HD+SV++++SDR+ +MYLG VE L + HPYT L+ + P
Sbjct: 216 ELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVE-LGVSKELFANPKHPYTKALMSAVPIP 274
Query: 266 HPSKRTSRKV-ILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHY 324
P+ ++ + +L G++PSP+N P GC F RCP T +C + P+++ H V+C Y
Sbjct: 275 DPNIERNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAECA-KTKPVIKGSDIHSVSCLY 333
Query: 325 PD 326
+
Sbjct: 334 AE 335
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 260 bits (657), Expect = 2e-68
Identities = 142/325 (43%), Positives = 199/325 (60%), Gaps = 17/325 (5%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
K + +NLK Y+ G K AVD ++ ++ KGE GLAGESGCGKS+ G L
Sbjct: 6 KKILEVKNLKMYYFTSRGPVK-------AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 58
Query: 64 LRLIEP----TEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTL 117
+ + +P GSI DG +I L +D +R+ R ++ ++FQ ++LNP T+ +
Sbjct: 59 MGMPQPPGRIVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVGYQM 118
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPD 177
PL H+ E+ D+ ++ LE VGL E + RYPHELSGG QRV IA A++ PD
Sbjct: 119 IEPLIYHK-GMDREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIAMALLLEPD 177
Query: 178 FVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
V+ DEPT+ALD+ VQAQI+NL+ L++K L+ +FI+HD+S+L +SDR+ +MY GK+V
Sbjct: 178 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLV 237
Query: 238 EILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRC 297
EI + E HPYT LL + P LH + + + G P+ IN P GCRFH RC
Sbjct: 238 EIGPSEKIYY-EPAHPYTQKLLAAIPRLH--EDVEKLEFIPGSPPNLINPPSGCRFHPRC 294
Query: 298 PFVTQKCKDEEPPLVEIKKDHYVAC 322
P+ KCK+EEP +VE+ KDHY AC
Sbjct: 295 PYAMDKCKEEEPKMVEVDKDHYAAC 319
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 260 bits (657), Expect = 2e-68
Identities = 141/331 (42%), Positives = 211/331 (63%), Gaps = 19/331 (5%)
Query: 2 KMKDFIVTENLKKYFPV-RGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
K + + ENL + F LF + V+AV+ +S + K +T GL GESGCGKST
Sbjct: 4 KKEIILKVENLMQTFTTGEDFLFWKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKSTTL 63
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
R +++L PT G+IYF+G +ITKL K E+ K ++ M +VFQDP +SL+PRMTI + + P
Sbjct: 64 RSIMQLYTPTSGNIYFNGKNITKLSKKELLKTKKDMQMVFQDPHTSLDPRMTIKEIIAEP 123
Query: 121 LEIHR----LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNP 176
LEI+ L ++++E ++ E+ + VGL + L+RYPHE SGGQ QR+ IARA+ NP
Sbjct: 124 LEIYNENKILPKTKQEIEQRVNELTDIVGLHKSMLTRYPHEFSGGQRQRIGIARALALNP 183
Query: 177 DFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKV 236
++LDE SALD+S++AQILNLL LQ++FNL+YLFISHD++V++YMSD+I +MYLG +
Sbjct: 184 KLLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVKYMSDKIAVMYLGVI 243
Query: 237 VEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVR 296
+E+ + I HPYT L+ S P ++P KR ++ + L + + I + H+
Sbjct: 244 LELAPRETLFSNPI-HPYTKMLIASIPEINPEKRKNKNIKLDEQTLANIR-----KIHL- 296
Query: 297 CPFVTQKCKDEEPPLVEIKKDHYVACHYPDK 327
P L E++KDH+V+ + D+
Sbjct: 297 -------STQVHPKLEEVEKDHFVSKYLFDE 320
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 259 bits (656), Expect = 3e-68
Identities = 125/265 (47%), Positives = 188/265 (70%), Gaps = 9/265 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
++LK++F G K AVD +S +I KGET GL GESGCGKST GR ++RL E
Sbjct: 12 KHLKQHFVTPRGTVK-------AVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 64
Query: 70 TEGSIYFDGIDIT-KLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
T+G + F+G ++ + + ++ + R+M ++FQDP +SLNPRMT+ D + L+IH+LA+
Sbjct: 65 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 124
Query: 129 SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
+++E+ ++ E+LE VGL +EH +RYPHE SGGQ QR+ IARA+ +P+F++ DEP SAL
Sbjct: 125 TKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISAL 184
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D+S+QAQ++NL+ LQ++ LTYLFI+HD+S+++Y+SDRIG+MY GK+VE+ D+ +
Sbjct: 185 DVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYEN 244
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSR 273
+ HPYT LL + P P +R
Sbjct: 245 PL-HPYTKSLLSAIPLPDPDYERNR 268
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 259 bits (656), Expect = 3e-68
Identities = 130/315 (41%), Positives = 204/315 (64%), Gaps = 5/315 (1%)
Query: 11 NLKKYFPVRGGL--FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE 68
+LK +F ++ G F Q + AVDG+++ + +GET G+ GESGCGKSTF R ++ L++
Sbjct: 16 DLKVHFDIKEGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK 75
Query: 69 PTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
T+G + + G D+ + DE R++R + ++FQDP +SLNPRMTI + + PL +
Sbjct: 76 ATDGKVAWLGKDLLGMKADEWREVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKL 135
Query: 129 SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
S ++ D++ ++ VGL ++RYPHE SGGQ QR+ IARA+I P ++ D+ SAL
Sbjct: 136 SRQDVRDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDDAVSAL 195
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D+S+QAQ++NLL LQR+ L+ +FI+HD++V++++SDR+ +MYLG VE+ + D+
Sbjct: 196 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 255
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSRKV-ILTGEVPSPINVPPGCRFHVRCPFVTQKCKDE 307
+ HPYT L+ + P P ++K+ +L GE+PSPIN P GC F RCP +C +
Sbjct: 256 PL-HPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSGCVFRTRCPIAGPECA-Q 313
Query: 308 EPPLVEIKKDHYVAC 322
P++E H V+C
Sbjct: 314 TRPVLEGSFRHAVSC 328
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 259 bits (656), Expect = 3e-68
Identities = 125/265 (47%), Positives = 188/265 (70%), Gaps = 9/265 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
++LK++F G K AVD +S +I KGET GL GESGCGKST GR ++RL E
Sbjct: 9 KHLKQHFVTPRGTVK-------AVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 61
Query: 70 TEGSIYFDGIDIT-KLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
T+G + F+G ++ + + ++ + R+M ++FQDP +SLNPRMT+ D + L+IH+LA+
Sbjct: 62 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 121
Query: 129 SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
+++E+ ++ E+LE VGL +EH +RYPHE SGGQ QR+ IARA+ +P+F++ DEP SAL
Sbjct: 122 TKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISAL 181
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D+S+QAQ++NL+ LQ++ LTYLFI+HD+S+++Y+SDRIG+MY GK+VE+ D+ +
Sbjct: 182 DVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYEN 241
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSR 273
+ HPYT LL + P P +R
Sbjct: 242 PL-HPYTKSLLSAIPLPDPDYERNR 265
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 259 bits (656), Expect = 3e-68
Identities = 125/265 (47%), Positives = 188/265 (70%), Gaps = 9/265 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
++LK++F G K AVD +S +I KGET GL GESGCGKST GR ++RL E
Sbjct: 12 KHLKQHFVTPRGTVK-------AVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 64
Query: 70 TEGSIYFDGIDIT-KLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
T+G + F+G ++ + + ++ + R+M ++FQDP +SLNPRMT+ D + L+IH+LA+
Sbjct: 65 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 124
Query: 129 SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
+++E+ ++ E+LE VGL +EH +RYPHE SGGQ QR+ IARA+ +P+F++ DEP SAL
Sbjct: 125 TKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISAL 184
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D+S+QAQ++NL+ LQ++ LTYLFI+HD+S+++Y+SDRIG+MY GK+VE+ D+ +
Sbjct: 185 DVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYEN 244
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSR 273
+ HPYT LL + P P +R
Sbjct: 245 PL-HPYTKSLLSAIPLPDPDYERNR 268
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 259 bits (654), Expect = 4e-68
Identities = 130/315 (41%), Positives = 203/315 (64%), Gaps = 5/315 (1%)
Query: 11 NLKKYFPVRGGL--FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE 68
+LK +F ++ G F Q + AVDG+++ + +GET G+ GESGCGKSTF R ++ L++
Sbjct: 16 DLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK 75
Query: 69 PTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
T+G + + G ++ + DE R +R + ++FQDP +SLNPRMTI + + PL +
Sbjct: 76 ATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKM 135
Query: 129 SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
S +E +++ ++ VGL ++RYPHE SGGQ QR+ IARA+I P ++ DEP SAL
Sbjct: 136 SRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 195
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D+S+QAQ++NLL LQR+ L+ +FI+HD++V++++SDR+ +MYLG VE+ + D+
Sbjct: 196 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 255
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSRKV-ILTGEVPSPINVPPGCRFHVRCPFVTQKCKDE 307
+ HPYT L+ + P P ++ + +L GE+PSPIN P GC F RCP +C +
Sbjct: 256 PL-HPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECA-K 313
Query: 308 EPPLVEIKKDHYVAC 322
P++E H V+C
Sbjct: 314 TRPVLEGSFRHSVSC 328
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 258 bits (652), Expect = 7e-68
Identities = 143/328 (43%), Positives = 209/328 (63%), Gaps = 26/328 (7%)
Query: 3 MKDFIVTENLKKYFPVR-----GGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKS 57
M + +N+KKY+ + L K +YV A+D +SI+I G G+ GESG GKS
Sbjct: 1 MSEIYSLKNVKKYYLAQKRGLIDALVKVPKIYVRALDDVSISIMDGNVIGVVGESGSGKS 60
Query: 58 TFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTL 117
T G++++ L PT+G +YF G T++ K E K+R+++ +VFQ+P +SLNP+M + D +
Sbjct: 61 TMGKVMVTLETPTDGELYFKG---TRVTKSEYPKIRKQVDMVFQNPATSLNPKMKVKDIV 117
Query: 118 KRPLEIHRLAESEEEKYDK--IVEILEAVGLG-EEHLSRYPHELSGGQLQRVSIARAIIT 174
PL +D+ I E++ VGL +E + ELSGGQ+QRV+IARA++
Sbjct: 118 SEPLG----------HFDEGAIKEVILKVGLSYDEVKDKQSRELSGGQVQRVAIARALMK 167
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
P+ +VLDEPTSALD S+QAQ+LNLLV+LQ ++ +TY+FI+H+I V +Y+SD I ++Y G
Sbjct: 168 KPELLVLDEPTSALDESIQAQVLNLLVDLQTEYKMTYIFITHNILVAKYISDYIVVLYAG 227
Query: 235 KVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFH 294
K+VE + + HPYT LL S P + K V G+VPS IN+P GCRF+
Sbjct: 228 KIVEYGPTSEVLSKPL-HPYTQLLLSSVPTV-DVKDVKPPV---GDVPSLINLPQGCRFN 282
Query: 295 VRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
RCPFV +KC+ EEPPL+ +++ VAC
Sbjct: 283 PRCPFVMEKCRKEEPPLISQGQNYQVAC 310
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 253 bits (639), Expect = 3e-66
Identities = 145/350 (41%), Positives = 209/350 (59%), Gaps = 39/350 (11%)
Query: 10 ENLKKYFPVRGGLFK----QKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
E+L+ +FP+R + + + +V AVDG+S +I +GE F L GESGCGK+T G+ +LR
Sbjct: 23 EDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILR 82
Query: 66 LIEPTEGSIYF-------------------DG-IDITKLDKDEMRKLRRRMGIVFQDPKS 105
L++ T G ++F DG +D+ + + + + LRR + IV+QDP
Sbjct: 83 LVKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYG 142
Query: 106 SLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQL 163
SLNPR TI L+ PL IH + + E + + + +LEAV L + + RYPH+LSGGQ
Sbjct: 143 SLNPRFTIKRILEDPLLIHSIGNARERE-EMVARMLEAVKLTPASDFMDRYPHQLSGGQR 201
Query: 164 QRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQY 223
QRV+IARA I NP VV DEP S LD+S++A+IL LL+ + K + LFI+HD++V +Y
Sbjct: 202 QRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARY 261
Query: 224 MSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTS-RKVILTGEVP 282
+ DRI +MYLGK+VE + I HPYT L+ + P PS R R+V + GE+P
Sbjct: 262 ICDRIAVMYLGKIVETGDARRIIERPI-HPYTKALVAAIPEPDPSNRKKLREVPIKGEIP 320
Query: 283 SPINVPPGCRFHVRC-------PFVTQKCKDEEPPL---VEIKKDHYVAC 322
S +PPGCRFH RC + + C +EPPL E ++D V+C
Sbjct: 321 SAAAIPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSC 370
>dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 308
Score = 250 bits (632), Expect = 2e-65
Identities = 126/266 (47%), Positives = 179/266 (66%), Gaps = 4/266 (1%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
F+ E+LK +FP++GG+ Y AVDG+S+ + +G+T+GL GESG GK+T GR ++
Sbjct: 3 FLKVEDLKVHFPIKGGVIPHTVGYNKAVDGVSLELEEGQTYGLVGESGSGKTTTGRAIIG 62
Query: 66 LIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE-IH 124
L + T G I FDG DITK K + +RR + ++FQDP SSLNP+ + D + PL
Sbjct: 63 LNKLTAGHILFDGQDITKQLKKKKNDIRRNIQMIFQDPYSSLNPKKRVLDIIAEPLRNFE 122
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+L++ EE K ++ E+LE VGL E + +YPHE SGGQ QR+ IARAI P ++ DEP
Sbjct: 123 KLSKLEERK--RVEELLEIVGLSRESIFKYPHEFSGGQRQRIGIARAIALKPKLIIADEP 180
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
SALD+SVQAQ+LN + ++Q++FNLTYLFISHD+ ++++M DRIGIMY G++VE DD
Sbjct: 181 VSALDVSVQAQVLNFMKDIQKEFNLTYLFISHDLGIIRHMCDRIGIMYRGRLVEEGVRDD 240
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKR 270
+ H YT L+ + P + P R
Sbjct: 241 IYESP-QHIYTKRLIAAIPDMDPKNR 265
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 249 bits (630), Expect = 3e-65
Identities = 124/302 (41%), Positives = 189/302 (62%), Gaps = 2/302 (0%)
Query: 22 LFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDI 81
LF K + AV +S + GET G+ GESGCGKST R ++ L+E +EG I + G +
Sbjct: 28 LFFAKPQTLKAVKDVSFKLYAGETLGVVGESGCGKSTLARAIIGLVEASEGEILWLGKHL 87
Query: 82 TKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEIL 141
K + ++ R+ + ++FQDP +SLNPRM I + + PL+I++ S E +K+ ++
Sbjct: 88 RKQSAKQWKETRKDIQMIFQDPLASLNPRMNIGEIIAEPLKIYQPHLSAAEVKEKVQAMM 147
Query: 142 EAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLV 201
VGL ++RYPHE SGGQ QR+ IARA+I P ++ DEP SALD+S+QAQ++NLL
Sbjct: 148 LKVGLLPNLINRYPHEFSGGQCQRIGIARALIIEPKMIICDEPVSALDVSIQAQVVNLLK 207
Query: 202 NLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLS 261
+LQ++ L+ +FI+HD++V++++SDR+ +MYLG +E L D + HPYT L+ +
Sbjct: 208 SLQKEMGLSLIFIAHDLAVVKHISDRVLVMYLGNAME-LGSDVEVYNDTKHPYTKALMSA 266
Query: 262 TPALHPSKRTSRKV-ILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYV 320
P P ++ + +L G++PSPIN P GC F RC + C ++PP H+V
Sbjct: 267 VPIPDPKLERNKSIELLEGDLPSPINPPSGCVFRTRCLKADENCAKQKPPFTSQNNSHFV 326
Query: 321 AC 322
AC
Sbjct: 327 AC 328
>pir||C72720 probable oligopeptide transport ATP-binding protein oppF APE0300 -
Aeropyrum pernix (strain K1) >gi|5103939|dbj|BAA79255.1|
(AP000059) 420aa long hypothetical oligopeptide
transport ATP-binding protein oppF [Aeropyrum pernix]
Length = 420
Score = 247 bits (624), Expect = 1e-64
Identities = 132/332 (39%), Positives = 194/332 (57%), Gaps = 36/332 (10%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ +++ YFP+ K+ YV AVDG+S++++KGE G+ GESG GK+T + ++ L
Sbjct: 5 LALHDVRVYFPITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGL 64
Query: 67 IEPTEGSIYFD------------------GIDITK-----------------LDKDEMRK 91
P G ++ D G ++ + +D+ +K
Sbjct: 65 HRPFTGHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKK 124
Query: 92 LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHL 151
RR++ +V QDP SSLNPRM + + + P+ +H + +S E +++E+LEAVGLG+E
Sbjct: 125 FRRKVQMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFA 184
Query: 152 SRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTY 211
RYP+ELSGGQ QRV+IARA+ NP +VLDEPTSALD+S+QAQIL LL L +K+ LTY
Sbjct: 185 DRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTY 244
Query: 212 LFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRT 271
L I+HDISV++YMS + +MY GK++E + HPYT LL + P P R
Sbjct: 245 LLITHDISVVRYMSSSVVVMYSGKIMESAPKHILFTNPL-HPYTKLLLSAVPIPDPRSRR 303
Query: 272 SRKVILTGEVPSPINVPPGCRFHVRCPFVTQK 303
++ GE P+P P GCRF RCP +++
Sbjct: 304 IKEFKDIGEPPNPAKPPVGCRFVTRCPIASRE 335
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 245 bits (620), Expect = 4e-64
Identities = 138/347 (39%), Positives = 204/347 (58%), Gaps = 26/347 (7%)
Query: 1 MKMKDFIVTENLKKYFPVRGG----LFKQKNLYVHAVDGISINIRKGETFGLAGESGCGK 56
++ + ++L KYF ++ LF+++ +V AVD I+ IRKGE G+ GESG GK
Sbjct: 344 IQQSSMVEVKDLVKYFEIKESISKALFEREKRFVRAVDDITFAIRKGEILGIVGESGSGK 403
Query: 57 STFGRLLLRLIEPTEGSIYFD------GIDITKLDKDEMRK-LRRRMGIVFQDPKSSLNP 109
+T G+ LL L PT G I + I T + + MR +R+ ++FQDP SLNP
Sbjct: 404 TTLGKTLLGLYSPTAGKITYSFSNGDVEITPTTSESELMRSSIRKETQMIFQDPYDSLNP 463
Query: 110 RMTIYDTLKRPLEIHRLAESEEEK---YDKIVEILEAVGLG---------EEHLSRYPHE 157
++T+YD + P+ R + +EK Y +EIL V + E +L RYPHE
Sbjct: 464 KLTVYDIVAEPIIARRYHKGNKEKDDIYKNPLEILNLVKIALAKASLKPVENYLFRYPHE 523
Query: 158 LSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHD 217
LSGG+ QRV+ ARA++ N +F++ DEPTS LD+S++A +N++ ++ K +T ++ISHD
Sbjct: 524 LSGGERQRVATARALVLNSEFIIADEPTSMLDVSIRASFMNMMKEIRSKEGITMVYISHD 583
Query: 218 ISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVIL 277
I+ YMSD+I +MYLGK VE+ S D E HPYT L+ + P S K+ +
Sbjct: 584 IASTYYMSDKILVMYLGKAVEMGSADAI-INEPLHPYTKALIKAIPTPF-SDWDPSKIDI 641
Query: 278 TGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHY 324
GE+ + INVP GCRF+ RC + CKD PP V+ +DH+ CH+
Sbjct: 642 IGEIGNAINVPKGCRFYNRCIYRQDICKD-NPPTVKGAEDHWYLCHF 687
Score = 184 bits (463), Expect = 1e-45
Identities = 110/331 (33%), Positives = 176/331 (52%), Gaps = 31/331 (9%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT---EGSIYFDGI 79
FK + VHA+ +S ++++G G+ GESG GKST ++ L+ GSIY G
Sbjct: 8 FKTYSGIVHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRGSIYLKGT 67
Query: 80 DIT--------------KLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
+ K+ +D +R +R + + +VFQ +S NP TI + +IH
Sbjct: 68 EYISDVIINNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRRQMFEVFKIH 127
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+++E + K+ E L GL L YPHELSGG QR IA A+ +PD V+ DEP
Sbjct: 128 TTLDNDEIE-KKVEEALRMAGLNISVLDMYPHELSGGMKQRAVIAMALSLDPDIVIADEP 186
Query: 185 TSALDISVQAQILNLLVNLQRKFNL-TYLFISHDISVLQYMSDRIGIMYLGKVVEILSID 243
T+ LD+ QA+I++ L L+ + + + ISHD+ V+ ++D + ++Y GKV E
Sbjct: 187 TTGLDVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGKVFEY---- 242
Query: 244 DFRKGEIY----HPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPF 299
K I+ +PYT L+ S P++ +KR + G +P P+ + GC+F RC
Sbjct: 243 -GEKSRIFQNTANPYTYKLIGSYPSIRNAKRYVEGI--PGSLPDPMKIGKGCKFADRCYM 299
Query: 300 VTQKCKDEEPPLVEIKKDHYVACHYPDKTRE 330
C++EEP L++++ +HY AC Y D ++
Sbjct: 300 ARDVCREEEPELIKVEDNHYSACFYWDSIKK 330
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 242 bits (612), Expect = 4e-63
Identities = 126/277 (45%), Positives = 181/277 (64%), Gaps = 2/277 (0%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL FP+R GL + VHAV+ +S ++ GET L GESG GKST GR LLRL+E
Sbjct: 354 NLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ 413
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G I F+G I L +++ LRR + +FQDP +SL+PR TI D++ PL +H L +
Sbjct: 414 GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGK 473
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
+ ++ +LE VGL EH RYPHE SGGQ QR+ IARA+ NP ++ DE SALD+
Sbjct: 474 DAAA-RVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 532
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
S++ QI+NLL++LQR F + YLFISHD++V++ +S R+ +MYLG++VEI +
Sbjct: 533 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENP- 591
Query: 251 YHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINV 287
HPYT LL + P PS++ ++V+L+ ++PS I++
Sbjct: 592 QHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHL 628
Score = 163 bits (409), Expect = 2e-39
Identities = 95/260 (36%), Positives = 152/260 (57%), Gaps = 15/260 (5%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDG---- 78
F Q + AV +S ++++GET + GESG GKS L+RL+E G + D
Sbjct: 58 FMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQ 117
Query: 79 ------IDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
I++++ + +MR +R M ++FQ+P +SLNP T+ + + + +H+ A S E
Sbjct: 118 RRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNA-SRE 176
Query: 132 EKYDKIVEILEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
E + +L+ V + E LSRYPH+LSGG QRV IA A+ P ++ DEPT+ALD
Sbjct: 177 EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 236
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+++QAQIL L+ LQ++ ++ +FI+HD+ V+ ++DR+ +MY G+ VE +++
Sbjct: 237 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAP 296
Query: 250 IYHPYTAYLLLSTPALHPSK 269
HPYT LL + P L K
Sbjct: 297 -QHPYTRALLAAVPQLGAMK 315
>pir||E64820 probable oligopeptide transport protein - Escherichia coli
>gi|1787051|gb|AAC73916.1| (AE000185) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 612
Score = 242 bits (612), Expect = 4e-63
Identities = 126/277 (45%), Positives = 181/277 (64%), Gaps = 2/277 (0%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL FP+R GL + VHAV+ +S ++ GET L GESG GKST GR LLRL+E
Sbjct: 307 NLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ 366
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G I F+G I L +++ LRR + +FQDP +SL+PR TI D++ PL +H L +
Sbjct: 367 GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGK 426
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
+ ++ +LE VGL EH RYPHE SGGQ QR+ IARA+ NP ++ DE SALD+
Sbjct: 427 DAAA-RVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 485
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
S++ QI+NLL++LQR F + YLFISHD++V++ +S R+ +MYLG++VEI +
Sbjct: 486 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENP- 544
Query: 251 YHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINV 287
HPYT LL + P PS++ ++V+L+ ++PS I++
Sbjct: 545 QHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHL 581
Score = 163 bits (409), Expect = 2e-39
Identities = 95/260 (36%), Positives = 152/260 (57%), Gaps = 15/260 (5%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDG---- 78
F Q + AV +S ++++GET + GESG GKS L+RL+E G + D
Sbjct: 11 FMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQ 70
Query: 79 ------IDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
I++++ + +MR +R M ++FQ+P +SLNP T+ + + + +H+ A S E
Sbjct: 71 RRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNA-SRE 129
Query: 132 EKYDKIVEILEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
E + +L+ V + E LSRYPH+LSGG QRV IA A+ P ++ DEPT+ALD
Sbjct: 130 EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 189
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+++QAQIL L+ LQ++ ++ +FI+HD+ V+ ++DR+ +MY G+ VE +++
Sbjct: 190 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAP 249
Query: 250 IYHPYTAYLLLSTPALHPSK 269
HPYT LL + P L K
Sbjct: 250 -QHPYTRALLAAVPQLGAMK 268
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 242 bits (612), Expect = 4e-63
Identities = 126/277 (45%), Positives = 181/277 (64%), Gaps = 2/277 (0%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL FP+R GL + VHAV+ +S ++ GET L GESG GKST GR LLRL+E
Sbjct: 324 NLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ 383
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G I F+G I L +++ LRR + +FQDP +SL+PR TI D++ PL +H L +
Sbjct: 384 GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGK 443
Query: 131 EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
+ ++ +LE VGL EH RYPHE SGGQ QR+ IARA+ NP ++ DE SALD+
Sbjct: 444 DAAA-RVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 502
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
S++ QI+NLL++LQR F + YLFISHD++V++ +S R+ +MYLG++VEI +
Sbjct: 503 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENP- 561
Query: 251 YHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINV 287
HPYT LL + P PS++ ++V+L+ ++PS I++
Sbjct: 562 QHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHL 598
Score = 163 bits (409), Expect = 2e-39
Identities = 95/260 (36%), Positives = 152/260 (57%), Gaps = 15/260 (5%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDG---- 78
F Q + AV +S ++++GET + GESG GKS L+RL+E G + D
Sbjct: 28 FMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQ 87
Query: 79 ------IDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
I++++ + +MR +R M ++FQ+P +SLNP T+ + + + +H+ A S E
Sbjct: 88 RRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNA-SRE 146
Query: 132 EKYDKIVEILEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
E + +L+ V + E LSRYPH+LSGG QRV IA A+ P ++ DEPT+ALD
Sbjct: 147 EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 206
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+++QAQIL L+ LQ++ ++ +FI+HD+ V+ ++DR+ +MY G+ VE +++
Sbjct: 207 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAP 266
Query: 250 IYHPYTAYLLLSTPALHPSK 269
HPYT LL + P L K
Sbjct: 267 -QHPYTRALLAAVPQLGAMK 285
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 242 bits (611), Expect = 5e-63
Identities = 124/267 (46%), Positives = 177/267 (65%), Gaps = 11/267 (4%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NLK+YF K V AVD IS +I KGET GL GESGCGKST GR ++RL + T
Sbjct: 13 NLKQYFN------KGTASEVRAVDDISFDIYKGETLGLVGESGCGKSTTGRTIIRLYDAT 66
Query: 71 EGSIYFDGIDI-TKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
G + ++G D+ + + EM + RR+M ++FQDP +SLNPR+ + D + + IH LA++
Sbjct: 67 GGEVIYNGKDVHARKSRKEMLEFRRKMQMIFQDPYASLNPRVKVKDIIAEGIRIHGLAKT 126
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSA-- 187
EE ++ ++LE VGL +EH RYPHE SGGQ QR+ +P+F++ DEP SA
Sbjct: 127 PEETNKQVYDLLETVGLSKEHAGRYPHEFSGGQRQRIGYRSCACCSPEFIIADEPISALD 186
Query: 188 -LDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
LD+S+QAQ++NLL LQ++ NLTYLFI+HD+S+++Y+SDRIG+MY GK+V++ +D
Sbjct: 187 FLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIGVMYFGKLVKLAFANDLY 246
Query: 247 KGEIYHPYTAYLLLSTPALHPSKRTSR 273
+ HPYT LL + P P+ +R
Sbjct: 247 HAPL-HPYTESLLSAIPLPDPNYERTR 272
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 240 bits (607), Expect = 1e-62
Identities = 129/317 (40%), Positives = 196/317 (61%), Gaps = 19/317 (5%)
Query: 22 LFKQKNLY---------VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-- 70
L K +NLY V A+DG+S +IRKGE L GE+GCGKS + ++RL+
Sbjct: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
Query: 71 -EGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
+G I + G ++ +L + EMRK+R + + ++FQDP +SLNP TI D + ++H+L
Sbjct: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
Query: 129 SEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
D+IV++L+ V + E+ + YP ELSGG QRV IA + P ++ DEPT+
Sbjct: 126 VGSI-LDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTT 184
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
ALD+++QAQI+NL++ L+ KF + L I+H+ V+ M+DR+ +MY G+VVEI +++
Sbjct: 185 ALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
Query: 247 KGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKD 306
+ HPYT LL + P H ++R + G VP+ +N P GCRFH RC + C
Sbjct: 245 DNPL-HPYTQGLLRALPRGHKTERELENI--PGRVPNLLNPPKGCRFHPRCKKAKEMCSK 301
Query: 307 EEPPLVEIKKDHYVACH 323
E+P L+E++K+HYVACH
Sbjct: 302 EKPKLIEVEKEHYVACH 318
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 238 bits (602), Expect = 5e-62
Identities = 136/328 (41%), Positives = 197/328 (59%), Gaps = 18/328 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + + NLK F G+ K AVDGIS + KGE+ G+ GESG GKS
Sbjct: 1 MMELLNVNNLKVEFHRVEGIVK-------AVDGISYKLNKGESLGIVGESGSGKSVSVLS 53
Query: 63 LLRLIEPT----EGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTL 117
LLRLI +G F G D+ KL+K+E+R +R + + I+FQ+P +SLNP + + +
Sbjct: 54 LLRLINRNGRIVDGEAIFLGKDLLKLNKEELRNIRGKDISIIFQNPMTSLNPIIRVGIQV 113
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITN 175
P+ HRL ++EE + ++ +E+LE VG+ E + YP + SGG QRV IA A+ +
Sbjct: 114 MEPIIWHRLMKNEEAR-ERAIELLERVGIPESPKRFLNYPFQFSGGMRQRVMIAMALACH 172
Query: 176 PDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGK 235
P ++ DEPT+ALD+++QAQI+ LL L+ ++ ++ +FI+HD+SV DRI MY GK
Sbjct: 173 PKLLIADEPTTALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYAGK 232
Query: 236 VVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHV 295
+VE +++ K + HPYT LL ST L R + V + G P+P P GC+FH
Sbjct: 233 IVEEAPVEEILKTPL-HPYTKGLLNST--LEIGSRGKKLVPIPGNPPNPTKHPSGCKFHP 289
Query: 296 RCPFVTQKCKDEEPPLVEIKKDHYVACH 323
RC F + C+ EEPPLV I ++H VACH
Sbjct: 290 RCSFAMEICQREEPPLVNISENHRVACH 317
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 238 bits (600), Expect = 9e-62
Identities = 130/329 (39%), Positives = 195/329 (58%), Gaps = 19/329 (5%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
ENLK YF G+ K AVDG+S +R+GET G+ GESG GKS ++RL++
Sbjct: 2 ENLKTYFYTEDGVVK-------AVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQ 54
Query: 70 T----EGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
+G I F G ++ +L ++EMRK+R + + ++FQ+P +LNP TI D + + +H
Sbjct: 55 NGKIVDGKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILH 114
Query: 125 RLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ SE+E +++L VG+ E + + YPH+LSGG QR IA A+ P ++ D
Sbjct: 115 QNV-SEKEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIAD 173
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPT+ALD+++QAQIL L+ LQ+++ + + I+HD+ V+ MSD++ +MY GKVVE +
Sbjct: 174 EPTTALDVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDV 233
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQ 302
E HPYT LL S P + + + + G VP P+N PPGC+FH RC F +
Sbjct: 234 KTIFT-EPKHPYTYALLESIPRIDVEQERLKSI--PGNVPDPLNFPPGCKFHPRCEFFEK 290
Query: 303 -KCKDEEPPLVEIKKDHYVACHYPDKTRE 330
KC EEP L ++ +H V C + K E
Sbjct: 291 GKCDVEEPELEDLDGNHKVRCFFWQKLDE 319
>sp|P77622|YDDO_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDO
>gi|7445738|pir||F64901 ABC-type transport protein b1483
- Escherichia coli >gi|1742423|dbj|BAA15138.1| (D90789)
Dipeptide transport ATP-binding protein DppF.
[Escherichia coli] >gi|1742434|dbj|BAA15148.1| (D90790)
Dipeptide transport ATP-binding protein DppF.
[Escherichia coli] >gi|1787758|gb|AAC74556.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 308
Score = 237 bits (599), Expect = 1e-61
Identities = 131/304 (43%), Positives = 185/304 (60%), Gaps = 17/304 (5%)
Query: 3 MKDFIVT-ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
M D ++T ++ FP R + +VHA++GI + IR+GET G+ GESGCGKST +
Sbjct: 1 MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQ 60
Query: 62 LLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPL 121
LL+ +++P+ G G +R M +VFQDP SSLNPR+ ++ + PL
Sbjct: 61 LLMGMLQPSHGQYIRSGS-------------QRIMQMVFQDPLSSLNPRLPVWRIITEPL 107
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
I + + SE+++ E+ VG+ E+L R PH SGGQ QR++IARA+ + PD +VL
Sbjct: 108 WIAKRS-SEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVL 166
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DEPTSALDISVQAQILNLLV LQ LTY+ ISH++SV+++MSDR+ +MYLG++VE+
Sbjct: 167 DEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGD 226
Query: 242 IDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVT 301
HPYT LL S PA+ + T ++P +P GC F+ RCP T
Sbjct: 227 AQQVLTAPA-HPYTRLLLDSLPAIDKPLEEEWALRKT-DLPGNRTLPQGCFFYERCPLAT 284
Query: 302 QKCK 305
C+
Sbjct: 285 HGCE 288
>pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654573|gb|AAF93346.1| (AE004107) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 571
Score = 237 bits (599), Expect = 1e-61
Identities = 120/255 (47%), Positives = 169/255 (66%), Gaps = 2/255 (0%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
EN+ F + LF+ + YV A + +S + +GETFGL GESG GKST R++ L +P
Sbjct: 306 ENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQP 365
Query: 70 TEGSIYFDGIDITKLDKD-EMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
G + F+GID+T L + E R LRR+M +VFQ+P +S+NPRM I+D + P+ H+L
Sbjct: 366 NAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTR 425
Query: 129 SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
SE E + ++LE VGLG+ +YPHE SGGQ QR+SIARA+ T P ++ DEPTSAL
Sbjct: 426 SESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSAL 485
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D+SVQAQILNLL +LQ + NLT LFISHD+ V++ M DR+G+M +G ++E+ +
Sbjct: 486 DVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFT- 544
Query: 249 EIYHPYTAYLLLSTP 263
+ H Y+ L+ P
Sbjct: 545 DPQHEYSKKLISLMP 559
Score = 172 bits (431), Expect = 6e-42
Identities = 97/261 (37%), Positives = 153/261 (58%), Gaps = 16/261 (6%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+NL+ +P R G+ AV ++++I++GE G+ GESG GKST G ++ L+ P
Sbjct: 7 KNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSP 59
Query: 70 ----TEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
G +Y +G I+ L MR++R ++G +FQDP +SLNP T+ L + +
Sbjct: 60 PGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHAN 119
Query: 125 RLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ S EE Y + + +++ VG+ E L +YPH+ SGG QRV IA A+ PD ++ D
Sbjct: 120 -MQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIAD 178
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPT+ALD+S+Q QILNL+ L +K N+ + ++HD+ V+ ++DR+ +MY G +VE
Sbjct: 179 EPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPT 238
Query: 243 DDFRKGEIYHPYTAYLLLSTP 263
G HPYT L+ + P
Sbjct: 239 AKV-LGTPEHPYTRSLISAVP 258
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 236 bits (597), Expect = 2e-61
Identities = 138/326 (42%), Positives = 187/326 (57%), Gaps = 19/326 (5%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
++ +V E+LK YF G+ K AVDG+S +R+GE G+AGESG GKST +
Sbjct: 3 QELLVVEDLKTYFYTLRGIVK-------AVDGVSFTLRRGEVLGIAGESGSGKSTLAWSI 55
Query: 64 LRLIEP----TEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTL 117
L L+ P G I DG+D+T + + E+R+ R ++ +VFQ + L P T+ +
Sbjct: 56 LGLVPPPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQI 115
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPD 177
+ L+IHR E ++ E+LE+VGL RYPHELSGGQ QRV IA A+ PD
Sbjct: 116 EEVLQIHR-GVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPD 174
Query: 178 FVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
V+ DEPT+ALD+ VQAQILNLL L + NL+ + I+HD+SV+ +++ + IMY GK+
Sbjct: 175 IVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIA 234
Query: 238 EILSIDD-FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVR 296
E D F K + HPYT LL + P L R + G P N PPGCRFH R
Sbjct: 235 EYGPSDAVFTKPQ--HPYTQALLKAIPKLRGP--IDRLAYIPGSPPDLRNPPPGCRFHPR 290
Query: 297 CPFVTQKCKDEEPPLVEIKKDHYVAC 322
CP +C EEPPL + H AC
Sbjct: 291 CPKAFDRCSREEPPLFRVGDGHLSAC 316
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 236 bits (597), Expect = 2e-61
Identities = 130/325 (40%), Positives = 197/325 (60%), Gaps = 22/325 (6%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP- 69
NL +F G+ K A++ +S ++ KGETF L GE+GCGKS R + +LIE
Sbjct: 13 NLTVHFYTYAGIVK-------AIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
Query: 70 ---TEGSIYF---DG--IDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRP 120
EG + + DG +D+ KL ++E+RK+R + +FQDP +SL+P T+ +
Sbjct: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDF 178
+E+H +S +E K V+IL++V + + ++ YPHELSGG QRV I I NP
Sbjct: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
Query: 179 VVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
++ DEPT+ALD+++QAQIL+LL ++ K+ T + I+H++ V+ +DR+ +MY GK+VE
Sbjct: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
Query: 239 ILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCP 298
I ++D K + HPYT LL + P +P + + + G VP+ I P GCRFH RCP
Sbjct: 246 IGTVDQIFKNPL-HPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
Query: 299 FVTQKCKDEEPPLVEIKKDHYVACH 323
V CK++ P L EI+ H+VACH
Sbjct: 303 KVMSICKEKVPELKEIEPGHFVACH 327
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 233 bits (588), Expect = 2e-60
Identities = 125/306 (40%), Positives = 189/306 (60%), Gaps = 15/306 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYF---DG--ID 80
V A++ +S ++ KGETF L GE+GCGKS R + +LIE G + + DG +D
Sbjct: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVGGQVLYYREDGSVVD 84
Query: 81 ITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVE 139
+ KL ++E+RK+R + +FQDP SSL+P T+ + +E+H ++ +E K V+
Sbjct: 85 LLKLSEEEIRKIRGNEIAYIFQDPHSSLDPLYTVGYQIAEAMEVHGKIKNIKEGIKKAVD 144
Query: 140 ILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQIL 197
IL++V + + ++ YPHELSGG QRV I + NP ++ DEPT+ALD++VQAQIL
Sbjct: 145 ILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLSNNPRILIADEPTTALDVTVQAQIL 204
Query: 198 NLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAY 257
+L+ L+ K+ T + I+H++ V+ +DR+ +MY GK+VEI ++D K + HPYT
Sbjct: 205 DLINQLKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPL-HPYTQG 263
Query: 258 LLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKD 317
LL + P +P + + + G VP+ IN P GCRFH RCP CK + P L EI+
Sbjct: 264 LLRAVP--NPLTKIEKLEAIPGTVPNLINPPSGCRFHPRCPKAMDICKQKVPELKEIEPG 321
Query: 318 HYVACH 323
H+VACH
Sbjct: 322 HFVACH 327
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 231 bits (584), Expect = 7e-60
Identities = 129/303 (42%), Positives = 183/303 (59%), Gaps = 21/303 (6%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDIT-KLDKDEMR 90
AV + I KGETF L GESG GK+T GR ++ L + + G I FDG I K +++
Sbjct: 24 AVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSREQAA 83
Query: 91 KLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH 150
+L RR+ ++FQDP +SLN R T+ + L HRL + EEE+ +K+ I+ VGL EH
Sbjct: 84 ELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEH 143
Query: 151 LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLT 210
L+RYPHE SGGQ QR+ IARA++ PDFV+ DEP SALD+SV+AQ+LNLL Q++ LT
Sbjct: 144 LTRYPHEFSGGQRQRIGIARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLT 203
Query: 211 YLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKR 270
YLFI+HD+SV++++SDRI ++Y G +VE+ ++ I HPYT LL + P P
Sbjct: 204 YLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFNNPI-HPYTQALLSAVPI--PDPI 260
Query: 271 TSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDKTRE 330
RK +L V G + + ++P +VEI+ HYV + + R
Sbjct: 261 LERKKVL--------KVYEGSQ---------HDYETDKPSMVEIRPGHYVWANQAELARY 303
Query: 331 ELG 333
+ G
Sbjct: 304 QKG 306
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 230 bits (580), Expect = 2e-59
Identities = 122/319 (38%), Positives = 206/319 (64%), Gaps = 14/319 (4%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ ENLK YF +GG+F +K + V A+DG++++I++ E G+ GESG GK+T GR+ + L
Sbjct: 15 VKVENLKVYF-TKGGMFTKKYV-VKALDGVTLSIKEREIMGVVGESGSGKTTLGRVTIGL 72
Query: 67 IEPTEGSIYF--DGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
+PT G++Y D +I ++K +++ + + +++QDP SS++P M +YD L PL+
Sbjct: 73 QKPTSGNVYIKADNKEIN-VNKAKLKDISNYVQMIYQDPYSSIDPIMRVYDVLATPLKYK 131
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
++++ ++ KI E + V L E L ++LSGGQ QR+SIARAI+ NP ++V DEP
Sbjct: 132 KMSDIDK----KIEEAMRLVDLPLELLENRVYQLSGGQRQRLSIARAIVVNPKYIVADEP 187
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
T+ LD S++ +IL ++ + + ++++I+H++ + + +SDRI ++YLGK+VE+ + ++
Sbjct: 188 TTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGKIVELGNSNE 247
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVI-LTGEVPSPINVPPGCRFHVRCPFVTQK 303
K + HPYT L+ P + PS R K I + ++ P GC F+ RCPF K
Sbjct: 248 IIKNPL-HPYTQGLIEVYPRIDPSLRDKIKEIKIKVDIVRP---DKGCVFYPRCPFAMPK 303
Query: 304 CKDEEPPLVEIKKDHYVAC 322
CK++EP L E+ ++HYVAC
Sbjct: 304 CKEQEPELKEVSQNHYVAC 322
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 229 bits (579), Expect = 3e-59
Identities = 126/332 (37%), Positives = 201/332 (59%), Gaps = 23/332 (6%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + +NL+ YF G+ K AVDG+S I +G T G+ GESGCGKS R
Sbjct: 1 MSTLLQIKNLRTYFFTDEGVVK-------AVDGVSFEIEEGRTLGVVGESGCGKSVTARS 53
Query: 63 LLRLIEPT----EGSIYF--DG--IDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTI 113
+++L+ G I + DG +D+ K K+E+RK+R R + ++FQ+P ++ +P TI
Sbjct: 54 IIKLLSTAGRIVSGEILYNMDGQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVYTI 113
Query: 114 YDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARA 171
D + + I+ +++E ++ VE+L VG+ E+ + YP E SGG QR IA A
Sbjct: 114 GDQITEGM-IYHFGITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMA 172
Query: 172 IITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIM 231
+ NP ++ DEPT+ALD+++QAQ+L+LL +LQ+++ + + I+H++ V+ M+D + +M
Sbjct: 173 LSCNPRLLIADEPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVVVM 232
Query: 232 YLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGC 291
YLG+VVE +++ HPYT+ LL S P + KR R ++ G+VP P N+P GC
Sbjct: 233 YLGRVVESAPVEELFYNP-KHPYTSLLLRSIPVV--GKRVERLEVIEGDVPDPRNMPKGC 289
Query: 292 RFHVRCPFVTQK-CKDEEPPLVEIKKDHYVAC 322
RFH RCP++ + C + EP VE+ +H V+C
Sbjct: 290 RFHPRCPYMMKGICDEREPVEVEVGPEHRVSC 321
>emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 316
Score = 228 bits (575), Expect = 8e-59
Identities = 121/256 (47%), Positives = 165/256 (64%), Gaps = 7/256 (2%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRK 91
AVD +S+ +R+GET L GESGCGK+T RLLL L+EPT GS+ FDG D+ L ++R
Sbjct: 43 AVDDVSLEVREGETMALVGESGCGKTTLTRLLLGLLEPTAGSVRFDGQDLAALTASQLRG 102
Query: 92 LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH----RLAESEEEKYDKIVEILEAVGLG 147
+RR+M +V QDP SS+NPRM I D + PL H R + ++ E+LEAVGL
Sbjct: 103 VRRQMQVVLQDPYSSMNPRMRITDIVAEPLVTHDPEARGRRARARNRQRVGELLEAVGLD 162
Query: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
RYPHE SGGQ QRVSIARA+ +P +VLDEPTSALD+SVQA +L+LL +LQ++
Sbjct: 163 AGIQDRYPHEFSGGQRQRVSIARALALHPRLLVLDEPTSALDVSVQATVLDLLADLQQRL 222
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHP 267
LTY+F+SH+++V+ ++DR+ +M G +VE+ + HPYT LL + P L P
Sbjct: 223 GLTYVFVSHNLAVVAQVADRVAVMSRGSLVEVGEAAAVLRTP-RHPYTRQLLDAVPVLDP 281
Query: 268 SKRTSRKVILTGEVPS 283
R R+ P+
Sbjct: 282 --RRGRRAAARASAPT 295
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 228 bits (574), Expect = 1e-58
Identities = 118/301 (39%), Positives = 191/301 (63%), Gaps = 15/301 (4%)
Query: 5 DFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLL 64
+ + +NL K + V G ++KN + A+ +S++I++G+ + GESG GKST G+++L
Sbjct: 2 ELLSIQNLTKVYKVPAGFLRKKNFF--ALKEVSLSIKQGDFLAIVGESGSGKSTLGKIIL 59
Query: 65 RLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
RL +PT+G + F G DI + K+ RK+ VFQDP+SSLNPRM + + L+ PL +H
Sbjct: 60 RLEKPTKGKVSFKGKDIFSMGKEYTRKV----SAVFQDPRSSLNPRMKVEEILEEPLIVH 115
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
R+ +E +++++L+ V L EE L + P ++SGGQ QRV+IARA+I P+ +V DEP
Sbjct: 116 RVKGRKE----RVLKVLQRVRLSEELLEKRPLQISGGQAQRVAIARALILEPELIVADEP 171
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
T++LD+SVQ +IL L L K +++ F++HDI V++ +++ +G++Y G ++E+ ++
Sbjct: 172 TASLDVSVQEEILELFKELNSK-GISFFFVTHDIRVVEKVANMVGVIYAGILMELGKKEE 230
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
K + HPYT +LL + P HP R K + EV P GC F+ RCP ++C
Sbjct: 231 VLKNPL-HPYTKFLLENVPVRHPKDRKPLKYLQEEEVSIP---EEGCPFYPRCPEAMEEC 286
Query: 305 K 305
K
Sbjct: 287 K 287
>pir||S75333 oligopeptide transport protein oppF - Synechocystis sp. (strain
PCC 6803) >gi|1652324|dbj|BAA17247.1| (D90904)
oligopeptide transport ATP-binding protein OppF
[Synechocystis sp.]
