BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0105 (PAB0105) DE:Hypothetical protein
         (226 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75204 hypothetical protein PAB0105 - Pyrococcus abyssi (st...   453  e-127
pir||D71931 hypothetical protein jhp0455 - Helicobacter pylori (...    82  4e-15

>pir||C75204 hypothetical protein PAB0105 - Pyrococcus abyssi (strain Orsay)
           >gi|5457591|emb|CAB49082.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 226
           
 Score =  453 bits (1153), Expect = e-127
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MIHLTSVEASVSFENGKIVVRLPITRPTSKIRVKKIENGVGIPVSTRKKSFPSDENLRDY 60
           MIHLTSVEASVSFENGKIVVRLPITRPTSKIRVKKIENGVGIPVSTRKKSFPSDENLRDY
Sbjct: 1   MIHLTSVEASVSFENGKIVVRLPITRPTSKIRVKKIENGVGIPVSTRKKSFPSDENLRDY 60

Query: 61  YIEWQISYARDGKYDYELSRMVRLAHEHGILTYNDIYELLKFADDVKSYLEDKGIRREST 120
           YIEWQISYARDGKYDYELSRMVRLAHEHGILTYNDIYELLKFADDVKSYLEDKGIRREST
Sbjct: 61  YIEWQISYARDGKYDYELSRMVRLAHEHGILTYNDIYELLKFADDVKSYLEDKGIRREST 120

Query: 121 NEELYGFNIYEDVYPVAKKELPSGEFIGIVLKHKQRAVGYQSMVYVCIPLTNVEPSLAGR 180
           NEELYGFNIYEDVYPVAKKELPSGEFIGIVLKHKQRAVGYQSMVYVCIPLTNVEPSLAGR
Sbjct: 121 NEELYGFNIYEDVYPVAKKELPSGEFIGIVLKHKQRAVGYQSMVYVCIPLTNVEPSLAGR 180

Query: 181 VARRNEVVKYEVPVDLMKELLKAFIIASETHKNDIVKFLRSIIGTS 226
           VARRNEVVKYEVPVDLMKELLKAFIIASETHKNDIVKFLRSIIGTS
Sbjct: 181 VARRNEVVKYEVPVDLMKELLKAFIIASETHKNDIVKFLRSIIGTS 226


>pir||D71931 hypothetical protein jhp0455 - Helicobacter pylori (strain J99)
           >gi|4154980|gb|AAD06022.1| (AE001479) putative
           [Helicobacter pylori J99]
           Length = 251
           
 Score = 82.3 bits (200), Expect = 4e-15
 Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 41/249 (16%)

Query: 11  VSFENGKIVVRLPITRPTSKIRVK--KIENGVGIPVSTRKKSFPSDENLRDYYIEWQISY 68
           VS +   I V +P+T  + K RVK     +  GI  +TRK  F        +Y+EWQI Y
Sbjct: 6   VSGDKKVIEVSIPLTSISGKARVKIRHAFSDYGISTATRKIPFSLK-----HYVEWQIGY 60

Query: 69  --------------ARDGKYD-----------YELSRMVRLAHEHGILTYNDIYELLKFA 103
                          +D KY            YELS M+  A   G+++  ++   LKF 
Sbjct: 61  DVPIKDKEKFELTTLKDEKYHFLGANNKVKTLYELSEMIYYAKRLGLISLENLENTLKFL 120

Query: 104 DDVKSYLEDK-GIRRESTNEELYG---FNIYEDVYPVAKKELPSGEFIGIVLKHKQRAVG 159
           +  K ++ED   I RE      +G   F +    YP+        E   IV+K +Q    
Sbjct: 121 EKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPLLIHSFDDNELSEIVIKEQQYGSK 180

Query: 160 YQSMVYVCIPLTNVEPS--LAGRVARRNE---VVKYEVPVDLMKELLKAFIIASETHKND 214
            Q+M+Y C  +  ++ +  L  R A   E   ++ +E    +  E+LK F + S+ H ND
Sbjct: 181 TQAMLYFCFSILELKTATPLLNRTAMPKEHALLIIHETNALVFLEMLKIFGLLSQVHHND 240

Query: 215 IVKFLRSII 223
           ++K L  I+
Sbjct: 241 VLKILEKIL 249


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83153680
Number of Sequences: 2977
Number of extensions: 3553598
Number of successful extensions: 8101
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8097
Number of HSP's gapped (non-prelim): 2
length of query: 226
length of database: 189,106,746
effective HSP length: 56
effective length of query: 170
effective length of database: 155,591,474
effective search space: 26450550580
effective search space used: 26450550580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)