BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0109 (bchP) DE:BACTERIOCHLOROPHYLL SYNTHASE 43 KDA SUBUNIT
or GERANYLGERANYL HYDROGENASE
(393 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75205 bacteriochlorophyll synthase 43 kda chain or geranyl... 787 0.0
pir||C71240 hypothetical protein PH0181 - Pyrococcus horikoshii ... 732 0.0
gi|11498075 bacteriochlorophyll synthase, 43 kDa subunit (chlP-1... 254 1e-66
pir||H69096 bacteriochlorophyll synthase 43 kDa subunit - Methan... 243 2e-63
sp|Q57952|Y532_METJA HYPOTHETICAL PROTEIN MJ0532 PRECURSOR >gi|2... 235 9e-61
pir||A69135 bacteriochlorophyll synthase 43 kDa subunit - Methan... 231 1e-59
emb|CAC11656.1| (AL445064) geranylgeranyl reductase related prot... 205 8e-52
pir||F70311 conserved hypothetical protein aq_121 - Aquifex aeol... 156 3e-37
sp|Q58915|YF20_METJA HYPOTHETICAL PROTEIN MJ1520 >gi|2128915|pir... 155 8e-37
pir||D72584 hypothetical protein APE1952 - Aeropyrum pernix (str... 153 2e-36
pir||A71143 hypothetical protein PH0356 - Pyrococcus horikoshii ... 138 9e-32
pir||H69196 conserved hypothetical protein MTH725 - Methanobacte... 133 3e-30
pir||F75009 geranylgeranyl oxidoreductase related PAB1059 - Pyro... 127 2e-28
emb|CAC12613.1| (AL445067) geranylgeranyl reductase related prot... 120 3e-26
gi|11499227 bacteriochlorophyll synthase, 43 kDa subunit (chlP-3... 119 5e-26
sp|P26172|BCHP_RHOCA GERANYLGERANYL HYDROGENASE >gi|79448|pir||S... 115 7e-25
pir||T50739 geranylgeranyl-bacteriochlorophyll reductase (EC 1.3... 114 2e-24
emb|CAA07683.1| (AJ007789) geranylgeranyl reductase [Nicotiana t... 114 2e-24
gb|AAG15228.1|AF288462_8 (AF288462) BchP [Chloroflexus aurantiacus] 112 6e-24
pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice... 108 1e-22
pir||T50913 geranylgeranyl bacteriochlorophyll reductase [import... 107 3e-22
gb|AAD28640.1|AAD28640 (AF068686) geranylgeranyl hydrogenase [Gl... 104 1e-21
gb|AAG19007.1| (AE005000) Vng0468c [Halobacterium sp. NRC-1] 100 3e-20
emb|CAA74372.1| (Y14044) geranylgeranyl reductase [Arabidopsis t... 100 3e-20
gb|AAF15919.1|AC011765_15 (AC011765) geranylgeranyl reductase; 4... 100 3e-20
sp|Q55087|CHLP_SYNY3 GERANYLGERANYL HYDROGENASE >gi|2126523|pir|... 97 4e-19
pir||B70310 conserved hypothetical protein aq_104 - Aquifex aeol... 95 1e-18
gb|AAG20671.1| (AE005136) geranylgeranyl hydrogenase; BchP [Halo... 95 1e-18
gb|AAK42505.1| Geranylgeranyl hydrogenase, putative [Sulfolobus ... 94 2e-18
pir||T34627 probable electron transfer oxidoreductase - Streptom... 92 8e-18
sp|P54805|YNH2_METBA HYPOTHETICAL 19.9 KDA PROTEIN IN NIFH2 5'RE... 91 2e-17
gi|11498628 bacteriochlorophyll synthase, 43 kDa subunit (chlP-2... 91 2e-17
sp|P77337|YDIS_ECOLI PROBABLE ELECTRON TRANSFER FLAVOPROTEIN-QUI... 88 2e-16
dbj|BAA90346.1| (AP001080) Similar to geranylgeranyl hydrogenase... 88 2e-16
pir||D70549 hypothetical protein Rv0561c - Mycobacterium tubercu... 85 1e-15
gb|AAG18984.1| (AE004999) Vng0439c [Halobacterium sp. NRC-1] 81 2e-14