Length = 650
Score = 227 bits (573), Expect = 1e-58
Identities = 119/247 (48%), Positives = 164/247 (66%), Gaps = 3/247 (1%)
Query: 19 RGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDG 78
+GGLF +K+++ AV+ +S + GET GL GESGCGKST R LLRL G I FDG
Sbjct: 393 QGGLFGKKSVF-KAVNDVSFQVYPGETLGLVGESGCGKSTLARALLRLTPIQTGRIIFDG 451
Query: 79 IDITKLDK--DEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
++ L + + R+LRR M I+FQ+P +SLNPRMTI ++ PL IH +S +++ +
Sbjct: 452 QNVAALPEKSQQWRRLRREMQIIFQNPYNSLNPRMTIGRAIQEPLIIHEPKQSTKQQRQR 511
Query: 137 IVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQI 196
+ E+LE VG+ + +RYPHELSGGQ QR+ IARA+ NP F++ DE SALD+SVQAQ+
Sbjct: 512 VAELLERVGISPQWFNRYPHELSGGQRQRICIARALALNPRFIICDESVSALDVSVQAQV 571
Query: 197 LNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTA 256
LNLL LQR LTY+FISHD+SV+++M DRI +M G++ E ++ YT
Sbjct: 572 LNLLKELQRDLQLTYIFISHDLSVVRFMGDRIMVMNRGQLAEPINTAQEIIENPQSAYTK 631
Query: 257 YLLLSTP 263
L+ S P
Sbjct: 632 KLIQSIP 638
Score = 144 bits (359), Expect = 2e-33
Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 47/280 (16%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLI------EPTEGSIYF-----DGID 80
AV G+ + +GE G+ GESG GKS ++ L+ EP+ +F ++
Sbjct: 59 AVKGVDFELERGEILGIVGESGSGKSVTSLGIMGLVPKPGWVEPSSEIDFFAQAQSSPVN 118
Query: 81 ITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIV- 138
+ L + + R+ R ++ ++FQ+P SSLNP TI + + +H+ EE + I
Sbjct: 119 LVALPEGDKRQYRGGKIAMIFQEPMSSLNPVYTIGFQIIEAIRLHQNVTQEEAQNQAIAL 178
Query: 139 ----------EILEAVGLGEEH----------------------LSRYPHELSGGQLQRV 166
E+LE L +E L RYPHELSGGQLQRV
Sbjct: 179 LQEVRVLPKDEVLEEEFLAQEQAQPRGKVTQNLASYIQQRKQSFLKRYPHELSGGQLQRV 238
Query: 167 SIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF-NLTYLFISHDISVLQYMS 225
IA AI NP ++ DEPT+ALD++VQA+IL LL +L ++ ++ +FISHD+ V+ ++
Sbjct: 239 MIAMAISANPRLLIADEPTTALDVTVQAEILRLLRDLCKQHQEMSLIFISHDLGVINEIA 298
Query: 226 DRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPAL 265
DR+ +MY G++VE + + HPYT LL P L
Sbjct: 299 DRVAVMYRGEIVE-QGLKEQILHSPQHPYTKGLLACRPRL 337
>pir||T03432 probable transport protein accC - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153179|gb|AAC17199.1| (AF010180) AccC
[Agrobacterium tumefaciens]
Length = 338
Score = 226 bits (570), Expect = 3e-58
Identities = 128/310 (41%), Positives = 186/310 (59%), Gaps = 7/310 (2%)
Query: 14 KYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGS 73
K F ++ GLF + +++V AV+ I + + E G+ GESG GKST GRLLL L TEG
Sbjct: 13 KVFRLKSGLFVKPSVHV-AVNSIDLELAPRERVGVVGESGSGKSTLGRLLLGLTSTTEGE 71
Query: 74 IYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEK 133
+ F+G+ T + R+ +V Q+P S+LNP+MTI + + + +HR+A +
Sbjct: 72 VLFEGLAHTDRSARDWSTFRKETSLVQQNPLSALNPQMTIGEQIAEAVWVHRVANAGAR- 130
Query: 134 YDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQ 193
D+ +L+ VGL ++RYPH++SGGQ QRV IARA+I +P VV DE SALD+SVQ
Sbjct: 131 -DRAATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALILDPKLVVFDEAVSALDVSVQ 189
Query: 194 AQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHP 253
AQ++ LL L ++ +L Y+FI+HD+ +++++ DRI +MYLG+VVE I HP
Sbjct: 190 AQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGDIKSVYAWP-RHP 248
Query: 254 YTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVE 313
YT LL S P + P+ R I GE+ + V GC F RCPF ++C +E PL+
Sbjct: 249 YTRALLASVPTMDPTVRNIEPPI-KGELDAG-KVMTGCAFRSRCPFAIERCA-KETPLLR 305
Query: 314 IKKDHYVACH 323
ACH
Sbjct: 306 PAGGQLAACH 315
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 226 bits (569), Expect = 4e-58
Identities = 126/305 (41%), Positives = 175/305 (57%), Gaps = 22/305 (7%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRK 91
AVDG+ ++IR+GE L GESGCGK+T R LL L+ PT G + FDG + + ++
Sbjct: 53 AVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGLVRPTGGRVTFDGAPLGYSAR-ALKA 111
Query: 92 LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EE 149
RRR +V QDP SLNPR T+YD + L IH A E + E L GL E
Sbjct: 112 YRRRAQLVLQDPSGSLNPRHTVYDIVAEGLRIHGHAGDERTA---VAEALSRAGLRPPER 168
Query: 150 HLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNL 209
RYPHELSGGQ QRV IA A++ P+ +V DEP ++LD SV+ +IL LL+ L+ + L
Sbjct: 169 FFLRYPHELSGGQRQRVVIAGALVLQPELLVADEPVASLDASVRGEILALLLRLRTELGL 228
Query: 210 TYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSK 269
+ L ++HD+ + ++DR+ +MYLG++VE +++ HPYT LL P +
Sbjct: 229 SALVVTHDLGLAWNIADRVAVMYLGRIVETGAVEQVLTAP-RHPYTQALLSVLP-----E 282
Query: 270 RTSRKVILTGEVPSPINVPPGCRFHVRCPF----------VTQKCKDEEPPLVEIKKDHY 319
V+LTGE P P +P GCRFHVRCP V C++EE ++ +
Sbjct: 283 APGAPVVLTGEPPDPSYIPGGCRFHVRCPVLASGEAVRAGVADACRNEELEILRGGDESQ 342
Query: 320 VACHY 324
VACH+
Sbjct: 343 VACHW 347
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 224 bits (565), Expect = 1e-57
Identities = 121/269 (44%), Positives = 171/269 (62%), Gaps = 14/269 (5%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ NL K F +R + AVD +S++I T GL GESGCGKST RL++RL
Sbjct: 305 LTIRNLTKTFWLRESPLAPPKEF-RAVDDVSLDIPARSTVGLVGESGCGKSTLSRLVMRL 363
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+EP G+I FDGID+T LD++ +R R+ +VFQ+P SLNPR T+ D + P++IH
Sbjct: 364 MEPNSGTIEFDGIDLTSLDRERLRHARQNFALVFQNPYGSLNPRQTVTDLIAAPVDIHAK 423
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
E + ++L+AVGL + + RYPHE SGGQ QR+ IARA+ P ++ DE S
Sbjct: 424 GRDREAI---VAKLLDAVGLPRDAMRRYPHEFSGGQRQRIVIARALALRPKLLICDEAVS 480
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
ALD+SVQAQ+LNLL +LQ +F+LTYLFI+HD+SV++++SD I +M G++VE + ++
Sbjct: 481 ALDVSVQAQVLNLLQDLQDEFDLTYLFITHDMSVVRHISDTIAVMQKGRIVETGTAEEV- 539
Query: 247 KGEIYHP---YTAYLLLSTPAL---HPSK 269
HP YT LL + P + PSK
Sbjct: 540 ---FDHPKDEYTRTLLRAVPKIGTAQPSK 565
Score = 158 bits (395), Expect = 1e-37
Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 16/276 (5%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M ++ + +NL F GL AV+ +S+++ GE GL GESG GK+
Sbjct: 1 MPSREVLKIDNLTVAFKTGDGLRT-------AVNSVSLSLHSGEILGLVGESGSGKTILS 53
Query: 61 RLLLRLIEPTE----GSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYD 115
+ L+ P G++ F G D+ D +RKLR +R+ ++FQDP +SL+P T
Sbjct: 54 LAAMGLLPPNAVVAGGTVKFFGEDLLTARPDVLRKLRGKRIAMIFQDPMASLDPVFTCGS 113
Query: 116 TLKRPLEIHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAII 173
+ + +H + + +++L VG+ E + YPHELSGGQ QRV IA A+
Sbjct: 114 QIVESILLHERVP-RRNAHQRALDLLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMAVA 172
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
PD ++ DEPT+ALD++VQ Q+LNLL NL ++ L I+HD+ V+ ++DR+ ++Y
Sbjct: 173 CKPDVIIADEPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVIYR 232
Query: 234 GKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSK 269
G ++E D YT L+ S P++ K
Sbjct: 233 GDMMEEAKTTDLFAAP-KSAYTKALIASMPSVSTPK 267
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 224 bits (564), Expect = 2e-57
Identities = 132/334 (39%), Positives = 199/334 (59%), Gaps = 25/334 (7%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ + +LK YF + G K AVDG+S +IR+GE GL GESGCGKS +
Sbjct: 1 MEKVLEIRDLKVYFDLTEGTVK-------AVDGVSFDIRRGEILGLVGESGCGKSVTAQS 53
Query: 63 LLRLIEPT----EGSIYFDG----IDITKLDKD--EMRKLRRR-MGIVFQDPKSSLNPRM 111
+LR++ + G I F +D+T+LD + E+R +R + + ++FQ+P +S +P
Sbjct: 54 ILRILPKSARIVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVY 113
Query: 112 TIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIA 169
T+ + + +H S+EE ++VE+L+ V + E+ + YP ELSGG LQR IA
Sbjct: 114 TVGAQMIEAILLHENV-SKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIA 172
Query: 170 RAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIG 229
A+ NP ++ DEPT+ALD+++QAQIL L+ LQ++++ + L I+HD+ V+ M+DR+
Sbjct: 173 MAMSLNPTLLLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMADRVA 232
Query: 230 IMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPP 289
+MYLG +VE + + K + HPYT LL S P + R +R + G VP P N+P
Sbjct: 233 VMYLGNIVETAEVFELFKNPL-HPYTQALLRSIPKI--GIRKTRLETIKGMVPDPYNLPT 289
Query: 290 GCRFHVRC-PFVTQKCKDEEPPLVEIKKDHYVAC 322
GCRFH RC F+ C +EPP VE+K H V C
Sbjct: 290 GCRFHNRCEKFMKGLCDVKEPPEVEVKPGHKVKC 323
>pir||T45281 probable ABC transporter intracellular ATPase chain BldKE
[imported] - Streptomyces coelicolor (fragment)
>gi|1532205|gb|AAB09558.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldKE
[Streptomyces coelicolor A3(2)]
Length = 284
Score = 222 bits (561), Expect = 4e-57
Identities = 110/248 (44%), Positives = 162/248 (64%), Gaps = 3/248 (1%)
Query: 17 PVRGGLFKQKNLY-VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIY 75
P++GG Q + + AVD + + G GL GESGCGKST GR L RL EPT+GSI
Sbjct: 27 PIKGGFPDQAHRRPLKAVDRVDFEVFPGRELGLVGESGCGKSTTGRQLTRLYEPTQGSIE 86
Query: 76 FDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD 135
+ G DIT+ ++ E+ +R + ++FQDP +SLNPR T+ + P+EI+ + +
Sbjct: 87 YRGKDITRANRRELAPVRSEIQMIFQDPYASLNPRQTVGTIISGPMEINGI-NPPGGREK 145
Query: 136 KIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQ 195
++ E+LE VGL EH +R+PHE SGGQ QR+ +ARA+ P +V DEP SALD+S+QAQ
Sbjct: 146 RVRELLEIVGLNPEHYNRFPHEFSGGQRQRIGVARAVALQPKLIVADEPVSALDVSIQAQ 205
Query: 196 ILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYT 255
++NLL +QR+ + ++FI+HD++++++ S R+ +MYLGK+VEI D HPYT
Sbjct: 206 VVNLLQEVQREMGIAFVFIAHDLAIVRHFSQRVAVMYLGKIVEIADRDSL-YNRPRHPYT 264
Query: 256 AYLLLSTP 263
LL + P
Sbjct: 265 HALLSAVP 272
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 222 bits (561), Expect = 4e-57
Identities = 127/323 (39%), Positives = 188/323 (57%), Gaps = 18/323 (5%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+NL +F + G+ K AV+ +S ++ E G+ GE+G GKS + ++RLI+P
Sbjct: 11 KNLSTWFYMEEGIVK-------AVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLIKP 63
Query: 70 ----TEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
G I + G DI K+ + EM ++R + + ++FQDP SLNP TI D L + H
Sbjct: 64 PGKIVSGEIIYKGQDILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIGDQLMETIRYH 123
Query: 125 RLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
L + Y + VE+LE VG+ E + ++ YP E SGG QRV IA A+ NP ++ D
Sbjct: 124 -LGYDKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSVLIAD 182
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPT+ALD+++QAQIL L+ LQ++F +FI+HD+ V+ M+DRI +MY G+ VEI +
Sbjct: 183 EPTTALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGGRQVEIGTS 242
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQ 302
D HPYT LL S P + KR + + G+ P +++PP C F RCP +
Sbjct: 243 DQIFYSP-RHPYTKMLLRSVPRV--DKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRVE 299
Query: 303 KCKDEEPPLVEIKKDHYVACHYP 325
+C E P L EI+++HYV C P
Sbjct: 300 RCLKELPELSEIEENHYVRCFNP 322
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 220 bits (556), Expect = 1e-56
Identities = 127/328 (38%), Positives = 190/328 (57%), Gaps = 19/328 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + NLK YF F++K + AVDG+ +I KGET L GESG GKS
Sbjct: 1 MSTLLEVNNLKTYF------FRKKEP-IPAVDGVDFHISKGETVALVGESGSGKSITSLS 53
Query: 63 LLRLIEPT-----EGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDT 116
++ L++ + +GSI + D+T +++ K+R + ++FQ+P +SLNP +TI +
Sbjct: 54 IMGLVQSSGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQ 113
Query: 117 LKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIIT 174
+ L H+ + +E + + VE+L+ VG E+ + YPH LSGG QRV IA A+
Sbjct: 114 ITEVLIYHKNMKKKEAR-QRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSC 172
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
NP ++ DEPT+ALD+++QAQ+L L+ +L +KFN + L I+HD+ V+ +DR+ +MY G
Sbjct: 173 NPKLLIADEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCG 232
Query: 235 KVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFH 294
+VVE ++DD E HPYT LL S P + + + G VP+P N+PPGCRF
Sbjct: 233 QVVENATVDDLFL-EPLHPYTEGLLTSIPVI--DGEIDKLNAIKGSVPTPDNLPPGCRFA 289
Query: 295 VRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
RCP KC +P L+ K V C
Sbjct: 290 PRCPKAMDKCWTNQPSLLTHKSGRTVRC 317
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 220 bits (555), Expect = 2e-56
Identities = 122/325 (37%), Positives = 186/325 (56%), Gaps = 19/325 (5%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+NL YF G K AV G+ I G+T G+ GESG GKS +L L+E
Sbjct: 9 KNLHTYFFTNKGTIK-------AVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLEY 61
Query: 70 ----TEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
+G I F GI++ L K E+RK+R + ++FQ+P +SLNP I L PL +H
Sbjct: 62 PGKIVQGEINFGGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHRIGRQLSEPLILH 121
Query: 125 RLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ S++E + +++L V + E + YP +LSGG QRV IA A+ P ++ D
Sbjct: 122 QHM-SKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAMALACKPRLLIAD 180
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPT+ALD+++QAQI L+ +L++K N +FI+HD+ + ++D + +MY G++VE +
Sbjct: 181 EPTTALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAVMYTGEIVERAPV 240
Query: 243 DDF--RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFV 300
D R+ + HPY LL S P L + + G VP P+ +P GCRF RC +
Sbjct: 241 DVIFDRQTQFSHPYKEGLLESIPLL--DEEVEYLAQIQGSVPHPLKLPKGCRFSTRCEYA 298
Query: 301 TQKCKDEEPPLVEIKKDHYVACHYP 325
T+KC++E+P LVE+++ H + C YP
Sbjct: 299 TEKCRNEKPELVEVEEGHLIRCFYP 323
>gi|10954942 Probable accC [Agrobacterium tumefaciens]
>gi|6498295|dbj|BAA87747.1| (AB016260) Probable accC
[Agrobacterium tumefaciens]
Length = 339
Score = 220 bits (555), Expect = 2e-56
Identities = 125/310 (40%), Positives = 184/310 (59%), Gaps = 6/310 (1%)
Query: 14 KYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGS 73
K F ++ GLF + +++V AV+ I + + E + ESG GKST GRLLL L TEG
Sbjct: 13 KVFRLKSGLFVKPSVHV-AVNSIDLELAPRERVSVVRESGSGKSTLGRLLLGLTSTTEGE 71
Query: 74 IYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEK 133
+ F+G+ T + R+ +V Q+P S+LNP+MTI + + + +HR+A +
Sbjct: 72 VLFEGLAHTDRSARDWSTFRKETSLVQQNPLSALNPQMTIGEQIAEAVWVHRVANRAGAR 131
Query: 134 YDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQ 193
D+ +L+ VGL ++RYPH++SGGQ QRV IARA+I +P V+ DE SALD+SVQ
Sbjct: 132 -DRAATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALILDPKLVIFDEAVSALDVSVQ 190
Query: 194 AQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHP 253
AQ++ LL L ++ +L Y+FI+HD+ +++++ DRI +MYLG+VVE I HP
Sbjct: 191 AQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGDIKSVYAWP-RHP 249
Query: 254 YTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVE 313
YT LL S P + P+ R I GE+ + V GC F RCPF ++C +E PL+
Sbjct: 250 YTRALLASVPTMDPTVRNIEPPI-KGELDAG-KVMTGCAFRSRCPFAIERCA-KETPLLR 306
Query: 314 IKKDHYVACH 323
ACH
Sbjct: 307 PAGGQLAACH 316
>pir||D83419 probable ATP-binding component of ABC transporter PA1807 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947791|gb|AAG05196.1|AE004607_2 (AE004607) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 220 bits (555), Expect = 2e-56
Identities = 116/253 (45%), Positives = 171/253 (66%), Gaps = 3/253 (1%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ ++L+ +FP+R G+F++ +V AVDG++ + +G+T G+ GESG GKST G +LRL
Sbjct: 275 LAVDDLRVWFPIRKGVFRRTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTLGLAILRL 334
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+E ++G I F+G + L + ++R LRR M +VFQDP SL+PRM + + + L IHR+
Sbjct: 335 LE-SQGGIRFEGTRLDGLAQHDVRPLRREMQVVFQDPYGSLSPRMCVGEIVGEGLRIHRI 393
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
SE E+ I++ L VGL + RYPHE SGGQ QR++IARA++ P ++LDEPTS
Sbjct: 394 G-SEAEQEQAIIDALVEVGLDPQTRYRYPHEFSGGQRQRIAIARALVLKPALILLDEPTS 452
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
ALD +VQ Q++ LL LQ K+NLTYLFISHD++V++ +S ++ ++ GKVVE S +
Sbjct: 453 ALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHGKVVEQGSAEAVF 512
Query: 247 KGEIYHPYTAYLL 259
HPYT LL
Sbjct: 513 ASP-QHPYTQQLL 524
Score = 173 bits (434), Expect = 3e-42
Identities = 100/253 (39%), Positives = 155/253 (60%), Gaps = 10/253 (3%)
Query: 33 VDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-----EGSIYFDGIDITKLDKD 87
V+G+S +IR+GET L GESG GKS +LRL+ + GSI++ G D+ KL +
Sbjct: 25 VEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYSVASHPAGSIHYQGEDLLKLPER 84
Query: 88 EMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGL 146
+R +R R+ +VFQ+P +SLNP TI L L +H+ + +I+E+LE VG+
Sbjct: 85 RLRGIRGNRIAMVFQEPMTSLNPLHTIEKQLAEVLALHKGLGGAKASA-RILELLELVGI 143
Query: 147 GE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
E + L YPHELSGGQ QRV IA A+ P ++ DEPT+ALD++VQ +IL+LL +LQ
Sbjct: 144 PEPAKRLKAYPHELSGGQRQRVMIAMALACEPQLLIADEPTTALDVTVQLKILDLLKDLQ 203
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPA 264
+ ++ L I+HD+++++ ++ R+ +M G++VE S + HPYT LL + P+
Sbjct: 204 ARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVEQASCQELFAAP-RHPYTRELLNAEPS 262
Query: 265 LHPSKRTSRKVIL 277
P+ + +L
Sbjct: 263 GAPASNPPGETLL 275
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 219 bits (553), Expect = 3e-56
Identities = 114/257 (44%), Positives = 165/257 (63%), Gaps = 6/257 (2%)
Query: 5 DFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLL 64
+ + ENL++++ + G L Q + AVDG+ + +R+GET GL GESGCGKST RL+L
Sbjct: 274 ELLRVENLQRHYRLGGWL--QPQTTIRAVDGVDLTLRRGETLGLVGESGCGKSTLSRLIL 331
Query: 65 RLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
+LI G + F G +T+L ++R+ RR + ++FQDP + LNP+MT+ L PL IH
Sbjct: 332 QLIPANAGDVVFLGRSLTQLSAAQLRRTRRDLQMIFQDPHACLNPKMTVAQNLLEPLLIH 391
Query: 125 RLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
RL ++ +++ E+L V L E +L RYPH LSGGQ QRV+IARA+IT+P V+ D
Sbjct: 392 RLM-AKRAAQERVREMLMQVELTPAEAYLHRYPHALSGGQRQRVAIARALITHPQLVICD 450
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EP S LD +QAQ+L L+ L+ + LTYLFI+HD+++ + DR+ +MY GK+VE+
Sbjct: 451 EPVSMLDAHIQAQVLALMQELKEQLQLTYLFITHDLAIARRFCDRVAVMYRGKIVELAPT 510
Query: 243 DDFRKGEIYHPYTAYLL 259
HPYT LL
Sbjct: 511 AQL-FAHPQHPYTQKLL 526
Score = 184 bits (462), Expect = 1e-45
Identities = 98/239 (41%), Positives = 145/239 (60%), Gaps = 5/239 (2%)
Query: 33 VDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLDKDEM 89
VDG+S + GE FGL G SGCGKST G+ +LRL+ P G I G + L ++
Sbjct: 27 VDGVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPPGSQIFGQIALQGQSLLGLSASQL 86
Query: 90 RKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGE 148
++LR ++G+VFQDP + LNP M+IYD L H + S ++ +I+E+LE V +
Sbjct: 87 QRLRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRSHWFSWSRPQRRQRIIEVLERVKIPA 146
Query: 149 EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFN 208
L +YPHELSGG QRV+IA A++ NP ++ DEPT+ALD++V A+IL L L ++
Sbjct: 147 NRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEPTTALDVTVAAEILEELTRLCQQEQ 206
Query: 209 LTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHP 267
L ISHD++++ DR+ +M+ GK++E+ + + HPYT LL +T P
Sbjct: 207 RGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAHQVLQ-RPQHPYTQSLLAATQLTSP 264
>pir||F64557 dipeptide transport ATP-binding protein dppF - Helicobacter pylori
(strain 26695) >gi|2313400|gb|AAD07371.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Helicobacter pylori 26695]
Length = 268
Score = 219 bits (553), Expect = 3e-56
Identities = 113/265 (42%), Positives = 170/265 (63%), Gaps = 3/265 (1%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+ LKK + + GLFK K + +HA++GIS + + E + GESGCGKST ++L +
Sbjct: 7 KELKKSYAIDRGLFKPKRV-IHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQ 65
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
G+IYF+G K + R+++ ++FQDP SSLNPR + + + PL ++
Sbjct: 66 DSGAIYFNGKRHLHFSKQDWFDYRKKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSK 125
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
+E K K++EI++ VGL E + RYPH+ SGGQ QR+ IARA+I +P V+ DEP SALD
Sbjct: 126 KEIK-TKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALD 184
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+S+QAQ+LNLL++LQ++ LTY+FISHD+ V++++SD+I +M G++VE +D
Sbjct: 185 VSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGDVDSVISAP 244
Query: 250 IYHPYTAYLLLSTPALHPSKRTSRK 274
HPYT LL + P L S + K
Sbjct: 245 -KHPYTQKLLNAVPHLEKSMQRFAK 268
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 219 bits (552), Expect = 4e-56
Identities = 120/290 (41%), Positives = 179/290 (61%), Gaps = 21/290 (7%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDIT-KLDKDEMR 90
AV + I+KGETF L GESG GK+T GR ++ L + + G I +DG I + K E
Sbjct: 24 AVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKSEAN 83
Query: 91 KLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH 150
+L R++ ++FQDP +SLN R T+ + L L ++EEE+ +KI ++ VGL EH
Sbjct: 84 ELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEH 143
Query: 151 LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLT 210
L+RYPHE SGGQ QR+ IARA++ NP+FV+ DEP SALD+SV+AQ+LNLL +Q + LT
Sbjct: 144 LTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLT 203
Query: 211 YLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKR 270
YLFI+HD+SV++++SDRI +++ G +VE+ ++ I HPYT LL + P P
Sbjct: 204 YLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFNNPI-HPYTQSLLSAVPIPDPILE 262
Query: 271 TSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYV 320
+++++ +H T ++P +VEIK +H+V
Sbjct: 263 RQKELVV---------------YHPDQHDYTL----DKPSMVEIKPNHFV 293
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 219 bits (552), Expect = 4e-56
Identities = 120/290 (41%), Positives = 179/290 (61%), Gaps = 21/290 (7%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDIT-KLDKDEMR 90
AV + I+KGETF L GESG GK+T GR ++ L + + G I +DG I + K E
Sbjct: 24 AVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKSEAN 83
Query: 91 KLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH 150
+L R++ ++FQDP +SLN R T+ + L L ++EEE+ +KI ++ VGL EH
Sbjct: 84 ELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEH 143
Query: 151 LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLT 210
L+RYPHE SGGQ QR+ IARA++ NP+FV+ DEP SALD+SV+AQ+LNLL +Q + LT
Sbjct: 144 LTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLT 203
Query: 211 YLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKR 270
YLFI+HD+SV++++SDRI +++ G +VE+ ++ I HPYT LL + P P
Sbjct: 204 YLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFNNPI-HPYTQSLLSAVPIPDPILE 262
Query: 271 TSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYV 320
+++++ +H T ++P +VEIK +H+V
Sbjct: 263 RQKELVV---------------YHPDQHDYTL----DKPSMVEIKPNHFV 293
>pir||A71952 dipeptide transport system ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4154801|gb|AAD05857.1|
(AE001465) DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 268
Score = 219 bits (552), Expect = 4e-56
Identities = 112/259 (43%), Positives = 168/259 (64%), Gaps = 3/259 (1%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+ LKK + + GLFK K + +HA++GIS + + E + GESGCGKST ++L +
Sbjct: 7 KELKKSYAIDRGLFKPKRV-IHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQ 65
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
G+IYF+G K + R+++ ++FQDP SSLNPR + + + PL ++
Sbjct: 66 DSGAIYFNGKRHLHFSKQDWFDYRKKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSK 125
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
+E K K++EI++ VGL E + RYPH+ SGGQ QR+ IARA+I +P V+ DEP SALD
Sbjct: 126 KEIK-TKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALD 184
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
+S+QAQ+LNLL++LQ++ LTY+FISHD+ V++++SD+I +M G++VE +D
Sbjct: 185 VSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGDVDSVISAP 244
Query: 250 IYHPYTAYLLLSTPALHPS 268
HPYT LL + P L S
Sbjct: 245 -KHPYTQKLLNAVPHLEKS 262
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 219 bits (552), Expect = 4e-56
Identities = 127/323 (39%), Positives = 185/323 (56%), Gaps = 16/323 (4%)
Query: 9 TENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE 68
TENLK Y+ + +F +K + V AVD ++I+I + E +G+AGESGCGKST R L IE
Sbjct: 6 TENLKSYYIL--DIFGKKRV-VKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAAIE 62
Query: 69 PTE----GSIYF----DGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKR 119
P + G + + +D+ L +E R+LR + V Q S LNP + I +T K
Sbjct: 63 PPQRIVGGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETFKD 122
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFV 179
+E H +++EE Y+ E ++ +GL E L+ YPH+LSGG QRV+IA A + +P +
Sbjct: 123 FIESHTTGKTKEEAYEMAKEHIKELGLPIEILNAYPHQLSGGMRQRVTIALATVLSPKVI 182
Query: 180 VLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
+ DEPT+ALD+ Q ++ LL +Q T + ++HD+ V ++DRI IMY GK++E
Sbjct: 183 IADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKIIEE 242
Query: 240 LSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPF 299
++ + + HPYT YL+ S P R+ G PS ++PPGC FH RCP
Sbjct: 243 GKTEEIFENPM-HPYTKYLIYSLPKFGDK---GRRESAPGSPPSLADLPPGCSFHPRCPH 298
Query: 300 VTQKCKDEEPPLVEIKKDHYVAC 322
+CK E PPL E H VAC
Sbjct: 299 AFDRCKKEVPPLKEYLPGHRVAC 321
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 219 bits (551), Expect = 5e-56
Identities = 125/329 (37%), Positives = 184/329 (54%), Gaps = 19/329 (5%)
Query: 18 VRGGLFKQKNLY--VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT----E 71
+ G K K Y VHA+ +S +++KG G+ GESG GKST G +LR +
Sbjct: 7 IEGLTVKYKTRYGTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPENARIES 66
Query: 72 GSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLA-- 127
G I F+G D+ ++D++ R+ R ++ ++FQ+ ++ +P I D L L++ R
Sbjct: 67 GKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQL---LDVARKCFP 123
Query: 128 -ESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+S E + I E L + E L +YPHELSGGQ QRV+I A++ +P+ V+ DEPT+
Sbjct: 124 NKSRNELLEIIKEKLRIANIDESVLKKYPHELSGGQRQRVAIGMALLADPEIVIADEPTT 183
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
LD+ Q QILN L +Q+ +T L I+HD+SV+ +S + ++Y GKV+E I
Sbjct: 184 GLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEYGDIKRVF 243
Query: 247 KGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKD 306
K +HPYT LL S P + K + G P N P GC FH RCP+ T C+
Sbjct: 244 KNS-HHPYTYLLLRSYPEMGKEKLYE----IPGSPPDLRNPPSGCVFHPRCPYATDLCRK 298
Query: 307 EEPPLVEIKKDHYVACHYPDKTREELGPL 335
EEP LVEI++ H+ ACHY +E+ L
Sbjct: 299 EEPKLVEIEEGHFSACHYATSFNKEVNSL 327
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 217 bits (546), Expect = 2e-55
Identities = 125/334 (37%), Positives = 184/334 (54%), Gaps = 22/334 (6%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I ENLK YF G+ K A++ +S I +GET+ L GE+GCGKS R L RL
Sbjct: 10 IEVENLKVYFYTYAGIVK-------AIEDVSFRICRGETYCLVGETGCGKSVTSRALTRL 62
Query: 67 IEP----TEGSIYF-----DGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDT 116
I P EG IY+ +DI LD+ E+R++R + +FQDP ++L+P TI
Sbjct: 63 IYPPGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQ 122
Query: 117 LKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIIT 174
+ + H S E + V +L+ V + E+ + YPHELSGG QR I ++
Sbjct: 123 VGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSN 182
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
P ++ DEPT+ALD+++QAQI++LL L+R+ LT L I+H++ ++ DR+ +MY G
Sbjct: 183 RPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAG 242
Query: 235 KVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFH 294
+VE +D+ + HPYT L+ + P +P + + G VP+ I PPGCRFH
Sbjct: 243 NIVEEAPVDELFSNPL-HPYTRALIRAVP--NPLAKIENLEHIPGTVPNLITPPPGCRFH 299
Query: 295 VRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDKT 328
RCP +C E+P L E H AC +K+
Sbjct: 300 PRCPLAFDRCSREKPLLKEYSPGHKAACWALEKS 333
>sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075750|pir||B53290 oligopeptide transport protein
oppF - Lactococcus lactis subsp. lactis
>gi|308851|gb|AAA16164.1| (L18760) ATP binding protein
[Lactococcus lactis] >gi|495178|gb|AAB00534.1| (U09553)
ATP binding protein [Lactococcus lactis]
Length = 319
Score = 216 bits (545), Expect = 3e-55
Identities = 111/272 (40%), Positives = 170/272 (61%), Gaps = 2/272 (0%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + + ++LK Y+P+R G F + V AVDG+ + I +GET GL GESG GKST G+
Sbjct: 1 MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKT 60
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
++ L + T G + + G D++K K + + ++FQD SSLNPR TIYD + P+
Sbjct: 61 IVGLEQMTSGQLIYKGQDVSKKKIRNQLKYNKDVQMIFQDAFSSLNPRKTIYDIIAEPIR 120
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
++ E +I E+L+ VGL ++ L +YP + SGGQ QR+ IARA+ TNP +V D
Sbjct: 121 NFEKIDANTEN-KRIHELLDIVGLPKQALEQYPFQFSGGQQQRIGIARAVATNPKLIVAD 179
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EP SALD+SVQAQ+LN + +Q+ + +LFISHD+ V+++M+D I +M+ G++VE +
Sbjct: 180 EPVSALDLSVQAQVLNFMKLIQKDLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTR 239
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRTSRK 274
D E H YT LL + P++ ++R +
Sbjct: 240 RDI-FDEPQHIYTKRLLSAIPSIDVTRRAENR 270
>pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376984|gb|AAD18822.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189001|gb|AAF37953.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979055|dbj|BAA98890.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 215 bits (541), Expect = 8e-55
Identities = 125/304 (41%), Positives = 175/304 (57%), Gaps = 2/304 (0%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +L K++ R F+ K + VD +S ++ GL GESG GKST L L
Sbjct: 10 IQATSLTKHYYKRSFWFQGKTIASRPVDDVSFSLYSRRAVGLIGESGSGKSTLALALAGL 69
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+ T G + F+G I K +LR ++ +VFQ+P++SLNPR TI D+L L H+L
Sbjct: 70 LPLTSGFLTFNGTPIKLHSKHGRHQLRSQVRLVFQNPQASLNPRKTILDSLGHSLLYHKL 129
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+E+ + E LE VGL EE+ RYPH+LSGGQ QRVSIARA++ P ++ DE S
Sbjct: 130 VP-KEKVLATVREYLELVGLSEEYFYRYPHQLSGGQQQRVSIARALLGVPQLIICDEIVS 188
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
ALD+S+QAQILN+L LQ+K +LTYLFISHD++V++ + IMY G++VE +
Sbjct: 189 ALDLSIQAQILNMLAELQKKLSLTYLFISHDLAVVRSFCTEVFIMYKGQIVEKGNTKRI- 247
Query: 247 KGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKD 306
+ HPYT LL + P +R S+ + S + GC F+ RCP + CK
Sbjct: 248 FSDPQHPYTRMLLNAQLPETPDQRQSKPIFQEYHKDSEESCSTGCYFYNRCPQKQEACKS 307
Query: 307 EEPP 310
E P
Sbjct: 308 EIIP 311
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 215 bits (541), Expect = 8e-55
Identities = 119/296 (40%), Positives = 174/296 (58%), Gaps = 7/296 (2%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP---TEGSIYFDGI 79
+K V+AV+ +S ++ KGET GL GESGCGKST G ++RL+ +GSI +GI
Sbjct: 13 YKTGEKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPKGTKIDGSIKIEGI 72
Query: 80 DITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIV 138
DI+ L +EMR++R ++ ++FQDP +SLNP + I D + HR S+E+ +
Sbjct: 73 DISSLSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHRPELSKEDARELAA 132
Query: 139 EILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILN 198
+ LE VG+ L YP + SGG QRV IA +I+ NP ++ DEPT++LD+ VQAQI+
Sbjct: 133 KALEDVGINRNRLKDYPFQFSGGMRQRVMIALSIVLNPAVLIADEPTTSLDVIVQAQIME 192
Query: 199 LLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYL 258
LL L ++ + I+HD+ ++ +DRIG+MY G +VE+ S + + HPYT L
Sbjct: 193 LLEKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHLVELASKERIFTNPL-HPYTVGL 251
Query: 259 LLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
L S P + + R + G P N P GCRF RC + C ++EPP EI
Sbjct: 252 LRSIPNTDVNDKELR--YIPGSPPDLSNPPEGCRFAPRCEKAMKICWEKEPPEFEI 305
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 214 bits (540), Expect = 1e-54
Identities = 114/313 (36%), Positives = 183/313 (58%), Gaps = 15/313 (4%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE-----PTEGSIYFD 77
F ++ AV+G+S + GET + GESG GKS + ++ +++ T G I F+
Sbjct: 12 FHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPGRVTAGEILFE 71
Query: 78 GIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
G D+ KL ++E RK+R M ++FQD SSLNP +T+ L +HR S ++ + K
Sbjct: 72 GRDLLKLKEEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHR-GMSRKDAHAK 130
Query: 137 IVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
VE+++ V + +E + +YPH+ SGG QR+ IA A+ P ++ DEPT+ALD++VQA
Sbjct: 131 AVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLIIADEPTTALDVTVQA 190
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
Q+++LL LQR+ ++ + I+HD+ V+ ++D+I +MY G++VE + D K HPY
Sbjct: 191 QVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHDIYKAPA-HPY 249
Query: 255 TAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
T LL S P L ++ + G P+ +PPGC FH RCP C+ + PPL ++
Sbjct: 250 TRGLLESIPRL--DQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTDVPPLYDV 307
Query: 315 KK---DHYVACHY 324
+ + ACH+
Sbjct: 308 TESDAERGSACHF 320
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 214 bits (539), Expect = 1e-54
Identities = 119/287 (41%), Positives = 164/287 (56%), Gaps = 9/287 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
V AVDG+S+++ KGE + GESG GKST + RLI P G I + G+D+ L
Sbjct: 24 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLA 83
Query: 86 KDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
+E+R+ R R +G+VFQDP + L+P T+ + L H LA S E + LE V
Sbjct: 84 GEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALELV 143
Query: 145 GLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
G+ + S YPH+LSGGQ QRV+IA A+ P ++ DEPT+ALD+ VQA+I++L+ LQ
Sbjct: 144 GIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQ 203
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPA 264
+ LT + ++HDI + SDRI +MY G++VEI +D I HPYT L+ S P
Sbjct: 204 EERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPI-HPYTEMLIKSVPD 262
Query: 265 LHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPL 311
+ + G P N PPGCRFH RCP C + P L
Sbjct: 263 PWEDREVKP---IPGSPPDLRNPPPGCRFHPRCPLRQPLCTNTRPSL 306
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 214 bits (539), Expect = 1e-54
Identities = 124/336 (36%), Positives = 190/336 (55%), Gaps = 29/336 (8%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ NLK YF G+ K +VDG++ +I+KGET + GESG GKS ++RL
Sbjct: 34 LAVNNLKTYFNTDDGVVK-------SVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRL 86
Query: 67 I-----EPTEGSIYFDGID-----ITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYD 115
I + G I F G D + + + EMR++R + ++FQ+P +SLNP T+ D
Sbjct: 87 IPMPPGQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGD 146
Query: 116 TLKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAII 173
+ + +H+ ++ +E D ++L VG+ E+ ++ YPH++SGG QRV IA A+
Sbjct: 147 QIAEAVVLHQ-GKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALS 205
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P ++ DEPT+ALD+++QAQIL+L+ NLQR+ ++ LFI+H++ V+ M+DR+ +MY
Sbjct: 206 CKPALLIADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYG 265
Query: 234 GKVVEILSIDDFRKGEIYHPYTAYLLLSTP-------ALHPSKRTSRKVILTGEVPSPIN 286
G+VVE + + K HPYT LL S P A P + R + G VP+P+N
Sbjct: 266 GRVVEEGDVIEIFKAP-RHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGNVPNPLN 324
Query: 287 VPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
+PPGC F RC F +C P L + H C
Sbjct: 325 LPPGCTFEPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1]
Length = 610
Score = 214 bits (539), Expect = 1e-54
Identities = 117/279 (41%), Positives = 179/279 (63%), Gaps = 8/279 (2%)
Query: 11 NLKKYFPVRG-GLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
N+ K+FPV G+ + + + AV G+ +++ G T G+ GESG GK+T R L L
Sbjct: 315 NVGKHFPVYSRGVIRGRVGVIKAVAGVDLDVEAGTTLGIVGESGSGKTTLIRSLFNLEPI 374
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
T G+I FDG D+ ++ + R++R+ + +VFQDP +SL+P MT+ D L P I+R+
Sbjct: 375 THGTILFDGQDVHRMPPRDRRRMRKCVQMVFQDPYASLDPMMTVRDILMEPAVINRMDRK 434
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
E+ +++E+LE V L EH +RYP+E SGGQ QR++IARA++ P +VLDEP S+LD
Sbjct: 435 LAER--RVMELLERVHLKPEHAARYPNEFSGGQRQRIAIARALMLYPRLLVLDEPVSSLD 492
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD-FRKG 248
+S+QA++L LL LQ+ NL+YLF+SHD+SV+ ++ + +MY G++VE +D+ FR
Sbjct: 493 VSIQAEVLTLLKELQKDLNLSYLFVSHDLSVVAEIAHSVIVMYRGRIVERGRVDELFRNP 552
Query: 249 EIYHPYTAYLLLSTPALHP--SKRTSRKVILTGEVPSPI 285
+ HPYT LL + P P +R R V + + SPI
Sbjct: 553 K--HPYTRALLSAVPIPDPRTERRRERIVFNSDTLASPI 589
Score = 152 bits (379), Expect = 8e-36
Identities = 107/309 (34%), Positives = 163/309 (52%), Gaps = 29/309 (9%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLDK 86
+ AV +S +I GE L GESG GKS ++ L+ GSI + G ++ +
