BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0101 (PAB0101) DE:Hypothetical protein
(344 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75203 hypothetical protein PAB0101 - Pyrococcus abyssi (st... 686 0.0
sp|O57890|Y151_PYRHO HYPOTHETICAL PROTEIN PH0151 >gi|7518492|pir... 550 e-156
sp|Q58586|YB86_METJA HYPOTHETICAL PROTEIN MJ1186 >gi|2128717|pir... 325 4e-88
gi|11497714 conserved hypothetical protein [Archaeoglobus fulgid... 292 4e-78
gb|AAG19865.1| (AE005071) Vng1595c [Halobacterium sp. NRC-1] 94 2e-18
>pir||C75203 hypothetical protein PAB0101 - Pyrococcus abyssi (strain Orsay)
>gi|5457583|emb|CAB49074.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 344
Score = 686 bits (1752), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 MRLGLKIASLAIVFLILGCLGGGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKE 60
MRLGLKIASLAIVFLILGCLGGGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKE
Sbjct: 1 MRLGLKIASLAIVFLILGCLGGGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKE 60
Query: 61 LGIKVTFQDEASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIV 120
LGIKVTFQDEASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIV
Sbjct: 61 LGIKVTFQDEASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIV 120
Query: 121 IAFTEKSKYADEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKPI 180
IAFTEKSKYADEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKPI
Sbjct: 121 IAFTEKSKYADEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKPI 180
Query: 181 FETLVEKTTNIYANGTHIYAPKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYKSVAE 240
FETLVEKTTNIYANGTHIYAPKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYKSVAE
Sbjct: 181 FETLVEKTTNIYANGTHIYAPKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYKSVAE 240
Query: 241 QHNLKYITLPNEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNRELAL 300
QHNLKYITLPNEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNRELAL
Sbjct: 241 QHNLKYITLPNEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNRELAL 300
Query: 301 EFLKFLLSEKGKEIFRENHQDFLTPPVAFGNVPEEIKGLVEIKE 344
EFLKFLLSEKGKEIFRENHQDFLTPPVAFGNVPEEIKGLVEIKE
Sbjct: 301 EFLKFLLSEKGKEIFRENHQDFLTPPVAFGNVPEEIKGLVEIKE 344
>sp|O57890|Y151_PYRHO HYPOTHETICAL PROTEIN PH0151 >gi|7518492|pir||E71236 hypothetical
protein PH0151 - Pyrococcus horikoshii
>gi|3256537|dbj|BAA29220.1| (AP000001) 340aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 340
Score = 550 bits (1403), Expect = e-156
Identities = 267/335 (79%), Positives = 306/335 (90%), Gaps = 5/335 (1%)
Query: 10 LAIVFLILGCLGGGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKELGIKVTFQD 69
L + F+ILGCLG E A+LIIFHAGSLS+P SQ+E +F KYA+++LG+KVTFQD
Sbjct: 11 LLLSFIILGCLGSESRE-----ARLIIFHAGSLSIPLSQVEEKFTKYAQEKLGVKVTFQD 65
Query: 70 EASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIVIAFTEKSKY 129
EASGSVKAVRKVTDL K+ADIVAVADYTLIPQLM+PNYTDFYVLFATNEIVIAFT KSKY