sp|P96800|YOR3_METBA HYPOTHETICAL 31.9 KDA PROTEIN IN HDRD 3'REG... 81 3e-14
emb|CAB95292.1| (AL359779) putative hydrogenase [Streptomyces co... 80 3e-14
sp|P31575|FIXC_ECOLI FIXC PROTEIN >gi|7444931|pir||C64725 fixC p... 80 4e-14
pir||S40564 hypothetical protein - Escherichia coli >gi|216468|d... 79 7e-14
pir||S75024 hypothetical protein slr1998 - Synechocystis sp. (st... 77 3e-13
gb|AAF05771.1|AF193857_1 (AF193857) putative CMF receptor CMFR1 ... 76 9e-13
gb|AAK42929.1| FIXC protein homolog (fixC) [Sulfolobus solfatari... 75 2e-12
dbj|BAA18339.1| (D90913) 391 aa (43 kD) bacteriochlorophyll synt... 74 3e-12
>pir||A75205 bacteriochlorophyll synthase 43 kda chain or geranylgeranyl
hydrogenase PAB0109 - Pyrococcus abyssi (strain Orsay)
>gi|5457597|emb|CAB49088.1| (AJ248283)
BACTERIOCHLOROPHYLL SYNTHASE 43 KDA SUBUNIT or
GERANYLGERANYL HYDROGENASE [Pyrococcus abyssi]
Length = 393
Score = 787 bits (2011), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD
Sbjct: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV
Sbjct: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
Query: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE
Sbjct: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
Query: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN
Sbjct: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
Query: 241 NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW 300
NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW
Sbjct: 241 NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW 300
Query: 301 IIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEK 360
IIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEK
Sbjct: 301 IIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEK 360
Query: 361 LAGGNYLEVVKALMKHPKVLMSRRRLEILKALL 393
LAGGNYLEVVKALMKHPKVLMSRRRLEILKALL
Sbjct: 361 LAGGNYLEVVKALMKHPKVLMSRRRLEILKALL 393
>pir||C71240 hypothetical protein PH0181 - Pyrococcus horikoshii
>gi|3256567|dbj|BAA29250.1| (AP000001) 393aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 393
Score = 732 bits (1868), Expect = 0.0
Identities = 357/393 (90%), Positives = 380/393 (95%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
M+YDVVVVGSGVAGP VAR+VAKAGFSVLLVDKK AIG PKQCAEG+TI FK+FDIPYD
Sbjct: 1 MRYDVVVVGSGVAGPIVARNVAKAGFSVLLVDKKPAIGAPKQCAEGLTINAFKQFDIPYD 60
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
KRFINREIYGAKIYSPSGYTAELRYK VSGVILERKVFDKMLAYYAAKAGAEVLARTEVV
Sbjct: 61 KRFINREIYGAKIYSPSGYTAELRYKEVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
Query: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
DVIRR GKIVGV+AKHEGEP+EIEAKVIVAADGVESTIARKAGI+TYAPPHEFDSGYEYE
Sbjct: 121 DVIRREGKIVGVKAKHEGEPMEIEAKVIVAADGVESTIARKAGIDTYAPPHEFDSGYEYE 180
Query: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
M+IEG+DPDLIHLFFGNEVAPRGYVW+FPKDEDRANVGIGI SD+ +TAKYYLDKWLKEN
Sbjct: 181 MIIEGFDPDLIHLFFGNEVAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN 240
Query: 241 NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW 300