Sbjct: 37 IEAVRDVSWSIGSGEVLALVGESGSGKSVSALAVMGLLPRNARVAGSIRWRGEELLGASE 96
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
R LR R+G+V QDP +SLNP TI ++ + H+ SE E ++ +E+LE +G
Sbjct: 97 KRRRALRGSRIGLVPQDPMTSLNPVYTIGAQIREGIRAHQKL-SEREMAERTLELLETMG 155
Query: 146 L--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ E ++ YPHELSGG QRV IA A+ NPD ++ DE T+ALD++VQAQ+L+ L
Sbjct: 156 IPHARERMNSYPHELSGGMRQRVVIAMAMANNPDLIIADEATTALDVTVQAQVLDALKKA 215
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHP---YTAYLLL 260
Q L I+HD+ V+ +DR+ +M G+VVE ++D+ Y P YT LL
Sbjct: 216 QALTGAALLLITHDLGVVAGRADRVAVMQRGEVVEQGTVDEI----FYQPASSYTRKLLH 271
Query: 261 STPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYV 320
S P L+ T ++ +P +V P + F +K E P++ ++ V
Sbjct: 272 SIPRLNH----------TPDLSAPSDVAPDAEV-IHSAF-ERKVGAEGAPILSMRN---V 316
Query: 321 ACHYPDKTR 329
H+P +R
Sbjct: 317 GKHFPVYSR 325
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 212 bits (534), Expect = 5e-54
Identities = 116/308 (37%), Positives = 185/308 (59%), Gaps = 12/308 (3%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT----EGSIYFDG 78
F+ K+ + AVD +++N+ K E + GESG GKS ++ L P EG I F G
Sbjct: 16 FQIKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLHNPERTKIEGEINFKG 75
Query: 79 IDITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKI 137
++ KL ++ K+R ++ ++FQDP ++LNP M I + + L +HR E K K+
Sbjct: 76 ENLVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQIGEALLLHRSLTKAERK-KKV 134
Query: 138 VEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQ 195
+++L VG+ E +YPHELSGG QRV IA AI P+F++ DEPT+ALD+++QAQ
Sbjct: 135 IDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLIADEPTTALDVTIQAQ 194
Query: 196 ILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYT 255
IL+L+ +L+ K + + I+HD+ V+ M+DR+ +MY G++VEI + + + HPYT
Sbjct: 195 ILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIADVFTLFERPL-HPYT 253
Query: 256 AYLLLSTPALHPSKRTSRKVILTGEVPSPINVP-PGCRFHVRCPFVTQKCKDEEPPLVEI 314
LL S P+ S + ++ G VP+ N+P GCRF R P++++ ++ P L E+
Sbjct: 254 RSLLNSVPS--ESNDQEKLHVIQGIVPALQNLPRKGCRFKDRIPWLSESAHEDHPELHEV 311
Query: 315 KKDHYVAC 322
+ H+V C
Sbjct: 312 EPGHFVRC 319
>gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T45539 moaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665715|gb|AAB88475.1| (AF242881) moaD
[Agrobacterium tumefaciens]
Length = 588
Score = 212 bits (533), Expect = 7e-54
Identities = 115/283 (40%), Positives = 170/283 (59%), Gaps = 3/283 (1%)
Query: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
+ + +L FP+RGGL VHAV+ S I KGET GL GESG GKST G+ +
Sbjct: 284 RPILEVRDLTVRFPLRGGLLGNVQGNVHAVEKASFAIGKGETLGLVGESGSGKSTIGKAI 343
Query: 64 LRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
+ L GSI DG I D+ + LRR + ++FQDP SL+ R TI + P+ +
Sbjct: 344 IDLAPRFGGSIVVDGRTIDYADEKSLAVLRRDVQMIFQDPFGSLDSRQTIGSAIVEPMYV 403
Query: 124 HRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDE 183
H +A E + +K+ +LE VGL S PHE SGGQ QR+ IARA+ +P ++ DE
Sbjct: 404 HGIASGRELR-EKMEWLLEKVGLDPARASSLPHEFSGGQRQRICIARALSMSPKLIIADE 462
Query: 184 PTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSID 243
SALD++++ QI+ L+++LQ +F ++YLFISHD++ ++ + R+ +MY G++VEI D
Sbjct: 463 AVSALDVAIKGQIIELMMDLQSEFGVSYLFISHDMAAVEKICTRVAVMYFGELVEIGGRD 522
Query: 244 DFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPIN 286
+ G H YT LL + P HPS+R++R +VP P++
Sbjct: 523 NV-IGRPGHSYTKRLLSAVPITHPSQRSARSTAAL-QVPQPVS 563
Score = 156 bits (391), Expect = 3e-37
Identities = 100/277 (36%), Positives = 156/277 (56%), Gaps = 22/277 (7%)
Query: 26 KNLYV-----HAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL----IEPTEGSIYF 76
KNL V V +S +I G T + GESG GKS ++ L + GSI
Sbjct: 10 KNLNVAFGKKQVVQDLSFDIAPGSTLAVVGESGSGKSVTSLAIMGLLPVGVAKASGSIQL 69
Query: 77 DGIDITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD 135
+G ++ L + EM +R ++ ++FQ+P +SLNP + + + IHR +E + +
Sbjct: 70 NGRELLSLSESEMCGIRGGKISMIFQEPMTSLNPVQKVGFQIGEAIRIHRGLRGKELR-N 128
Query: 136 KIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQ 193
++E+L+ VG+ E + YPH SGG QRV IA A+ NP ++ DEPT+ALD++VQ
Sbjct: 129 AVLEMLKKVGIPDAERRIDNYPHTFSGGMRQRVMIAMALACNPALIIADEPTTALDVTVQ 188
Query: 194 AQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD-FRKGEIYH 252
AQIL LL LQR+ N+ LFI+HD+ V+ ++DR+ +M G+VVE +D F + E
Sbjct: 189 AQILELLKQLQRETNVALLFITHDMGVVAEIADRVLVMRGGQVVESGPVDSVFTRPE--S 246
Query: 253 PYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPP 289
PYT L+ + P++ + K+ TG+ + I+ P
Sbjct: 247 PYTKVLIEAAPSV------AGKLATTGQPTTAIDALP 277
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 212 bits (533), Expect = 7e-54
Identities = 123/329 (37%), Positives = 185/329 (55%), Gaps = 17/329 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ V ENL+ Y+ ++ G K + AVD +S++ + E +G+AGESGCGKST ++
Sbjct: 1 MEKIAVAENLRAYYFIKSG---DKTTSIRAVDNVSLHFFENEVYGIAGESGCGKSTLLKV 57
Query: 63 LLRLIEP----TEGSIYF--DGID--ITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTI 113
L I+P +G + F DG + I + D+++K+R + + V Q S LNP I
Sbjct: 58 LFGEIKPPLKLVDGEVVFKLDGEEYRINSMSLDQLKKIRWKYVSYVPQGSMSVLNPVRKI 117
Query: 114 YDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAII 173
+E H + S EE + +I EA+GL L YPH+LSGG QRV+IA A +
Sbjct: 118 RRIFLDVIEEHT-SMSREEAFSRIESYFEALGLPVRVLDSYPHQLSGGMRQRVTIALATV 176
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
NP + DEPT+ALD+ VQ ++ LL + ++ T + ++HD+ V +++ RIG+MY
Sbjct: 177 LNPKVIFADEPTTALDVVVQRGVIQLLKKIHKEQKNTLVIVTHDMGVHAHLATRIGVMYA 236
Query: 234 GKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRF 293
G+++E + K + HPYT +L+ S P SRK G PS N+P GC F
Sbjct: 237 GRLIEEAETHEIFKNPL-HPYTRFLINSLPRFGD---RSRKEGTPGSPPSLANLPSGCPF 292
Query: 294 HVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
H RCP Q C + EP L+E+ ++H VAC
Sbjct: 293 HPRCPIADQICMEMEPDLIEVARNHKVAC 321
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 212 bits (533), Expect = 7e-54
Identities = 115/300 (38%), Positives = 182/300 (60%), Gaps = 12/300 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLI-----EPTEGSIYFDGIDITKL 84
V A+ G++ ++ KGET + GESG GKS + ++RL+ E G I F+G+DI K
Sbjct: 21 VKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEGNSEIKSGQILFNGMDIAKA 80
Query: 85 DKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEA 143
+ +M+K+R + + ++FQDP +SLNP MTI + PL H+ S+ E + + +L+
Sbjct: 81 HEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIKHQKI-SKHEAHKTALRLLQL 139
Query: 144 VGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLV 201
VG+ EE + +YPH+ SGG QRV IA ++ NP ++ DEPT+ALD+++QAQIL+L+
Sbjct: 140 VGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIADEPTTALDVTIQAQILDLMK 199
Query: 202 NLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLS 261
+LQ+K + + +FI+HD+ V+ ++DR+ +MY GK+VEI ++D+ HPYT L+ S
Sbjct: 200 DLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTVDEIFYNP-QHPYTWGLISS 258
Query: 262 TPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVA 321
P L ++ G P ++ P G F R + Q +EEPPL ++ HY A
Sbjct: 259 MPTLDTD--DEELFVIPGTPPDLLHPPKGDAFAARNKYAMQIDLEEEPPLFKVSDTHYAA 316
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 211 bits (532), Expect = 9e-54
Identities = 127/347 (36%), Positives = 191/347 (54%), Gaps = 34/347 (9%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKST------- 58
F+ +LK +FP GL K +VDG+S + KG+T G+ GESG GKS
Sbjct: 24 FLEVRDLKVHFPTDDGLVK-------SVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMG 76
Query: 59 ------FGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRM 111
+G+ R+ G I+ DG ++ D D +RKLR R M ++FQDP S+L+P
Sbjct: 77 LHTAGQYGKRKARI----SGEIWLDGTELLSADPDHVRKLRGREMAMIFQDPLSALHPYY 132
Query: 112 TIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIA 169
TI + IH + + K + VE+L+ VG+ + + + YPHE SGG QR IA
Sbjct: 133 TIGQQIVEAYRIHHKVDKKTAKR-RAVEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIA 191
Query: 170 RAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIG 229
+++ NP+ ++ DEPT+ALD++VQAQIL+L+ +LQ++F + I+HD+ V+ ++D +
Sbjct: 192 MSLVNNPELLIADEPTTALDVTVQAQILDLIRDLQKEFGSAVIVITHDLGVVAELADDLL 251
Query: 230 IMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPP 289
+MY G+ VE + E HPYT LL S P L ++ R + + G PS IN+P
Sbjct: 252 VMYGGRCVERGPAEKVFY-EPRHPYTWGLLGSMPRLDRDQQ-ERLIPVKGSPPSLINLPS 309
Query: 290 GCRFHVRCPFVTQKCKD----EEPPLVEIKKDHYVACHYPDKTREEL 332
GC F+ RCP+ D P L E+ H+ ACH + RE +
Sbjct: 310 GCAFNPRCPYADVPKDDVTRTVRPELTEVGSKHWAACHMSQEQRERI 356
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 211 bits (532), Expect = 9e-54
Identities = 116/300 (38%), Positives = 176/300 (58%), Gaps = 9/300 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLI-EPTE---GSIYFDGIDITKLD 85
V AVDG++ ++ KG+T G+ GESG GKS +L+LI EP + G I F G ++ +
Sbjct: 29 VKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEPGKVVGGEINFKGENLVTKN 88
Query: 86 KDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
+ MRK+R + ++FQ+P +SLNP T+ + IH ++E + V++L+ V
Sbjct: 89 EAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHEKL-GKKEALKRSVDMLKLV 147
Query: 145 GLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVN 202
G+ E+ + +YPHELSGG QRV IA A+ NP+ ++ DEPT+ALD+++QAQIL L+ +
Sbjct: 148 GIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIADEPTTALDVTIQAQILELMKD 207
Query: 203 LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLST 262
LQ + ++ + I+HD+ V+ D + +MY GKVVE + K HPYT LL S
Sbjct: 208 LQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVKTLFKNP-RHPYTVGLLNSL 266
Query: 263 PALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
P ++ G VPSP ++P GCRF RCPF + CK+ P L + + + C
Sbjct: 267 PRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDICKERLPDLETDENGNQIRC 326
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 211 bits (532), Expect = 9e-54
Identities = 124/329 (37%), Positives = 183/329 (54%), Gaps = 18/329 (5%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
MK + LK YF G V +V+G+S ++ GET + GESGCGKS
Sbjct: 1 MKKDTLLSVRELKTYFYTESGA-------VPSVNGVSFEVKHGETVAVVGESGCGKSVTS 53
Query: 61 RLLLRLIEP----TEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYD 115
++ L+ G I F+G D+T + + E RKLR + ++FQ+P +SLNP TI +
Sbjct: 54 LSIMGLVRSPGKIVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGN 113
Query: 116 TLKRPLEIHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAII 173
L + H+ EE K K +E+L+ VG+ E+ YPH+LSGG QRV IA A+
Sbjct: 114 QLGEVILQHQQVTKEEAK-QKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALA 172
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P ++ DEPT+ALD+++QAQIL L+ L ++ + L I+HD+ V+ M+D + +MY
Sbjct: 173 CEPKLLIADEPTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYA 232
Query: 234 GKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRF 293
G+VVE + HPYT LL STP +H S + + G VP+ +P GCRF
Sbjct: 233 GQVVEQADVFTLFATPA-HPYTQGLLASTPNIHASGEKLQSI--EGTVPTHETMPKGCRF 289
Query: 294 HVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
RC T++C +EPPL++ + +V C
Sbjct: 290 FPRCLHATEQCVHQEPPLMKTGRGQHVRC 318
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 210 bits (530), Expect = 2e-53
Identities = 127/310 (40%), Positives = 182/310 (57%), Gaps = 19/310 (6%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE- 68
ENL F R G+ V AVD +S+++ KGE + GESGCGKST ++RLI+
Sbjct: 7 ENLTTIFRTRRGV-------VRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRLIDY 59
Query: 69 PTE---GSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
P E G I FDG+D+ L +EMR++R ++G+VFQDP +SL+P I D + + H
Sbjct: 60 PGEISGGKIIFDGVDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIGDQISETIMEH 119
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+ +++E + E+LE VGL E + YPH+LSGGQ QRV IA AI NP ++ DEP
Sbjct: 120 -MDVTKKEAWQMAREMLEKVGLQPERVDSYPHQLSGGQRQRVMIAMAISLNPKLLIADEP 178
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
T+ALD+ VQ +I++LL +++R+ + I+HD ++ SDRI +MY G +VE+ +
Sbjct: 179 TTALDVIVQEKIMDLLEDMKRE-GRAVMLITHDFALAAERSDRIAVMYAGWLVELGKAEK 237
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
E HPYT L+ S P + K L G P IN P GCRF RC +++C
Sbjct: 238 L-TNEPLHPYTKGLIQSVPDVWMDKEIKP---LPGFPPDLINPPEGCRFRPRCSEASKRC 293
Query: 305 KDEEPPLVEI 314
+EPP E+
Sbjct: 294 M-KEPPEFEV 302
>pir||A72284 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981747|gb|AAD36271.1|AE001776_7 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 319
Score = 210 bits (530), Expect = 2e-53
Identities = 125/325 (38%), Positives = 190/325 (58%), Gaps = 14/325 (4%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+D ++ +NL K + + LF+ K + AVD +S ++++ E F LAGESGCGKST ++
Sbjct: 1 MEDTLILKNLTKVYSIGSLLFRSK---ITAVDDVSFSLKRAEIFTLAGESGCGKSTTAKM 57
Query: 63 LLRLIEPTEGSIYFDGIDIT---KLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKR 119
+L EPT G I F+G I K KD +RK++ VFQ+P S NP +T+ D
Sbjct: 58 ILGFEEPTSGDIIFEGNSIQWWKKRKKDFLRKVQA----VFQNPFESFNPLLTVDDIFFE 113
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLS-RYPHELSGGQLQRVSIARAIITNPDF 178
+ + LA S E I E L+ VGL E ++ RY ELSGGQLQR SIAR++++NP
Sbjct: 114 TVMNYGLANSRNEAEKLIDEKLQLVGLKFEDINGRYQSELSGGQLQRASIARSLLSNPSL 173
Query: 179 VVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
++ DEP S +D S++ I+NL L+ + ++ ++I+HD++ Y+SDRI IM+ G +VE
Sbjct: 174 LIADEPVSMVDASLRMSIVNLFAKLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGNIVE 233
Query: 239 ILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCP 298
+D + HPYT L S P P K+ SR++ ++ + + GC+F RCP
Sbjct: 234 TGPVDKVLI-DPKHPYTQLLRESIPDPDPEKKWSREITVS-DTEYEEYLKEGCKFAGRCP 291
Query: 299 FVTQKCKDEEPPLVEIKKDHYVACH 323
+V + C+ E+P V + V CH
Sbjct: 292 YVKEICRREKPDDV-LVDGVLVKCH 315
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 210 bits (528), Expect = 3e-53
Identities = 124/299 (41%), Positives = 178/299 (59%), Gaps = 11/299 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
V AVD +S + +GE L GESG GK+T G+L+LRL++PT G I F G DI D++++
Sbjct: 24 VRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLKPTSGRILFRGEDIWSFDREKL 83
Query: 90 RKLR-RRMGIVFQDPKSSLNPRMTI---YDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
R+ + + VFQDP +S NP + +D + R + +A E E+ K LE+VG
Sbjct: 84 RRYYYKNVQAVFQDPFASFNPLHKVDRVFDLVFRNF-LRGVAPGEREELIK--RSLESVG 140
Query: 146 LGE-EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
L E L +YPH+LSGGQLQR+ IARA++ P ++ DE S LD S + ILNLL +
Sbjct: 141 LNPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDILNLLGEFR 200
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPA 264
KF + +FI+HD+++ Y+SD+I IMY G++VE + G HPYT LL S P
Sbjct: 201 DKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERV-FGNPLHPYTRMLLESVPD 259
Query: 265 LHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
L S R K I + GCRF RCP+ ++C ++ P +EI+K+H+VAC+
Sbjct: 260 L--SVRWEFKGIEPEREEERVYEIKGCRFAPRCPYARKECYEKPPQTIEIEKNHHVACY 316
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 210 bits (528), Expect = 3e-53
Identities = 120/305 (39%), Positives = 175/305 (57%), Gaps = 7/305 (2%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+ NL K F V G +F K L A+D +S I GE F LAGESGCGK+T ++LL L
Sbjct: 3 VSVRNLTKIFRV-GSIFSLKKLV--AIDNVSFEIGSGEIFSLAGESGCGKTTTAKILLGL 59
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
EPT G + +DGI + ++EM L++ + V Q+P S+ NP + D L + + ++
Sbjct: 60 EEPTNGEVLYDGIKLKDFVENEMHFLKK-VQTVQQNPFSTFNPFRKVEDYLFKTVLRFKM 118
Query: 127 AESEEEKYDKIVEILEAVGLG-EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
A +++E I E L VGL +E RYP E SGGQLQR+SIARA++TNP F+V DEP
Sbjct: 119 ANTKDEALRLIEEKLSVVGLNFDEIKGRYPSEFSGGQLQRISIARALLTNPSFLVADEPV 178
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
S +D S++ I+NL +L+ +F ++ L+I+HD+S Y++D++ IM+ G +VE+ D
Sbjct: 179 SMIDASLRISIVNLFRDLKERFGISILYITHDLSTAYYVADKLAIMFRGSIVEMGRAQDI 238
Query: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
+HPYT L S P P + L+ GC+F RCP V C+
Sbjct: 239 LDTP-FHPYTKLLKSSIPVPDPEYEWDENINLSSTEREEF-FAKGCKFASRCPEVMSICR 296
Query: 306 DEEPP 310
+ PP
Sbjct: 297 ESVPP 301
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 210 bits (528), Expect = 3e-53
Identities = 122/318 (38%), Positives = 181/318 (56%), Gaps = 14/318 (4%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL+ Y+ G YV AVDG+S + +GE FG+AGESGCGKST L+ P
Sbjct: 8 NLRVYYRTPVG-------YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
Query: 71 E---GSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
E GS F G D+ L +DE+RK++ + I+ Q ++LNP I D + H
Sbjct: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
A+ E + + + E L V L YP ELSGG QR ++ + + NPD ++ DE TS
Sbjct: 121 ADRREVE-ELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
Query: 187 ALDISVQAQILNLLVN-LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
ALD++ Q ++ LL + +Q + +F++HD+++L+ ++DR+ +MY GKVVEI +++
Sbjct: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
Query: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
+ HPYT LL S P + + R + G S +N P GCRF+ RCPF + C+
Sbjct: 240 LENPA-HPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
Query: 306 DEEPPLVEIKKDHYVACH 323
D EP LV++ +DHY ACH
Sbjct: 299 DVEPKLVKVGRDHYAACH 316
>pir||C82442 probable peptide ABC transporter, ATP-binding protein VCA0588
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9657999|gb|AAF96490.1| (AE004389) peptide ABC
transporter, ATP-binding protein, putative [Vibrio
cholerae]
Length = 530
Score = 210 bits (528), Expect = 3e-53
Identities = 108/259 (41%), Positives = 166/259 (63%), Gaps = 3/259 (1%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M + E L+ +FP++GG F++ Y+ AV +S + KG++ GL GESG GKST G
Sbjct: 270 MDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTG 329
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
+L+L+ ++G+I F G D+ L + EM R +M +VFQDP S+LNPRM++ +
Sbjct: 330 MAILKLLA-SQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEG 388
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
L +H +E + I +++ VGL + RYP+E SGGQ QR++IARA++ P+F++
Sbjct: 389 LRVHSQLNDDEIDH-AICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFIL 447
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
LDEPTS+LD +VQAQ+L+LL +LQ+K+ LTYLFISHD++V++ + +M G++VE
Sbjct: 448 LDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHG 507
Query: 241 SIDDFRKGEIYHPYTAYLL 259
+ HPYT L+
Sbjct: 508 ETQSLFENP-SHPYTQQLV 525
Score = 169 bits (424), Expect = 4e-41
Identities = 97/238 (40%), Positives = 145/238 (60%), Gaps = 10/238 (4%)
Query: 34 DGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP-----TEGSIYFDGIDITKLDKDE 88
+G+S+ I +GET L GESG GKS +LRL+ GSI+F +D + +
Sbjct: 26 EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDVDTLRCSERA 85
Query: 89 MRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG 147
+R +R R+G++FQ+P SLNP I L L IHR + + K +E L VG+
Sbjct: 86 LRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAE-QKAIEWLGKVGIR 144
Query: 148 --EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQR 205
E ++ YPHELSGG+ QRV IA A+I P+ ++ DEPT+ALD+SVQAQIL+LL +LQ+
Sbjct: 145 HPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQQ 204
Query: 206 KFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+ + LFI+HD+S+++ ++DR+ +M G++VE + HPYT L+ + P
Sbjct: 205 ELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPA-HPYTQQLINADP 261
>sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV1281C
>gi|7445626|pir||A70756 probable ABC-type peptide
transport protein - Mycobacterium tuberculosis (strain
H37RV) >gi|1480305|emb|CAB00901.1| (Z77137) oppD
[Mycobacterium tuberculosis]
Length = 612
Score = 209 bits (526), Expect = 4e-53
Identities = 111/259 (42%), Positives = 164/259 (62%), Gaps = 3/259 (1%)
Query: 12 LKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE 71
+K Y +G + ++ V AVDGIS+ +R+G T G+ GESG GKST +L L P
Sbjct: 356 VKTYRLAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQS 415
Query: 72 GSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
GSI G D+ L E R LRR + +VFQDP +SL+PR+ ++D + PL+ + ++E
Sbjct: 416 GSIEVLGTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKNET 475
Query: 132 EKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
+ ++ E+L+ VGL SRYP E SGGQ QR+ IARA+ P + LDEP SALD+S
Sbjct: 476 --HARVAELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 533
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
+QA I+NLL++LQ +F L+YLF+SHD+SV+++++ ++ +M G VVE ++ G
Sbjct: 534 IQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEV-FGNPK 592
Query: 252 HPYTAYLLLSTPALHPSKR 270
H YT LL + P P++R
Sbjct: 593 HEYTRRLLGAVPQPDPARR 611
Score = 196 bits (493), Expect = 3e-49
Identities = 116/299 (38%), Positives = 171/299 (56%), Gaps = 8/299 (2%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP---TEGSIYFDGIDITKLDK 86
V AV GIS + GE + GESG GKS ++ L+ GS+ G ++ L
Sbjct: 21 VTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQVRGSVRLQGTELLGLAD 80
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
+ M + R + +G VFQDP S+L P T+ D + +E+H+ ++ + VE+L+ VG
Sbjct: 81 NAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPRVGKKAARRRAVELLDLVG 140
Query: 146 LGE-EHLSR-YPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ + + SR +PHELSGG+ QRV IA AI +PD ++ DEPT+ALD++VQAQIL++L
Sbjct: 141 ISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLKAA 200
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+ L I+HD+ V+ +DR +MY G+VVE ++D + + PYT LL S P
Sbjct: 201 RDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDLYR-DRRMPYTVGLLGSVP 259
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
L ++ T R V + G PS + PGC F RCP V +C EP L+++ DH AC
Sbjct: 260 RLDAAQGT-RLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLTAEPELLDVATDHRAAC 317
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 209 bits (526), Expect = 4e-53
Identities = 112/293 (38%), Positives = 169/293 (57%), Gaps = 3/293 (1%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
V AV +S ++ GE FG+ GESGCGKST RLL L +P G I F G +++ L +
Sbjct: 302 VKAVRDVSFTVKAGENFGIVGESGCGKSTLTRLLAWLEQPNAGRIAFLGKNLSNLSARSL 361
Query: 90 RKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEE 149
++R+ ++ QDP SL M+I ++ PL IH +A + E+ + E + VGL +
Sbjct: 362 TEMRKSFQLLLQDPYGSLPAGMSIIRMIEEPLLIHGVARRDAEQ--RAQEAMREVGLHAD 419
Query: 150 HLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNL 209
R P LS GQ QR++IARA++ P ++LDE SALD QA++L+L LQ
Sbjct: 420 LAERLPVGLSAGQRQRINIARALVLKPRLLILDETLSALDQVEQAELLDLFKRLQAAHGF 479
Query: 210 TYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSK 269
+Y+FISHD+++++ + R+ +MYLG++VE+ + +HPYT LL + P L ++
Sbjct: 480 SYIFISHDLALVRRICHRVAVMYLGRIVELADNKTLFE-HPHHPYTRALLSAMPTLEENR 538
Query: 270 RTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
+ +L GE PSPI++P GC F RCP C+ +P L +Y AC
Sbjct: 539 FPGAQYLLDGEPPSPIHLPVGCSFRSRCPRAQSDCEKTDPMLEGSDGGNYAAC 591
Score = 123 bits (306), Expect = 3e-27
Identities = 76/241 (31%), Positives = 126/241 (51%), Gaps = 10/241 (4%)
Query: 33 VDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLDKDE 88
VD + ++ GE GL GE+G GKS R ++ I+ + G + F+G D+ LD
Sbjct: 25 VDNVDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQAPLDISSGQVIFEGKDVLSLDARG 84
Query: 89 MRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG 147
+R +R R+G + +P SL+PR+ I + L R + E +K++++L V +
Sbjct: 85 LRSIRGNRIGFIGANPMGSLDPRLPIGHQIVEKLRSVRPDIGKAEAKEKVLDLLGRVHIP 144
Query: 148 EEHLSRY---PHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
SR+ P + SGG +QRV I A+++ P V+ D T LD++V AQI+ L+ NL+
Sbjct: 145 SPR-SRFHEAPFQFSGGMMQRVMIVDALVSEPSLVIADNITQPLDVTVAAQIIRLIDNLR 203
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPA 264
+ +LFIS + V+ +++R +M G++VE D YT LL P+
Sbjct: 204 ESLDTAFLFISSSLPVVSKIAERTLVMQGGRIVEQGETADIAANP-QQAYTRALLSRIPS 262
Query: 265 L 265
+
Sbjct: 263 I 263
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 209 bits (526), Expect = 4e-53
Identities = 123/322 (38%), Positives = 189/322 (58%), Gaps = 16/322 (4%)
Query: 22 LFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-----EGSIYF 76
+F+ + ++ AVDGIS++I GET G+ GESG GKS R ++ L++ E SI F
Sbjct: 27 VFRTDHEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDAPGEVLPESSIVF 86
Query: 77 DGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD 135
DG ++T+L D+ +++R +G++FQDP SLNP T+ + ++ L I+R + +E D
Sbjct: 87 DGTELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTVGNQIREALRINR-GITGQEATD 145
Query: 136 KIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQ 193
+++LE V + E L YP+E SGG QR IA + +PD ++ DEPT+ALD+++Q
Sbjct: 146 VAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDVLICDEPTTALDVTIQ 205
Query: 194 AQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHP 253
AQI+ LL ++Q + +L LFI+HD+ V+ +SDR+ +MY G+ VE +++ HP
Sbjct: 206 AQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVMYAGEFVEKAPVEELFANP-KHP 264
Query: 254 YTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVE 313
YT LL + P S R + G+VP+P CRF RCP + C + P V
Sbjct: 265 YTQGLLDAIPG--TSVDDERLNTIEGDVPTPNQPATDCRFAPRCPKAFEDCTEVHPTHVS 322
Query: 314 IK--KDHYVAC-HYPD-KTREE 331
+ DH AC YP+ K+R E
Sbjct: 323 VSDTHDHSTACLLYPEGKSRTE 344
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 208 bits (524), Expect = 8e-53
Identities = 120/329 (36%), Positives = 189/329 (56%), Gaps = 13/329 (3%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-----EGSIYFD 77
FK V A+ G++ ++ KGET + GESG GKS + +++LI G I F+
Sbjct: 17 FKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPGYFKRGEILFE 76
Query: 78 GIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
G D+ L + EM+ +R + +G++FQDP +SLNP M + + L H E K +
Sbjct: 77 GKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAK-KR 135
Query: 137 IVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
VE+LE VG+ E+ ++++PHE SGG QRV IA A+ NP ++ DEPT+ALD+++QA
Sbjct: 136 AVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPTTALDVTIQA 195
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
QIL L+ +LQ+K + + +FI+HD+ V+ ++DR+ +MY G++VE ++D+ + HPY
Sbjct: 196 QILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEIFY-DPRHPY 254
Query: 255 TAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
T LL S P L S I G P N P G F +R + + ++EPP+ ++
Sbjct: 255 TWGLLASMPTLESSGEEELTAI-PGTPPDLTNPPKGDAFALRSSYAMKIDFEQEPPMFKV 313
Query: 315 KKDHYVACH--YPDKTREELGPLVREKLK 341
HYV +PD + E V+ K++
Sbjct: 314 SDTHYVKSWLLHPDAPKVEPPEAVKAKMR 342
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 208 bits (524), Expect = 8e-53
Identities = 120/329 (36%), Positives = 189/329 (56%), Gaps = 13/329 (3%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-----EGSIYFD 77
FK V A+ G++ ++ KGET + GESG GKS + +++LI G I F+
Sbjct: 17 FKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPGYFKRGEILFE 76
Query: 78 GIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
G D+ L + EM+ +R + +G++FQDP +SLNP M + + L H E K +
Sbjct: 77 GKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAK-KR 135
Query: 137 IVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
VE+LE VG+ E+ ++++PHE SGG QRV IA A+ NP ++ DEPT+ALD+++QA
Sbjct: 136 AVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPTTALDVTIQA 195
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
QIL L+ +LQ+K + + +FI+HD+ V+ ++DR+ +MY G++VE ++D+ + HPY
Sbjct: 196 QILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEIFY-DPRHPY 254
Query: 255 TAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
T LL S P L S I G P N P G F +R + + ++EPP+ ++
Sbjct: 255 TWGLLASMPTLESSGEEELTAI-PGTPPDLTNPPKGDAFALRSSYAMKIDFEQEPPMFKV 313
Query: 315 KKDHYVACH--YPDKTREELGPLVREKLK 341
HYV +PD + E V+ K++
Sbjct: 314 SDTHYVKSWLLHPDAPKVEPPEAVKAKMR 342
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 208 bits (524), Expect = 8e-53
Identities = 120/303 (39%), Positives = 171/303 (55%), Gaps = 5/303 (1%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
V AVDG+S I +GE L GESG GK+T G+L+LRL+ PT G I F+G DI K K E+
Sbjct: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
Query: 90 RKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGE 148
+ R++ VFQDP +S NP + + + EE+ + I + LE VGL
Sbjct: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
Query: 149 EHL-SRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
+ +YPH+LSGGQLQR+ IARA++ P ++ DE S LD S + +LNLL + K+
Sbjct: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHP 267
+ LFI+HD+++ Y+SD IMY G +VE+ + + HPYT LL S P L
Sbjct: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPL-HPYTKMLLESVPDL-- 258
Query: 268 SKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDK 327
+ + K I + + GCR+ RCP C P L+E++K+H+VACH
Sbjct: 259 NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQS 318
Query: 328 TRE 330
+RE
Sbjct: 319 SRE 321
>dbj|BAA15129.1| (D90788) Dipeptide transport ATP-binding protein DppF. [Escherichia
coli]
Length = 262
Score = 207 bits (522), Expect = 1e-52
Identities = 114/258 (44%), Positives = 158/258 (61%), Gaps = 16/258 (6%)
Query: 48 LAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSL 107
+ GESGCGKST +LL+ +++P+ G G +R M +VFQDP SSL
Sbjct: 1 IVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------------QRIMQMVFQDPLSSL 47
Query: 108 NPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVS 167
NPR+ ++ + PL I + + SE+++ E+ VG+ E+L R PH SGGQ QR++
Sbjct: 48 NPRLPVWRIITEPLWIAKRS-SEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIA 106
Query: 168 IARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDR 227
IARA+ + PD +VLDEPTSALDISVQAQILNLLV LQ LTY+ ISH++SV+++MSDR
Sbjct: 107 IARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDR 166
Query: 228 IGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINV 287
+ +MYLG++VE+ HPYT LL S PA+ + T ++P +
Sbjct: 167 VAVMYLGQIVELGDAQQVLTAPA-HPYTRLLLDSLPAIDKPLEEEWALRKT-DLPGNRTL 224
Query: 288 PPGCRFHVRCPFVTQKCK 305
P GC F+ RCP T C+
Sbjct: 225 PQGCFFYERCPLATHGCE 242
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 207 bits (522), Expect = 1e-52
Identities = 126/329 (38%), Positives = 187/329 (56%), Gaps = 17/329 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ I +NLK Y+ + L+ K + V AVD +S++I E +G+AGESGCGKST +
Sbjct: 1 METLISGKNLKAYYVL--DLWGSKKV-VKAVDNVSLDILPNEIYGIAGESGCGKSTLLKA 57
Query: 63 LLRLIEPT----EGSIYFD----GIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTI 113
LL L++P +G + ++ ++T L + +RKLR + + Q LNP +
Sbjct: 58 LLALLDPPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRV 117
Query: 114 YDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAII 173
DT L H + + +E D V+ L+ +GL E L+ +PH+LSGG QRV+IA A +
Sbjct: 118 RDTFIEILSSH-VKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVTIALATV 176
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P + DEPT+ALD+ Q ++ L+ +Q T + ++HD+ V ++ R+ IMY
Sbjct: 177 LKPRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYA 236
Query: 234 GKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRF 293
GK+VE + K + HPYT YL+ S PA+ K S + G PS + PPGCRF
Sbjct: 237 GKIVEEGPTLEIFKNPL-HPYTRYLIQSLPAIGDKKLRSG---IPGSPPSLVAPPPGCRF 292
Query: 294 HVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
H RCP +Q+C++EEP L EIK H VAC
Sbjct: 293 HPRCPHASQRCREEEPLLKEIKPGHKVAC 321
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 206 bits (519), Expect = 3e-52
Identities = 130/330 (39%), Positives = 185/330 (55%), Gaps = 27/330 (8%)
Query: 3 MKDFIVTE--NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M+D ++ E NLK YF + G+ K AVDG+++ + KGE GLAGESG GKST G
Sbjct: 1 MRDRMLLEVRNLKVYFYTKRGIVK-------AVDGVNLYLDKGEIVGLAGESGSGKSTIG 53
Query: 61 RLLLRLI----EPTEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIY 114
++RL+ + G I F G +I KLD++ RK R ++ +VFQ S P I
Sbjct: 54 YAIMRLVPFPGKIESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIK 113
Query: 115 DTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIIT 174
D + L IH EE+ I E+ + V + + +YPHELSGGQ QR IA A+
Sbjct: 114 DQIIEVLRIHGWNGDYEER---IKELFKMVNMDPQLAEKYPHELSGGQKQRAFIAMALAL 170
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
NP+ ++ DEPT+ALD+ VQ ILNLL L+++ NL+ +FI+HD+++L +SDR +Y G
Sbjct: 171 NPEVLIADEPTTALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYAG 230
Query: 235 KVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVI--LTGEVPSPINVPPGCR 292
KV+E + K + HPYT+ L+ S L + +I + G +P + P GCR
Sbjct: 231 KVMESGPSEVIFK-KPRHPYTSLLIESIATL------DKDIIKGIPGAMPDLSSPPLGCR 283
Query: 293 FHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
F+ RCPF C EEP + VAC
Sbjct: 284 FNTRCPFARDICFKEEPKMKTFSDGDEVAC 313
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 206 bits (519), Expect = 3e-52
Identities = 122/319 (38%), Positives = 182/319 (56%), Gaps = 16/319 (5%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL+ Y+ G +V AVDG+S ++KGE FG+AGESGCGKST L+ P
Sbjct: 8 NLRIYYSTPRG-------FVKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSLILRKPPM 60
Query: 71 E---GSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
G F G D+ KL ++E RK++ + + I+ Q ++LNP I D + H +
Sbjct: 61 THKGGKAIFKGKDLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIVWDLAREHGM 120
Query: 127 AESEE-EKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+ +E EK K E L V L + YP ELSGG QR ++ + + NPD ++ DE T
Sbjct: 121 QDKKEVEKLLK--ERLSMVKLSPKVAEMYPVELSGGMRQRATMVVSTLLNPDLLIADEVT 178
Query: 186 SALDISVQAQILNLLVN-LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
SALD++ Q ++ LL + ++ + +F++HD+++L+ ++DR+ IMY GKVVEI S+++
Sbjct: 179 SALDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVVEIGSMEE 238
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKC 304
+ HPYT LL S P + + R + G S +N P GCRF+ RCP+ Q C
Sbjct: 239 VLESPA-HPYTQLLLNSLPRMGVHYKRERLRGIPGYPISLLNPPEGCRFYTRCPYAMQVC 297
Query: 305 KDEEPPLVEIKKDHYVACH 323
++ EP LVE+ HY ACH
Sbjct: 298 REVEPELVEVSPGHYAACH 316
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 206 bits (519), Expect = 3e-52
Identities = 121/318 (38%), Positives = 180/318 (56%), Gaps = 14/318 (4%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL+ Y+ G YV AVDG+S + +GE FG+AGESGCGKST L+ P
Sbjct: 8 NLRVYYRTPVG-------YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
Query: 71 E---GSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
E GS F G D+ L +DE+RK++ + I+ Q ++LNP I D + H
Sbjct: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
A+ E + + + E L V L YP ELSGG QR ++ + + NPD ++ DE TS
Sbjct: 121 ADRREVE-ELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
Query: 187 ALDISVQAQILNLLVN-LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
ALD++ Q ++ LL + +Q + +F++HD+++L+ ++DR+ +MY GKVVEI +++
Sbjct: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
Query: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
+ HPYT LL S P + + R + G S +N P GCRF+ RCPF + C
Sbjct: 240 LENPA-HPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCPFAMEHCP 298
Query: 306 DEEPPLVEIKKDHYVACH 323
+ EP LV++ K+HY ACH
Sbjct: 299 EVEPKLVKVGKEHYAACH 316
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 206 bits (518), Expect = 4e-52
Identities = 125/339 (36%), Positives = 183/339 (53%), Gaps = 25/339 (7%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ + +NL F GG V AV G+S ++ KGETF + GESGCGKS +
Sbjct: 1 MEKVLSVQNLHVSFTTYGGT-------VQAVRGVSFDLYKGETFAIVGESGCGKSVTSQS 53
Query: 63 LLRLIEP-----TEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDT 116
++ L+ P T+G I F D+ +L EMR +R + ++FQDP ++LNP +T+ D
Sbjct: 54 IMGLLPPYSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQ 113
Query: 117 LKRPLEIHRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIIT 174
L L H+ S++ +++ +L VG+ + E L +YPH+ SGG QR+ IA A+I
Sbjct: 114 LGEALLRHKKM-SKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALIC 172
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
PD ++ DEPT+ALD+++QAQIL L +QRK +++ + I+HD+ V+ ++DR+ +MY G
Sbjct: 173 EPDILIADEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAG 232
Query: 235 KVVEILSIDDFRKGEIY---HPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGC 291
K+ EI RK Y HPYT LL S P L + + G P + PPGC
Sbjct: 233 KMAEI----GTRKDIFYQPQHPYTKGLLGSVPRL--DLNGAELTPIDGTPPDLFSPPPGC 286
Query: 292 RFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDKTRE 330
F RCP C P H V C D+ E
Sbjct: 287 PFAARCPNRMVVCDRVYPGQTIRSDSHTVNCWLQDQRAE 325
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 206 bits (518), Expect = 4e-52
