BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0108 (PAB0108) DE:Hypothetical protein
         (240 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75204 hypothetical protein PAB0108 - Pyrococcus abyssi (st...   477  e-134
pir||B71240 hypothetical protein PH0180 - Pyrococcus horikoshii ...   429  e-119

>pir||G75204 hypothetical protein PAB0108 - Pyrococcus abyssi (strain Orsay)
           >gi|5457595|emb|CAB49086.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 240
           
 Score =  477 bits (1214), Expect = e-134
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MVNMEPDIFYILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGILQS 60
           MVNMEPDIFYILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGILQS
Sbjct: 1   MVNMEPDIFYILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGILQS 60

Query: 61  YEKEERFIGPTKKYYRISIAKSYVVTLTPDMFWFRGFELKEPKLEDFKIELSKLNKEPTG 120
           YEKEERFIGPTKKYYRISIAKSYVVTLTPDMFWFRGFELKEPKLEDFKIELSKLNKEPTG
Sbjct: 61  YEKEERFIGPTKKYYRISIAKSYVVTLTPDMFWFRGFELKEPKLEDFKIELSKLNKEPTG 120

Query: 121 LINLISEFLKANRELEKILEAFVSLEAYRNELVKRIKEEYLREIGDMTQLAILHYVLLNG 180
           LINLISEFLKANRELEKILEAFVSLEAYRNELVKRIKEEYLREIGDMTQLAILHYVLLNG
Sbjct: 121 LINLISEFLKANRELEKILEAFVSLEAYRNELVKRIKEEYLREIGDMTQLAILHYVLLNG 180

Query: 181 EATVEELSDRLNMKEREVREKIMEMARFVPIKLINNEKVLIDEDVMKGDWNAQEDKGSGE 240
           EATVEELSDRLNMKEREVREKIMEMARFVPIKLINNEKVLIDEDVMKGDWNAQEDKGSGE
Sbjct: 181 EATVEELSDRLNMKEREVREKIMEMARFVPIKLINNEKVLIDEDVMKGDWNAQEDKGSGE 240


>pir||B71240 hypothetical protein PH0180 - Pyrococcus horikoshii
           >gi|3256566|dbj|BAA29249.1| (AP000001) 241aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 241
           
 Score =  429 bits (1092), Expect = e-119
 Identities = 209/241 (86%), Positives = 233/241 (95%), Gaps = 1/241 (0%)

Query: 1   MVNMEPDIFYILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGILQS 60
           MV MEPDIFYILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGIL+S
Sbjct: 1   MVKMEPDIFYILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGILES 60

Query: 61  YEKEERFIGPTKKYYRISIAKSYVVTLTPDMFWFRGFELKEPKLEDFKIELSKLNKEPTG 120
           YEKEERFIGPTKKYY+IS+AKSYVVTLTPDMFWF+GFEL EPKLED ++ELSKL+K P G
Sbjct: 61  YEKEERFIGPTKKYYKISVAKSYVVTLTPDMFWFKGFELGEPKLEDVRVELSKLDKSPEG 120

Query: 121 LINLISEFLKANRELEKILEAFVSLEAYRNELVKRIKEEYLREIGDMTQLAILHYVLLNG 180
           L NL+SEFLKANRELEKIL+AF+SLEAYRNEL+K+IK+EYL++IGDMTQLAILHY+LLNG
Sbjct: 121 LNNLLSEFLKANRELEKILKAFISLEAYRNELIKKIKDEYLKKIGDMTQLAILHYILLNG 180

Query: 181 EATVEELSDRLNMKEREVREKIMEMARFVPIKLINNEKVLIDED-VMKGDWNAQEDKGSG 239
           EA+VEELSDRLN+KEREVREKI+EM RFVPIKLINNEKVLIDED ++KGDWNA+E++GSG
Sbjct: 181 EASVEELSDRLNLKEREVREKIIEMGRFVPIKLINNEKVLIDEDKILKGDWNAEENQGSG 240

Query: 240 E 240
           E
Sbjct: 241 E 241


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82298703
Number of Sequences: 2977
Number of extensions: 3144341
Number of successful extensions: 12018
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12015
Number of HSP's gapped (non-prelim): 2
length of query: 240
length of database: 189,106,746
effective HSP length: 58
effective length of query: 182
effective length of database: 154,394,500
effective search space: 28099799000
effective search space used: 28099799000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)