NIP KILEVNVGL+PVGGFVKELVK+NVLVVGDAARQVNP+HGGGM EAMKA++IA+KW
Sbjct: 241 NIPRNKILEVNVGLIPVGGFVKELVKENVLVVGDAARQVNPIHGGGMAEAMKASTIASKW 300
Query: 301 IIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEK 360
IIKALEEENLELLKNY EEWW+TEGPRMEKLL+LR+AMEKLTDEDLDVFVQLVSGTDLEK
Sbjct: 301 IIKALEEENLELLKNYKEEWWKTEGPRMEKLLRLRRAMEKLTDEDLDVFVQLVSGTDLEK 360
Query: 361 LAGGNYLEVVKALMKHPKVLMSRRRLEILKALL 393
+AGGNY+EVVKALMKHPKVLMSRRRLEILKALL
Sbjct: 361 IAGGNYIEVVKALMKHPKVLMSRRRLEILKALL 393
>gi|11498075 bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
[Archaeoglobus fulgidus] >gi|7450113|pir||H69307
bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
homolog - Archaeoglobus fulgidus
>gi|2650164|gb|AAB90773.1| (AE001072)
bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
[Archaeoglobus fulgidus]
Length = 410
Score = 254 bits (642), Expect = 1e-66
Identities = 155/394 (39%), Positives = 231/394 (58%), Gaps = 15/394 (3%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
+ YDVVVVG+G AG A+ A+ G VLLV+K+ IGTP +CAEGI+ E ++F D
Sbjct: 23 LMYDVVVVGAGPAGSMAAKTAAEQGLKVLLVEKRQEIGTPVRCAEGISRESIEKF-FEVD 81
Query: 61 KRFINREIYGAKIYSPSG----YTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLAR 116
K++I E+ GAKIY+P+ + E+ V G +LERK+FD+ +A AAKAGAEV +
Sbjct: 82 KKWIAAEVTGAKIYAPNKTEIVMSEEMAGNEV-GYVLERKIFDRHVARLAAKAGAEVYVK 140
Query: 117 TEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSG 176
T +VD R++GK V V+ + GE E+E K+++ ADGVES I RKAGI +E +S
Sbjct: 141 TAMVDFERKDGK-VKVKLRRLGEDWEVETKILIGADGVESKIGRKAGIIKTLKLNEVESC 199
Query: 177 YEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQ-TAKYYLDK 235
+Y M D + + G E+AP GY WIFPK ANVGIG+ + TAK YLD
Sbjct: 200 AQYLMTGLDIDESYTYFYLGRELAPGGYAWIFPKGNGSANVGIGVLPKMAERTAKEYLDA 259
Query: 236 WLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAAS 295
++++ I KI+E G VPV G ++ V DN+++ GDAA +P+ GGG+ A+ A
Sbjct: 260 FIEKEGIE-GKIVEFVAGAVPVYGEIETAVADNIMLAGDAAYHADPITGGGIANALSAGY 318
Query: 296 IAAKWIIKALEEENL--ELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLV 353
A K +A+++ + + L+ Y E W G ++ + KL+ + D L+ +
Sbjct: 319 YAGKVAAEAVQKNDFSADFLRRYDELWKNDFGKKLRRNKKLQLKFIDMDDALLNKLAGAI 378
Query: 354 SGTDLEKLAGGNYLEVVKALMK-HPKVLMSRRRL 386
+G +L ++ + +VK L+K HPK+L + L
Sbjct: 379 AGKNLREM---SVAAIVKELLKAHPKLLWDLKDL 409
>pir||H69096 bacteriochlorophyll synthase 43 kDa subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622850|gb|AAB86190.1| (AE000928)
bacteriochlorophyll synthase 43 kDa subunit
[Methanobacterium thermoautotrophicum]
Length = 381
Score = 243 bits (614), Expect = 2e-63
Identities = 143/371 (38%), Positives = 209/371 (55%), Gaps = 7/371 (1%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
+VV+G VAG T A A+ G SVLL+++ IGTP QCA G++ FK + F
Sbjct: 1 MVVIGGRVAGSTAAYHAARLGLSVLLLERNPEIGTPVQCAGGVSDSFFKSTGLKPLPEFT 60
Query: 65 NREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDVIR 124
I A + P G V G ILERK DK LA AA+AGA+VL + D+I