Identities = 116/312 (37%), Positives = 179/312 (57%), Gaps = 12/312 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSI-----YFDGIDITKL 84
V AVDG+S+ + +GE G+ GESGCGKS +++L+ G I YF G D+ ++
Sbjct: 22 VPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPGKIMSGHVYFKGEDLVQV 81
Query: 85 DKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEA 143
M+++R + ++FQ+P +SLNP TI + L + HR +E + + V +LE
Sbjct: 82 SPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRKMTKQEAR-KQAVTMLER 140
Query: 144 VGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLV 201
VG+ +E S YPH+LSGG QRV IA A+ +P ++ DEPT+ALD+++QAQIL+L+
Sbjct: 141 VGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPTTALDVTIQAQILDLMR 200
Query: 202 NLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLS 261
+L + L I+HD+ V+ + +R+ +MY G+VVE + K HPYT LL S
Sbjct: 201 HLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMILK-HPKHPYTKGLLKS 259
Query: 262 TPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVA 321
P +H +++ R + G VP P V GCRF RC ++CK P L ++ H
Sbjct: 260 LPKIH--EQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTAPQLQQVATGHQCR 317
Query: 322 CHYPDKTREELG 333
C ++ +E+G
Sbjct: 318 CFLYEERGDEVG 329
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 205 bits (517), Expect = 5e-52
Identities = 118/319 (36%), Positives = 184/319 (56%), Gaps = 13/319 (4%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT-----EGSIYFD 77
FK V A+ G++ ++ KGET + GESG GKS + +++LI G I F+
Sbjct: 17 FKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPGYFKRGEILFE 76
Query: 78 GIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
G D+ L + EM+ +R + +G++FQDP +SLNP M + + L H E K +
Sbjct: 77 GKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAK-KR 135
Query: 137 IVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
VE+LE VG+ E+ ++++PHE SGG QRV IA A+ NP ++ DEPT+ALD+++QA
Sbjct: 136 AVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPTTALDVTIQA 195
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
QIL L+ +LQ+K + + +FI+HD+ V+ ++DR+ +MY G++VE ++D+ + HPY
Sbjct: 196 QILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEIFY-DPRHPY 254
Query: 255 TAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
T LL S P L S I G P N P G F +R + + ++EPP+ ++
Sbjct: 255 TWGLLASMPTLESSGEEELTAI-PGTPPDLTNPPKGDAFALRSSYAMKIDFEQEPPMFKV 313
Query: 315 KKDHYVACH--YPDKTREE 331
HYV +PD + E
Sbjct: 314 SDTHYVKSWLLHPDAPKVE 332
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 205 bits (515), Expect = 9e-52
Identities = 114/296 (38%), Positives = 182/296 (60%), Gaps = 15/296 (5%)
Query: 33 VDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP---TEGSIYFDGIDITKLDKDEM 89
+D ++++I +GE L GES GKST G+++ R++ P T G + DG+D+ KL + EM
Sbjct: 22 IDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLPPVGITSGEVVLDGVDVLKLSEKEM 81
Query: 90 RKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR----LAESEEEKYDKIVEILEAV 144
K+R + ++FQ+P +SLNP I + L L I + + EE ++++ LE++
Sbjct: 82 TKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIRNSRMNIQMTFEEARKEVIKALESL 141
Query: 145 GLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVN 202
L E+ L RYPHELSGGQ+QRV I A++ P ++ DEPT+ALD+++QAQ++ LL +
Sbjct: 142 RLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKLLIADEPTTALDVTIQAQVVKLLKD 201
Query: 203 LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLST 262
L R +T +FI+HD+ + +SDR+ + Y G+V+E + K + HPYT+ LL S
Sbjct: 202 LNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVMEQGQTVEIVKNPL-HPYTSGLLASI 260
Query: 263 PALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDH 318
P+ K + + + G PS +++P GC+F RC F ++C +EEP IKKD+
Sbjct: 261 PS--SPKHSGKLYSIPGYPPSYLSLPKGCKFAPRCRFAFERCFEEEPSY--IKKDN 312
>sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YEJF
>gi|7445954|pir||C64987 probable oligopeptide transport
protein yejF - Escherichia coli
>gi|405909|gb|AAA16379.1| (U00008) yejF [Escherichia
coli] >gi|1788506|gb|AAC75241.1| (AE000307) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 529
Score = 204 bits (514), Expect = 1e-51
Identities = 106/229 (46%), Positives = 152/229 (66%), Gaps = 1/229 (0%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
E L+ FP+R G+ K+ + V IS +R GET GL GESG GKST G LLRLI
Sbjct: 279 EQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLIN- 337
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
++GSI FDG + L++ ++ +R R+ +VFQDP SSLNPR+ + ++ L +H+ S
Sbjct: 338 SQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLS 397
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
++ +++ ++ VGL E RYP E SGGQ QR++IARA+I P ++LDEPTS+LD
Sbjct: 398 AAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
+VQAQIL LL +LQ+K L YLFISHD+ V++ + ++ I+ G+VVE
Sbjct: 458 KTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVE 506
Score = 159 bits (397), Expect = 6e-38
Identities = 96/253 (37%), Positives = 145/253 (56%), Gaps = 10/253 (3%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL-----IEPTEGSIYFD 77
F+ + V+ +S+ I GET L GESG GKS +LRL +E G I F
Sbjct: 15 FRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFH 74
Query: 78 GIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
G + +R +R ++ ++FQ+P SLNP T+ L L +HR E + +
Sbjct: 75 GESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-GE 133
Query: 137 IVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
I+ L+ VG+ + + L+ YPH+LSGG+ QRV IA A++T P+ ++ DEPT+ALD+SVQA
Sbjct: 134 ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
QIL LL LQ + N+ LFI+H++S+++ ++ R+ +M G+ VE + HPY
Sbjct: 194 QILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVE-QNYAATLFASPTHPY 252
Query: 255 TAYLLLSTPALHP 267
T LL S P+ P
Sbjct: 253 TQKLLNSEPSGDP 265
>pir||A72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981772|gb|AAD36294.1|AE001778_15 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 315
Score = 204 bits (514), Expect = 1e-51
Identities = 123/314 (39%), Positives = 184/314 (58%), Gaps = 11/314 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+NL K FP+ G F ++ L AVD +S I + L GESG GK+T G+L+L+LI P
Sbjct: 7 QNLTKEFPL--GFFGKERL--KAVDDVSFEIERSRIVSLIGESGSGKTTVGKLILKLIRP 62
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
+ G I +G DIT++ E+R+ R++ VFQDP SS NP I L E
Sbjct: 63 SSGQILLNGRDITQIKGRELREYYRKVQGVFQDPFSSFNPIYKIDRVLDMVFEEFFPDTP 122
Query: 130 EEEKYDKIVEILEAVGLG-EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
E+ K+ E++ +VG+ E L +YPH+LSGGQLQR+ IAR ++ N + ++ DE S L
Sbjct: 123 ASERRTKMEEVIASVGMNPREILGKYPHQLSGGQLQRILIARTLLLNVELLIADEIISML 182
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D S + ILNLL +L R+ ++ +FI+HD+S+ Y+SD IMY G +VE+ +
Sbjct: 183 DASTRVDILNLLGDL-RERGMSVIFITHDLSLGYYISDETFIMYRGNIVEMGDTEKVFHN 241
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEE 308
I HPYT LL S P + S++ I E+ S N P C+++ RCP ++C ++
Sbjct: 242 PI-HPYTKMLLESVPEIDRKWDLSKRFI--PELVSSSNAP--CKYYDRCPIRDERCLVQK 296
Query: 309 PPLVEIKKDHYVAC 322
P +VE++++H V C
Sbjct: 297 PAMVEVEENHKVLC 310
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 204 bits (513), Expect = 1e-51
Identities = 118/330 (35%), Positives = 186/330 (55%), Gaps = 19/330 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ + +NLK Y+ + F K + AVD +S+ I GE +G+AGESGCGKST +
Sbjct: 1 METLVEGKNLKAYYVLE---FWGKKRTIRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKT 57
Query: 63 LLRLIEPT------EGSIYFDG--IDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTI 113
LL +EP E + + D +++ L ++E R+L+ R + + Q LNP I
Sbjct: 58 LLANLEPPLRLFGGELNYWLDSKPVNVVSLKEEERRRLKWRFISYIPQGSMHVLNPVKRI 117
Query: 114 YDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAII 173
DT L+ H + +E + +E L+A+GL L +PH+LSGG QRV+IA A +
Sbjct: 118 RDTFMEILKSH-VRRQKETFLEMAIEHLKALGLPSRVLDMFPHQLSGGMRQRVTIALATL 176
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P ++ DEPT+ALD+ Q ++ L+ +Q++ T + ++HD+ + ++ R+ IMY
Sbjct: 177 LKPRIILADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQVTTRMAIMYA 236
Query: 234 GKVVEI-LSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCR 292
GK+VE +++ F+ E HPYT YL+ S P + + + G PS ++ P GCR
Sbjct: 237 GKIVEEGPTLEIFK--EPLHPYTRYLIQSLPRVGDKQLREG---IPGSPPSLVSPPSGCR 291
Query: 293 FHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
FH RCP TQ+C++EEP +E+ H AC
Sbjct: 292 FHPRCPHATQRCEEEEPVFLEVNPGHRAAC 321
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 203 bits (511), Expect = 3e-51
Identities = 117/291 (40%), Positives = 175/291 (59%), Gaps = 9/291 (3%)
Query: 29 YVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLD 85
YV AVDG+S +I++GE G+AGESGCGKST G L+ L P + G DG +I L
Sbjct: 24 YVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLILLKPPMKYMGGEAILDGKNIMALS 83
Query: 86 KDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
E+RK+R ++ I+ Q ++NP I + L H ES E K D I E LE V
Sbjct: 84 PKELRKVRYEKISIIPQYAMDAMNPTKKIKQIIDDLLHEH--GESFERKKDVIEERLEIV 141
Query: 145 GLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
LG++ L+ YP ELSGG QR+ + + + NPD ++ DE TSALD+S Q ++ +L ++
Sbjct: 142 NLGKKVLNMYPIELSGGMKQRMVMVISTLMNPDVLIADEITSALDVSSQRSVIQMLYEMR 201
Query: 205 RKFNLTYL-FISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
K + L FI+HD+SVL ++D++ ++Y G+V EI ++D + E HPYT LL S P
Sbjct: 202 EKEIMGSLAFITHDLSVLYQIADKVMVLYAGRVAEISPMEDIIQ-EPLHPYTKMLLSSLP 260
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
+ ++ + G PS +N+ PGCRF RCP+ +KC +++PP+ ++
Sbjct: 261 KIGVRYSQTKLKGIPGYPPSLLNIGPGCRFRDRCPYAFEKC-EQDPPVFDV 310
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 202 bits (508), Expect = 6e-51
Identities = 107/253 (42%), Positives = 162/253 (63%), Gaps = 2/253 (0%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
E+++ F V+ ++N Y AV GIS+ +++GET G+ GESG GKST GR L+ L+ P
Sbjct: 280 EDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-P 338
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
+ G I F G D L + + L++ + +VFQDP SL+PRMT+ + + L +H+ S
Sbjct: 339 STGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHIS 398
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
+ E+ + LE V L ++RYPHE SGGQ QR++IARA+I P F++LDEPTSALD
Sbjct: 399 KLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALD 458
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE 249
SVQ ++ LL +Q++ N+ YLFISHD++V++ +SDR+ +M G+V+E S +
Sbjct: 459 RSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNP 518
Query: 250 IYHPYTAYLLLST 262
H YT L+ ++
Sbjct: 519 -QHEYTKKLIAAS 530
Score = 166 bits (416), Expect = 4e-40
Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 19/272 (6%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M + NL F G+ V AV +S +IR GET + GESG GKS
Sbjct: 1 MSPNPLLQVRNLSVSFTTNDGV-------VDAVKNVSFDIRPGETLAIVGESGSGKSVST 53
Query: 61 RLLLRLIEPT-----EGSIYFDGIDITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIY 114
L++L+ E SI F+G ++ +MR++R R+G++FQ+P +SLNP M +
Sbjct: 54 NALMQLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVG 113
Query: 115 DTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH--LSRYPHELSGGQLQRVSIARAI 172
+ + HR + K +++E+ + V L + ++PHE SGGQLQR+ IA A+
Sbjct: 114 VQVAEAIRCHRNVSQNQAK-QRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMAL 172
Query: 173 ITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMY 232
I PD ++ DEPT+ALD++VQA++L L+ +Q + LFI+HD+ V+++++DR+ +M
Sbjct: 173 INEPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMC 232
Query: 233 LGKVVEILSIDD-FRKGEIYHPYTAYLLLSTP 263
G VVE S + F + E H YT L+ S P
Sbjct: 233 KGDVVEQGSTEQLFLQPE--HDYTRMLINSIP 262
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 202 bits (508), Expect = 6e-51
Identities = 122/340 (35%), Positives = 191/340 (55%), Gaps = 19/340 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
MK + ++L+ F G V AV G++ +++KGET + GESG GKS +
Sbjct: 1 MKTLLEVKDLQVSFDTHAG-------EVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKA 53
Query: 63 LLRLIEPT-----EGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDT 116
L+ LI G I F+G D+TKL + EM+++R + + ++FQDP +SLNP MTI +
Sbjct: 54 LMGLIPNPPGRIKNGEIVFEGRDLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIGNQ 113
Query: 117 LKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIIT 174
+ L H+ S+ + +E+++ VG+ E L +YPH+ SGG QRV IA A+
Sbjct: 114 IMEGLIKHQ-GMSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALAC 172
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
NP ++ DEPT+ALD+++QAQIL L+ ++Q+K +FI+HD+ V+ ++DR+ +MY G
Sbjct: 173 NPKLLIADEPTTALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAG 232
Query: 235 KVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFH 294
KVVEI ++D+ HPYT L+ S P+L S+ + G P + P G F
Sbjct: 233 KVVEIGTVDEIFYNP-KHPYTWGLIASMPSLDGSE--EELYAIPGTPPDLLKPPKGDAFA 289
Query: 295 VRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDKTREELGP 334
R P + + +PPL ++ HY A + E+ P
Sbjct: 290 PRNPQALKIDFEMDPPLFKVSDTHYAATWLLHEQAPEVKP 329
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 201 bits (507), Expect = 8e-51
Identities = 108/304 (35%), Positives = 180/304 (58%), Gaps = 15/304 (4%)
Query: 29 YVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT---EGSIYFDGIDITKLD 85
+V + +++++ KGE G+ GESG GKST G + R++ P +G I DG+++ KL
Sbjct: 22 WVKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRILPPNARIQGDIIVDGVNLAKLK 81
Query: 86 KDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES----EEEKYDKIVEI 140
E++K R + ++FQ+P +SLNP + L ++I E EE ++E+
Sbjct: 82 DSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVKIRYQREGKKAEEESLMRDVIEV 141
Query: 141 LEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILN 198
L+ + L + + + RYPH+LSGGQ+QR+ I+ A++ P ++ DEPTSALD+++QAQ++N
Sbjct: 142 LKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMALLLKPKLLIADEPTSALDVTIQAQVVN 201
Query: 199 LLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYL 258
L L ++ N + LFI+HDIS+ +SDRI +MY G+++E +++ K + HPYT L
Sbjct: 202 LFKQLNKEINTSILFITHDISLAYVVSDRIVVMYAGRIMEDGKVEEVLKSPM-HPYTQGL 260
Query: 259 LLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDH 318
+ S P+ + + + G PS +P GC+F RC V C+ +EP ++E K
Sbjct: 261 VASIPS---GDKNQKLTAIPGNPPSFFALPTGCKFSNRCSKVFDICRKKEPSIIE-KNGR 316
Query: 319 YVAC 322
+ C
Sbjct: 317 KIRC 320
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 201 bits (506), Expect = 1e-50
Identities = 116/308 (37%), Positives = 179/308 (57%), Gaps = 8/308 (2%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+NL K F + G +F + + AVD ++ +I + E F LAGESGCGK+T +++L EP
Sbjct: 7 KNLTKIFTI-GSIFSRTRIV--AVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGFEEP 63
Query: 70 TEGSIYFDG--IDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLA 127
T G I + G ID ++ E R+L + + VFQ+P S+ NP + L +A
Sbjct: 64 TSGEIIYKGRKIDRVHQNEKERRELLKEIQAVFQNPFSTFNPLRKVDRYFYETLFNLGIA 123
Query: 128 ESEEEKYDKIVEILEAVGLG-EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+++++ + I E L AVG+ EE +YP E SGGQLQR+SIARA++TNP +V DEP S
Sbjct: 124 DTKKKAEEIIKEKLSAVGISFEEFSEKYPSEFSGGQLQRISIARALLTNPSLLVADEPVS 183
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
+D S++ I+NL +L+ ++ ++ L+I+HD++ Y+SDRI +M+ G +VE+ +
Sbjct: 184 MVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVMFRGNIVELGPAEKVL 243
Query: 247 KGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKD 306
E HPYT L S P P K+ ++ L+ E + GC+F RCP C+
Sbjct: 244 M-EPKHPYTQLLRESVPEPDPKKKWDIRIKLS-ETEQAEYLRQGCKFAGRCPKAMDICRK 301
Query: 307 EEPPLVEI 314
E PP E+
Sbjct: 302 EPPPYFEV 309
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 200 bits (504), Expect = 2e-50
Identities = 117/296 (39%), Positives = 165/296 (55%), Gaps = 5/296 (1%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDE- 88
V AVD ++ +I++GE L GESG GK+T G+L+LRLI+PT G I F G DI DKD+
Sbjct: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
Query: 89 MRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG- 147
M + + VFQDP +S NP + S+ EK + + LE+VGL
Sbjct: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
Query: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
E L ++PH+LSGGQLQR+ IARA++ P ++ DE S LD S + +LNLL +
Sbjct: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHP 267
+ +FI+HD+++ Y+SD+I IMY G +VE + + HPYT LL S P L
Sbjct: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPL-HPYTKMLLESVPDL-- 258
Query: 268 SKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
+ + K I + GC+F RC KC P VE++K+H+VACH
Sbjct: 259 NVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 200 bits (503), Expect = 2e-50
Identities = 112/299 (37%), Positives = 173/299 (57%), Gaps = 11/299 (3%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLI-----EPTEGSIYFDGIDITKLDK 86
A+ G++ +++ GE G+ GESGCGKS +LRL+ + G + F G ++ +L +
Sbjct: 31 ALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLLPKQTAKTVGGEVIFKGRNLLELSE 90
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
+MR++R R+ ++FQDP +SL+P T+ + ++IH S E +K +E+L V
Sbjct: 91 RQMREVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAVQIHGRV-SRAEALEKALEMLRLVR 149
Query: 146 LG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ E L+ YPHE+SGG QR IA A+ +P+ ++ DEPT+ALD+++QAQIL L+V+L
Sbjct: 150 IADPERRLNNYPHEMSGGMRQRAMIAMALACSPELLIADEPTTALDVTIQAQILRLIVDL 209
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+ + +FI+HD+ V+ R+ +MY G++VE S+ D HPYT L+ S P
Sbjct: 210 KDRMGTAVMFITHDLGVVAETCQRVIVMYAGRIVEQASVTDL-FARPTHPYTRALMNSVP 268
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
R SR + G VPS GC F RCPF C+++ P L EI+ H AC
Sbjct: 269 DRRRG-RQSRLPEIPGVVPSLREPLVGCSFAERCPFAIGVCREKMPVLSEIQPGHAAAC 326
>gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . amino-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 245
Score = 198 bits (499), Expect = 7e-50
Identities = 108/223 (48%), Positives = 152/223 (67%), Gaps = 9/223 (4%)
Query: 14 KYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGS 73
KY R GLF++ LYVHAV+ +S+ I+KGE FGL GESG GK+T G+ +LRLIE GS
Sbjct: 16 KYPMGRVGLFRK--LYVHAVNDVSLEIKKGEIFGLIGESGSGKTTLGKGILRLIETYSGS 73
Query: 74 IYF--DG---IDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
IY+ DG +DITKL+ + +R+LR+ I+ QDP +L+PRM++Y+ L L +H+L
Sbjct: 74 IYWKVDGGKLVDITKLNDNTLRRLRKDFQIIQQDPYGALDPRMSVYEILAEGLRLHKLIS 133
Query: 129 SEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
++ E+ ++I +IL V L E ++ P ELSGGQ QRV +ARA++ P F+V DEP S
Sbjct: 134 NKSEEVEQIYKILSIVKLTPPENFANKKPMELSGGQRQRVVVARALLLRPKFIVADEPIS 193
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIG 229
LD S + QIL ++N + + YLFI+HDIS+ Y+SDRIG
Sbjct: 194 MLDASTRGQILEFILNDRDQRGTAYLFITHDISIASYVSDRIG 236
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 198 bits (497), Expect = 1e-49
Identities = 117/302 (38%), Positives = 169/302 (55%), Gaps = 15/302 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
V A + +S ++ GE FGLAGESGCGKST L+RL +P T G + F+G DI K
Sbjct: 22 VRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKYS 81
Query: 86 KDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
+ M+ R + M +VFQ ++LNP +T+ + + H E+ K + +LE V
Sbjct: 82 DERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRHTNMTREQAKR-RAEGLLEIV 140
Query: 145 GLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
+ L+ YPH+ SGG QR+ IA A+ NP +++DEPT+ALD+ VQ +IL + L+
Sbjct: 141 DIHPSRLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALK 200
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPA 264
+F + LFI+HD+S++ SDRIGIMY G+++E+ + YHPYT L S P
Sbjct: 201 EEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQILETP-YHPYTKGLGSSFPP 259
Query: 265 LHPSKRTSRKVILTGEVPSPIN---VPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVA 321
L T K LTG +P+N +P GCRF RC V + C L +I+ +
Sbjct: 260 L-----TGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSN 314
Query: 322 CH 323
CH
Sbjct: 315 CH 316
>pir||B83389 probable ATP-binding component of ABC transporter PA2061 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948069|gb|AAG05449.1|AE004632_8 (AE004632) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 198 bits (497), Expect = 1e-49
Identities = 110/250 (44%), Positives = 159/250 (63%), Gaps = 4/250 (1%)
Query: 16 FPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIY 75
+P GG +++ + AV +S+ +R+G T G+ GESG GKS+ G+ LLRL+ P EG I
Sbjct: 278 YPAPGGWLRRR-AGLRAVHEVSLRLRRGSTLGIVGESGSGKSSLGQALLRLL-PAEGQIL 335
Query: 76 FDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD 135
F G + +L + LRR+ VFQDP SLNPR+++ + L IH + ++ E +
Sbjct: 336 FQGERLDRLHGKRLLPLRRQFQAVFQDPYGSLNPRLSVEQIVGEGLRIHGIGDAGERRA- 394
Query: 136 KIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQ 195
+++E L VGL E L RYPHE SGGQ QR++IAR ++ P ++LDEPTSALD SVQ Q
Sbjct: 395 RVLEALREVGLDEPCLERYPHEFSGGQRQRIAIARTLVLKPALILLDEPTSALDRSVQCQ 454
Query: 196 ILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYT 255
++ LL LQR+ L+YLFISHD++V++ ++ I ++ G+VVE S + HPYT
Sbjct: 455 VVELLRRLQRRHGLSYLFISHDLAVVRALAHDILVLKDGRVVEQGSAAAL-FSQPRHPYT 513
Query: 256 AYLLLSTPAL 265
LL + PAL
Sbjct: 514 RELLGAIPAL 523
Score = 160 bits (400), Expect = 3e-38
Identities = 95/253 (37%), Positives = 147/253 (57%), Gaps = 13/253 (5%)
Query: 22 LFKQKNLYV-----HAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GS 73
L + +NL V V GI ++R GET L GESG GKS LLRL+ GS
Sbjct: 5 LLRVENLSVAYGDTQVVKGIDFSLRAGETLALVGESGSGKSQTAHALLRLLPGAARLGGS 64
Query: 74 IYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEE 132
+ DG ++ L + +R +R+G+VFQ+P +SLNP I + L +HR
Sbjct: 65 VRLDGEELLALSPQALLAIRGQRIGMVFQEPMTSLNPLQRIGRQVGEGLRLHRRLRGAAL 124
Query: 133 KYDKIVEILEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDI 190
+ +++E+LE GL + L YPH+LSGGQ QRV +A A+ P ++ DEPT+ALD+
Sbjct: 125 R-GRVLELLELAGLEQPRRLLEAYPHQLSGGQRQRVMLAMALACEPQLLIADEPTTALDV 183
Query: 191 SVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI 250
+VQ ++L LL +LQR+ + L ISHD+++++ ++DR+ +M G++VE + + +
Sbjct: 184 TVQKRLLELLQSLQRRLGMAILLISHDLNLVRRVADRVCVMRDGQIVEENACETLFRSP- 242
Query: 251 YHPYTAYLLLSTP 263
HPYT L+ + P
Sbjct: 243 RHPYTRLLIEAEP 255
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 197 bits (496), Expect = 1e-49
Identities = 123/321 (38%), Positives = 177/321 (54%), Gaps = 12/321 (3%)
Query: 8 VTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLI 67
+ ++L K + G F Q +V V ++ + E F +AGESGCGKST + L+
Sbjct: 4 IMDSLLKVNELTAGYFNQDG-FVIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLL 62
Query: 68 E----PTEGSIYFDGIDITKLDKDEMRKLRRRMGI-VFQDPKSSLNPRMTIYDTLKRPLE 122
+ G +Y DI + ++E+RKLR + + V Q +L+P I D + R
Sbjct: 63 KYPGVVLRGHVYLKDKDILSITQEELRKLRMKEFVYVPQFAMDALDPVAKIGDQMMRAAV 122
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
H + E K K E LE V L ++ YPHELSGG QRV IA +I+ NP ++LD
Sbjct: 123 SHGVNVEEARKLIK--EKLELVDLPYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILD 180
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPT+ LD+ VQ +IL L +QR+ ++ + ISHDIS+L +SDR+GIMY G++VEI S
Sbjct: 181 EPTTGLDVIVQYEILKDLKRIQRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSK 240
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPIN-VPPGCRFHVRCPFVT 301
++ K HPYT L+ S P+L KR + + + G P ++ VP CRF+ RCPF
Sbjct: 241 EEIIK-RPSHPYTYLLISSLPSL--VKRREKLLSIPGNPPLMLSKVPNSCRFYDRCPFKM 297
Query: 302 QKCKDEEPPLVEIKKDHYVAC 322
+KC P L +I H C
Sbjct: 298 EKCSTLNPALGDIMDGHKARC 318
Score = 171 bits (430), Expect = 8e-42
Identities = 99/262 (37%), Positives = 155/262 (58%), Gaps = 20/262 (7%)
Query: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
NL K + +R L + ++AV+ +S ++KG L G SG GKST ++L +I+ T
Sbjct: 361 NLSKIYYIRKNLILSEP--INAVNDVSFELKKGTITALVGGSGHGKSTIAKILAGMIQQT 418
Query: 71 EGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESE 130
G I G D+++ + + ++FQDP SSL+PR T+ ++RPL IH+ ++
Sbjct: 419 SGKIILLGKDVSEYGVRNSMWYKENVQMIFQDPYSSLDPRHTVRWHVERPLLIHKKVSNK 478
Query: 131 EEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSAL 188
++ KI+E+L+ VGL E++L +YPHELSGG+ QRV+IARA P +V DEP S L
Sbjct: 479 DQLLPKIIEVLKNVGLKPPEKYLYKYPHELSGGERQRVAIARATAVEPKVLVADEPVSML 538
Query: 189 DISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKG 248
D S++A ILNL+ +K ++ L+I+HDI+ + Y++D I ++Y G++VE KG
Sbjct: 539 DASLRAGILNLIKKF-KKNGISILYITHDIATVNYIADEIMVIYKGRIVE--------KG 589
Query: 249 EIY-------HPYTAYLLLSTP 263
Y H YT L+ + P
Sbjct: 590 NTYEVISNPSHEYTKRLIEAVP 611
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 197 bits (495), Expect = 2e-49
Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 24/338 (7%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
F+ +LK +F GG+ K AVDG+S ++ +G+T G+ GESG GKS +L
Sbjct: 19 FLSVRDLKVHFSTEGGVVK-------AVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLG 71
Query: 66 LIE----PTEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRP 120
L + +GSI DG ++T + ++ KLR ++M ++FQD ++L+P T+ + P
Sbjct: 72 LHDRRRTAIDGSITLDGQELTDASEKQLEKLRGKKMAMIFQDALTALSPYYTVGRQIAEP 131
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDF 178
H A ++ + I ++L+ VG+ ++ + YPH+ SGG QR IA A+ NPD
Sbjct: 132 FMKHNGASKKDARCGAI-DLLQKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMALSCNPDL 190
Query: 179 VVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
++ DEPT+ALD++VQAQIL+LL +LQ++F + I+HD+ V+ M+D I +MY G+ VE
Sbjct: 191 LIADEPTTALDVTVQAQILDLLKDLQQEFASAIIMITHDLGVVGNMADDIMVMYAGRAVE 250
Query: 239 ILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCP 298
++ + K HPYT LL S P L S + + G PS +N P GC FH RC
Sbjct: 251 RGTVREVLKSP-QHPYTWGLLSSMPNL-TSDVDEPLMPIPGSPPSLMNPPSGCAFHPRCG 308
Query: 299 FVT----QKCKDEEPPLVEIKKDHYVACHYPDKTREEL 332
F ++C E P L ACH R+++
Sbjct: 309 FTDLVSGERCSGERPTL---PHGRAAACHLTGDQRQQV 343
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 197 bits (495), Expect = 2e-49
Identities = 111/324 (34%), Positives = 188/324 (57%), Gaps = 11/324 (3%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
+NL K F + KQ + A++ +S + K + GESG GKST +++ ++ P
Sbjct: 13 KNLVKDFAINSNALKQPMM--RAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAP 70
Query: 70 TEGSIYFDGIDITKL-DKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAE 128
T G I + G DI + +D++ R + +V+QDP SLNP TI+ + RPL IH+
Sbjct: 71 TSGVIEYKGRDIQDIVSRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIARPLLIHKKVT 130
Query: 129 --SEEEKYDKIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+++E +++ E+LE VGL + ++YPH+LSGGQ QRV++AR I + V+ DEP
Sbjct: 131 PGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAEVVLADEP 190
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
TS LD+S++A +LNL+ ++ + ++ L+I+HDI+ +Y+++ + +MY+G +VE D+
Sbjct: 191 TSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHMVEWGDTDE 250
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKRTSRKVI-LTGEVPSPINVPPGCRFHVRCPFVTQK 303
+ HPYT L+ + P P K K+ GE+P GC F RC + + K
Sbjct: 251 IIH-DPQHPYTKLLVSAVP--DPKKSIHEKLEGNKGEIPLWTPNSVGCPFAGRCLYASAK 307
Query: 304 CKDEEPPLVEIKKDHYVACHYPDK 327
C++ P + ++ +H+V C+ +K
Sbjct: 308 CREALPEVTQLSDNHFVRCYLFEK 331
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 194 bits (489), Expect = 1e-48
Identities = 114/308 (37%), Positives = 179/308 (58%), Gaps = 14/308 (4%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT---EGSIYFDGI 79
F ++ V AV+ ++ ++++GET G+ GESG GKS ++ L+ GS F+G
Sbjct: 14 FSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGKITGSAKFEGK 73
Query: 80 DITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIV 138
+I L + E+ K+R ++ ++FQDP +SLNP M + D L L +H+ + E +++ V
Sbjct: 74 EILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHK-GMGKAEAFEESV 132
Query: 139 EILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQI 196
+LEAV + E + ++ YPHE SGG QRV IA A++ P ++ DEPT+ALD++VQAQI
Sbjct: 133 RMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI 192
Query: 197 LNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTA 256
+ LL L+R+FN + I+HD+ V+ D++ +MY G+ +E S++D HPY
Sbjct: 193 MELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIFYNP-SHPYAE 251
Query: 257 YLLLSTPALHPSKRTSRKVILT--GEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
LL + P L T +V+ T G P+ + +P GC + RC VT +CK E P L+
Sbjct: 252 GLLSAIPRLD----TEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKREAPILLPF 307
Query: 315 KKDHYVAC 322
AC
Sbjct: 308 GNSRQRAC 315
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 194 bits (487), Expect = 2e-48
Identities = 117/310 (37%), Positives = 173/310 (55%), Gaps = 12/310 (3%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDG 78
F K AVD IS + +GE G+ GESG GKS ++ LI+ + S+ F+
Sbjct: 13 FGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFEN 72
Query: 79 IDITKLDKDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKI 137
D+ L+ R+L + ++FQDP +SLNP T+ + L+ H + K D+
Sbjct: 73 TDLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGGTKKARK-DRT 131
Query: 138 VEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQ 195
+E+L+ VG+ E + YPH+LSGG QRV IA AI P ++ DEPT+ALD+++QAQ
Sbjct: 132 LELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ 191
Query: 196 ILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYT 255
I+ LL+ LQ+K ++ + I+HD++++ ++RI +MY G++VE + D + E HPYT
Sbjct: 192 IMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDIFR-EPKHPYT 250
Query: 256 AYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIK 315
LL S P K SR L G VP + P GC + RCP+ T+ C+ EP L I
Sbjct: 251 QALLRSLPEFAEGK--SRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVEPQLHHI- 307
Query: 316 KDHYVACHYP 325
V CH P
Sbjct: 308 GSRKVKCHTP 317
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 194 bits (487), Expect = 2e-48
Identities = 108/266 (40%), Positives = 166/266 (61%), Gaps = 7/266 (2%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+V+E K Y RG +++ + AVDG+S + + T + GESG GKST R++L L
Sbjct: 283 VVSELTKIYRESRGAPWRR--VESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGL 340
Query: 67 IEPTEGSIYFDGI-DITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
++PT G++ FDG D+ L +D++ RRR+ VFQ+P SSL+P +++ ++ PL +H
Sbjct: 341 LQPTSGTVVFDGTYDVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHH 400
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+ + ++ + E+++ V L L R P ELSGGQ QRV+IARA+ P+ +V DE
Sbjct: 401 VGD-RRQRQRAVRELVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAV 459
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD- 244
SALD+ VQAQIL+LL +LQ LTYLFISHD++V++ ++D + +M G+VVE S ++
Sbjct: 460 SALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEV 519
Query: 245 FRKGEIYHPYTAYLLLSTPALHPSKR 270
F + H YT LL + P + R
Sbjct: 520 FSRPR--HEYTRQLLQAIPGAPSAPR 543
Score = 134 bits (333), Expect = 2e-30
Identities = 87/262 (33%), Positives = 134/262 (50%), Gaps = 16/262 (6%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLDKD 87
AV G+ + +R G+T + GESG GKST +L L+ T G + FDG DIT D
Sbjct: 24 AVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGGRITAGRVVFDGRDITGADAK 83
Query: 88 EMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGL 146
+R +R R +G V QDP ++LNP + + L + + + VE+L GL
Sbjct: 84 RLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTDGRAARRR---AVELLAEAGL 140
Query: 147 GE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
+ + RYPH+LSGG QR IA + P ++ DEPTSALD++VQ Q+L+ L L
Sbjct: 141 PDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQRQVLDHLQGLT 200
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPA 264
+ L I+HD+++ ++ + ++ G VVE + + H YT L+ + P+
Sbjct: 201 DELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSILQSP-QHEYTRRLVAAAPS 259
Query: 265 L-----HPSKRTSRKVILTGEV 281
L P + SR G++
Sbjct: 260 LTARSRRPPESRSRATTQAGDI 281
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 193 bits (486), Expect = 2e-48
Identities = 116/332 (34%), Positives = 186/332 (55%), Gaps = 22/332 (6%)
Query: 3 MKDFIV-TENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
MK+ ++ EN++ Y+ K + + V AVDG+S I + E G+ GESGCGK+T
Sbjct: 1 MKEILLKAENVRAYY-------KLEKVSVKAVDGLSFEILEDEVIGVVGESGCGKTTLSN 53
Query: 62 LL-LRLIEP---TEGSIYF----DGIDITKLDKDEMRKL--RRRMGIVFQDPKSSLNPRM 111
++ + +++P +G I+ + ++++ + +DE+++ + + I+ Q ++L P +
Sbjct: 54 VIFMNMVKPLTLVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNALMPTI 113
Query: 112 TIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARA 171
+ ++ E H + EEE DK E VGL + RYP ELSGG QR IA A
Sbjct: 114 RMEKYVRHLAESHGI--DEEELLDKARRRFEEVGLDPLWIKRYPFELSGGMRQRAVIAIA 171
Query: 172 IITNPDFVVLDEPTSALDISVQAQILNLLVNLQRK-FNLTYLFISHDISVLQYMSDRIGI 230
I NP ++ DEPTSALD+ Q +L +L+ ++R+ + +FI+HDI+ ++ ++DR+ I
Sbjct: 172 TILNPSLLIADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMII 231
Query: 231 MYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPG 290
MY GK+VE ++ + + HPYT L S P + + G P+ IN P G
Sbjct: 232 MYAGKIVEFAPVESLLEKPL-HPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSG 290
Query: 291 CRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
CRFH RCP CK++EPPL EI+ VAC
Sbjct: 291 CRFHPRCPHAMDVCKEKEPPLTEIEPGRRVAC 322
>gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter ATPase subunit [uncultured
proteobacterium EBAC31A08]
Length = 532
Score = 193 bits (485), Expect = 3e-48
Identities = 102/232 (43%), Positives = 155/232 (65%), Gaps = 3/232 (1%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +L Y+ + F +KN + HAV S +I K T GL GESG GKST G+ + L
Sbjct: 275 IEINDLNVYYSIPSTNFFKKNTF-HAVKNTSFSIYKNTTIGLVGESGSGKSTLGKAIANL 333
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+ +G+I F+G DI + E ++L++ + IVFQDP SL+PRMT+ + + L +H
Sbjct: 334 VS-YKGNIKFEGRDINSNSQKENKELKKNVQIVFQDPYGSLSPRMTVGEIVGEGLGVH-F 391
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+++E+ ++I ++L VG+ ++YPHE SGGQ QR++IAR++I NP F++LDEPTS
Sbjct: 392 KLTKKERDERIDKVLSDVGIEIVAKNKYPHEFSGGQRQRIAIARSLIMNPAFMILDEPTS 451
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
ALD S+Q Q+++LL +Q ++ LTYLFISHD+ V++ MSD I +M G++VE
Sbjct: 452 ALDRSIQIQVIDLLKEIQNEYGLTYLFISHDLKVIRSMSDFIFVMKNGEIVE 503
Score = 155 bits (388), Expect = 7e-37
Identities = 95/271 (35%), Positives = 154/271 (56%), Gaps = 20/271 (7%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + +L F R GLF +AVD IS +I K +T L GESG GKS
Sbjct: 1 MSKILEVSDLSINFSTRDGLF-------NAVDNISFDIEKNQTLALVGESGSGKSVTAMS 53
Query: 63 LLRLIEPT------EGSIYFDGIDITKLDKDEMRKLRRRM-GIVFQDPKSSLNPRMTIYD 115
+L+L++ E SI F+G +I +++ LR + ++FQ+P +SLNP + +
Sbjct: 54 ILQLLQKPQASYSKESSIKFNGDEIINAKYEKLLSLRGNIISMIFQEPMTSLNPYHRVGN 113
Query: 116 TLKRPLEIHRLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAII 173
+ + +H + S+++ D+ +++ V + E YPHELSGGQ QRV IA A++
Sbjct: 114 QITESILLHSKS-SKKDAIDEAKKLMALVEIDDVERRFYAYPHELSGGQRQRVMIAMALV 172
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P+ ++ DEPT+ALD+++QAQIL+L+ L+ + ++ LFI+HD+ ++Q SD + +M
Sbjct: 173 NKPELLIADEPTTALDVTIQAQILDLMSKLKNELGMSILFITHDLGLVQEFSDNVCVMKN 232
Query: 234 GKVVEI-LSIDDFRKGEIYHPYTAYLLLSTP 263
GK+VE +++ F H YT LL + P
Sbjct: 233 GKIVEQGNTVEVFNNPS--HEYTKKLLDAEP 261
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 192 bits (484), Expect = 4e-48
Identities = 115/325 (35%), Positives = 184/325 (56%), Gaps = 25/325 (7%)
Query: 16 FPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIY 75
F + GLFK++ Y A+ +S+++ +G+ + GESG GK+T GR+++ L +PT G +
Sbjct: 13 FEDKVGLFKKRKFY--ALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQKPTSGEVV 70
Query: 76 FDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD 135
+DG +I K + +K R+ + ++ QDP S+L T+ + L P+ + +++E
Sbjct: 71 YDGYNIWKNKRKIFKKYRKDVQLIPQDPYSTLPFNKTVEEILVAPI-LRWEKINKDELRK 129
Query: 136 KIVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQ 193
+++ +LE V L EE L +YPH+LSGGQ QR+SIAR++ NP +V DEP + +D S++
Sbjct: 130 RLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRIIVADEPVTMVDASLR 189
Query: 194 AQILNLLVNLQRKFNLTYLFISHDISVLQYM-----SDRIGIMYLGKVVEILSIDDFRKG 248
ILN L ++ + NLT +FI+HDI + +Y +M+ G++VE +++ K
Sbjct: 190 IGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFAGRIVERADLEEILKD 249
Query: 249 EIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPIN---VPPGCRFHVRCPFVTQKCK 305
+ HPYT L+ TP++ L E+ IN V GC + +RCPF CK
Sbjct: 250 PL-HPYTNDLIKLTPSIDN---------LYKEINVKINYERVEKGCPYRLRCPFAMDICK 299
Query: 306 DEEPPLVEIKKDHYVACHYPDKTRE 330
+EEP L K H VAC K E
Sbjct: 300 NEEPKL--FKYSHEVACFLYGKVGE 322