Sbjct: 66 EASGSVKAVRKVTDLKKRADIVAVADYTLIPQLMIPNYTDFYVLFATNEIVIAFTNKSKY 125
Query: 130 ADEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKPIFETLVEKTT 189
ADEMLKNPDKWYEIL+R DVSFGFSDPNQDPCGYRSVMVMKLA+LYYG+PIF+ LVEKTT
Sbjct: 126 ADEMLKNPDKWYEILSRPDVSFGFSDPNQDPCGYRSVMVMKLAELYYGRPIFKELVEKTT 185
Query: 190 NIYANGTHIYAPKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYKSVAEQHNLKYITL 249
NIY+NGT IYAPKEII+KDKRV++RPKETDLVGLVESGSLDY FIYKSVA+QH+L YITL
Sbjct: 186 NIYSNGTRIYAPKEIIIKDKRVIMRPKETDLVGLVESGSLDYIFIYKSVAKQHHLSYITL 245
Query: 250 PNEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNRELALEFLKFLLSE 309
P++INL DF+KADFY +VSITLGSTGKTI AKPIVYGITVLK+APNRELA+EFL+FLL
Sbjct: 246 PDDINLGDFNKADFYGRVSITLGSTGKTIKAKPIVYGITVLKNAPNRELAIEFLRFLLGN 305
Query: 310 KGKEIFRENHQDFLTPPVAFGNVPEEIKGLVEIKE 344
+G++IF +N+Q+FL+PPVAFGNVP EI+ LVE+K+
Sbjct: 306 EGRKIFEDNYQEFLSPPVAFGNVPPEIRRLVEVKD 340
>sp|Q58586|YB86_METJA HYPOTHETICAL PROTEIN MJ1186 >gi|2128717|pir||A64448 hypothetical
protein MJ1186 - Methanococcus jannaschii
>gi|1591814|gb|AAB99190.1| (U67560) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 346
Score = 325 bits (825), Expect = 4e-88
Identities = 180/348 (51%), Positives = 238/348 (67%), Gaps = 19/348 (5%)
Query: 7 IASLAIVFLIL-GCLG----GGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKEL 61
I+ L IV +L GC+ G + Q+ L IFHAGSLSVPF + E F K
Sbjct: 8 ISILLIVGTVLCGCMEQENVGQQNSEAQEKIVLKIFHAGSLSVPFEEYEKMFEKEHPN-- 65
Query: 62 GIKVTFQDEASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIVI 121
V + E +GSV VRK+ DLGKKADI+A ADY+LIPQ+M+P Y D+YV+FA NEIV+
Sbjct: 66 ---VDVEREPAGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 122
Query: 122 AFTEKSKYADEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKP-I 180
A+T+KSKY DE+ N WY+IL R DV GFS+PN DPCGYR+ MV++LA+LYY P I
Sbjct: 123 AYTDKSKYKDEI--NSTNWYKILQRPDVKIGFSNPNDDPCGYRTQMVLQLAELYYKDPTI 180
Query: 181 FETLVEKTTNIYA---NGTH-IYAPKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYK 236
++ LV K +NI NGT+ I PKE+ V ++ +R KETDL+ +E+G+ DY FIYK
Sbjct: 181 YDNLVLKHSNIKVEENNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYK 240
Query: 237 SVAEQHNLKYITLPNEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNR 296
SVA QH+LKYI LP EINL + AD YKKV++ + + KTI AKPIVYG+TV +AP++
Sbjct: 241 SVANQHHLKYIELPKEINLGYYEYADTYKKVALKIIAKNKTINAKPIVYGMTVPTNAPHK 300
Query: 297 ELALEFLKFLLSEKGKEIFRENHQDFLTPPVAFGNVPEEIKGLVEIKE 344
+ A+EF+KF+L E+ N Q + P VA+GNVPEE+K LV+I++
Sbjct: 301 KEAIEFVKFVLGH--PEVLENNGQPAIIPAVAYGNVPEELKDLVKIEK 346
>gi|11497714 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6686085|sp|O30142|Y094_ARCFU HYPOTHETICAL PROTEIN
AF0094 >gi|7482967|pir||F69261 conserved hypothetical
protein AF0094 - Archaeoglobus fulgidus
>gi|2650554|gb|AAB91135.1| (AE001100) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 342
Score = 292 bits (740), Expect = 4e-78
Identities = 159/340 (46%), Positives = 223/340 (64%), Gaps = 21/340 (6%)
Query: 10 LAIVFLILGCLGGGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKELGIKVTFQD 69
L + +LGC T KL +FHAGSL+ P + F EK ++V Q
Sbjct: 16 LMLALFLLGCSSNVNTNV-----KLKVFHAGSLTEPMKAFKRAF---EEKHPNVEV--QT 65
Query: 70 EASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIVIAFTEKSKY 129
EA+GS +RKVT+LG+KAD++A ADYTLI ++M P + ++ ++FA N+IV+A+ S+Y
Sbjct: 66 EAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLAYRNDSRY 125
Query: 130 ADEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKP-IFETLVEKT 188
ADE+ N WYEIL R DV FGFS+PN DPCGYRS+M ++LA+LYY P IF+ LV K
Sbjct: 126 ADEI--NSQNWYEILKRPDVRFGFSNPNDDPCGYRSLMAIQLAELYYNDPTIFDELVAKN 183
Query: 189 TNI---YANGTHIY---APKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYKSVAEQH 242
+N+ NG+++ + + I + +++IR E +L+ LVESG LDYFFIYKSVA+QH
Sbjct: 184 SNLRFSEDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQH 243
Query: 243 NLKYITLPNEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNRELALEF 302
++ LP EI+L A+ Y KV + L + GK + KPIVYGIT+ K+A NRELA+EF
Sbjct: 244 GFNFVELPVEIDLSSPDYAELYSKVKVVL-ANGKEVTGKPIVYGITIPKNAENRELAVEF 302
Query: 303 LKFLLSEKGKEIFRENHQDFLTPPVAFGNVPEEIKGLVEI 342
+K ++SE+G+EI RE Q+ L PP A VP +K +VE+
Sbjct: 303 VKLVISEEGQEILRELGQEPLVPPRADTAVP-SLKAMVEV 341
>gb|AAG19865.1| (AE005071) Vng1595c [Halobacterium sp. NRC-1]
Length = 309
Score = 94.4 bits (231), Expect = 2e-18
Identities = 75/296 (25%), Positives = 123/296 (41%), Gaps = 35/296 (11%)
Query: 11 AIVFLILGCLGGGETETGQKTAKLIIFHAGSLSVPFSQLESEFAKYAEKELGIKVTFQDE 70
AI+ GCL G + A + + AGSL+ S +E E T + E
Sbjct: 18 AIIGTTAGCLTGAD-------ASIHVLAAGSLT---STIEDHIRPAFED--ATDHTLRPE 65
Query: 71 ASGSVKAVRKVTDLGKKADIVAVADYTLIPQLMVPNYTDFYVLFATNEIVIAFTEKSKYA 130
GS ++ ++D K D+ AD TL+ + + D+ + FA+N + I + +
Sbjct: 66 YHGSTTLLQLISDGTKHPDVAISADATLLRTRLFDAHADWALEFASNRLGICYVPSTPLG 125
Query: 131 DEMLKNPDKWYEILAREDVSFGFSDPNQDPCGYRSVMVMKLADLYYGKPIFETLVEKTTN 190
+ W + + SDP DP GYR++M LA + P ++ T
Sbjct: 126 RRLAAGTPWWRAAVDAAPDTIAVSDPALDPLGYRTLMAFTLAATAHDAPDLRADLDPAT- 184
Query: 191 IYANGTHIYAPKEIIVKDKRVVIRPKETDLVGLVESGSLDYFFIYKSVAEQHNLKYITLP 250
V +P E+ L+ VE+G+ +Y+++A H+L ++ P
Sbjct: 185 ---------------------VTKPSESQLLADVETGNHAAAVVYENMALDHDLPFLGFP 223
Query: 251 NEINLKDFSKADFYKKVSITLGSTGKTIYAKPIVYGITVLKDAPNRELALEFLKFL 306
+ N +AD Y + T G I+ +PI Y TVL DA N F++FL
Sbjct: 224 DAYNFAAPERADHYASATYTT-DDGTRIHGRPITYATTVLNDASNTAGGRAFVRFL 278
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123646541
Number of Sequences: 2977
Number of extensions: 5060316
Number of successful extensions: 11917
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11902
Number of HSP's gapped (non-prelim): 6
length of query: 344
length of database: 189,106,746
effective HSP length: 57
effective length of query: 287
effective length of database: 154,992,987
effective search space: 44482987269
effective search space used: 44482987269
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)