Sbjct: 61 CTRIRAAAVNGPLGARIVTENPVVRGYILERKSLDKYLALRAAEAGADVLTMSIAGDLIF 120
Query: 125 RNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYEMLIE 184
R G + GV + E+E +++AADGV+S+IARKAG+ T P + S +YE+
Sbjct: 121 REGSVSGVVFRGPDGVQEVECGMVIAADGVQSSIARKAGLETGFRPADLCSCVQYEVAGV 180
Query: 185 GYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGI--ASDHPQTAKYYLDKWLKENNI 242
DP+ + +FG+ AP GY+W+FPK E RANVG+GI S + YL+++++E
Sbjct: 181 DVDPETMEFYFGSRFAPSGYLWVFPKGEGRANVGLGIRRKSCSERGPLSYLNRFMEERGF 240
Query: 243 PMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWII 302
K +E N G VPV G ++ D +LVVGDAA QV+P+ GGG+ A + A IA +
Sbjct: 241 ---KRIEFNAGAVPVCGPIERTFTDGLLVVGDAAGQVDPLTGGGIHLAAECAKIAGEVAA 297
Query: 303 KALEEENLE--LLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEK 360
+A+E ++ L Y W + G +E+ LK RK ++ L DE+LD ++ + G DL
Sbjct: 298 EAIESGRVDGRFLSRYEMRWRKKIGKNLERSLKFRKILDGLGDEELDALLRSLEGKDLSS 357
Query: 361 LAGGNYLEVVK 371
++ + L ++K
Sbjct: 358 ISKISLLRILK 368
>sp|Q57952|Y532_METJA HYPOTHETICAL PROTEIN MJ0532 PRECURSOR >gi|2128016|pir||D64366
hypothetical protein homolog MJ0532 - Methanococcus
jannaschii >gi|1591235|gb|AAB98523.1| (U67502)
bacteriochlorophyll synthase 43 kDa subunit (chlP)
[Methanococcus jannaschii]
Length = 391
Score = 235 bits (592), Expect = 9e-61
Identities = 147/388 (37%), Positives = 211/388 (53%), Gaps = 21/388 (5%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKR 62
YDVVVVG+G G + AK G LL++K IG P +CAE I +EF + +
Sbjct: 8 YDVVVVGAGPGGSMASYASAKNGAKTLLIEKSQEIGEPVRCAEAIPS--IEEFGLKPEPE 65
Query: 63 FINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDV 122
F+ I G ++SPSG + G ++ERK+FDK LA AAKAGA+V +T +
Sbjct: 66 FVRNIIKGGILFSPSGKKVTVTQDKAQGYVVERKIFDKYLAIRAAKAGAKVAVKTTAIG- 124
Query: 123 IRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYEML 182
+ R+G V + GE I+ KV++AADGVES IA AG+ P E S EYEM
Sbjct: 125 LERDGDYWNVIVEFLGEEYVIKTKVVIAADGVESNIAEYAGLKAKKKPLEICSCAEYEMT 184
Query: 183 -IEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKY---YLDKWLK 238
+E D +++ +FGNEVAP GYVWIFPK E ANVG+G+ + +Y +++ L
Sbjct: 185 NVELLDKNMMEFYFGNEVAPGGYVWIFPKGE-TANVGLGVRDKKKKAIEYLEEFIENGLA 243
Query: 239 ENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAA 298
++ + +E VG PV G +++ D +LVVGDAA Q++P+ GGG+ AM IA
Sbjct: 244 KDRLKDATPIEFKVGGAPVSGPIEKTYTDGLLVVGDAAGQISPLTGGGIYLAMDCGLIAG 303
Query: 299 KWIIKA--LEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQL---- 352
+ KA L + + E LK Y W + LK RK +EK++D++LD +
Sbjct: 304 EVASKAIKLNDWSEETLKEYERRWKEKHYEYLMSHLKYRKILEKMSDDELDALAEALGES 363
Query: 353 VSGTDLEKLAGGNYLEVVKALMKHPKVL 380
+ G DL+K V + + K P +L
Sbjct: 364 LDGIDLKKF-------VKRIITKKPSLL 384
>pir||A69135 bacteriochlorophyll synthase 43 kDa subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621328|gb|AAB84783.1| (AE000813)
bacteriochlorophyll synthase 43 kDa subunit
[Methanobacterium thermoautotrophicum]
Length = 397
Score = 231 bits (582), Expect = 1e-59
Identities = 146/393 (37%), Positives = 226/393 (57%), Gaps = 15/393 (3%)