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 192 bits (484), Expect = 4e-48
Identities = 113/302 (37%), Positives = 173/302 (56%), Gaps = 11/302 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLDK 86
V AV+ ++ ++R GET G+ GESG GKS L+ L+ GS F+G +I L +
Sbjct: 36 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 95
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
E+ KLR ++ ++FQDP +SLNP M + + L L +H+ S+ E +++ V +L+AV
Sbjct: 96 HELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNM-SKAEAFEESVRMLDAVK 154
Query: 146 LGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ E + + YPHE SGG QRV IA A++ P ++ DEPT+ALD++VQAQI+ LL L
Sbjct: 155 MPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 214
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+R+FN + I+HD+ V+ + D++ +MY G+ +E + D + HPY+ LL + P
Sbjct: 215 KREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDVFYQPV-HPYSIGLLNAVP 273
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
L T + + G P+ + +P GC F RCP + C PPL E AC
Sbjct: 274 RLDAEGET--MLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC-SSAPPLEEFTPGRLRACF 330
Query: 324 YP 325
P
Sbjct: 331 KP 332
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 192 bits (484), Expect = 4e-48
Identities = 113/302 (37%), Positives = 173/302 (56%), Gaps = 11/302 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLDK 86
V AV+ ++ ++R GET G+ GESG GKS L+ L+ GS F+G +I L +
Sbjct: 36 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 95
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
E+ KLR ++ ++FQDP +SLNP M + + L L +H+ S+ E +++ V +L+AV
Sbjct: 96 HELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNM-SKAEAFEESVRMLDAVK 154
Query: 146 LGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ E + + YPHE SGG QRV IA A++ P ++ DEPT+ALD++VQAQI+ LL L
Sbjct: 155 MPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 214
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+R+FN + I+HD+ V+ + D++ +MY G+ +E + D + HPY+ LL + P
Sbjct: 215 KREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDVFYQPV-HPYSIGLLNAVP 273
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
L T + + G P+ + +P GC F RCP + C PPL E AC
Sbjct: 274 RLDAEGET--MLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC-SSAPPLEEFTPGRLRACF 330
Query: 324 YP 325
P
Sbjct: 331 KP 332
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 192 bits (482), Expect = 6e-48
Identities = 109/310 (35%), Positives = 172/310 (55%), Gaps = 11/310 (3%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE----PTEGSIYFDG 78
F ++ AVD IS ++++GE G+ GESG GKS ++ LI+ + F+G
Sbjct: 13 FGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG 72
Query: 79 IDITKLDKDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKI 137
D+ ++ + E R L + ++FQDP +SLNP T+ + +++H+ ++ + +
Sbjct: 73 QDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ-GGNKSTRRQRA 131
Query: 138 VEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQ 195
+++L VG+ + L YPH+LSGG QRV IA AI P ++ DEPT+ALD+++QAQ
Sbjct: 132 IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ 191
Query: 196 ILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYT 255
I+ LL+ LQ+K N+ + I+HD++++ + +I +MY G+VVE HPYT
Sbjct: 192 IIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAP-RHPYT 250
Query: 256 AYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIK 315
LL + P K R L G VP + P GC + RCP+ T +C+ EEP L +
Sbjct: 251 QALLRALPEFAQDK--ERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLA 308
Query: 316 KDHYVACHYP 325
CHYP
Sbjct: 309 DGRQSKCHYP 318
>pir||T35982 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464267|emb|CAB37470.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 398
Score = 191 bits (480), Expect = 1e-47
Identities = 122/308 (39%), Positives = 165/308 (52%), Gaps = 18/308 (5%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP---TEGSIYFDGIDITKLDKDE 88
AV G+ + + GE G+AGESGCGKST LLRL+ P G I DG D+ +
Sbjct: 19 AVRGVDLTLAAGEKLGVAGESGCGKSTLALALLRLLPPGARVGGEILLDGEDVLTMKWGR 78
Query: 89 MRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG 147
+R +R IVFQ SLN + D + P+ +HR + + + E+LE VGL
Sbjct: 79 VRAVRWAGASIVFQGAMHSLNAVHRVGDQIAEPILLHRRTTAAGARR-RAGELLEQVGLP 137
Query: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
S YPHELSGGQ QRV IA A+ +P +V DEPT+ALD+ +QAQIL L+ L +
Sbjct: 138 AARASAYPHELSGGQRQRVMIAMALACDPRLIVADEPTTALDVMIQAQILRLIEGLVGEQ 197
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVE----ILSIDDFRKGEIYHPYTAYLLLSTP 263
++ + ISHD++VL DR+ +MY G+VVE DD R HPY L + P
Sbjct: 198 DVGLIMISHDLAVLADTCDRLAVMYAGRVVEEGPARQVYDDAR-----HPYGRALSEAFP 252
Query: 264 AL-HPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
+ P+ R + + L G+ P P VP GC FH RCP C ++ PL + AC
Sbjct: 253 TIGDPASRFAPRG-LPGDPPDPAAVPSGCAFHPRCPVALDLCATQDQPLRDAGARRRAAC 311
Query: 323 HY--PDKT 328
+ PD T
Sbjct: 312 VHVGPDGT 319
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 191 bits (480), Expect = 1e-47
Identities = 111/291 (38%), Positives = 169/291 (57%), Gaps = 23/291 (7%)
Query: 50 GESGCGKSTFGRLLLRLIEPT----EGSIYFD-----GIDITKLDKDEMRKLRRRM-GIV 99
GESGCGKST R + R++ +GSI + +D+ +L +DE+ K+R ++ ++
Sbjct: 2 GESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMI 61
Query: 100 FQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIV-EILEAVGLGEEH--LSRYPH 156
FQDP ++L+P +K+ + H E+ + +KI EIL+ + + H L +YPH
Sbjct: 62 FQDPSAALSP----VHKVKKQVTDH--VSGEKRRVEKIAQEILKKLMMPAPHMILEKYPH 115
Query: 157 ELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISH 216
ELSGG QR+ IA ++IT P ++ DEPT+ALD++VQAQIL +L L+ + T + I+H
Sbjct: 116 ELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITH 175
Query: 217 DISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVI 276
+++V ++DRI +MY G VVE+ + + + HPYT LL S P H +
Sbjct: 176 NLAVAAEIADRIAVMYAGHVVEVADVFSLFERPL-HPYTKGLLKSIPKPHVDEEIEP--- 231
Query: 277 LTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDK 327
+ GE PS + PPGCRFH RCP+V C +P L E VACH ++
Sbjct: 232 IRGEPPSLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHLEER 282
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 188 bits (473), Expect = 7e-47
Identities = 110/302 (36%), Positives = 170/302 (55%), Gaps = 11/302 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLDK 86
V AV+ ++ +R GET G+ GESG GKS L+ L+ GS F+G +I L +
Sbjct: 34 VTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLATNGRIGGSATFNGREILNLPE 93
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
E+ LR ++ ++FQDP +SLNP M + + L L +H+ S+ E +++ V +L+AV
Sbjct: 94 RELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAFEESVRMLDAVK 152
Query: 146 LGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ E + + YPHE SGG QRV IA A++ P ++ DEPT+ALD++VQAQI+ LL L
Sbjct: 153 MPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 212
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+R+FN + I+HD+ V+ + D++ +MY G+ +E D + HPY+ LL + P
Sbjct: 213 KREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFYQPV-HPYSIGLLNAVP 271
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
L + + + G P+ + +P GC F RCP + C + PPL AC
Sbjct: 272 RL--DSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC-NNAPPLEAFSPGRLRACF 328
Query: 324 YP 325
P
Sbjct: 329 KP 330
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 187 bits (470), Expect = 2e-46
Identities = 115/310 (37%), Positives = 167/310 (53%), Gaps = 14/310 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSI-----YFDGIDITKL 84
V A +G+S+ I GET G+ GESG GKS R LL L+ +I F G ++ L
Sbjct: 23 VVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLLPSPPATIRADRLVFAGRNMLSL 82
Query: 85 DKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEA 143
EMR +R + + +VFQ+P SSLNP I D + L +HR + + + + L
Sbjct: 83 TAAEMRAVRGQEISMVFQNPMSSLNPVWPIGDQISEGLRVHRGIGNAQAR-SAAIAALRR 141
Query: 144 VGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLV 201
VG+ E + YPH+ SGG QR IA A+I P ++ DEPT+ALD+++Q QIL+LL+
Sbjct: 142 VGIPSPEIRVDDYPHQWSGGMAQRAVIAMAMIGEPKLLLADEPTTALDVTIQDQILSLLM 201
Query: 202 NLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI-LSIDDFRKGEIYHPYTAYLLL 260
LQR+ + + +SHD+SV+ D + +MY G VVE + D FR HPYTA LL
Sbjct: 202 QLQRETGMAIVLVSHDMSVISETCDNVAVMYAGGVVETGRTTDIFRTPS--HPYTAGLLN 259
Query: 261 STPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYV 320
S P + R + + G+ P + PGC F RC + +C+ L +
Sbjct: 260 SIPPI--KGRADKLASIPGQPPDLARLGPGCPFFERCSVASAECQTRPVALKRLASGQQT 317
Query: 321 ACHYPDKTRE 330
ACH+P++ E
Sbjct: 318 ACHFPERVPE 327
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 185 bits (465), Expect = 6e-46
Identities = 109/302 (36%), Positives = 169/302 (55%), Gaps = 11/302 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE---GSIYFDGIDITKLDK 86
V AV+ ++ +R GET G+ GESG GKS L+ L+ GS F+G +I L +
Sbjct: 34 VTAVNDLNFTLRAGETLGIVGESGSGKSQSRLRLMGLLATNGRIGGSATFNGREILNLPE 93
Query: 87 DEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVG 145
E+ R ++ ++FQDP +SLNP M + + L L +H+ S+ E +++ V +L+AV
Sbjct: 94 RELNTRRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAFEESVRMLDAVK 152
Query: 146 LGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
+ E + + YPHE SGG QRV IA A++ P ++ DEPT+ALD++VQAQI+ LL L
Sbjct: 153 MPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 212
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
+R+FN + I+HD+ V+ + D++ +MY G+ +E D + HPY+ LL + P
Sbjct: 213 KREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFYQPV-HPYSIGLLNAVP 271
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
L + + + G P+ + +P GC F RCP + C + PPL AC
Sbjct: 272 RL--DSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC-NNAPPLEAFSPGRLRACF 328
Query: 324 YP 325
P
Sbjct: 329 KP 330
>pir||E71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329142|gb|AAC68284.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 276
Score = 184 bits (463), Expect = 1e-45
Identities = 109/267 (40%), Positives = 161/267 (59%), Gaps = 2/267 (0%)
Query: 12 LKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTE 71
L K++ R F++K + ++ +S ++ + + GL GESG GK+T L LI T
Sbjct: 12 LTKHYYKRSFWFQKKKVATTPLNQVSFSLPRHKIIGLIGESGSGKTTLALGLAGLIPLTS 71
Query: 72 GSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEE 131
G + + I +K + L ++ +VFQ+P+SSLNPR TI+DTL L HRL S+E
Sbjct: 72 GHLILNDKAIPLHNKKGRQYLSSQVRMVFQNPRSSLNPRKTIFDTLSHSLLYHRLV-SKE 130
Query: 132 EKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
E + + L VGL ++L YPH+LSGGQLQR+SIARA++ P ++ DE SALD+S
Sbjct: 131 ELGATVEKALSLVGLSTDYLYSYPHQLSGGQLQRISIARALLGAPQLIICDEIVSALDLS 190
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
+QAQILN+L +LQ++ LTYLFISHD++V++ + IMY G++VE + ++
Sbjct: 191 MQAQILNMLTSLQQQARLTYLFISHDLAVVRSFCSELIIMYKGQIVETGATEEIFCNP-Q 249
Query: 252 HPYTAYLLLSTPALHPSKRTSRKVILT 278
H YT LL S P R +V L+
Sbjct: 250 HSYTRMLLHSQLPEFPEDRRDVQVPLS 276
>gb|AAD48154.1|AF086618_1 (AF086618) ABC transporter homolog [Loofah witches'-broom
phytoplasma]
Length = 315
Score = 183 bits (460), Expect = 2e-45
Identities = 118/327 (36%), Positives = 185/327 (56%), Gaps = 31/327 (9%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K + I +NL K+F R LF + ++++ A D IS++I KG+T + G G GKST G+
Sbjct: 8 KYQILIECKNLSKFF-FRKKLFAKSSIFLKANDDISLSIHKGQTLAVVG--GSGKSTLGQ 64
Query: 62 LLLRLIEPTEGSIYF----DGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTL 117
LL+L + T G + + I++++L +++ I+FQ+P SLNP++ I D +
Sbjct: 65 TLLQLEKSTSGKVIYYKEQQSINLSELSTKDLQ-------IIFQNPYLSLNPKILISDII 117
Query: 118 KRPLEIHRLAESEEEKY--DKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITN 175
L IH L +S+ + KI++I++ G+ EE +R +LSGG+ QR++IAR +I
Sbjct: 118 GEGLLIHNLVKSKNDPLYKQKILDIMKKCGVKEELYNRSLAQLSGGERQRIAIARTLIIE 177
Query: 176 PDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGK 235
P F+V DE S LD+++Q QIL LL L++ + LT LFI+HD+ V +Y+SD+I IMYLGK
Sbjct: 178 PKFIVCDEIVSLLDVTIQKQILELLKQLKKNYELTLLFITHDLGVAKYLSDQIAIMYLGK 237
Query: 236 VVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHV 295
+VE+ + HPYT LL S P L +S+K I E S
Sbjct: 238 LVELGPTEKIFTNP-QHPYTIELLNSIPKLIEYGISSKKYIAKYENSS------------ 284
Query: 296 RCPFVTQKCKDEEPPLVEIKKDHYVAC 322
F+ K K E+ ++ +H++ C
Sbjct: 285 -YDFLYNK-KKEDKDWHQVSPNHFILC 309
>pir||B81746 peptide ABC transporter, ATP-binding protein TC0061 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190097|gb|AAF38946.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 290
Score = 183 bits (459), Expect = 3e-45
Identities = 111/282 (39%), Positives = 160/282 (56%), Gaps = 3/282 (1%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M I L K++ R F+QK + ++ +S I K + GL GESG GK+T
Sbjct: 1 MSNPPLIQASRLTKHYYKRSFWFQQKKIATTPLNNVSFTIPKHKIVGLIGESGSGKTTLA 60
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
L LI T G + + + K + L ++ +VFQ+P+SSLNPR TI+DTL
Sbjct: 61 LGLAGLIPLTSGHLTLNDKAVPLHSKQGRQYLSSQVRMVFQNPRSSLNPRKTIFDTLSHS 120
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
L HRL ++ + + L VG+ ++L YPH+LSGGQLQR+SIARA++ P ++
Sbjct: 121 LLYHRLV-AKTDLGATVERALSLVGISTDYLYAYPHQLSGGQLQRISIARALLGAPQLII 179
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
DE SALD+S+QAQILN L +LQ++ LTYLFISHD++V++ + IMY G++VE
Sbjct: 180 CDEVVSALDLSMQAQILNTLTSLQQQAQLTYLFISHDLAVVRSFCSELIIMYKGQLVESG 239
Query: 241 SIDDFRKGEIYHPYTAYLLLS-TPALHPSKRTSRKVILTGEV 281
+ HPYT LL S P +R R ++T E+
Sbjct: 240 PTEQI-FCHPQHPYTRMLLHSQLPEFPEHRRDLRTPLITEEL 280
>pir||E83082 probable ATP-binding component of ABC transporter PA4505 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950745|gb|AAG07893.1|AE004864_5 (AE004864) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 324
Score = 182 bits (458), Expect = 4e-45
Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 12/303 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
V VDG+ +++ KGE + GESG GKS L+ LI+ + + FDG D+ L
Sbjct: 19 VPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGWVSADHLRFDGHDMLTLK 78
Query: 86 KDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
+ R++ + M +VFQDP ++LNP T+ ++ L +H L + + +E+LE V
Sbjct: 79 GRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLRLH-LGLRGKALRQRALELLERV 137
Query: 145 GL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVN 202
+ L YPH+LSGG QRV+IA AI P ++ DEPT+ALD+++QAQI+ LL+N
Sbjct: 138 EIPAAASRLDAYPHQLSGGMSQRVAIAMAIAAEPKLLIADEPTTALDVTIQAQIMELLLN 197
Query: 203 LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLST 262
LQR ++ + I+HD++V+ + R+ +MY G+ VEI + HPYT L+ +
Sbjct: 198 LQRDQDMALILITHDLAVVAETAQRVCVMYAGEAVEIGGVPALFDRPT-HPYTEALIKAI 256
Query: 263 PALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
P +R L G VP + P GC RCP+ + C+ E P L E + V C
Sbjct: 257 P--EHCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQEHCRQERPAL-ETHERGAVRC 313
Query: 323 HYP 325
YP
Sbjct: 314 FYP 316
>pir||T03431 probable transport protein accB - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153178|gb|AAC17198.1| (AF010180) AccB
[Agrobacterium tumefaciens]
Length = 321
Score = 181 bits (454), Expect = 1e-44
Identities = 106/299 (35%), Positives = 162/299 (53%), Gaps = 17/299 (5%)
Query: 33 VDGISINIRKGETFGLAGESGCGKS----TFGRLLLRLIEPTEGSIYFDGIDITKLDKDE 88
++G+S ++ G+T GL GESGCGKS + L R I T G+I +LD
Sbjct: 31 INGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTI--------ELDSGP 82
Query: 89 MRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGL-- 146
+ + +++QDP SSLNP +I L+ L H+ E + + + + +LE VG+
Sbjct: 83 KADGKPAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAM-RLLERVGIDR 141
Query: 147 GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRK 206
+ L YPHE SGG QRV IA A+ P ++ DEPT+ALD++ QAQIL+LL L+ +
Sbjct: 142 AKSRLRSYPHEYSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILHLLEELRSE 201
Query: 207 FNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALH 266
+ L +SHD+ V+ ++DR +MY GK+VE + + + HPY L+ P +
Sbjct: 202 TGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLE-RAAHPYARALIGCMPTI- 259
Query: 267 PSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYP 325
+ V + G VP N+P GC +H RCP +++C P V + H AC++P
Sbjct: 260 DADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHP 318
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 180 bits (451), Expect = 3e-44
Identities = 108/298 (36%), Positives = 164/298 (54%), Gaps = 13/298 (4%)
Query: 36 ISINIRKGETFGLAGESGCGKSTFGRLLLRLI----EPTEGSIYFDGIDITKLDKDEMRK 91
+++ +RKG G+AGESG GKST + + R + E T G +Y D DI +++ +++R+
Sbjct: 1 MNLRVRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRR 60
Query: 92 LRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH 150
+R R + Q ++LNP I L H L + E D+I ++ V L E
Sbjct: 61 IRATRFSFIPQAAMNALNPVKRIRYQFYDLLIAHGLQPEKNE--DRIQAAIKMVRLRENV 118
Query: 151 LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLT 210
L +PHELSGG QRV IA +++ PD V+LDEPT+ LD+ VQ +IL L +QR+ LT
Sbjct: 119 LESFPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSGLT 178
Query: 211 YLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKR 270
+FI+HD+S+L ++D I ++Y G++VE D+ + HPY LL S P + +
Sbjct: 179 MIFITHDLSILYEIADEIAMIYAGEIVEFGPRDEM-LNDPQHPYNFLLLRSMPRIGAKRG 237
Query: 271 TSRKVI-LTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC-HYPD 326
T ++I G N GC+F+ RCPF +C + P L H+ C YP+
Sbjct: 238 TGYRLIGNPGNFREDFN---GCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRCLRYPE 292
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 178 bits (448), Expect = 6e-44
Identities = 113/309 (36%), Positives = 167/309 (53%), Gaps = 13/309 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT----EGSIYFDG-IDITKL 84
+ + +SI+I + + G+AGESG GKST ++ + P GSI D DI +
Sbjct: 22 IKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPPLYVERGSIIVDSKYDILSM 81
Query: 85 DKDEMRKLRRRM-GIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEA 143
+DE+ K+R + V Q ++SLNP + +T L+ + D + LE
Sbjct: 82 SRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKAKGM--DYYANIDVVYNTLEE 139
Query: 144 VGLGEEH-LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVN 202
VGL + L YP +LSGG QRV IA +++ NP +++DEPT+ LD+ VQ +IL LL
Sbjct: 140 VGLTDRQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIMDEPTTGLDVVVQYEILKLLKK 199
Query: 203 LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLST 262
+Q++ +LT + ISHDI++L +SD I +MY G++VE + + E YHPYT LL S
Sbjct: 200 IQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGKYNTLLE-EAYHPYTYLLLSSV 258
Query: 263 PALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
P + R + + G+ I P GC F RCPFVT CK+ P +V K + C
Sbjct: 259 PTVR--SRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTCKEVPPQIVAYDKFGFYKC 316
Query: 323 -HYPDKTRE 330
YP+ E
Sbjct: 317 IRYPEWRNE 325
>gi|10954941 Probable accB [Agrobacterium tumefaciens]
>gi|6498294|dbj|BAA87746.1| (AB016260) Probable accB
[Agrobacterium tumefaciens]
Length = 321
Score = 176 bits (443), Expect = 2e-43
Identities = 104/299 (34%), Positives = 161/299 (53%), Gaps = 17/299 (5%)
Query: 33 VDGISINIRKGETFGLAGESGCGKS----TFGRLLLRLIEPTEGSIYFDGIDITKLDKDE 88
++G+S ++ G+T GL GESGCGKS + L R I T G+I +L+
Sbjct: 31 INGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTI--------ELNSGP 82
Query: 89 MRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGL-- 146
+ + +++QDP SSLNP +I L+ L H+ E + + + + +LE VG+
Sbjct: 83 KADGKPAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAM-RLLERVGIDR 141
Query: 147 GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRK 206
+ L YPHE SGG QRV IA + P ++ DEPT+ALD++ QAQIL+LL L+ +
Sbjct: 142 AKSRLRSYPHEFSGGMNQRVMIATRSLAKPKLMIADEPTTALDVTTQAQILHLLEELRSE 201
Query: 207 FNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALH 266
+ L +SHD+ V+ ++DR +MY GK+VE + + + HPY L+ P +
Sbjct: 202 TGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLE-HAAHPYARALIGCMPTI- 259
Query: 267 PSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYP 325
+ V + G VP N+P GC +H RCP +++C P V + H AC++P
Sbjct: 260 DADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHP 318
>dbj|BAB05797.1| (AP001514) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 244
Score = 175 bits (440), Expect = 5e-43
Identities = 100/235 (42%), Positives = 147/235 (62%), Gaps = 16/235 (6%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+V + ++K + +GG F ++ + ++ IS R GE G+ GESG GKST GRLLL +
Sbjct: 2 LVVKGVEKSY-TKGGFFSKEKQKI--LNHISFECRHGECLGIIGESGSGKSTLGRLLLGI 58
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
+P G IYF+G +K E R +R + VFQD SS+NP T+ + PL+ +
Sbjct: 59 EKPDRGHIYFEG------NKVEERSVRSGNISAVFQDYTSSINPFFTVETAIMEPLKGKK 112
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
A+S K+ +L+ VGL + +YPHELSGG++QRV IARAI T P +VLDE
Sbjct: 113 AAKS------KVDYLLKQVGLHPSYKKKYPHELSGGEVQRVCIARAISTEPKCIVLDEAI 166
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
S+LD+S+Q Q+L+LL+ L+R + ++YLFI+HDI Y+ DRI I G++ EI+
Sbjct: 167 SSLDVSIQTQVLDLLIELKRIYQMSYLFITHDIQAAAYICDRIMIFRHGQIEEIV 221
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 175 bits (438), Expect = 9e-43
Identities = 107/277 (38%), Positives = 164/277 (58%), Gaps = 18/277 (6%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
++LK YF G+ K AVDG+S ++K +T + GESG GKS +L LIE
Sbjct: 6 KDLKTYFFTDKGVNK-------AVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEK 58
Query: 70 ----TEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
GSI F G D+ +L + +M+K R ++G++FQ+P +SLNP T+ + L+I
Sbjct: 59 PGKIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKI 118
Query: 124 HRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
H + +++E+ +++V LE VG+ + YP LSGGQ QRV IA A++ P+ ++
Sbjct: 119 HHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIA 178
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DEPT+ALD+++QAQIL L+ LQ+K + LFI+HD+ V+ ++D + +MY G VVE S
Sbjct: 179 DEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQAS 238
Query: 242 IDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILT 278
+ + HPYT LL + P P K +K + T
Sbjct: 239 AKEL-FADPRHPYTKALLNAIP--KPGKEYRKKRLET 272
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 174 bits (436), Expect = 2e-42
Identities = 107/277 (38%), Positives = 163/277 (58%), Gaps = 18/277 (6%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
++LK YF G+ K AVDG+S ++K +T + GESG GKS +L LIE
Sbjct: 6 KDLKTYFFTDKGVNK-------AVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEK 58
Query: 70 ----TEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
GSI F G D+ +L + +M+K R ++G++FQ+P +SLNP T+ + L+I
Sbjct: 59 PGQIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKI 118
Query: 124 HRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
H +++E+ +++V LE VG+ + YP LSGGQ QRV IA A++ P+ ++
Sbjct: 119 HHPNLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIA 178
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DEPT+ALD+++QAQIL L+ LQ+K + LFI+HD+ V+ ++D + +MY G VVE S
Sbjct: 179 DEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQAS 238
Query: 242 IDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILT 278
+ + HPYT LL + P P K +K + T
Sbjct: 239 AKEL-FADPRHPYTKALLSAIP--KPGKEYRKKRLET 272
>emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi]
Length = 330
Score = 173 bits (435), Expect = 2e-42
Identities = 104/308 (33%), Positives = 168/308 (53%), Gaps = 15/308 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
V AVD +SIN+ +GE GL GESG GKS + + + + T FD +D+ +L
Sbjct: 20 VKAVDRVSINLNEGEIRGLVGESGSGKSLIAKAICGINKENWRITADRFRFDDVDMLQLT 79
Query: 86 KDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD----KIVEI 140
+ RKL R M ++FQ+P+S L+P + L + + ++++ + +E+
Sbjct: 80 PPQRRKLVRHNMSMIFQEPQSCLDPSARVGRQLIQSIPGWTYKGRWWQRFNWRKRRAIEL 139
Query: 141 LEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILN 198
L VG+ + + +P+EL+ G+ Q+V IA A+ P ++ DEP +A++ + QAQI
Sbjct: 140 LHRVGIKDHKDVMRSFPYELTEGECQKVMIAIALANQPRLLIADEPNNAMEATTQAQIFR 199
Query: 199 LLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYL 258
LL L + N T L ISHD+ + +DRI ++Y G+ VE D+ +HPYT L
Sbjct: 200 LLSRLNQNNNTTILLISHDLQTMSKWADRINVLYCGQTVESAVSDELISAP-HHPYTQAL 258
Query: 259 LLSTPALHPS-KRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKD 317
+ + P S SR L G +PS ++P GCR RCP+ ++C PPL+ + ++
Sbjct: 259 IRAMPDFGCSLPHKSRLNTLPGAIPSLAHLPVGCRLGPRCPYSQKQCM-TAPPLIPV-RN 316
Query: 318 HYVACHYP 325
H+ ACH+P
Sbjct: 317 HWYACHFP 324
>sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|7445934|pir||E64877 peptide transport system
ATP-binding protein sapF - Escherichia coli
>gi|470683|gb|AAA17671.1| (U08190) Shows similarity with
ATP-binding proteins from other ABC-transport operons,
Swiss Prot Accession Numbers P24137, P08007, P04285,
P24136 [Escherichia coli] >gi|1279404|emb|CAA65941.1|
(X97282) SapF protein [Escherichia coli]
>gi|1742103|dbj|BAA14843.1| (D90766) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1742112|dbj|BAA14851.1| (D90767) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1787547|gb|AAC74372.1| (AE000227) putative
ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 268
Score = 167 bits (418), Expect = 2e-40
Identities = 86/236 (36%), Positives = 149/236 (62%), Gaps = 6/236 (2%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
++ + NL K F R G F+++ V AV +S +R+G+T + GE+G GKST ++
Sbjct: 2 IETLLEVRNLSKTFRYRTGWFRRQT--VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKM 59
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L +IEPT G + ID L + +R+ ++FQDP +SLNPR I L PL
Sbjct: 60 LAGMIEPTSGELL---IDDHPLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLR 116
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
++ E E+ + +I+E + VGL +H+S YPH L+ GQ QR+ +ARA+I P ++ D
Sbjct: 117 LNTDLEPEQRR-KQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIAD 175
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
E ++LD+S+++Q++NL++ LQ K ++Y++++ I +++++SD++ +M+ G+VVE
Sbjct: 176 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVE 231
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 165 bits (414), Expect = 6e-40
Identities = 110/308 (35%), Positives = 163/308 (52%), Gaps = 16/308 (5%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT------EGSIYFDGIDITK 83
VHA++ +S+ I +GE GL GESG GKS L++RL+ PT G I G D+
Sbjct: 22 VHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLL-PTGSYCVHRGQISLLGEDVLN 80
Query: 84 LDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILE 142
+ ++R+ R R+ ++FQ+P ++LNP I + + H+ S E K +++LE
Sbjct: 81 AREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPI-SRREARAKAIDLLE 139
Query: 143 AVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLL 200
+ + + E +SRYP ELSGG QRV IA A P ++ DEPT+ALD++VQ Q+L LL
Sbjct: 140 EMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLL 199
Query: 201 VNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI-LSIDDFRKGEIYHPYTAYLL 259
+ R LFISHD++V+ + D + +MY G V+E ++ D HPYT LL
Sbjct: 200 KHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTADVIHHPR--HPYTIGLL 257
Query: 260 LSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHY 319
P H R I G VP+ ++P GC F RC +C++ +
Sbjct: 258 QCAPE-HGVPRQLLPAI-PGTVPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQR 315
Query: 320 VACHYPDK 327
AC YP +
Sbjct: 316 CACWYPQQ 323
>pir||A82876 oligopeptide transport system permease protein UU560 [imported] -
Ureaplasma urealyticum
>gi|6899566|gb|AAF30973.1|AE002154_9 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 506
Score = 165 bits (413), Expect = 8e-40
Identities = 104/311 (33%), Positives = 171/311 (54%), Gaps = 21/311 (6%)
Query: 37 SINIRKGETFGLAGESGCGKSTFGRLLLRL------IEPTEGSIYFDGI-DITKLDKDEM 89
S+ +GE + GESG GKS LL L +E + +Y + + D + D ++
Sbjct: 186 SVQFYEGEVHAIIGESGSGKSVITSLLYGLAGKNANVEEGKILLYNNEVQDFSFKDWEKS 245
Query: 90 RKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG-- 147
R L + + VFQ+P S+LNP M I + + I+ + ++ +E Y+K +E L+ +
Sbjct: 246 RYLGKVISAVFQNPMSTLNPTMKIGKQIMEGMLINGIVKTRKEAYNKSIEYLKLTKINNP 305
Query: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
EE + YPHELSGG +QRV IA + +P +VLDEPT+ALD +VQA +L+++ LQ KF
Sbjct: 306 EEIMELYPHELSGGMIQRVVIASIVSLHPKILVLDEPTTALDPTVQALVLDVIRELQEKF 365
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEI----YHPYTAYLLLSTP 263
+ +FI+HD+ V+ +++ I IMY G+++E + ++ EI HPYT L++S P
Sbjct: 366 KMCIIFITHDLGVVASIANYISIMYAGQIIE-----EGQRDEILWYPQHPYTWGLIMSMP 420
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
++ + R + G VPS +N G F +R + + + EP + + + H V
Sbjct: 421 DVN---KGDRLATIKGSVPSRLNDIVGDAFAIRNDYALTRDFEHEPEMYHVSETHRVKSA 477
Query: 324 YPDKTREELGP 334
D+ E+ P
Sbjct: 478 LLDERAEKYTP 488
>sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|628821|pir||S39589 peptide transport system
ATP-binding protein sapF - Salmonella typhimurium
>gi|414212|emb|CAA52288.1| (X74212) sapF [Salmonella
typhimurium]
Length = 268
Score = 164 bits (411), Expect = 1e-39
Identities = 86/236 (36%), Positives = 148/236 (62%), Gaps = 6/236 (2%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
++ + NL K F R G F+++ V AV +S +R+ +T + GE+G GKST ++
Sbjct: 2 VETLLEVRNLSKTFRYRTGWFRRQT--VDAVKPLSFTLRERQTLAIIGENGSGKSTLAKM 59
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L +IEPT G + ID L + +R+ ++FQDP +SLNPR I L PL
Sbjct: 60 LAGMIEPTSGELL---IDDHPLHYGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLR 116
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
++ E E+ + +IVE + VGL +H+S YPH L+ GQ QR+ +ARA+I P ++ D
Sbjct: 117 LNTDLEPEQRR-KQIVETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIAD 175
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
E ++LD+S+++Q++NL++ LQ K ++Y++++ I +++++SD++ +M+ G+VVE
Sbjct: 176 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVE 231
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 163 bits (408), Expect = 3e-39
Identities = 103/315 (32%), Positives = 165/315 (51%), Gaps = 15/315 (4%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDG 78
FK +V AVD +S+ + +GE GL GESG GKS + + + + T + FD
Sbjct: 13 FKTSEGWVKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKDNWRVTADRMRFDD 72
Query: 79 IDITKLDKDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH----RLAESEEEK 133
ID+ +L E RKL + ++FQ+P+S L+P + L + + R + +
Sbjct: 73 IDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRLGWR 132
Query: 134 YDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
+ +E+L VG+ + E + +P+EL+ G+ Q+V IA A+ P ++ DEPT++++ +
Sbjct: 133 KRRAIELLHRVGIKDHKEPMRSFPYELTDGECQKVMIAIALANQPRLLIADEPTNSMEPT 192
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
QAQI LL L + N T L ISHD+ +L +D+I ++Y G+ VE D +
Sbjct: 193 TQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKDLVTMP-H 251
Query: 252 HPYTAYLLLSTPALHPS-KRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPP 310
HPYT L+ + P + SR L G +P +P GCR RCP+ ++C P
Sbjct: 252 HPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC--IITP 309
Query: 311 LVEIKKDHYVACHYP 325
+ K+H ACH+P
Sbjct: 310 RLTGAKNHLYACHFP 324
>pir||E72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980511|gb|AAD35121.1|AE001690_15 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 268
Score = 163 bits (408), Expect = 3e-39
Identities = 99/264 (37%), Positives = 154/264 (57%), Gaps = 9/264 (3%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+V +NL K F + G F ++ + AV +S +++ E L GESG GK+T +++LRL
Sbjct: 4 LVVKNLTKIFSL--GFFSKRR--IEAVKNVSFEVKEKEIVSLVGESGSGKTTTAKMILRL 59
Query: 67 IEPTEGSIYFDGIDITK--LDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEI- 123
+ PT G IYF+G DI K D++ + + RR++ VFQDP +S NP + TL + + +
Sbjct: 60 LPPTSGEIYFEGKDIWKDIKDRESLVEFRRKVHAVFQDPFASYNPFYPVERTLWQAISLL 119
Query: 124 HRLAESEEEKYDKIVEILEAVGLG-EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+++E + I E L VG+ ++ L +YPH++SGGQ QR+ IAR I P +V D
Sbjct: 120 ENKPSNKKEALELIKESLFRVGIDPKDVLGKYPHQISGGQKQRIMIARCWILRPLLIVAD 179
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
EPTS +D S + I+ LL L+ + + +FI+HD+ + Y+SD I +M G++VE
Sbjct: 180 EPTSMIDASSRGGIIKLLEELREEQGTSIIFITHDLGLAYYVSDNIFVMKNGEIVE-RGH 238
Query: 243 DDFRKGEIYHPYTAYLLLSTPALH 266
D E H YT L+ S P L+
Sbjct: 239 PDKVVLEPTHEYTKLLVGSIPKLY 262
>gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-binding; OppD1
[Halobacterium sp. NRC-1]
Length = 267
Score = 162 bits (407), Expect = 4e-39
Identities = 89/259 (34%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Query: 79 IDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKI 137
+D+T L + ++ +R +R+ +FQ+P++ LNP T+ + + IH + E ++
Sbjct: 1 MDLTTLSETALQDVRGKRISHIFQNPQNGLNPVYTVGRQIGEAIRIHDHGDPEVPVQRQV 60
Query: 138 VEILEAVGLGEE--HLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQ 195
V++L+ G+ E + YPHE SGG QRV IA A+ +PD ++ DEPT+ALD+++Q Q
Sbjct: 61 VDLLDKTGIPEASARVDDYPHEFSGGMKQRVLIAMALACDPDLLIADEPTTALDVTIQGQ 120
Query: 196 ILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYT 255
IL LL +LQ + ++ +F++HD+ V+ ++DR+ +MY GKV+E +++D + HPYT
Sbjct: 121 ILRLLEDLQAEHDMGIIFVTHDLGVVSEIADRVVVMYAGKVMETGTVEDIFRNP-SHPYT 179
Query: 256 AYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKD-EEPPL--V 312
L+ P R + G +P + P GCRF RC T+ C+ ++PPL V
Sbjct: 180 RALMDCLPG-----RGGSMDRIEGSLPDVTDPPAGCRFSPRCEHATEACRSGDQPPLWGV 234
Query: 313 EIKKDHYVACHYPDKTREE 331
+ H +C Y D +E
Sbjct: 235 DDGDTHEASCVYYDAEHDE 253
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 162 bits (405), Expect = 7e-39
Identities = 109/363 (30%), Positives = 180/363 (49%), Gaps = 48/363 (13%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL---IEPTEGSIYFDGI 79
FK K+ + AV G+ + ++KG G+ GESG GKS + ++ + T + F I
Sbjct: 31 FKVKDGIMQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDGAKTTAKLMNFKNI 90
Query: 80 DITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTI------------------------- 113
DI+K+ K + + R + + QDP SLNP MTI
Sbjct: 91 DISKMKKHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIYVSCKRRYYQTKSDLKY 150
Query: 114 --------YDTLKRPL----EIHRLAESEEEKYDKIVEILEAVGL--GEEHLSRYPHELS 159
DT K L E ++ ++ + K +EIL +G+ E+ L +P E S
Sbjct: 151 DLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFS 210
Query: 160 GGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDIS 219
GG QR+ IA A+ T PD ++ DEPT+ALD+++QA+ LNL+ L+ N+T +FISH+IS
Sbjct: 211 GGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIFISHNIS 270
Query: 220 VLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTG 279
++ D + +MY G++VE +++ + HPYT L+ S P + + + + G
Sbjct: 271 LIANFCDFVYVMYAGRLVEKGLVEEIFTNPV-HPYTWALMASIP--EGTDKNAPLTSIPG 327
Query: 280 EVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH--YPDKTREELGPLVR 337
+P+ ++ P G F R F + +PP ++ + H A +P + E+ V+
Sbjct: 328 YIPNMLSPPKGDAFAARNQFALAIDFEHQPPFFDVTETHKAATWLLHPQAPKVEMPADVK 387
Query: 338 EKL 340
EK+
Sbjct: 388 EKI 390
>sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIE
>gi|98018|pir||S11152 oligopeptide transport protein
amiE - Streptococcus pneumoniae
>gi|47346|emb|CAA35216.1| (X17337) AmiE protein
[Streptococcus pneumoniae]
Length = 355
Score = 161 bits (403), Expect = 1e-38
Identities = 103/336 (30%), Positives = 177/336 (52%), Gaps = 29/336 (8%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT----EGSIYFDG 78
F ++ + A+ G+S+ + +GE L GESG GKS + ++E EGSI + G
Sbjct: 18 FDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFRGMLEENGRIAEGSIDYRG 77
Query: 79 IDITKLD--KDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDK 136
D+T L KD + ++ +FQDP +SL+P TI + + H+ ++E K +
Sbjct: 78 QDLTALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAK-EL 136
Query: 137 IVEILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
++ + VG+ + + YP + SGG QR+ IA A+ PD ++ DEPT+ALD+++QA
Sbjct: 137 AIDYMNKVGIPDADRRFNEYPFQYSGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQA 196
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
QI++LL +LQ +++ T +FI+HD+ V+ ++D++ +MY G++VE ++++ + HPY
Sbjct: 197 QIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVEYGTVEEVFY-DPRHPY 255
Query: 255 TAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEI 314
T LL S P L K + G PS G F +R + Q +++ P +
Sbjct: 256 TWSLLSSLPQLADDKGDLYSI--PGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSV 313
Query: 315 KKDHY-----------------VACHYPDKTREELG 333
+ H+ V + DK RE++G
Sbjct: 314 SETHWAKTWLLHEDAPKVEKPAVIANLHDKIREKMG 349
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 161 bits (402), Expect = 2e-38
Identities = 101/321 (31%), Positives = 168/321 (51%), Gaps = 15/321 (4%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDG 78
FK + +V AVD +S+ + +GE GL GESG GKS + + + + T + FD
Sbjct: 13 FKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD 72
Query: 79 IDITKLDKDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD-- 135
ID+ +L E RKL + ++FQ+P+S L+P + L + + +++
Sbjct: 73 IDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWR 132
Query: 136 --KIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
+ +E+L VG+ + + + +P+EL+ G+ Q+V IA A+ P ++ DEPT++++ +
Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPT 192
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
QAQI LL L + N T L ISHD+ +L +D+I ++Y G+ VE + +
Sbjct: 193 TQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMP-H 251
Query: 252 HPYTAYLLLSTPALHPS-KRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPP 310
HPYT L+ + P + SR L G +P +P GCR RCP+ ++C P
Sbjct: 252 HPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC--IVTP 309
Query: 311 LVEIKKDHYVACHYPDKTREE 331
+ K+H ACH+P +E
Sbjct: 310 RLTGAKNHLYACHFPLNMEKE 330
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 159 bits (399), Expect = 3e-38
Identities = 102/300 (34%), Positives = 165/300 (55%), Gaps = 13/300 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT----EGSIYFDGIDITKLD 85
+ AV+ +S + KGE G+ GESG GK+T +LR I P G + F+G+DI +
Sbjct: 63 IKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIRPPGKIISGKVIFNGMDIFSMT 122
Query: 86 KDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
DE RKL + + V Q +++LNP + I + H A+ ++ ++ E+L+ V
Sbjct: 123 IDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEAISHGEAD-KKRVIERASELLKLV 181
Query: 145 GLGEEH-LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNL 203
GL L YP +LSGG QRV IA +++ NP +++DEPTSALD+ Q +L L+ N+
Sbjct: 182 GLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLILMDEPTSALDMLNQELLLKLIKNI 241
Query: 204 QRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTP 263
++ +T ++++HDI + +++R+ +MY G V+E ++ K + +PYT+ L+ S P
Sbjct: 242 NQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEEGKTEEIIKSPL-NPYTSLLVSSIP 300
Query: 264 ALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
+L + KVI ++ GC F RC +CK EE P + + D V CH
Sbjct: 301 SL----KGEVKVINVPLDEPLVSKEKGCPFLARCSKAFGRCK-EELPEIRLVYDRKVRCH 355
>gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae]
Length = 330
Score = 159 bits (397), Expect = 6e-38
Identities = 101/321 (31%), Positives = 167/321 (51%), Gaps = 15/321 (4%)
Query: 23 FKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDG 78
FK + +V AVD +S+ + +GE GL GESG GKS + + + + T + FD
Sbjct: 13 FKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD 72
Query: 79 IDITKLDKDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKY--- 134
ID+ L E RKL + ++FQ+P+S L+P + L + + +++
Sbjct: 73 IDLLGLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFVWR 132
Query: 135 -DKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDIS 191
+ +E+L VG+ + + + +P+EL+ G+ Q+V IA A+ P ++ DEPT++++ +
Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPT 192
Query: 192 VQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY 251
QAQI LL L + N T L ISHD+ +L +D+I ++Y G+ VE + +
Sbjct: 193 TQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMP-H 251
Query: 252 HPYTAYLLLSTPALHPS-KRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPP 310
HPYT L+ + P + SR L G +P +P GCR RCP+ ++C P
Sbjct: 252 HPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC--IVTP 309
Query: 311 LVEIKKDHYVACHYPDKTREE 331
+ K+H ACH+P +E
Sbjct: 310 RLTGAKNHLYACHFPLNMEKE 330
>pir||B64551 oligopeptide ABC transporter, ATP-binding protein - Helicobacter
pylori (strain 26695) >gi|2313342|gb|AAD07317.1|
(AE000544) oligopeptide ABC transporter, ATP-binding
protein (oppD) [Helicobacter pylori 26695]
Length = 516
Score = 156 bits (391), Expect = 3e-37
Identities = 99/261 (37%), Positives = 148/261 (55%), Gaps = 10/261 (3%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
+++KDF V K++F + +L + ++ +++ E G+ GESG GKS+
Sbjct: 264 LEVKDFSVYYLQKRFF--------RPSLKKPLIASVNFSLKAKENIGIIGESGSGKSSLA 315
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
LL+L G G + L+ + R+ + +VFQDP +SLNPR++I L
Sbjct: 316 LGLLKLAL-NSGEEKILGQSVGSLNSKAFKPYRKILQMVFQDPYASLNPRLSIQSILTEA 374
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
L S+EE + LE V L E L+ Y +ELSGG+ QRV+IARAI P ++
Sbjct: 375 LRFAYPKASKEEWHHLAKLCLEEVCLSHELLNSYAYELSGGERQRVAIARAIALKPKIIL 434
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
LDEPTSALD S+Q +L LL++LQ K +L+YLFISHD+ V++ D++ ++ GKVVE+
Sbjct: 435 LDEPTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVISEGKVVEMN 494
Query: 241 SIDDFRKGEIYHPYTAYLLLS 261
+I + H YT LL S
Sbjct: 495 TIKEVFDNP-KHAYTKRLLES 514
Score = 141 bits (351), Expect = 1e-32
Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL---IEPTEGSIYFDGIDITKLDKDE 88
++ I+I++ E + GESG GKS+ +++RL +P G + F+ ++ K ++
Sbjct: 16 SLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEEF 75
Query: 89 MRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG 147
M+ LR + + QDP SSLNP I + +H S+ ++++ ++ V L
Sbjct: 76 MQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMKQVQLD 135
Query: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
E+ L RYP+ELSGGQ QRV IA II P ++ DEPT+ALD +Q QIL+L L +
Sbjct: 136 EKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSAEK 195
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEI-LSIDDFRKGEIYHPYTAYLL 259
N+ LFISHD+ ++ ++DR+ ++ G++VE L+ D F + H Y+ L+
Sbjct: 196 NIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFNDPK--HEYSKLLI 246
>gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport protein D [Thermotoga
maritima]
Length = 277
Score = 155 bits (388), Expect = 7e-37
Identities = 100/279 (35%), Positives = 155/279 (54%), Gaps = 14/279 (5%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ I +NLK Y+ + L+ K + V AVD +S++I E +G+AGESGCGKST +
Sbjct: 1 METLISGKNLKAYYVL--DLWGSKKV-VKAVDNVSLDILPNEIYGIAGESGCGKSTLLKA 57
Query: 63 LLRLIEPT----EGSIYFD----GIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTI 113
LL L++P +G + ++ ++T L + +RKLR + + Q LNP +
Sbjct: 58 LLALLDPPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRV 117
Query: 114 YDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAII 173
DT L H + + +E D V+ L+ +GL E L+ +PH+LSGG QRV+IA A +
Sbjct: 118 RDTFIEILSSH-VKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVTIALATV 176
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P + DEPT+ALD+ Q ++ L+ +Q T + ++HD+ V ++ R+ IMY
Sbjct: 177 LKPRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYA 236
Query: 234 GKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTS 272
GK+VE + K + HPYT YL+ S PA+ K S
Sbjct: 237 GKIVEEGPTLEIFKNPL-HPYTRYLIQSLPAIGDKKLRS 274
>pir||E71957 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4154751|gb|AAD05811.1| (AE001461) ABC
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 516
Score = 155 bits (387), Expect = 9e-37
Identities = 99/261 (37%), Positives = 147/261 (55%), Gaps = 10/261 (3%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
+++KDF V K++F + +L + + +++ E G+ GESG GKS+
Sbjct: 264 LEVKDFSVYYLQKRFF--------RPSLKKPLIASVDFSLKAKENIGIIGESGSGKSSLA 315
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
LL+L G G + L+ + R+ + +VFQDP +SLNPR++I L
Sbjct: 316 LGLLKLAL-NSGEEKILGQSVGLLNSKAFKPYRKILQMVFQDPYASLNPRLSIQSILIEA 374
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
L S++E + LE V L E L+ Y +ELSGG+ QRV+IARAI P ++
Sbjct: 375 LRFAYPKASQQEWHHLAELCLEEVCLNPELLNFYAYELSGGERQRVAIARAIALKPRIIL 434
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
LDEPTSALD S+Q +L LL+NLQ K +L+YLFISHD+ V++ DR+ ++ GK+VE
Sbjct: 435 LDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIKAFCDRVLVVSEGKIVETG 494
Query: 241 SIDDFRKGEIYHPYTAYLLLS 261
+I++ H YT LL S
Sbjct: 495 AIEEVFDNP-KHAYTKRLLES 514
Score = 141 bits (352), Expect = 1e-32
Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 4/211 (1%)
Query: 32 AVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL---IEPTEGSIYFDGIDITKLDKDE 88
++ I+I++ E + GESG GKS+ L++RL +P G I F+ ++ K +
Sbjct: 16 SLQNINISLSYSERVAIVGESGSGKSSIANLVMRLNPRFKPHNGEILFETTNLLKESEAF 75
Query: 89 MRKLRRRM-GIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG 147
M+ LR + + QDP SSLNP I + +H S+ ++++ ++ V L
Sbjct: 76 MQHLRGNIIAYIAQDPLSSLNPLHKIGKQMSEAYFLHHKNASQVLLKEQVLNAMKQVQLD 135
Query: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
E+ L RYP+ELSGGQ QRV IA II P ++ DEPT+ALD +Q QIL+LL L +
Sbjct: 136 EKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLLKQLSVEK 195
Query: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
N+ LFISHD+ ++ ++DR+ ++ G++VE
Sbjct: 196 NIALLFISHDLKAVKRLADRVYVLKKGEIVE 226
>pir||F82170 peptide ABC transporter, ATP-binding protein VC1684 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656200|gb|AAF94834.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 262
Score = 155 bits (387), Expect = 9e-37
Identities = 85/236 (36%), Positives = 139/236 (58%), Gaps = 6/236 (2%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + NL K F R G +++ HAV +S + G+T G G++G GKST R+
Sbjct: 1 MSALLEVTNLHKDFVTRSGFLRKQ--IQHAVKPVSFTLEAGQTIGFIGQNGSGKSTLARM 58
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L ++ PT G I +G + D KL R ++FQDP +SLNPR+ I L+ PL+
Sbjct: 59 LAGMVAPTGGEIRVNGELLEHKDYSTRCKLIR---MIFQDPNTSLNPRLQIGTILEGPLK 115
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ + E + ++ + L+ VGL EH YP L+ GQ QRV +ARA+I P ++ D
Sbjct: 116 -RNTSMTPEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIAD 174
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
E + LD+++++QILNL + LQ + ++++++S I V+++++D+I +M+ G VVE
Sbjct: 175 EALNGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVE 230
>emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi]
Length = 269
Score = 154 bits (385), Expect = 2e-36
Identities = 94/260 (36%), Positives = 149/260 (57%), Gaps = 9/260 (3%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
++ + NL K F R G F+++ +V AV +S +R+ +T + GE+G GKST ++
Sbjct: 2 VETLLEARNLTKTFRYRTGWFRRQ--HVQAVKSVSFTLRERQTLAIIGENGSGKSTLAKM 59
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L +I PT G + D + D R R RM I QD +SLNPR I L+ PL
Sbjct: 60 LSGVIPPTSGELVIDDHPLQYGDY-HYRSQRIRMSI--QDSATSLNPRQRIGQLLELPLR 116
Query: 123 IHR-LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
++ L E EK + L VGL +H + YPH L+ GQ QR+ +ARA+I P +V
Sbjct: 117 LNTDLTPQEREKAINLA--LRQVGLRADHATYYPHALAPGQKQRIGLARALILQPKVIVA 174
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DE ++LD+SV++QI+NL++ LQ K ++Y++++ + +++++SD+I +M G+VVE S
Sbjct: 175 DEVLASLDMSVRSQIINLMLELQEKHGISYIYVTQHLGMMKHISDQILVMQAGEVVERGS 234
Query: 242 IDDFRKGEIYHPYTAYLLLS 261
D + H T L+ S
Sbjct: 235 TADVLAAPL-HDLTKRLIAS 253
>dbj|BAA97047.1| (AB015765) compensate SapD [Vibrio alginolyticus]
Length = 263
Score = 153 bits (384), Expect = 2e-36
Identities = 92/269 (34%), Positives = 149/269 (55%), Gaps = 7/269 (2%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + +NL K F R LFK++ AV +S + G+T G G++G GKST R+
Sbjct: 1 MSALLEVDNLSKQFVTRSRLFKRQ--VNEAVKPVSFTLEPGQTIGFIGQNGSGKSTLARM 58
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L ++EP+ G I +G + D KL R ++FQDP +SLNPR+ I L+ PL+
Sbjct: 59 LAGVVEPSSGEIRVNGERLEHKDYATRCKLIR---MIFQDPNTSLNPRIQIGRILEGPLK 115
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ + ++ L VGL EH YP L+ GQ QRV +ARA+I P +V D
Sbjct: 116 -RNTNMPPDARMQRVKNTLLRVGLLPEHAYFYPQMLAAGQKQRVCLARALILQPSIIVAD 174
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
E + LD+++++QI+NL + LQ + L+++++S I ++++++D++ +M+ G+VVE
Sbjct: 175 EALNGLDMAMRSQIINLFLELQEEMGLSFVYVSQHIGIVKHITDKVMVMHEGEVVEFGET 234
Query: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKRT 271
+ HP T L+ S PS +T
Sbjct: 235 NQVLTSP-EHPITQRLVESHFYKAPSHQT 262
>emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 388
Score = 152 bits (380), Expect = 6e-36
Identities = 102/333 (30%), Positives = 171/333 (50%), Gaps = 32/333 (9%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
+H V G+ +++ +GE GL GESG GKS + L+ + E G I D I I + + +
Sbjct: 62 IHIVRGVDLDVHRGEIIGLVGESGSGKSVTSKTLINVNE--SGIISADQIQIGEYELTNI 119
Query: 90 RKLR-------RRMGIVFQDPKSSLNPRMTI----YDTLKRPLEIHRLAESEEEKYDKIV 138
+K + +++G + QDP +SLNP T+ D L + +E++ Y ++
Sbjct: 120 KKQKYWQYIRGQKIGYIPQDPLTSLNPTRTVGKQLLDALNNNEDWKNSTYTEKKNY--LI 177
Query: 139 EILEAVGL--GEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQI 196
+L+ GL E+ YPH LSGG QR+ I + P+ ++ DEPT+ALD +VQA +
Sbjct: 178 GLLKTFGLRSAEKIFYAYPHTLSGGMKQRIVITMVVALKPELIIADEPTTALDPTVQASV 237
Query: 197 LNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIY----H 252
L L ++++K ++ + ISH+ISV+ D I +MY G++VE K EI+ H
Sbjct: 238 LALFEDIRQKMGISIILISHNISVIAKFCDYIYVMYAGRIVE-----KGTKQEIFTNPAH 292
Query: 253 PYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLV 312
PYT L+ + P + + + G P N+P G F R + + +EPPL+
Sbjct: 293 PYTWALISAI----PESKDEKLYTIQGTPPDMANLPLGDPFVYRNDYALEIDYLKEPPLI 348
Query: 313 EIKKDHYVACHY--PDKTREELGPLVREKLKMY 343
I + H A P+ + E ++++L ++
Sbjct: 349 PITETHAAATWLLSPEAPKIEKSKELQKRLDLF 381
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 151 bits (377), Expect = 1e-35
Identities = 100/312 (32%), Positives = 158/312 (50%), Gaps = 23/312 (7%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
V AVD +S+ + +GE GL GESG GKS + ++ + + T + ID+ +L
Sbjct: 20 VKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWRVTADRMRLGNIDLLQLT 79
Query: 86 KDEMRK-LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD----KIVEI 140
E R+ + R + ++FQ+P + L+P + L + E++ + + +
Sbjct: 80 PRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTFEGRWWERFTWRKKQAIAL 139
Query: 141 LEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILN 198
L VG+ + +S YP+EL+ G+ Q+V IA AI P ++ DEPT+ +D Q+QIL
Sbjct: 140 LHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLIADEPTNDVDPITQSQILR 199
Query: 199 LLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYL 258
LL + + N + L I HD++ + +DRI +MY G+ VE E HPYTA L
Sbjct: 200 LLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESAETAKI-VAEPKHPYTAAL 258
Query: 259 LLSTPAL-----HPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVE 313
L + P H K S L G +P ++P GCR RCP+ ++C E P
Sbjct: 259 LKAMPDFSDWIPHKQKLQS----LPGSIPPLQHLPIGCRLGPRCPYAQRQC--VEVPHSR 312
Query: 314 IKKDHYVACHYP 325
K+H +CH+P
Sbjct: 313 WVKNHKFSCHFP 324
>pir||E81968 probable ABC transport ATP-binding subunit NMA0504 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379248|emb|CAB83797.1| (AL162753) putative ABC
transport ATP-binding subunit [Neisseria meningitidis
Z2491]
Length = 245
Score = 150 bits (376), Expect = 2e-35
Identities = 90/236 (38%), Positives = 137/236 (57%), Gaps = 11/236 (4%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I+ + + K++ R K + AV+ S+ IR GE FGL G SG GKST RL+ L
Sbjct: 2 IILDKVSKHYQTR-----DKTRFA-AVEPTSLEIRDGEIFGLMGYSGAGKSTLLRLINLL 55
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
P G + G ++T LD +R+ R+ +G+VFQ + +L T+ D + PLEI
Sbjct: 56 ERPDTGKVNVCGQELTALDAAALRQARQNIGMVFQ--QFNLLSNRTVADNVAFPLEI--A 111
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
E+ ++ E LE VGL E YP +LSGGQ QRV IARA+ P ++ DEPTS
Sbjct: 112 GWPSEKIKARVAECLEIVGL-TERAGHYPAQLSGGQKQRVGIARALAPKPQVILADEPTS 170
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
ALD + +L L ++ ++FN+T + ++H++SV++ + DR ++ GKVVEI+ +
Sbjct: 171 ALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKGKVVEIVEV 226
>pir||E81023 ABC transporter, ATP-binding protein NMB1948 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227207|gb|AAF42277.1| (AE002543) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 245
Score = 150 bits (375), Expect = 2e-35
Identities = 90/236 (38%), Positives = 137/236 (57%), Gaps = 11/236 (4%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I+ + + K++ R K + AV+ S+ IR GE FGL G SG GKST RL+ L
Sbjct: 2 IILDKVSKHYQTR-----DKTRFA-AVEPTSLEIRDGEIFGLMGYSGAGKSTLLRLINLL 55
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
P G + G ++T LD +R+ R+ +G+VFQ + +L T+ D + PLEI
Sbjct: 56 ERPDSGKVNVCGQELTALDAAALRQARQNIGMVFQ--QFNLLSNRTVADNVAFPLEI--A 111
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
E+ ++ E LE VGL E YP +LSGGQ QRV IARA+ P ++ DEPTS
Sbjct: 112 GWPSEKIKARVKECLEIVGL-TERAGHYPAQLSGGQKQRVGIARALAPKPQVILADEPTS 170
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
ALD + +L L ++ ++FN+T + ++H++SV++ + DR ++ GKVVEI+ +
Sbjct: 171 ALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKGKVVEIVEV 226
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 150 bits (374), Expect = 3e-35
Identities = 96/314 (30%), Positives = 163/314 (51%), Gaps = 15/314 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
+ VDG+++++ +GE GL GESG GKS +++ I+ T F +++ KL
Sbjct: 20 IKIVDGVNLSLNEGEISGLVGESGSGKSLIAKVICNAIKENWIITADRFRFHDVELLKLS 79
Query: 86 KDEMRKL-RRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEE----KYDKIVEI 140
++ RKL + + ++FQ+P S L+P I L + + + K + +E+
Sbjct: 80 PNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIPNWTFKNKWWKWFGWKKRRAIEL 139
Query: 141 LEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILN 198
L VG+ + ++ YP+EL+ G+ Q+V IA A+ P ++ DEPT+AL+ + Q+
Sbjct: 140 LHRVGIKDHRDIMASYPNELTEGEGQKVMIAMAVANQPRLLIADEPTNALESTTALQVFR 199
Query: 199 LLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYL 258
LL ++ + T L S+DI + D+I ++Y G+ E + + +HPYT L
Sbjct: 200 LLSSMNQNQGTTILLTSNDIKSISEWCDQISVLYCGQNTESAPTEILIESP-HHPYTQAL 258
Query: 259 LLSTPAL-HPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKD 317
+ + P P ++ L G P +P GCR RCPF +KC E+P ++IK+
Sbjct: 259 INAVPDFTQPLGFKTKLGTLEGTAPILEQMPIGCRLGPRCPFAQKKCM-EKPRRLKIKQ- 316
Query: 318 HYVACHYPDKTREE 331
H +CHYP RE+
Sbjct: 317 HEFSCHYPINLREK 330
>gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 371
Score = 149 bits (373), Expect = 4e-35
Identities = 90/233 (38%), Positives = 140/233 (59%), Gaps = 12/233 (5%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I ENL K +FK+ V AVD +SI I G FG+ G SG GK+TF RL+ L
Sbjct: 4 IRVENLSK-------IFKKGKTEVKAVDNVSITIDSGMAFGVLGPSGHGKTTFLRLIAGL 56
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
EPT G IYFD ++ + M +R + +VFQ+ +L P MT++D + PL++ ++
Sbjct: 57 EEPTSGYIYFDNEAVSSPRRVMMSPEKRGIAMVFQN--WALYPNMTVFDNIAFPLKLAKV 114
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+ + E +K+ E+ E +GL L+RYP ELSGGQ+QR +IARA++ +P ++LDEP S
Sbjct: 115 PKDKIE--NKVKEVSEELGLSGV-LNRYPKELSGGQMQRTAIARALVKDPKVLLLDEPFS 171
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
LD ++ L+ +QR+ LT L +SHD + + ++++ G++ GK +I
Sbjct: 172 NLDAQIRESARALVRKIQRERKLTTLIVSHDPADIFAIANKAGVIVNGKFAQI 224
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 148 bits (370), Expect = 9e-35
Identities = 98/314 (31%), Positives = 158/314 (50%), Gaps = 15/314 (4%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP----TEGSIYFDGIDITKLD 85
V AVD +S+ + +GE GL GESG GKS + ++ + + T + ID+ +L
Sbjct: 20 VKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVSKDNWRITADRMRLGNIDLLQLT 79
Query: 86 KDEMRK-LRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYD----KIVEI 140
E R+ + R + ++FQ+P + L+P + L + E++ + + +
Sbjct: 80 PKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESIPSRAFEGKWWERFKWRKKQAIAL 139
Query: 141 LEAVGLGEEH--LSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILN 198
L VG+ + + YP+EL+ G+ Q+V IA AI T P ++ DEPT+ LD Q+QIL
Sbjct: 140 LHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAIATKPKLLIADEPTNDLDPITQSQILR 199
Query: 199 LLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYL 258
LL + + N T L I HD++ + + RI +MY G+ VE HPYT L
Sbjct: 200 LLSRMNQLNNTTILLIGHDLATITQWAGRITVMYCGQSVESADTSKIIAAP-KHPYTDAL 258
Query: 259 LLSTPALHPSKRTSRKV-ILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKD 317
L + P + +K+ L G +P ++P GCR RCP+ ++C E P K+
Sbjct: 259 LKAMPDFNDWVPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYAQKQC--VEIPHTRRIKN 316
Query: 318 HYVACHYPDKTREE 331
H CH+P T ++
Sbjct: 317 HKFNCHFPLNTEKK 330
>emb|CAC00366.1| (AL160371) probable oligopeptide transport ATP-binding protein appf
[Leishmania major]
Length = 242
Score = 147 bits (368), Expect = 2e-34
Identities = 81/187 (43%), Positives = 116/187 (61%), Gaps = 4/187 (2%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
++ +L K+FP++GG+ ++ V AVDG+S ++ KGET G+ GESGCGKST RLL++L
Sbjct: 16 VIARDLVKHFPLKGGIPGRRAGAVRAVDGVSFDVLKGETLGVVGESGCGKSTTARLLMQL 75
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
G + FD + +++ R ++ +VFQD SSLNPR+TI +++ +H +
Sbjct: 76 TAQDSGELIFDAEXVGSAQL-PLKRYRSQVQMVFQDSYSSLNPRLTIEESIAFTARVHGI 134
Query: 127 AESEEEKYDKIVEILEAVGLGEEHL-SRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
E D+ +L VGL RYPHELSGGQ QRV+IARA++ P V+LDE
Sbjct: 135 --PAREAIDRARHLLGRVGLEPLRFGGRYPHELSGGQRQRVNIARALVLRPRLVILDEAV 192
Query: 186 SALDISV 192
SALD SV
Sbjct: 193 SALDKSV 199
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 146 bits (366), Expect = 3e-34
Identities = 94/301 (31%), Positives = 158/301 (52%), Gaps = 12/301 (3%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT---EGSIYFDGIDITKLDK 86
+ A++ + + KG++ G+ GE+G GK+T ++R + GSI+F+ DI K+D+
Sbjct: 19 IRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALPENAEYSGSIFFNNKDILKMDQ 78
Query: 87 DEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAV 144
+ RK R ++ I+ Q ++ NP + + L + + + + ++I + +
Sbjct: 79 ETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMMENDSNIDTSKASERIFYLFNQL 138
Query: 145 GLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQ 204
L E + P ELSGGQ QRV IA A++ +P+ V+ DEPT+ALD+ QA++++L+
Sbjct: 139 SLPPEIYKKLPDELSGGQRQRVVIASALLLDPELVIADEPTTALDVINQARVISLIKREI 198
Query: 205 RKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRK--GEIYHPYTAYLLLST 262
T ++I+HDI+V+ ++ ++ +Y G EI+ D RK E HPY+ LL S
Sbjct: 199 VDKQKTLIYITHDIAVVAGVAKKVLTLYAG---EIMEFGDSRKIFKEPLHPYSKGLLSSV 255
Query: 263 PALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVAC 322
P + K + + G+ P GC F RC CK E+P L + YVAC
Sbjct: 256 PDIRFGK-VKKVHYIPGDPPDLSKEIKGCPFAPRCSIAKDICKVEKPKLRYV-DGRYVAC 313
Query: 323 H 323
H
Sbjct: 314 H 314
>sp|P45289|SAPF_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|1075119|pir||E64134 peptide transport system
ATP-binding protein HI1642 - Haemophilus influenzae
(strain Rd KW20) >gi|1574490|gb|AAC23289.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapF)
[Haemophilus influenzae Rd]
Length = 269
Score = 138 bits (343), Expect = 1e-31
Identities = 77/229 (33%), Positives = 132/229 (57%), Gaps = 6/229 (2%)
Query: 10 ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP 69
E+L K F LF + +AVD +S + + +T + G +G GKST +++ +I P
Sbjct: 7 EDLTKTFKGHASLFGRNQF--NAVDKVSFTLERKQTLAIIGNNGSGKSTLVKMIAGIIPP 64
Query: 70 TEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAES 129
T G I F+ ++ D K R +VFQD S+ NPR+ I L PL + +
Sbjct: 65 TSGRILFNDRELQYQDAQSRAKHIR---MVFQDANSAFNPRLNIGQILDEPLSL-ATDWT 120
Query: 130 EEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALD 189
E ++ +KI E L VGL ++ + LS Q QRV++ARA+I P+ +++D+ LD
Sbjct: 121 ETQRNEKIFETLSLVGLYPDYTNLNIKHLSISQKQRVALARALILEPEIIIIDDAIGNLD 180
Query: 190 ISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
SV+ Q+LNL ++LQ++ ++Y+++ D+ V+++++D I +M GK++E
Sbjct: 181 ASVRIQLLNLTLDLQQRLGISYIYVGQDLGVIKHIADTIIVMDEGKMIE 229
>gb|AAK42960.1| ABC transporter, ATP binding protein (glucose) [Sulfolobus
solfataricus]
Length = 353
Score = 136 bits (338), Expect = 5e-31
Identities = 79/239 (33%), Positives = 139/239 (58%), Gaps = 16/239 (6%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I+ +N+ K F K V A+D ++INI GE FG+ G SG GK+TF R++ L
Sbjct: 4 IIVKNVSKVF---------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL 54
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
P+ G +YFD + K + R++G+VFQ +L P +T ++ + PL ++
Sbjct: 55 DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT--WALYPNLTAFENIAFPLTNMKM 112
Query: 127 AESE-EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
++ E ++ +++ +IL+ L+ +P ELSGGQ QRV++ARA++ +P ++LDEP
Sbjct: 113 SKEEIRKRVEEVAKILDI----HHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPF 168
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
S LD ++ L+ +Q + +T L +SHD + + ++DR+G++ GK+V++ +D
Sbjct: 169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
>sp|P75551|OPPF_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|2146481|pir||S73939 oligopeptide transport
ATP-binding protein oppF - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674315|gb|AAB96261.1| (AE000058) but
only N- and C-term; inbetween (500AA) seg and coil
[Mycoplasma pneumoniae]
Length = 851
Score = 135 bits (337), Expect = 6e-31
Identities = 66/131 (50%), Positives = 96/131 (72%), Gaps = 1/131 (0%)
Query: 135 DKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQA 194
+K+ E L++VGL EH RYPHE SGGQ QR++IARA+IT P ++ DE SALD+S+QA
Sbjct: 665 NKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQA 724
Query: 195 QILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPY 254
Q++N+L +L +K NLT LFI+HD+S++Q + +R+ IM+ GK+VE S D+ + HPY
Sbjct: 725 QVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHPV-HPY 783
Query: 255 TAYLLLSTPAL 265
T L+ ++P L
Sbjct: 784 TRSLIKASPKL 794
Score = 82.3 bits (200), Expect = 8e-15
Identities = 69/231 (29%), Positives = 105/231 (44%), Gaps = 20/231 (8%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K + + L F VRG FK A+D I + +G+ FG+ GESG GKST G+
Sbjct: 7 KQNPLVNVKALSMLFKVRGSFFK-------ALDEIDFTVNEGDFFGVIGESGSGKSTTGK 59
Query: 62 LLLRLIEPTEGSIYFDG--IDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKR 119
L+RL P+ G + I KL ++ L++ + +VFQDP SSLNP + +
Sbjct: 60 CLIRLNIPSGGKVEIANHLISGKKLTRENDHWLKQNVQMVFQDPYSSLNPTKNVLTVISE 119
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAII----TN 175
PL I + E ++Y K + L ++ L R EL Q ++ + T
Sbjct: 120 PLVITKTVYGEVKEYLKTLAKLSF--KTKKELLREDFELE-TQFYEKFFSKVLFHLETTI 176
Query: 176 PDFVVLDEPTSALDISVQAQIL----NLLVNLQRKFNLTYLFISHDISVLQ 222
F +L E + + IL +L+ L+++F L Y F S LQ
Sbjct: 177 NKFALLQESNNNSSAELAQTILGHTDDLIEALRQEFGLVYEFSSSQSEPLQ 227
>pir||T34822 ABC-transporter ATP binding protein - Streptomyces coelicolor
>gi|2815356|emb|CAA16479.1| (AL021530) ABC-transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 230
Score = 131 bits (326), Expect = 1e-29
Identities = 83/233 (35%), Positives = 133/233 (56%), Gaps = 8/233 (3%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+VTE + + VR + + + VHA+ G+S ++ +GE L G SG GK+T ++ L
Sbjct: 4 VVTETMVRVEDVRKS-YGRDSAAVHALRGVSFDVPRGELIALKGRSGSGKTTLLNIVGGL 62
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRR-RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
P G + DG D+ +LD+D + LRR R+G VFQ L P +T + + P+ + R
Sbjct: 63 DTPDAGRVEVDGRDLAELDEDGLLALRRDRVGFVFQS--FGLIPILTAAENVGVPMRLRR 120
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
A E E +++ +L VGL + H ++ P E+SGGQ QRV+IARA+ NP ++ DEPT
Sbjct: 121 AAARERE--ERVELLLSLVGLAD-HAAQRPGEMSGGQQQRVAIARALANNPALLIADEPT 177
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
LD ++ LL + R +T L +HD ++L ++DR+ + G++VE
Sbjct: 178 GQLDAETGHSVMELLRAVVRSEQVTALVATHDATLLD-LADRVLELRDGEIVE 229
>gi|11498586 osmoprotection protein (proV) [Archaeoglobus fulgidus]
>gi|7428829|pir||E69372 osmoprotection protein (proV)
homolog - Archaeoglobus fulgidus
>gi|2649615|gb|AAB90260.1| (AE001036) osmoprotection
protein (proV) [Archaeoglobus fulgidus]
Length = 361
Score = 131 bits (325), Expect = 2e-29
Identities = 82/234 (35%), Positives = 131/234 (55%), Gaps = 20/234 (8%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+V EN+ K + G F AV +++ + GE L G SG GK+T R++ RL
Sbjct: 9 VVLENVSKRY---GNFF--------AVRELNLTVEGGELLALIGPSGSGKTTTLRMINRL 57
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+EP EG + +G DI+++D +LRR +G V Q + L P M +++ + I +L
Sbjct: 58 VEPDEGRVLINGQDISEIDAV---RLRRNIGYVIQ--QIGLFPHMKVWENIGL---IPKL 109
Query: 127 AESEEEKY-DKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
EEEK ++ E+L+ V L E RYP +LSGGQ QRV +ARA+ NP +++DEP
Sbjct: 110 EGWEEEKIRQRVDELLKLVDLPIEFAERYPWQLSGGQQQRVGLARALALNPPLLLMDEPF 169
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
ALD ++ Q+ ++ + T +F++HD+ + DRI IM G++V++
Sbjct: 170 GALDPILRKQLQEEFARIKEELGKTIVFVTHDVEEAFRLGDRIAIMNEGRLVQV 223
>pir||F81348 ABC transport system ATP-binding protein Cj0774c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968220|emb|CAB73039.1| (AL139076) ABC transport
system ATP-binding protein [Campylobacter jejuni]
Length = 336
Score = 127 bits (315), Expect = 2e-28
Identities = 84/253 (33%), Positives = 141/253 (55%), Gaps = 29/253 (11%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +NLKKY+ K L ++ +S+ I+KGE + + G SG GKST R + L
Sbjct: 2 IKIKNLKKYYG--------KEL---VINDVSLEIKKGEIYAIVGHSGAGKSTLLRCINGL 50
Query: 67 IEPTEGSI-YFDGI--DITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
EGS+ FD D+++ E+R LR+ +G++FQ+ +L R +++ + PL
Sbjct: 51 ENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQN--FALMERKNVFENVAMPLRT 108
Query: 124 H------------RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARA 171
H + SE+E K+ +LE VGL ++ S YP ELSGGQ QRV+IARA
Sbjct: 109 HYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKS-YPRELSGGQKQRVAIARA 167
Query: 172 IITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIM 231
+ NP ++ DE TSALD + IL L+ + +F +T + ++H++ V++ ++ + ++
Sbjct: 168 LALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVKDIAQKALLL 227
Query: 232 YLGKVVEILSIDD 244
G+++ +ID+
Sbjct: 228 EHGQIIGSGAIDE 240
>pir||A82429 iron(III) ABC transporter, ATP-binding protein VCA0687 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658105|gb|AAF96587.1| (AE004398) iron(III) ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 351
Score = 127 bits (315), Expect = 2e-28
Identities = 76/241 (31%), Positives = 140/241 (57%), Gaps = 25/241 (10%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M+ ++F+V +N+ K F + + + I+KG L G SGCGK+T
Sbjct: 1 MEKQNFVVLKNICKRFGSNT-----------VIGNLDLEIKKGSLVTLLGPSGCGKTTVL 49
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKR 119
RL+ L +PT G I+ DG D+T+ R +++R + +VFQ +L P M++Y+ +
Sbjct: 50 RLVAGLEKPTSGQIFIDGEDVTE------RSIQQRDICMVFQS--YALFPHMSLYENVAY 101
Query: 120 PLEIHRLAESE-EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDF 178
L++ +L E ++ D+ ++I++ G+GE RY ++SGGQ QRV++ARA++ P
Sbjct: 102 GLKMLKLPSEEVRQRVDEALKIVDLEGMGE----RYVDQISGGQQQRVALARALVLKPKV 157
Query: 179 VVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
++ DEP S LD +++ + + LQ++F++T L+++HD + +SD + +M G +++
Sbjct: 158 LLFDEPLSNLDANLRRSMRETIRELQQRFDITSLYVTHDQAEAFAVSDTVIVMKQGDIMQ 217
Query: 239 I 239
I
Sbjct: 218 I 218
>pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A2 -
Methanococcus jannaschii >gi|1592327|gb|AAB99247.1|
(U67565) methyl coenzyme M reductase system, component
A2 (atwA) [Methanococcus jannaschii]
Length = 539
Score = 126 bits (314), Expect = 3e-28
Identities = 78/245 (31%), Positives = 133/245 (53%), Gaps = 21/245 (8%)
Query: 4 KDFIVTENLKKYF-PVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
+D I EN+ K++ V G+ K AVD +++NIR+ E FGL G SG GK+T ++
Sbjct: 285 EDIIKLENVSKHYCSVERGVIK-------AVDNVTLNIREREIFGLVGTSGAGKTTLAKI 337
Query: 63 LLRLIEPTEGSIYF----DGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLK 118
+ ++ P++G +F + +D+TK + +R +GI+FQ+ +L P TI + L
Sbjct: 338 IAGVLPPSKGKYWFRVGDEWVDMTKPGPMGRGRAKRYIGILFQE--YALYPHRTILENLT 395
Query: 119 RPLEIHRLAESEEEKYDKIVEILEAVGLGEEH----LSRYPHELSGGQLQRVSIARAIIT 174
+ + +E K V L +VG EE L +YPHELS G+ R ++A+ +I
Sbjct: 396 EAIGLEL---PDEFARMKAVYTLVSVGFSEEEAEEILDKYPHELSVGERHRCALAQVLIK 452
Query: 175 NPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG 234
P V+LDEPT +D + + + + + TY+ +SHD+ + + DR G+M G
Sbjct: 453 EPRVVILDEPTGTMDPITRNTVAESIHKSRIELEQTYIIVSHDMDFVLNVCDRAGLMRNG 512
Query: 235 KVVEI 239
K++++
Sbjct: 513 KLIKV 517
Score = 71.4 bits (172), Expect = 1e-11
Identities = 57/233 (24%), Positives = 105/233 (44%), Gaps = 35/233 (15%)
Query: 36 ISINIRKGETFGLAGESGCGKSTFGRLLLRL--IEPTEGSIYFD---------------- 77
IS + +GE+ G+ G+SG GKS +L + EPTEG I +
Sbjct: 27 ISFTLEEGESLGILGKSGAGKSVLLHMLRGMDGYEPTEGQIIYHVSYCEKCGYVDVPSKA 86
Query: 78 -------GIDITKL------DKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
G ++ K+ DK L+R++ I+ Q + + + + L+ +H
Sbjct: 87 GTPCKKCGNELKKIEVDFWNDKKYTYNLKRKIAIMLQRTFALYGEKTVLENILEA---LH 143
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+ +E D +++++ V L E ++ +LSGG+ QRV +AR I P + DEP
Sbjct: 144 QAGYEGKEAIDMALKLIKMVKL-EHRITHIARDLSGGEKQRVVLARQIAKEPFIFLADEP 202
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
T LD + + L L K ++ + SH V+ ++++ + G+++
Sbjct: 203 TGTLDPQTAKLVHSALKELVIKNKISLILTSHWPEVIAELTEKAIWLDKGEII 255
>gi|7524830 sulfate transport system permease protein [Chlorella vulgaris]
>gi|3023607|sp|P56344|CYSA_CHLVU PROBABLE SULFATE
TRANSPORT ATP-BINDING PROTEIN CYSA
>gi|7442559|pir||T07260 sulfate transport ATP-binding
protein - Chlorella vulgaris chloroplast
>gi|2224423|dbj|BAA57907.1| (AB001684) sulfate transport
system permease protein [Chlorella vulgaris]
Length = 236
Score = 126 bits (314), Expect = 3e-28
Identities = 81/238 (34%), Positives = 137/238 (57%), Gaps = 21/238 (8%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I+ EN+ K F G F+ A+D +++ I+ G GL G SG GKST R+L L
Sbjct: 3 ILIENISKRF----GSFQ-------ALDRVNLEIKNGSLVGLLGPSGSGKSTLLRVLAGL 51
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+P G I+ +G D T +M+ R +G VFQ+ +L P +T+ + + LEI ++
Sbjct: 52 EKPDSGRIWLEGQDAT-----QMKLQDREIGFVFQN--YALFPHLTVSENVAFGLEIQKI 104
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
++K ++ E+L+ + L E+ YP++LSGGQ QRV++ARA+ P ++LDEP +
Sbjct: 105 DSLLKKK--RVNELLKLMQL-EKFGDSYPNQLSGGQRQRVALARALAMEPKVLLLDEPFA 161
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
ALD ++ Q+ + L L K ++T +F++HD S ++ I ++ GK+++I S +
Sbjct: 162 ALDAKIRKQLRSWLRELHHKISVTTVFVTHDYSEAMELAQEIVLLENGKIIQIGSAQE 219
>dbj|BAB07815.1| (AB036417) CysA protein [Acetabularia acetabulum]
Length = 357
Score = 125 bits (312), Expect = 6e-28
Identities = 79/260 (30%), Positives = 141/260 (53%), Gaps = 23/260 (8%)
Query: 1 MKMKDFIVT-ENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTF 59
MK F V + + K++ R G+FK AV+G+ + I GE L G SG GK+T
Sbjct: 1 MKQPGFDVKLQGIVKHYKTRKGIFK-------AVNGVDLEINSGEIVALLGPSGSGKTTL 53
Query: 60 GRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKR 119
R++ L E TEG I++DG D T ++ R++G VFQ +L +T+ D +
Sbjct: 54 LRVMAGLEEITEGKIFYDGEDATDWSLED-----RQIGFVFQG--YALFKHLTVGDNIAF 106
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFV 179
+ ++ ++ +++++++ GL SR+P +LSGGQ QR+++ARA+ P +
Sbjct: 107 GPRMKKMDIDIRKRVKELLDLVQLPGLE----SRFPQQLSGGQRQRIALARALAYEPRLL 162
Query: 180 VLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
+LDEP ALD ++ + N L + NLT + ++HD ++DR+ + G + ++
Sbjct: 163 LLDEPFGALDPEIREDLRNSLKRIISSLNLTSVMVTHDQEEAFEVADRVVVFNKGSIEQV 222
Query: 240 LSIDDFRKGEIYHPYTAYLL 259
S++D + +P TA+++
Sbjct: 223 GSLEDIYR----NPQTAFVM 238
>pir||E83012 probable ATP-binding component of ABC transporter PA5074 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9951367|gb|AAG08459.1|AE004920_9 (AE004920) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 244
Score = 125 bits (310), Expect = 9e-28
Identities = 82/232 (35%), Positives = 129/232 (55%), Gaps = 13/232 (5%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I NL K F RG + V AVD +S + +GE + G SG GKSTF R L L
Sbjct: 2 IEVRNLLKVFDTRGQV-------VRAVDDVSTRVARGEVLVVIGPSGSGKSTFLRCLNGL 54
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
E EGS+ DG+D+ + ++ RR +G+VFQ +L P MT+ + L + R
Sbjct: 55 EEFDEGSVSIDGVDLAD-PRTDINAYRREVGMVFQH--FNLFPHMTVLENLCLAQRVVR- 110
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+ E+ K +L VG+G++ YP LSGGQ QRV+IARA+ +P ++ DEPTS
Sbjct: 111 KRGKAEREAKARALLAKVGIGQK-ADEYPSRLSGGQQQRVAIARALCMDPKVMLFDEPTS 169
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
ALD + ++L+++ L + +T + ++H++ + ++DR+ GK++E
Sbjct: 170 ALDPEMVGEVLDVMKTLAVE-GMTMVCVTHEMGFAREVADRVLFFDHGKLLE 220
>dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.]
Length = 663
Score = 124 bits (309), Expect = 1e-27
Identities = 86/258 (33%), Positives = 137/258 (52%), Gaps = 24/258 (9%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M F+ EN++K FP+ GG N Y+ A+ GI + I++GE L G SGCGKST L
Sbjct: 1 MSLFVAVENIEKSFPLSGG-----NEYL-ALKGIDLEIKQGEFISLIGHSGCGKSTLLNL 54
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L PT+G++ +G IT D M +VFQ+ SL P +T+ + + ++
Sbjct: 55 IAGLELPTDGAVSLEGQQITAPGPDRM--------VVFQN--YSLFPWLTVRENIALAVD 104
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+EE+ + E ++ VGLG + P +LSGG QRV+IAR + T P ++LD
Sbjct: 105 EVLRDLPKEERQAIVEEHIQLVGLGHA-ADKPPAQLSGGMKQRVAIARGLATRPKLLLLD 163
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVEI 239
EP ALD + + L+ + + ++T + ++HD+ +SDRI ++ G K+ I
Sbjct: 164 EPFGALDALTRGNLQEKLMQICEENHVTAVMVTHDVDEAVLLSDRIVMLTNGPGSKIGGI 223
Query: 240 LSID----DFRKGEIYHP 253
L +D R ++HP
Sbjct: 224 LEVDIPRPRKRMDVVHHP 241
>pir||D72257 hypothetical protein TM1403 - Thermotoga maritima (strain MSB8)
>gi|4981967|gb|AAD36474.1|AE001793_4 (AE001793)
antibiotic ABC transporter, ATP-binding protein,
putative [Thermotoga maritima]
Length = 327
Score = 124 bits (308), Expect = 2e-27
Identities = 80/237 (33%), Positives = 133/237 (55%), Gaps = 20/237 (8%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+D IV ENL K F G F+ AV G+S +++KGE F G +G GK+T +
Sbjct: 1 MEDIIVVENLVKKF----GDFE-------AVKGVSFSVKKGEIFAFLGPNGAGKTTTIHM 49
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
L L++PT G + G D+ K E R++RR++GIVFQD SL+ +T Y+ + +
Sbjct: 50 LTTLLKPTSGKAWVAGHDVLK----EPREVRRKIGIVFQD--QSLDRELTAYENMYIHGK 103
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
I+ + +K +I+E+LE V L E + SGG +R+ IAR++I P+ + LD
Sbjct: 104 IYGYGGEKLKK--RILELLEFVEL-LEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLD 160
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
EPT LD +A + + ++++ N+T +H + + ++DR+ I+ GK++ +
Sbjct: 161 EPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIAL 217
>pir||S77386 nitrate transport protein D-3 - Synechocystis sp. (strain PCC 6803)
>gi|1652568|dbj|BAA17489.1| (D90906) nitrate transport
protein NrtD [Synechocystis sp.]
Length = 332
Score = 123 bits (306), Expect = 3e-27
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 21/240 (8%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
F+ EN+ K +P G + +DG+++ +++GE + G SGCGKST ++
Sbjct: 18 FLAIENVSKVYPTAQGPYT-------VLDGVNLEVKEGEFICIIGHSGCGKSTLLNMVSG 70
Query: 66 LIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
+PT+G++ IT D M +VFQ+ L P + YD + +E
Sbjct: 71 FNQPTQGTVKLKNQLITAPGPDRM--------MVFQN--YCLLPWKSAYDNVSLAVESVY 120
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+S+ EK + + LE VGL E + P ++SGG QRV+IARA+ +P+ ++LDEP
Sbjct: 121 PDKSKTEKEELVAHYLEMVGLTEA-AQKKPGQISGGMKQRVAIARALAISPEVLILDEPF 179
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVEILSI 242
ALD + ++ L+ + R+ NLT L I+HDI +++DR+ +M G K+ EIL I
Sbjct: 180 GALDAITKEELQEELLKIWRENNLTVLMITHDIDEALFLADRLVMMTNGPSAKIGEILDI 239
>sp|P45769|YHDZ_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YHDZ
>gi|7442515|pir||A65120 ABC-type transport protein yhdZ
- Escherichia coli >gi|606212|gb|AAA58075.1| (U18997)
ORF_o252 [Escherichia coli] >gi|1789672|gb|AAC76303.1|
(AE000406) putative ATP-binding component of a transport
system [Escherichia coli K12]
Length = 252
Score = 121 bits (301), Expect = 1e-26
Identities = 78/240 (32%), Positives = 135/240 (55%), Gaps = 19/240 (7%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I EN+ K++ G F H + I++ ++ GE L G SG GKST R + L
Sbjct: 13 ITLENVNKWY----GQF-------HVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHL 61
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLK-RPLEIHR 125
E +G I DGI++ + D + ++R+ +G+VFQ +L P +T+ P+ + +
Sbjct: 62 EEHQQGRIVVDGIELNE-DIRNIERVRQEVGMVFQH--FNLFPHLTVLQNCTLAPIWVRK 118
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+ + E E D V LE V + E H ++P ++SGGQ QRV+IAR++ P ++ DEPT
Sbjct: 119 MPKKEAE--DLAVHYLERVRIAE-HAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPT 175
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
SALD + ++L+ ++ L + +T L ++H++ + ++DR+ M G++VE + D+F
Sbjct: 176 SALDPEMVKEVLDTMIGLAQS-GMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEF 234
>sp|Q57855|Y412_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0412
>gi|2129162|pir||D64351 nitrate transport ATP-binding
protein - Methanococcus jannaschii
>gi|1591118|gb|AAB98401.1| (U67493) nitrate transporter
protein (nrtC) homolog (cmpC) [Methanococcus jannaschii]
Length = 267
Score = 121 bits (301), Expect = 1e-26
Identities = 79/244 (32%), Positives = 130/244 (52%), Gaps = 22/244 (9%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
+MK + ENL K F G K A+D I++ + + E + G SGCGK+T R
Sbjct: 12 RMKVKLKVENLTKIFEFNGNRVK-------ALDNINLEVYENEFLTVMGPSGCGKTTLLR 64
Query: 62 LLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPL 121
++ L PTEG + DG ++ D G+VFQ + +L P T+ + L
Sbjct: 65 IIAGLDYPTEGKVLLDGKEVKGPGADR--------GVVFQ--QYTLMPWRTVLKNVTFGL 114
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
E+ + ++E + K + ++ VGL E YP++LSGG QRV+IAR + +P+ V++
Sbjct: 115 ELKGIPKNERIEIAK--KFIKMVGL-EGFEDAYPYQLSGGMQQRVAIARTLANDPEIVLM 171
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL--GKVVEI 239
DEP +ALD + + N L+ + +K T F++H + Y+SDR+ ++ G++ EI
Sbjct: 172 DEPFAALDAQTRNILQNELLKIWQKEKKTVFFVTHSVDEAVYLSDRVVVLTARPGRIKEI 231
Query: 240 LSID 243
+ ID
Sbjct: 232 VKID 235
>sp|P44531|AFUC_HAEIN PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC
>gi|1074273|pir||D64143 probable ABC-type transport
protein HI0126 - Haemophilus influenzae (strain Rd KW20)
>gi|1573081|gb|AAC21800.1| (U32698) ferric ABC
transporter, ATP-binding protein (afuC) [Haemophilus
influenzae Rd]
Length = 328
Score = 120 bits (298), Expect = 2e-26
Identities = 77/238 (32%), Positives = 127/238 (53%), Gaps = 21/238 (8%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M DF+V +N+ K F +D + + I++G L G SGCGK+T
Sbjct: 1 MSNNDFLVLKNITKAFGK-----------AVVIDNLDLTIKRGTMVTLLGPSGCGKTTVL 49
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
RL+ L PT G I+ DG D+TK R + IVFQ +L P M+I D +
Sbjct: 50 RLVAGLENPTSGQIFIDGEDVTKSSIQN-----RDICIVFQS--YALFPHMSIGDNVGYG 102
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
L++ + + EE+ ++ E LE V L R+ ++SGGQ QRV++ARA++ P ++
Sbjct: 103 LKMQGIGK--EERAQRVKEALELVDLAGFE-DRFVDQISGGQQQRVALARALVLKPKVLL 159
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
DEP S LD +++ + + LQ++ +T L+++HD + +SD + +M GK+++
Sbjct: 160 FDEPLSNLDANLRRSMREKIRELQQRLGITSLYVTHDQTEAFAVSDEVIVMNKGKIMQ 217
>pir||T34595 ABC-transporter ATP-binding protein - Streptomyces coelicolor
>gi|2815336|emb|CAA16460.1| (AL021529) SC10A5.28c,
ABC-transporter ATP-binding protein, len : 361 aa;
similar to many eg. Streptomyces reticuli TR:P964 83
(EMBL:Y08921) MSIK PROTEIN involved in in cellobiose and
maltose transport(377 aa), opt: 809 z-score: 1069.1 E():
0 , 40.4% i>
Length = 361
Score = 120 bits (297), Expect = 3e-26
Identities = 81/240 (33%), Positives = 128/240 (52%), Gaps = 29/240 (12%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
+V EN+KK F L + ++ + GE F L G SGCGKST + L
Sbjct: 4 LVVENIKKSFHGTAVL-----------EDVNFTVADGEFFTLLGPSGCGKSTTLSCVAGL 52
Query: 67 IEPTEGSI------YFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
P G+I +FDG + + + R +G+VFQ +L P MT+ D L P
Sbjct: 53 ETPDSGTIRVGDQVFFDGTRRSTVPPEG-----RNLGLVFQS--YALWPHMTVADNLALP 105
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHL-SRYPHELSGGQLQRVSIARAIITNPDFV 179
L++ ++ + E+ + I ++L V + HL RYPH+LSGGQ QRV++AR I+ +P +
Sbjct: 106 LKLRKVTKGEQRRL--IDDVLTKVDMA--HLRDRYPHQLSGGQQQRVALARGIVYSPGVL 161
Query: 180 VLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
+LDEP S LD ++ Q L +LQR+ +T ++++HD +SDRI + G + ++
Sbjct: 162 LLDEPLSNLDAKMRDQARVWLKDLQREVGITTVYVTHDQVEAMSLSDRIAVFMHGHLQQV 221
>pir||C71081 probable resistance ATP-binding protein - Pyrococcus horikoshii
>gi|3257326|dbj|BAA30009.1| (AP000004) 324aa long
hypothetical resistance ATP-binding protein [Pyrococcus
horikoshii]
Length = 324
Score = 120 bits (297), Expect = 3e-26
Identities = 81/247 (32%), Positives = 133/247 (53%), Gaps = 20/247 (8%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M + I+ ENL K + G F+ AV GIS +R+GE F G +G GK+T
Sbjct: 1 MNKVEAIIVENLVKKY----GDFE-------AVRGISFKVRRGEIFAFLGPNGAGKTTTV 49
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
+L L++PT G G D+ K E R++R+++G+VFQDP S++ +T ++ +
Sbjct: 50 HMLTTLLKPTSGRAIVAGHDVVK----ESREVRKKIGVVFQDP--SVDRELTAWENMYIH 103
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
I+ L E +K KI E+L+ V L E R SGG +R+ IARA+I P+ +
Sbjct: 104 GRIYGLKGQELKK--KIEELLKFVELWE-FKDRQVKYFSGGMQRRLEIARALIHEPEVLF 160
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEIL 240
LDEPT LD +A I + ++ + ++T +H + + ++DRI I+ GK++
Sbjct: 161 LDEPTIGLDPQTRAHIWEYIKTMKEEHDMTIFLTTHYMDEAEQLADRIAIIDHGKIIAEG 220
Query: 241 SIDDFRK 247
+ ++ +K
Sbjct: 221 TAEELKK 227
>pir||B75082 phosphate abc transporter, ATP-binding protein (pstb) PAB0700 -
Pyrococcus abyssi (strain Orsay)
>gi|5458471|emb|CAB49959.1| (AJ248286) phosphate ABC
transporter, ATP-binding protein (pstB) [Pyrococcus
abyssi]
Length = 280
Score = 120 bits (297), Expect = 3e-26
Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 28/247 (11%)
Query: 3 MKDFIV-TENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
MK+F + T NL+ Y+ + GI++ I K F L G SGCGKST R
Sbjct: 28 MKEFAIETRNLRIYYGSN-----------EVIKGINLKIPKNVVFALMGPSGCGKSTLLR 76
Query: 62 LLLRLIE-----PTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDT 116
RL++ EG + G++I D D +R +RR +G+VFQ P P +TIY+
Sbjct: 77 AFNRLLDLNPEAKVEGEVRISGVNIYSPDVDPIR-VRREVGMVFQYPNPF--PHLTIYEN 133
Query: 117 LKRPLEIHRLAESEEEKYDKIVE-ILEAVGLGEE---HLSRYPHELSGGQLQRVSIARAI 172
+ ++++ LA+ +E D+IV+ L+ L +E L YP LSGGQ QR+ IAR +
Sbjct: 134 VAIGVKLNGLAKGKE--LDEIVKWALKKATLWDEVKNRLKDYPANLSGGQKQRLVIARVL 191
Query: 173 ITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMY 232
P +++DEPT+ +D +I LL L++ + T + ++H + +SD + +Y
Sbjct: 192 AMKPKIILMDEPTANIDPVGTRKIEELLFELKKDY--TIVLVTHSPAQAARVSDYVAFIY 249
Query: 233 LGKVVEI 239
+GK+VE+
Sbjct: 250 MGKIVEV 256
>pir||B81147 sulfate ABC transporter, ATP-binding protein NMB0879 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226117|gb|AAF41290.1| (AE002440) sulfate ABC
transporter, ATP-binding protein [Neisseria meningitidis
MC58]
Length = 357
Score = 119 bits (296), Expect = 4e-26
Identities = 84/247 (34%), Positives = 133/247 (53%), Gaps = 24/247 (9%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +NL K+F G F HA+ I++N+ G+ L G SGCGK+T R++ L
Sbjct: 3 ITIQNLNKHF----GNF-------HALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGL 51
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
G+I FDG D+T E R++G VFQ +L M ++D + L +
Sbjct: 52 ENADGGNILFDGQDVTAKHVRE-----RKVGFVFQH--YALFRHMNVFDNVAFGLTVLPK 104
Query: 127 AE--SEEEKYDKIVEILEAVGLGEEHLSR-YPHELSGGQLQRVSIARAIITNPDFVVLDE 183
+E S+ + K+ E+L+ V L HL++ YPH+LSGGQ QR+++ARA+ P ++LDE
Sbjct: 105 SERPSKGQIRAKVEELLKLVQLS--HLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDE 162
Query: 184 PTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSID 243
P ALD V+ ++ L ++ +T + ++HD +SD I +M GK+ + S +
Sbjct: 163 PFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAE 222
Query: 244 D-FRKGE 249
+RK E
Sbjct: 223 AIYRKPE 229
>sp|Q57293|AFUC_ACTPL FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC
>gi|1469284|gb|AAB05030.1| (U05042) afuC gene product
[Actinobacillus pleuropneumoniae]
>gi|1477453|gb|AAB17216.1| (U04954) afuC [Actinobacillus
pleuropneumoniae]
Length = 348
Score = 119 bits (295), Expect = 5e-26
Identities = 77/234 (32%), Positives = 125/234 (52%), Gaps = 21/234 (8%)
Query: 5 DFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLL 64
DF+V +N+ K F +D + + I++G L G SGCGK+T RL+
Sbjct: 4 DFLVLKNITKSFGK-----------ATVIDNLDLVIKRGTMVTLLGPSGCGKTTVLRLVA 52
Query: 65 RLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
L PT G I+ DG D+TK R + IVFQ +L P M+I D + L +
Sbjct: 53 GLENPTSGQIFIDGEDVTKSSIQN-----RDICIVFQS--YALFPHMSIGDNVGYGLRMQ 105
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+ S EE+ ++ E LE V L R+ ++SGGQ QRV++ARA++ P ++LDEP
Sbjct: 106 GV--SNEERKQRVKEALELVDLAG-FADRFVDQISGGQQQRVALARALVLKPKVLILDEP 162
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
S LD +++ + + LQ++ +T L+++HD + +SD + +M G +++
Sbjct: 163 LSNLDANLRRSMREKIRELQQRLGITSLYVTHDQTEAFAVSDEVIVMNKGTIMQ 216
>pir||C71197 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3258287|dbj|BAA30970.1| (AP000007) 318aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 318
Score = 119 bits (295), Expect = 5e-26
Identities = 75/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I NL+K +P + L +K + A+ GI+ ++KGE FGL G +G GK+T ++L L
Sbjct: 4 IEVRNLRKLYPKKIPLPFRKVEWFEALKGITFRVKKGELFGLLGPNGAGKTTTIKILTTL 63
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+EP+ G G+D+ K + R++R+R+ +V + + +L R+T Y+ L+ I+ +
Sbjct: 64 LEPSSGEAKVLGLDVVK----DAREIRKRINLVAEGER-TLYWRLTAYENLRYFASIYYI 118
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
E EK +I E+L+ VGL + + S G QR++IA+A+I +P+ + LDEPT
Sbjct: 119 PRREAEK--RIEELLKMVGLWDRR-NDLVMNYSRGMKQRLAIAKALINDPEVLFLDEPTL 175
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
LD+ + L+ L + T L +H ++ + + DRI I+ GK++ +
Sbjct: 176 GLDVQSAVFVRELVRRLVDEEGKTVLLTTHYMNEAEELCDRIAIIDHGKIIAL 228
>pir||F81875 sulfate ABC transporter, ATP-binding protein NMA1097 [similarity] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379792|emb|CAB84360.1| (AL162755) putative sulphate
permease ATP-binding protein [Neisseria meningitidis
Z2491]
Length = 357
Score = 119 bits (295), Expect = 5e-26
Identities = 84/247 (34%), Positives = 132/247 (53%), Gaps = 24/247 (9%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +NL K+F G F HA+ I++N+ G+ L G SGCGK+T R++ L
Sbjct: 3 ITIQNLNKHF----GNF-------HALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGL 51
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
G I FDG D+T E R++G VFQ +L M ++D + L +
Sbjct: 52 ENADGGKILFDGQDVTAKHVRE-----RKVGFVFQH--YALFRHMNVFDNVAFGLTVLPK 104
Query: 127 AE--SEEEKYDKIVEILEAVGLGEEHLSR-YPHELSGGQLQRVSIARAIITNPDFVVLDE 183
+E S+ + K+ E+L+ V L HL++ YPH+LSGGQ QR+++ARA+ P ++LDE
Sbjct: 105 SERPSKGQIRAKVEELLKLVQLS--HLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDE 162
Query: 184 PTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSID 243
P ALD V+ ++ L ++ +T + ++HD +SD I +M GK+ + S +
Sbjct: 163 PFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAE 222
Query: 244 D-FRKGE 249
+RK E
Sbjct: 223 AIYRKPE 229
>gb|AAA72361.1| (L11748) methyl coenzyme M reductase system component A2
[Methanobacterium thermoautotrophicum]
Length = 540
Score = 118 bits (294), Expect = 7e-26
Identities = 70/245 (28%), Positives = 130/245 (52%), Gaps = 13/245 (5%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K K+F + K V+ + V AVDG+ + + +GE FG+ G SG GK+T R
Sbjct: 279 KAKEFEQENPIIKMVDVKKHYYSIDRGVVKAVDGVDLTVYEGEIFGVVGLSGAGKTTLSR 338
Query: 62 LLLRLIEPTEGSIYF----DGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTL 117
+++ + EP+ G + + ID+T+ ++ +GI+ Q+ SL P + L
Sbjct: 339 IIIGITEPSSGKVCVRLGDEWIDMTEKGPLGRGRVTPYLGILHQE--YSLYPHRDVLGNL 396
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH----LSRYPHELSGGQLQRVSIARAII 173
+ + +E + V +L+ VG +++ L++YP ELSGG+ RV++A+ +I
Sbjct: 397 TEAISLEL---PDEFAKMRAVYVLKTVGFDDKYAESILNKYPDELSGGERHRVALAQVLI 453
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P ++LDEPT +D + Q+ + ++ + + N T+L ISHD+ + + DR +M
Sbjct: 454 KEPRIIILDEPTGTMDPITRVQVTDSILKAREELNQTFLIISHDMDFVLDVCDRASLMRG 513
Query: 234 GKVVE 238
G++++
Sbjct: 514 GRILK 518
Score = 69.1 bits (166), Expect = 7e-11
Identities = 71/264 (26%), Positives = 110/264 (40%), Gaps = 48/264 (18%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
FI EN+ K F +G V + IS+ I +G+ G+ G SG GKS +L
Sbjct: 13 FIKLENVTKKF--KG---------VEVLRDISVEIDEGKVLGILGRSGAGKSVLINMLRG 61
Query: 66 LIE--PTEGSIY----------------FDG-------------IDITKLDKDEMRKLRR 94
+ E P G + FDG +D DK +RR
Sbjct: 62 MKEYRPDSGRVIYNVAICPECLRVEPPSFDGRNCSCGSSFALEEVDFWNCDKKIFAAVRR 121
Query: 95 RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRY 154
R+ I+ Q + I + +K E+ E E Y + +E+LE +G ++
Sbjct: 122 RIAIMLQRTFALYEDDTVIDNVIKSMPEL----EYEAALY-RALELLEMSQMGHR-ITHI 175
Query: 155 PHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFI 214
+LSGG+ QRV +AR + P + DEPT LD I + L+ + +T +
Sbjct: 176 ARDLSGGEKQRVVLARQLAKEPMLFLADEPTGTLDPQTAELIHDALLEGVKDKGITMIIT 235
Query: 215 SHDISVLQYMSDRIGIMYLGKVVE 238
SH V+ +SD + G++VE
Sbjct: 236 SHWPEVMSDLSDYAIWIEKGEIVE 259
>pir||B36921 methyl coenzyme M reductase (EC 1.8.-.-) component A2 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|385924|gb|AAB26631.1| (S61233) methylcoenzyme M
reductase system component A2 [Methanobacterium
thermoautotrophicum, delta H, Peptide, 530 aa]
Length = 530
Score = 118 bits (294), Expect = 7e-26
Identities = 70/245 (28%), Positives = 130/245 (52%), Gaps = 13/245 (5%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K K+F + K V+ + V AVDG+ + + +GE FG+ G SG GK+T R
Sbjct: 269 KAKEFEQENPIIKMVDVKKHYYSIDRGVVKAVDGVDLTVYEGEIFGVVGLSGAGKTTLSR 328
Query: 62 LLLRLIEPTEGSIYF----DGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTL 117
+++ + EP+ G + + ID+T+ ++ +GI+ Q+ SL P + L
Sbjct: 329 IIIGITEPSSGKVCVRLGDEWIDMTEKGPLGRGRVTPYLGILHQE--YSLYPHRDVLGNL 386
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH----LSRYPHELSGGQLQRVSIARAII 173
+ + +E + V +L+ VG +++ L++YP ELSGG+ RV++A+ +I
Sbjct: 387 TEAISLEL---PDEFAKMRAVYVLKTVGFDDKYAESILNKYPDELSGGERHRVALAQVLI 443
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P ++LDEPT +D + Q+ + ++ + + N T+L ISHD+ + + DR +M
Sbjct: 444 KEPRIIILDEPTGTMDPITRVQVTDSILKAREELNQTFLIISHDMDFVLDVCDRASLMRG 503
Query: 234 GKVVE 238
G++++
Sbjct: 504 GRILK 508
Score = 69.1 bits (166), Expect = 7e-11
Identities = 71/264 (26%), Positives = 110/264 (40%), Gaps = 48/264 (18%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
FI EN+ K F +G V + IS+ I +G+ G+ G SG GKS +L
Sbjct: 3 FIKLENVTKKF--KG---------VEVLRDISVEIDEGKVLGILGRSGAGKSVLINMLRG 51
Query: 66 LIE--PTEGSIY----------------FDG-------------IDITKLDKDEMRKLRR 94
+ E P G + FDG +D DK +RR
Sbjct: 52 MKEYRPDSGRVIYNVAICPECLRVEPPSFDGRNCSCGSSFALEEVDFWNCDKKIFAAVRR 111
Query: 95 RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRY 154
R+ I+ Q + I + +K E+ E E Y + +E+LE +G ++
Sbjct: 112 RIAIMLQRTFALYEDDTVIDNVIKSMPEL----EYEAALY-RALELLEMSQMGHR-ITHI 165
Query: 155 PHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFI 214
+LSGG+ QRV +AR + P + DEPT LD I + L+ + +T +
Sbjct: 166 ARDLSGGEKQRVVLARQLAKEPMLFLADEPTGTLDPQTAELIHDALLEGVKDKGITMIIT 225
Query: 215 SHDISVLQYMSDRIGIMYLGKVVE 238
SH V+ +SD + G++VE
Sbjct: 226 SHWPEVMSDLSDYAIWIEKGEIVE 249
>gb|AAB85511.1| (AE000874) methyl coenzyme M reductase system, component A2
[Methanobacterium thermoautotrophicum]
Length = 540
Score = 118 bits (294), Expect = 7e-26
Identities = 70/245 (28%), Positives = 130/245 (52%), Gaps = 13/245 (5%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K K+F + K V+ + V AVDG+ + + +GE FG+ G SG GK+T R
Sbjct: 279 KAKEFEQENPIIKMVDVKKHYYSIDRGVVKAVDGVDLTVYEGEIFGVVGLSGAGKTTLSR 338
Query: 62 LLLRLIEPTEGSIYF----DGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTL 117
+++ + EP+ G + + ID+T+ ++ +GI+ Q+ SL P + L
Sbjct: 339 IIIGITEPSSGKVCVRLGDEWIDMTEKGPLGRGRVTPYLGILHQE--YSLYPHRDVLGNL 396
Query: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEH----LSRYPHELSGGQLQRVSIARAII 173
+ + +E + V +L+ VG +++ L++YP ELSGG+ RV++A+ +I
Sbjct: 397 TEAISLEL---PDEFAKMRAVYVLKTVGFDDKYAESILNKYPDELSGGERHRVALAQVLI 453
Query: 174 TNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYL 233
P ++LDEPT +D + Q+ + ++ + + N T+L ISHD+ + + DR +M
Sbjct: 454 KEPRIIILDEPTGTMDPITRVQVTDSILKAREELNQTFLIISHDMDFVLDVCDRASLMRG 513
Query: 234 GKVVE 238
G++++
Sbjct: 514 GRILK 518
Score = 69.9 bits (168), Expect = 4e-11
Identities = 71/264 (26%), Positives = 110/264 (40%), Gaps = 48/264 (18%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
FI EN+ K F +G V + IS+ I +G+ G+ G SG GKS +L
Sbjct: 13 FIKLENVTKKF--KG---------VEVLRDISVEIDEGKVLGILGRSGAGKSVLINMLRG 61
Query: 66 LIE--PTEGSIY----------------FDG-------------IDITKLDKDEMRKLRR 94
+ E P G + FDG +D DK +RR
Sbjct: 62 MKEYRPDSGRVIYNVAICPECLRVEPPSFDGRNCSCGSSFALEEVDFWNCDKKIFAAVRR 121
Query: 95 RMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRY 154
R+ I+ Q + I + +K E+ E E Y + +E+LE +G ++
Sbjct: 122 RIAIMLQRTFALYEDDTVIDNVIKSMPEL----EYEAALY-RALELLEMTQMGHR-ITHI 175
Query: 155 PHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFI 214
+LSGG+ QRV +AR + P + DEPT LD I + L+ + +T +
Sbjct: 176 ARDLSGGEKQRVVLARQLAKEPMLFLADEPTGTLDPQTAELIHDALLEGVKDKGITMIIT 235
Query: 215 SHDISVLQYMSDRIGIMYLGKVVE 238
SH V+ +SD + G++VE
Sbjct: 236 SHWPEVMSDLSDYAIWIEKGEIVE 259
>pir||C75369 amino acid ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459415|gb|AAF11206.1|AE002008_1 (AE002008) amino
acid ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 265
Score = 118 bits (294), Expect = 7e-26
Identities = 78/233 (33%), Positives = 133/233 (56%), Gaps = 20/233 (8%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
IV +N++K+F G F HA+ G+++ +R+GE + G SG GKSTF R + L
Sbjct: 26 IVAQNVQKHF----GTF-------HALRGVNLTVRQGEVVVIIGPSGSGKSTFIRTINAL 74
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLK-RPLEIHR 125
GSI DG+ + + +RR +G+VFQ +L P +T+ D + P +
Sbjct: 75 DPHDGGSITVDGLPLQ--GARNLDAIRREVGMVFQS--FNLFPHLTVLDNITLAPTRVRG 130
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+ +++ + + +++L VG+ EE ++P +LSGGQ QRV+IARA+ P ++ DEPT
Sbjct: 131 VDKAQAQA--RGLDLLRRVGI-EEQAYKFPAQLSGGQQQRVAIARALAMEPKIMLFDEPT 187
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
SALD + ++L+++ L R +T L ++H++ + ++DRI G +VE
Sbjct: 188 SALDPEMIKEVLDVMKELART-GMTMLVVTHEMGFAREVADRILFFDQGNIVE 239
>gb|AAF99694.1|AF267498_4 (AF267498) ABC transporter OrfX [Streptococcus mutans]
Length = 246
Score = 118 bits (292), Expect = 1e-25
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 13/219 (5%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
+I +LKK + + GL + A+ I+ ++++GE + GESG GKST +L
Sbjct: 3 YIGVSHLKKVYKTQEGLTNE------ALKDITFSVQEGEFIAIMGESGSGKSTLLNILAC 56
Query: 66 LIEPTEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
+ P+ G I F+ + K+ +E R R +G +FQ+ +L D L P+ I
Sbjct: 57 MDYPSSGHIIFNNYQLEKVKDEEAAVFRSRHIGFIFQN--FNLLNIFNNKDNLLIPVII- 113
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
+ S+ Y+K + L AV E LS+YP+ELSGGQ QR++IARA+I NPD ++ DEP
Sbjct: 114 --SGSKVNSYEKRLRDLAAVVGIESLLSKYPYELSGGQQQRLAIARALIMNPDLILADEP 171
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQY 223
T LD +ILNLL N+ K T L ++H Y
Sbjct: 172 TGQLDSKTSQRILNLLSNINAK-RKTILMVTHSPKAASY 209
>sp|P38045|NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC >gi|419629|pir||S30893
nrtC protein - Synechococcus sp. (strain PCC 7942)
>gi|48971|emb|CAA43811.1| (X61625) nitrate transporter
[Synechococcus sp.] >gi|445047|prf||1908370B nitrate
transporter [Synechococcus sp.]
Length = 659
Score = 117 bits (291), Expect = 2e-25
Identities = 76/244 (31%), Positives = 127/244 (51%), Gaps = 20/244 (8%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M F+ +++ + F + GG Y+ A+ +S+NIR GE L G SGCGKST L
Sbjct: 1 MSVFLAVDHVHQVFDLPGG-----GQYI-ALKDVSLNIRPGEFISLIGHSGCGKSTLLNL 54
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L +P+ G I +G +T+ D M +VFQ+ SL P T+ + ++
Sbjct: 55 IAGLAQPSSGGIILEGRQVTEPGPDRM--------VVFQN--YSLLPWRTVRQNIALAVD 104
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ E+ I E ++ VGL +YPHE+SGG QRV+IAR + P ++LD
Sbjct: 105 SVLHDRNRTERRTIIEETIDLVGL-RAAADKYPHEISGGMKQRVAIARGLAIRPKLLLLD 163
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVEI 239
EP ALD + + L+ + ++ +T + ++HD+ +SDR+ ++ G ++ +I
Sbjct: 164 EPFGALDALTRGNLQEQLMRICQEAGVTAVMVTHDVDEALLLSDRVVMLTNGPAAQIGQI 223
Query: 240 LSID 243
L +D
Sbjct: 224 LEVD 227
>dbj|BAB06849.1| (AP001517) sulfate ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 357
Score = 117 bits (291), Expect = 2e-25
Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 21/240 (8%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
IV +N+ K F G F+ A+ I+++I GE L G SG GK++ R++ L
Sbjct: 3 IVIQNVSKSF----GSFQ-------ALADINLSIETGELVALLGPSGSGKTSLLRIIAGL 51
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+G IYF +T + R++G VFQ +L P MT+ D + L +
Sbjct: 52 EAADQGDIYFHKDKVT-----QTHAASRQVGFVFQH--YALFPHMTVADNISYGLRVKPR 104
Query: 127 AE--SEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEP 184
E S++E +K+ E+L V L E RYP +LSGGQ QR+++ARA+ P ++LDEP
Sbjct: 105 KERPSKKEIAEKVRELLALVKL-EGMDDRYPAQLSGGQRQRIALARALAVEPKVLLLDEP 163
Query: 185 TSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDD 244
ALD V+ + L L +F +T +F++HD +SDR+ +M GK+ ++ S D+
Sbjct: 164 FGALDAKVRKDLRKWLRKLHNEFQVTSVFVTHDQEEALDVSDRVVVMNQGKIEQVGSPDE 223
>pir||H75157 daunorubicin resistance ATP-binding protein (drra-2) PAB2068 -
Pyrococcus abyssi (strain Orsay)
>gi|5457853|emb|CAB49343.1| (AJ248284) daunorubicin
resistance ATP-binding protein (drrA-2) [Pyrococcus
abyssi]
Length = 318
Score = 117 bits (290), Expect = 2e-25
Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I +NL+K +P + L +K + A+ GI+ N++KGE FGL G +G GK+T ++L L
Sbjct: 4 IEVKNLRKLYPKKIPLPFRKIEWFEALKGITFNVKKGELFGLLGPNGAGKTTTIKILTTL 63
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
+EPT G G DI K E R++R+R+ +V + + +L R+T Y+ L+ I+ +
Sbjct: 64 LEPTSGEARVLGFDIVK----EAREIRKRINLVAEGER-TLYWRLTAYENLRYFASIYYV 118
Query: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
+ E ++I +L VGL + S G QR++IA+A+I +P+ + LDEPT
Sbjct: 119 PKKVAE--ERIRNLLHMVGLWDRK-DDLVMNYSRGMKQRLAIAKALINDPEVLFLDEPTL 175
Query: 187 ALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFR 246
LD+ + L+ L + T L +H + + + DRI I+ G+++ + + + +
Sbjct: 176 GLDVQSAIFVRELIKKLVEEEKKTVLLTTHYMHEAEELCDRIAIIDHGRIIALDTPEGLK 235
Query: 247 K 247
K
Sbjct: 236 K 236
>sp|P39459|NASD_KLEPN NITRATE TRANSPORT PROTEIN NASD >gi|2642137|gb|AAB86901.1| (L27431)
nitrate transporter ATPase component; NasD [Klebsiella
oxytoca]
Length = 262
Score = 116 bits (287), Expect = 5e-25
Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
MK I + + + F G F A+ +S +I +GET L G SGCGKST L
Sbjct: 1 MKPLIQVQGVSQRFSTASGEFL-------ALQNVSFDIYEGETISLIGHSGCGKSTLLNL 53
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ + PTEG + D +I + +VFQ+ SL P +T +D + ++
Sbjct: 54 IAGIALPTEGGLLCDNREIAGPGPER--------AVVFQN--HSLLPWLTCFDNVALAVD 103
Query: 123 -IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
+ R + S+ E+ + I LE V +G L + P E+SGG QRV IARA+ P ++L
Sbjct: 104 QVFRRSMSKGERKEWIEHNLERVQMGHA-LHKRPGEISGGMKQRVGIARALAMKPKVLLL 162
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVE 238
DEP ALD +A + + ++ +Q+ N T + I+HD+ +SDR+ +M G V E
Sbjct: 163 DEPFGALDALTRAHLQDAVMQIQQSLNTTIVMITHDVDEAVLLSDRVLMMTNGPAATVGE 222
Query: 239 ILSID 243
IL ++
Sbjct: 223 ILDVN 227
>pir||F71849 amino acid ABC transporter, ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4155696|gb|AAD06680.1|
(AE001537) AMINO ACID ABC TRANSPORTER, ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 116 bits (287), Expect = 5e-25
Identities = 78/244 (31%), Positives = 134/244 (53%), Gaps = 19/244 (7%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + T+ LKK + Q +L +DGI+ + KGE + G SGCGKSTF +
Sbjct: 1 MSAILETKGLKKTY--------QNHL---VLDGINFTLNKGEVAVILGPSGCGKSTFLKC 49
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDT-LKRPL 121
L L + EG I F+ ++ ++R+++G+VFQ+ + L P + + D L PL
Sbjct: 50 LNGLEKIDEGEILFENTNLNT-PSTNWNQMRQKIGMVFQNYE--LFPHLNVLDNILLAPL 106
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
++ + S++E + VE+L+ VGL E YP ELSGGQ QRV+I R++ P ++
Sbjct: 107 KVQK--RSKDEVLSQAVELLKRVGL-EHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLF 163
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DE T++LD + ++L +++ L K ++ + ++H++ Q ++ +I GK+ E S
Sbjct: 164 DEVTASLDPEMVKEVLEVILEL-AKTGMSMVIVTHEMKFAQKIASKIVFFDSGKIAEENS 222
Query: 242 IDDF 245
+F
Sbjct: 223 AKEF 226
>emb|CAC11998.1| (AL445065) ABC transporter related protein [Thermoplasma
acidophilum]
Length = 334
Score = 115 bits (286), Expect = 6e-25
Identities = 70/232 (30%), Positives = 133/232 (57%), Gaps = 21/232 (9%)
Query: 7 IVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRL 66
I TENL K +P GG + AVDG++I I + E +GL G++G GK+T ++L
Sbjct: 9 IKTENLTKIYP--GG--------IKAVDGLNIEIEEAEIYGLLGKNGAGKTTTIKMLTTA 58
Query: 67 IEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
I+PT G+ G D+ K DK+ K+RR +G+V QD + + + + L+ + +
Sbjct: 59 IDPTSGNAIIGGYDLRK-DKE---KIRRIIGVVPQDLTTDADLKGV--ENLRMIASFYNI 112
Query: 127 AESE-EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
+ E E++ ++EI++ G +++S+Y SGG +R+ + ++ +P + LDEPT
Sbjct: 113 PKQEAEQRIKDLLEIVDLSDWGNKYVSQY----SGGMRKRLELICGLVNSPKILFLDEPT 168
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
LD++ ++++ + ++Q++ +T + SH + + ++DRI I+ GK++
Sbjct: 169 LGLDVNTRSKMWKYIRDIQKELGVTIILTSHYLEEVDQLADRISIIDHGKIL 220
>pir||H72301 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981596|gb|AAD36131.1|AE001765_10 (AE001765)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 236
Score = 115 bits (285), Expect = 8e-25
Identities = 72/234 (30%), Positives = 125/234 (52%), Gaps = 21/234 (8%)
Query: 5 DFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLL 64
D + ENLKK F R + V+G+++ +GE GL G +G GK+T ++L
Sbjct: 2 DVLRCENLKKRFGRR-----------YVVNGVNLEFHRGEIVGLLGPNGAGKTTIFNMIL 50
Query: 65 RLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
++ PT G I F +DITK R R+GI + ++S+ +T+ + + L H
Sbjct: 51 GVVVPTSGKIIFRDVDITKFPVYR----RARLGITYLQQETSIFGGLTVRENIDLVLRFH 106
Query: 125 RLAESEEEKYDKIVEILEAVGLGEEHLSRYPHE-LSGGQLQRVSIARAIITNPDFVVLDE 183
+ +E++ KI E+L L +HL P LSGG+ +++ +AR + NP F++LDE
Sbjct: 107 E--KDKEKRERKIEELLHEFHL--KHLENQPASFLSGGEKRKLELARMMCLNPAFILLDE 162
Query: 184 PTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
P S +D +I + + L++K N + H++ L ++DRI ++Y G+++
Sbjct: 163 PFSGIDPKTVKEIQKMTLELKQK-NFGIVITDHNVDELVEIADRIYVIYKGEIL 215
>pir||F64751 probable ABC-type transport protein b0262 - Escherichia coli
>gi|1552831|gb|AAB08683.1| (U70214) hypothetical
[Escherichia coli] >gi|1786457|gb|AAC73365.1| (AE000134)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 352
Score = 114 bits (283), Expect = 1e-24
Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 23/245 (9%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M K+F+ N+ K F +D I++ I +G+ L G SGCGK+T
Sbjct: 5 MTQKNFVELRNVTKRFGSNT-----------VIDNINLTIPQGQMVTLLGPSGCGKTTIL 53
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKR 119
RL+ L +P+EG I+ DG D+T R +++R + +VFQ +L P M++ + +
Sbjct: 54 RLVAGLEKPSEGQIFIDGEDVTH------RSIQQRDICMVFQS--YALFPHMSLGENVGY 105
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFV 179
L++ L E ++ E L V L E R+ ++SGGQ QRV++ARA+I P +
Sbjct: 106 GLKM--LGVPRAELKARVKEALAMVDL-EGFEDRFVDQISGGQQQRVALARALILKPKVL 162
Query: 180 VLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
+ DEP S LD +++ + + + LQ++F++T L+++HD S +SD + +M G +++I
Sbjct: 163 LFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQI 222
Query: 240 LSIDD 244
S D
Sbjct: 223 GSPQD 227
>sp|P37009|AFUC_ECOLI PUTATIVE FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC
Length = 348
Score = 114 bits (283), Expect = 1e-24
Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 23/245 (9%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M K+F+ N+ K F +D I++ I +G+ L G SGCGK+T
Sbjct: 1 MTQKNFVELRNVTKRFGSNT-----------VIDNINLTIPQGQMVTLLGPSGCGKTTIL 49
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKR 119
RL+ L +P+EG I+ DG D+T R +++R + +VFQ +L P M++ + +
Sbjct: 50 RLVAGLEKPSEGQIFIDGEDVTH------RSIQQRDICMVFQS--YALFPHMSLGENVGY 101
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFV 179
L++ L E ++ E L V L E R+ ++SGGQ QRV++ARA+I P +
Sbjct: 102 GLKM--LGVPRAELKARVKEALAMVDL-EGFEDRFVDQISGGQQQRVALARALILKPKVL 158
Query: 180 VLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
+ DEP S LD +++ + + + LQ++F++T L+++HD S +SD + +M G +++I
Sbjct: 159 LFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQI 218
Query: 240 LSIDD 244
S D
Sbjct: 219 GSPQD 223
>gb|AAD21772.1| (J05278) ChrD [Ralstonia metallidurans]
Length = 268
Score = 114 bits (283), Expect = 1e-24
Identities = 80/245 (32%), Positives = 125/245 (50%), Gaps = 21/245 (8%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M+ F+ EN+ + F R G F A+ I ++I +GE L G SGCGKST L
Sbjct: 1 MEKFVSIENVGQTFKTRKGPFV-------ALRDIDLSIAEGEFVTLIGHSGCGKSTLLNL 53
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L PT G++ G +I R +VFQ+ SL P MT ++ + +E
Sbjct: 54 IAGLTRPTTGALICAGREIAGP--------RPERAVVFQN--HSLLPWMTCFENVHLGVE 103
Query: 123 -IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
+ +E+ + + + L VGL S+YPHE+SGG QRV IARA+ P +++
Sbjct: 104 RVFGQSETPAQLKARTHDHLALVGLTHARESKYPHEISGGMKQRVGIARALAMQPKVLLM 163
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVE 238
DEP ALD +A + + L+ + + T + ++HD+ ++DRI +M G + E
Sbjct: 164 DEPFGALDALTRAHLQDALLKIVARTRSTVVMVTHDVDEAVLLADRIVMMTNGPAATIGE 223
Query: 239 ILSID 243
IL +D
Sbjct: 224 ILRVD 228
>pir||S58789 ATP binding protein nrtC - oscillatoriacean cyanobacterium
>gi|1154891|emb|CAA79658.1| (Z19598) ATP binding protein
[Phormidium laminosum]
Length = 625
Score = 113 bits (279), Expect = 4e-24
Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 23/243 (9%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M F+ +++ + FP+ GG Y+ A+ I + IRKGE L G SGCGKST +
Sbjct: 1 MLPFVEIDHVDQVFPLPGG-----GEYI-ALKNIDLTIRKGEFVSLLGHSGCGKSTLLNI 54
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L +P G++ +G +T+ D M +VFQ+ SL P +T+ + + +
Sbjct: 55 IAGLAKPAAGALILEGRQVTEPGPDRM--------VVFQN--YSLLPWLTVRENIALAVN 104
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
S+ E+ + + ++ V L + P +LSGG QRV+IARA+ P ++LD
Sbjct: 105 RVMATASKSEREAIVEQHIDLVNL-RHAADKRPGQLSGGMKQRVAIARALSIRPKLLLLD 163
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIM------YLGKV 236
EP ALD ++ + + L+ + + LT + ++HD+ +SDRI ++ Y+G++
Sbjct: 164 EPFGALDALTRSSLQDQLMQIAEEHELTCIMVTHDVDEALLLSDRIVMLTNGPESYIGQI 223
Query: 237 VEI 239
+++
Sbjct: 224 MDV 226
>pir||S56643 ATP-binding protein nrtC - oscillatoriacean cyanobacterium
(fragment)
Length = 249
Score = 113 bits (279), Expect = 4e-24
Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 23/243 (9%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M F+ +++ + FP+ GG Y+ A+ I + IRKGE L G SGCGKST +
Sbjct: 1 MLPFVEIDHVDQVFPLPGG-----GEYI-ALKNIDLTIRKGEFVSLLGHSGCGKSTLLNI 54
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L +P G++ +G +T+ D M +VFQ+ SL P +T+ + + +
Sbjct: 55 IAGLAKPAAGALILEGRQVTEPGPDRM--------VVFQN--YSLLPWLTVRENIALAVN 104
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
S+ E+ + + ++ V L + P +LSGG QRV+IARA+ P ++LD
Sbjct: 105 RVMATASKSEREAIVEQHIDLVNL-RHAADKRPGQLSGGMKQRVAIARALSIRPKLLLLD 163
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIM------YLGKV 236
EP ALD ++ + + L+ + + LT + ++HD+ +SDRI ++ Y+G++
Sbjct: 164 EPFGALDALTRSSLQDQLMQIAEEHELTCIMVTHDVDEALLLSDRIVMLTNGPESYIGQI 223
Query: 237 VEI 239
+++
Sbjct: 224 MDV 226
>pir||T35941 probable ABC-type transport systsem ATP-binding protein -
Streptomyces coelicolor >gi|4158200|emb|CAA22763.1|
(AL035206) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 113 bits (279), Expect = 4e-24
Identities = 92/313 (29%), Positives = 138/313 (43%), Gaps = 30/313 (9%)
Query: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIE---PTEGSIYFDGIDITKLDK 86
V AV ++ GE L GESGCGKS LL L+ T G +D+ D+
Sbjct: 25 VAAVTDAHFDVAPGECLALIGESGCGKSVLASALLGLLPGNAQTAGRALLGDLDLLAADE 84
Query: 87 DEM-RKLRRRM-GIVFQDPKSSLNPRMTIYDTLKRPL-EIHRLAESEEEKYDKIVEILEA 143
+ R +R R+ G+V Q P + L P T+ L + E+ + + + E
Sbjct: 85 RTLARTVRGRLIGLVPQSPAAHLTPVRTVRSQLAETVAELTGVRGGRKALREAAGAAAER 144
Query: 144 VGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLL--- 200
+HL +PHELSGG QR + A A++ + ++ DEPT+ LD + + ++ L
Sbjct: 145 AAFPADHLDHHPHELSGGLAQRAATALALVGDAPLLLADEPTTGLDRDLVDRTVDELRRH 204
Query: 201 -------VNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGE-IYH 252
V + L I+HD++ ++DR+ +MY G++VE+ F H
Sbjct: 205 VDDAEGKVARGDAGSRALLMITHDLAAAARIADRVAVMYAGRIVELADAGAFFGAPGPRH 264
Query: 253 PYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLV 312
PY+ LL + P + G P +P GC F RC T C PPL
Sbjct: 265 PYSRGLLDALP-------DRGFTPIPGLPPELGALPGGCAFAARCDRATDACA-ALPPL- 315
Query: 313 EIKKDHYVACHYP 325
H VACH+P
Sbjct: 316 ----RHAVACHHP 324
>pir||S75959 nitrate transport protein C-1 - Synechocystis sp. (strain PCC 6803)
>gi|1001319|dbj|BAA10806.1| (D64006) nitrate transport
protein NrtC [Synechocystis sp.]
Length = 667
Score = 112 bits (278), Expect = 5e-24
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 20/244 (8%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M F+ +N+ K F + G Y+ A+ GI++ I+KGE L G SGCGKST +
Sbjct: 1 MSLFVAVDNIDKVFSLTDG-----GEYI-ALKGINLEIKKGEFVSLIGHSGCGKSTLLNM 54
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L P+EG + +G I + D+M ++FQ+ SL P +T+ + ++
Sbjct: 55 IAGLDLPSEGIVTLEGQRIKQPGPDKM--------VIFQN--YSLLPWLTVKQNIALAVD 104
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
S E+ + E + VGLG + + P ELSGG QRV+IARA+ P ++LD
Sbjct: 105 EVMKGASAAERKAIVEEHINLVGLGHA-VDKRPGELSGGMKQRVAIARALAIRPKLLLLD 163
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVEI 239
EP ALD + + L+ + ++ +T + ++HD+ +SDRI ++ G + I
Sbjct: 164 EPFGALDALTRGNLQEQLMRICEQYQVTAVMVTHDVDEAVLLSDRIVMLTNGPGSNIGGI 223
Query: 240 LSID 243
L +D
Sbjct: 224 LEVD 227
>gb|AAK41416.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 368
Score = 111 bits (275), Expect = 1e-23
Identities = 69/234 (29%), Positives = 129/234 (54%), Gaps = 17/234 (7%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M ++ EN+ K + ++K V + G+++ I KGE + G SG GK+T ++
Sbjct: 1 MMSYVKLENIWKEY-------EEKKRKVQVLRGLNLEIEKGEFVVILGPSGEGKTTILKI 53
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L+ +G +Y G + D++ RR+ +V Q+ ++ P M++YD + PL+
Sbjct: 54 IAGLLRQDKGHVYLRGEVV-----DDLPPKDRRVAMVPQN--YAIYPFMSVYDNIAFPLK 106
Query: 123 IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+ L++ E +K +++E+ + + + L R P +LSGGQ+QRV+IARA++ D +++D
Sbjct: 107 VMHLSKDEIKK--RVLEVARMLRI-DNLLERKPSQLSGGQMQRVAIARALVKGADIILMD 163
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKV 236
EP S LD V+ L LQR T ++++HD ++ ++ I++ G V
Sbjct: 164 EPLSNLDAQVRVVAREELKQLQRDLKPTIIYVTHDQVEALSLATKVAILHDGVV 217
>emb|CAB37661.1| (AJ224479) cdd4-like protein [Bacillus sphaericus]
Length = 311
Score = 110 bits (273), Expect = 2e-23
Identities = 76/246 (30%), Positives = 134/246 (53%), Gaps = 24/246 (9%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
+++ + T+NL K F AV I++ IRKGE +G G +G GK+T R
Sbjct: 8 RLEYIVQTQNLSKNFGKE-----------QAVSNINLQIRKGEIYGFLGPNGAGKTTTIR 56
Query: 62 LLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPL 121
+LL L++P+ G+I DI K + ++ +G + ++P S P +T Y+ L+
Sbjct: 57 MLLGLMKPSSGTIKIFQKDIVK----DRIQILANVGSLVENP--SYYPHLTAYENLEALR 110
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
+I + ++ +I E+L+ V L +E ++ S G QR+ IA A++ NP+ ++L
Sbjct: 111 KILGVPKT------RIDEVLQTVRL-KEAANKKVKGFSLGMKQRLGIAAALLHNPELLIL 163
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DEPT+ LD S +I NL+ L +++ +T + SH +S + M+ ++GI+ G ++ S
Sbjct: 164 DEPTNGLDPSGIIEIRNLIKRLPKEYGMTIIISSHLLSEIDQMATQVGIVSKGTLIFQDS 223
Query: 242 IDDFRK 247
I+ RK
Sbjct: 224 IEGMRK 229
>dbj|BAA77930.1| (D83536) Hypothetical ABC transporter ATP-binding protein in
thrW-argF intergenic region. [Escherichia coli]
Length = 348
Score = 110 bits (273), Expect = 2e-23
Identities = 78/245 (31%), Positives = 132/245 (53%), Gaps = 23/245 (9%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M K+F+ N+ K F +D I++ I +G+ L G SGCGK+T
Sbjct: 1 MTQKNFVELRNVTKRFGSNT-----------VIDNINLTIPQGQMVTLLGPSGCGKTTIL 49
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKR 119
RL+ L +P+EG I+ DG D+T R +++R + +VFQ +L P M++ + +
Sbjct: 50 RLVAGLEKPSEGQIFIDGEDVTH------RSIQQRDICMVFQS--YALFPHMSLGENVGY 101
Query: 120 PLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFV 179
L++ L E ++ E L V L E R+ ++SGGQ QRV+ RA+I P +
Sbjct: 102 GLKM--LGVPRAELKARVKEALAMVDL-EGFEDRFVDQISGGQQQRVAWPRALILKPKVL 158
Query: 180 VLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
+ DEP S LD +++ + + + LQ++F++T L+++HD S +SD + +M G +++I
Sbjct: 159 LFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQI 218
Query: 240 LSIDD 244
S D
Sbjct: 219 GSPQD 223
>pir||H70109 ABC transporter, ATP-binding protein homolog - Lyme disease
spirochete >gi|2687969|gb|AAC66474.1| (AE001121) ABC
transporter, ATP-binding protein [Borrelia burgdorferi]
Length = 240
Score = 109 bits (271), Expect = 4e-23
Identities = 63/217 (29%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
KM++ ++ +NL K +K+ + ++ +++ + KGE + G+SGCGKST
Sbjct: 14 KMENILIIKNLCK-------AYKKNKTKIQVIENLNLTVEKGEFISIQGKSGCGKSTLFN 66
Query: 62 LLLRLIEPTEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRP 120
++ + + G I GI + ++ + + R++G+VFQ+ +L ++ + + P
Sbjct: 67 MISGIDKIDSGEIISCGIFLKNANEKTLSLYKNRQIGLVFQN--YNLINEFSVIENIILP 124
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
+I +++E K +++++ + + E + YP ELSGG+ QRV+IARA+I P+ ++
Sbjct: 125 -QIISGQKTKETINKKALDLMKILKI-ENRANHYPSELSGGESQRVAIARALINEPNIIL 182
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHD 217
DEPT LD+S + NLL+N + F T + +SH+
Sbjct: 183 CDEPTGNLDLSTAKTVENLLINTAKNFKKTLILVSHN 219
>dbj|BAA05389.1| (D26358) CmpD [Synechococcus sp.]
Length = 278
Score = 109 bits (270), Expect = 5e-23
Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 18/234 (7%)
Query: 6 FIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
F++ EN+ K + G + +DG+++ +++GE + G SGCGKST ++
Sbjct: 20 FLIVENVSKIYETPKGPYT-------VLDGVNLTVQEGEFICVIGHSGCGKSTLLNMVSG 72
Query: 66 LIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHR 125
+P+ GS+ G +I + D M +VFQ+ +L P MT Y+ + ++
Sbjct: 73 FNQPSHGSVRLKGKEIDRPGPDRM--------VVFQN--YALLPWMTAYENVYLAVDCVN 122
Query: 126 LAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPT 185
E EK + + E L VGL E + ++SGG QRV+IARA+ P+ ++LDEP
Sbjct: 123 PQMREGEKREIVREHLAMVGLTEAAEKKIT-QISGGMKQRVAIARALSIRPEVLILDEPF 181
Query: 186 SALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
ALD + ++ L+ + T L I+HDI +++DR+ +M G I
Sbjct: 182 GALDAITKEELQEELLKIWNDHRCTVLMITHDIDEALFLADRLVMMTNGPAANI 235
>pir||S75960 nitrate transport protein D-1 - Synechocystis sp. (strain PCC 6803)
>gi|1001320|dbj|BAA10807.1| (D64006) nitrate transport
protein NrtD [Synechocystis sp.]
Length = 282
Score = 109 bits (269), Expect = 6e-23
Identities = 73/244 (29%), Positives = 124/244 (49%), Gaps = 21/244 (8%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K F+ EN+ K +P G + ++ +++ + +GE + G SGCGKST
Sbjct: 19 KTTAFLTIENVSKVYPTAKGPYT-------VLENVNLTVNEGEFICVIGHSGCGKSTLLN 71
Query: 62 LLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPL 121
++ PT+GS+ G IT+ D M +VFQ+ +L P +T + + +
Sbjct: 72 MVSGFASPTDGSVQVGGKIITEPGPDRM--------VVFQN--YALLPWLTALENVYIAV 121
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
+ ++E EK + L VGL + + + P ++SGG QRVSIARA+ P+ ++L
Sbjct: 122 DAVHSQKTEAEKRAIAKDHLAMVGLTDS-MDKKPGQISGGMKQRVSIARALAIRPEVLIL 180
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLG---KVVE 238
DEP ALD + ++ L+ + T L I+HDI +++DR+ +M G + E
Sbjct: 181 DEPFGALDAITKEELQEELLQIWNDHRCTVLMITHDIDEALFLADRLVMMTNGPHANIGE 240
Query: 239 ILSI 242
I++I
Sbjct: 241 IMTI 244
>emb|CAA05977.1| (AJ003195) ATP-binding subunit [Anabaena variabilis]
Length = 244
Score = 109 bits (269), Expect = 6e-23
Identities = 78/248 (31%), Positives = 134/248 (53%), Gaps = 17/248 (6%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M+ + I ++L Y+ G K++ L+ I++ I GE + G SG GK+T
Sbjct: 1 MRQEAVIAIKSLNHYYGK--GALKRQILF-----DINLEIYPGEIVIMTGPSGSGKTTLL 53
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
L+ L EG++ F G++++ ++++ ++RR +G +FQ +L +T ++
Sbjct: 54 SLIGGLRSVQEGNLQFLGVELSGASQNKLVQIRRSIGYIFQ--AHNLLGFLTARQNVQMA 111
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
+E++ S+EE K +L+AVGL E + YP LSGGQ QRV+IARA++ NP V+
Sbjct: 112 VELNEHI-SQEEAIAKAEAMLKAVGL-ENRVDYYPDNLSGGQKQRVAIARALVNNPPLVL 169
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRI-----GIMYLGK 235
DEPT+ALD ++ ++ L + + L ++HD +L ++DRI GI+
Sbjct: 170 ADEPTAALDKQSGRDVVEIMQRLAKDQGTSILLVTHDNRILD-IADRIVEMEDGILARDS 228
Query: 236 VVEILSID 243
I+S D
Sbjct: 229 QTAIVSYD 236
>pir||A55541 heterocyst maturation protein devA - Anabaena sp. (strain PCC 7120)
>gi|407773|emb|CAA53174.1| (X75422) devA [Anabaena sp.]
>gi|1490224|emb|CAA67987.1| (X99672) devA [Anabaena sp.]
Length = 244
Score = 108 bits (268), Expect = 8e-23
Identities = 78/248 (31%), Positives = 133/248 (53%), Gaps = 17/248 (6%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
M+ + I ++L Y+ G K++ L+ I++ I GE + G SG GK+T
Sbjct: 1 MRQEAVIAIKSLNHYYGK--GALKRQILF-----DINLEIYPGEIVIMTGPSGSGKTTLL 53
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
L+ L EG++ F G++++ ++++ ++RR +G +FQ +L +T ++
Sbjct: 54 SLIGGLRSVQEGNLQFLGVELSGASQNKLVQIRRSIGYIFQ--AHNLLGFLTARQNVQMA 111
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
+E++ S+EE K +L AVGL E + YP LSGGQ QRV+IARA++ NP V+
Sbjct: 112 VELNEHI-SQEEAIAKAEAMLTAVGL-ENRVDYYPENLSGGQKQRVAIARALVNNPPLVL 169
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRI-----GIMYLGK 235
DEPT+ALD ++ ++ L + + L ++HD +L ++DRI GI+
Sbjct: 170 ADEPTAALDKQSGRDVVEIMQRLAKDQGTSILLVTHDNRILD-IADRIVEMEDGILARDS 228
Query: 236 VVEILSID 243
I+S D
Sbjct: 229 QTAIVSYD 236
>pir||B64458 high-affinity branched-chain amino acid transport ATP-binding
protein homolog - Methanococcus jannaschii
>gi|1591902|gb|AAB99273.1| (U67567) high-affinity
branched-chain amino acid transport ATP-binding protein
(braF) [Methanococcus jannaschii]
Length = 257
Score = 108 bits (268), Expect = 8e-23
Identities = 78/246 (31%), Positives = 128/246 (51%), Gaps = 32/246 (13%)
Query: 5 DFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLL 64
+ + TEN+ KYF G FK A+DG+SI++ KG+ + G +G GKST ++
Sbjct: 6 EILRTENIVKYF----GEFK-------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54
Query: 65 RLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIV--FQDPKSSLNPRMTIYDTL----- 117
++ EG +YF+ DIT + E+ GIV FQ P+ MT+ + L
Sbjct: 55 GFLKADEGRVYFENKDITNKEPAEL----YHYGIVRTFQTPQPL--KEMTVLENLLIGEI 108
Query: 118 ---KRPLE---IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARA 171
+ PL + EEE +K +ILE + L + R ELSGGQ++ V I RA
Sbjct: 109 NPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLVEIGRA 167
Query: 172 IITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIM 231
++TNP +V+DEP + + + I N ++ L+ K +T+L I H + ++ D + +M
Sbjct: 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVM 226
Query: 232 YLGKVV 237
+ G+++
Sbjct: 227 FNGQII 232
>emb|CAB88835.1| (AL353832) putative ABC-transport protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 354
Score = 108 bits (268), Expect = 8e-23
Identities = 70/235 (29%), Positives = 130/235 (54%), Gaps = 12/235 (5%)
Query: 6 FIVTENLKKYFPVRG--GLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
FI + ++K F VR G K++ V AVDG+S + +GE G G +G GKST ++L
Sbjct: 37 FIELDGVEKVFDVRRKTGFLKRERRQVRAVDGLSFTVSRGEMVGYIGPNGAGKSTTIKML 96
Query: 64 LRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEI 123
++ P+ G + GID ++ E +L R+G+VF +++L + + D+ + +
Sbjct: 97 TGILTPSGGRLRVAGIDPSR----ERIRLAHRIGVVFGQ-RTTLWWDLPLIDSYRLMHRM 151
Query: 124 HRLAESE-EEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
+R+ ++ E D+ VE+L+ +E L +LS GQ R IA A++ +P+ + LD
Sbjct: 152 YRIPDARYRENLDRCVELLQL----QELLDVPVRQLSLGQRMRGDIAAALLHDPEVLYLD 207
Query: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
EPT LD+ +A++ L++L + T L +HD+ ++ + R+ ++ G+++
Sbjct: 208 EPTIGLDVVSKAKVRGFLLDLNAERGTTVLLTTHDLQDIEQLCSRVMVIDHGRLM 262
>pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB) homolog -
Lyme disease spirochete >gi|2688112|gb|AAC66606.1|
(AE001132) phosphate ABC transporter, ATP-binding
protein (pstB) [Borrelia burgdorferi]
Length = 260
Score = 108 bits (267), Expect = 1e-22
Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 28/252 (11%)
Query: 2 KMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGR 61
K + I TENL ++ FK A++ I++ I K L G SGCGKSTF R
Sbjct: 9 KNEVIIETENLNLFYTD----FK-------ALNKINMKILKNSITALIGPSGCGKSTFLR 57
Query: 62 LLLRLIE-----PTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDT 116
L R+ + EG++ ++G +I + D + +LRR++G+VFQ P L M+IYD
Sbjct: 58 TLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL-ELRRKIGMVFQTPNPFL---MSIYDN 113
Query: 117 LKRPLEIHRLAESEEEKYDKIVE-ILEAVGLGEE---HLSRYPHELSGGQLQRVSIARAI 172
+ +IH +++K D+IVE L+ L E L LSGGQ QR+ IAR +
Sbjct: 114 ISYGPKIH--GTKDKKKLDEIVEQSLKKSALWNEVKDKLHTNALSLSGGQQQRLCIARTL 171
Query: 173 ITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMY 232
P+ +++DEPTSALD +I L++NL+ + T + ++H++ +SDR
Sbjct: 172 AIEPNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFL 229
Query: 233 LGKVVEILSIDD 244
G + E S D+
Sbjct: 230 NGCIEEESSTDE 241
>pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii
>gi|3257230|dbj|BAA29913.1| (AP000003) 312aa long
hypothetical ATP-binding protein [Pyrococcus horikoshii]
Length = 312
Score = 107 bits (265), Expect = 2e-22
Identities = 78/239 (32%), Positives = 130/239 (53%), Gaps = 19/239 (7%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFG 60
+KM I NL KY+ G F AV G++ ++ +GE FG G +G GK+T
Sbjct: 2 IKMNVVIEAINLTKYY----GNFP-------AVRGVTFSVNEGEVFGFLGPNGAGKTTTI 50
Query: 61 RLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRP 120
R+L +++PT G + G D+T+ + E K R+RMGIV + ++ +T LK
Sbjct: 51 RMLTGVLKPTSGQVRVLGYDMTR--EPEKLKARQRMGIVPEMANPYID--LTAMQNLKLM 106
Query: 121 LEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
E++ L + E EK + +E+L+ L E+ + S G QR+ +A A+I +P+
Sbjct: 107 GELYGLPKWEIEK--RSIELLKLFELYEKRNIKV-RGFSKGMRQRLVLAMAMIADPELYF 163
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEI 239
LDEPTS LD+ + A+I+ ++ ++K T +H+++ + +RIGI+ GK+V I
Sbjct: 164 LDEPTSGLDV-ISARIIKDIIRDEKKAGKTIFLTTHNMNDANELCERIGIIRKGKLVAI 221
>sp|P73450|NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC >gi|7445984|pir||S77387
nitrate transport protein C-2 - Synechocystis sp.
(strain PCC 6803) >gi|1652569|dbj|BAA17490.1| (D90906)
nitrate transport protein NrtC [Synechocystis sp.]
Length = 670
Score = 107 bits (264), Expect = 2e-22
Identities = 75/245 (30%), Positives = 130/245 (52%), Gaps = 27/245 (11%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M FI +++ + FP+ G Y+ A+ I + I +GE L G SGCGKST +
Sbjct: 1 MMPFIEIDHVDRIFPLPDG-----GRYI-ALKNIELKISQGEFISLIGHSGCGKSTLLNM 54
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLE 122
+ L +PT G + +G +IT+ + M +VFQ+ SL P +T+ + +
Sbjct: 55 ISGLDKPTFGGVIMEGKEITEPGPERM--------VVFQN--YSLLPWLTVRQNIALAVN 104
Query: 123 --IHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVV 180
+ L + E+EK I + + VGL + + P ELSGG QRV+IARA+ T P ++
Sbjct: 105 RVLRDLPKPEQEKI--IDDNIALVGL-QRAAHKRPGELSGGMKQRVAIARALSTRPKVLL 161
Query: 181 LDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIM------YLG 234
LDEP ALD + + L+ + ++ +T + ++HD+ +SDR+ ++ ++G
Sbjct: 162 LDEPFGALDALTRGNLQERLMEIVQESGVTCIMVTHDVDEALLLSDRVVMLTTGPEAHIG 221
Query: 235 KVVEI 239
+++E+
Sbjct: 222 QILEV 226
>pir||B70327 ABC transporter - Aquifex aeolicus >gi|2982983|gb|AAC06596.1|
(AE000682) ABC transporter [Aquifex aeolicus]
Length = 224
Score = 105 bits (260), Expect = 7e-22
Identities = 74/236 (31%), Positives = 133/236 (56%), Gaps = 19/236 (8%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
M + + EN+KK +RG + GIS++++KGE + G SG GKST +
Sbjct: 1 MAEILRAENIKKV--IRG---------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYI 49
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPL 121
L L PTEG ++ +G ++ ++ E+ LR R++G VFQ L P +T + + P+
Sbjct: 50 LGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF--HYLIPELTALENVIVPM 107
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
++ + ++E ++ +L +GLG++ LSR P+ELSGG+ QRV+IARA+ P +
Sbjct: 108 L--KMGKPKKEAKERGEYLLSELGLGDK-LSRKPYELSGGEQQRVAIARALANEPILLFA 164
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
DEPT LD + +++++ + + + + + ++H+ + + ++ R M GKVV
Sbjct: 165 DEPTGNLDSANTKRVMDIFLKI-NEGGTSIVMVTHERELAE-LTHRTLEMKDGKVV 218
>gb|AAG32539.1| (AY005472) SalX [Streptococcus salivarius]
Length = 245
Score = 105 bits (259), Expect = 9e-22
Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 19/251 (7%)
Query: 3 MKDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRL 62
MK ++ + KKY N +A+D I++ + KGE + G SG GK+T +
Sbjct: 1 MKQLVLKDVCKKY----------PNQLNYALDHINLIVEKGEFVAVMGRSGSGKTTLLNV 50
Query: 63 LLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRR-MGIVFQDPKSSLNPRMTIYDTLKRPL 121
+ + G+IY +I+ E R+ +G VFQD L +TI + + L
Sbjct: 51 TSIIDKIDSGNIYCADKEISTFSDKEATNFRKNDIGFVFQD--YMLLDSLTIRENISVAL 108
Query: 122 EIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVL 181
+ + S+ + D I + L E+ L +YP++LSGGQ QRVSI RAII +P+ +
Sbjct: 109 SLKNVDSSKID--DLINSYAKRFNLYEQ-LKKYPYQLSGGQRQRVSIIRAIIKDPEIIFA 165
Query: 182 DEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILS 241
DEPT ALD+ + + +L + + +T L ++HD+ Y +DR+ ++ GK+ +
Sbjct: 166 DEPTGALDLKSSEETMMILSEINKTEKVTILMVTHDVLSASY-ADRVILLKDGKL--HME 222
Query: 242 IDDFRKGEIYH 252
ID GE ++
Sbjct: 223 IDKKDCGESFY 233
>dbj|BAA96918.1| (AB019228) ABC transporter-like protein [Arabidopsis thaliana]
>gi|9964121|gb|AAG09829.1|AF287699_1 (AF287699)
half-molecule ABC transporter ATM3 [Arabidopsis
thaliana]
Length = 728
Score = 103 bits (255), Expect = 3e-21
Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 25/250 (10%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVH------AVDGISINIRKGETFGLAGESGC 54
++ K I + K ++GG + +N++ +DGIS + G++ + G SG
Sbjct: 457 LEEKSDITNTSDAKPLVLKGGNIEFENVHFSYLPERKILDGISFVVPAGKSVAIVGTSGS 516
Query: 55 GKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIY 114
GKST R+L R + G+I DG DI ++ D LR +G+V QD +
Sbjct: 517 GKSTILRMLFRFFDTDSGNIRIDGQDIKEVRLDS---LRSSIGVVPQDT-------VLFN 566
Query: 115 DTLKRPLEIHRLAESEEEKYD--KIVEILEAVGLGEEHLSRYPHE----LSGGQLQRVSI 168
DT+ + RL+ +EEE Y+ + I E + + S E LSGG+ QRV++
Sbjct: 567 DTIFHNIHYGRLSATEEEVYEAARRAAIHETISNFPDKYSTIVGERGLKLSGGEKQRVAL 626
Query: 169 ARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRI 228
AR + +P ++ DE TSALD + +A+ILN L L N T +FI+H ++ D I
Sbjct: 627 ARTFLKSPAILLCDEATSALDSTTEAEILNALKALAS--NRTSIFIAHRLTTAM-QCDEI 683
Query: 229 GIMYLGKVVE 238
++ GKVVE
Sbjct: 684 VVLENGKVVE 693
>emb|CAB97048.1| (AJ272202) mitochondrial half-ABC transporter [Arabidopsis
thaliana]
Length = 728
Score = 103 bits (255), Expect = 3e-21
Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 25/250 (10%)
Query: 1 MKMKDFIVTENLKKYFPVRGGLFKQKNLYVH------AVDGISINIRKGETFGLAGESGC 54
++ K I + K ++GG + +N++ +DGIS + G++ + G SG
Sbjct: 457 LEEKSDITNTSDAKPLVLKGGNIEFENVHFSYLPERKILDGISFVVPAGKSVAIVGTSGS 516
Query: 55 GKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEMRKLRRRMGIVFQDPKSSLNPRMTIY 114
GKST R+L R + G+I DG DI ++ D LR +G+V QD +
Sbjct: 517 GKSTILRMLFRFFDTDSGNIRIDGQDIKEVRLDS---LRSSIGVVPQDT-------VLFN 566
Query: 115 DTLKRPLEIHRLAESEEEKYD--KIVEILEAVGLGEEHLSRYPHE----LSGGQLQRVSI 168
DT+ + RL+ +EEE Y+ + I E + + S E LSGG+ QRV++
Sbjct: 567 DTIFHNIHYGRLSATEEEVYEAARRAAIHETISNFPDKYSTIVGERGLKLSGGEKQRVAL 626
Query: 169 ARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRI 228
AR + +P ++ DE TSALD + +A+ILN L L N T +FI+H ++ D I
Sbjct: 627 ARTFLKSPAILLCDEATSALDSTTEAEILNALKALAS--NRTSIFIAHRLTTAM-QCDEI 683
Query: 229 GIMYLGKVVE 238
++ GKVVE
Sbjct: 684 VVLENGKVVE 693
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131144157
Number of Sequences: 2977
Number of extensions: 5749137
Number of successful extensions: 23986
Number of sequences better than 1.0e-10: 2093
Number of HSP's better than 0.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 1636
Number of HSP's that attempted gapping in prelim test: 19720
Number of HSP's gapped (non-prelim): 2605
length of query: 345
length of database: 189,106,746
effective HSP length: 55
effective length of query: 290
effective length of database: 156,189,961
effective search space: 45295088690
effective search space used: 45295088690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)