Query: 4 DVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRF 63
DV+V+G+G AG T A+ A G VLL+DKK+ IG PK+CAEG++I + I + R+
Sbjct: 9 DVLVIGAGPAGSTAAKHAALGGADVLLIDKKSEIGAPKRCAEGVSIGGLESLGIEPNPRW 68
Query: 64 INREIYGAKIYSPSGYTAELRYKHV----SGVILERKVFDKMLAYYAAKAGAEVLARTEV 119
I +++ G ++ SP+G L V +G ILERKVFDK +A AA+AG+ ++ +T
Sbjct: 69 ITKKLDGVRMVSPNGTDVWLTSDKVELPEAGYILERKVFDKFMAMDAARAGSRIMVKTIA 128
Query: 120 VDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEY 179
+ R + + V A+ GE EI+A++++AADG ES +AR AG+NT P + +S ++
Sbjct: 129 TGMERTDDGYL-VSAECMGEKFEIKARIVIAADGPESRVARWAGLNTATRPKDMESAAQF 187
Query: 180 EML-IEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLK 238
EM+ +E D + I +FG+ VAP GY P+ +D ANVG+G+ S + Y
Sbjct: 188 EMVGVEMEDNNCIEFYFGS-VAPGGYALDIPEGDDIANVGLGVLSTETDKSAYEHLLEFV 246
Query: 239 ENNIPMRKI--LEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASI 296
E+ R +E+N+G PVGG K+LV D+++VVGDAA QVNP+ GGG+ MK +
Sbjct: 247 ESCPATRNAQPVELNIGGDPVGGMPKKLVADSLMVVGDAAGQVNPLTGGGIISGMKGGML 306
Query: 297 AAKWIIKALEEENL--ELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVS 354
A + A+ E ++ L Y G + K LK+++ + L+D +LD +
Sbjct: 307 AGQVAAAAVSEGDVTARRLGEYERLCREEIGDEISKYLKVKEYLLTLSDSELDSIAEAFQ 366
Query: 355 GTDLEKLAGGNYLEVVKALMK-HPKVLMSRRRL 386
+ EK+ + E+VK L+K PK L+ +L
Sbjct: 367 DVEFEKV---STTELVKKLIKVSPKALLKLGKL 396
>emb|CAC11656.1| (AL445064) geranylgeranyl reductase related protein [Thermoplasma
acidophilum]
Length = 389
Score = 205 bits (516), Expect = 8e-52
Identities = 135/397 (34%), Positives = 211/397 (53%), Gaps = 42/397 (10%)
Query: 7 VVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFINR 66
+VG G G T AR AK G L+++K+ IG+P +C EG++ + E DI D+ FI
Sbjct: 1 MVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIAN 60
Query: 67 EIYGAKIYSPSGYTAELRYKHVSG----VILERKVFDKMLAYYAAKAGAEVLARTEVVDV 122
E+ GA+IY PS + +G +LER FDK LA AAKAGA+V ++ + V
Sbjct: 61 EVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGV 120
Query: 123 IRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGI-NTYAPPHEFDSGYEYEM 181
I+ NGK+ G + +H E +++ AK+++AADG ES R AG+ + ++ S +Y M
Sbjct: 121 IKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRM 180
Query: 182 LIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASD---HPQTAKYYLDKWLK 238
+ DPD + G+ +AP GY+W+FPK E ANVGIG + + + K YLD+++
Sbjct: 181 INVDVDPDYTDFYLGS-IAPAGYIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFI- 238
Query: 239 ENNIPMRKILEVNV--GLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASI 296
EN+ ++K ++ + G V V + +++VGDAAR ++P+ GGG+ A+ +
Sbjct: 239 ENHPGLKKGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMY 298
Query: 297 AAKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLR------------KAMEKLTDE 344
AA+ +A+E +YS + + + EKL+K R + + L+D+
Sbjct: 299 AAQVTKEAIES------NDYSPQMMQ----KYEKLIKERFERKHLRNWVAKEKLAMLSDD 348
Query: 345 DLDVFVQLVSGTDLE--------KLAGGNYLEVVKAL 373
LD V +VS L K Y EVVK L
Sbjct: 349 TLDKLVDIVSEQVLTTISVEAILKAIAEKYPEVVKEL 385
>pir||F70311 conserved hypothetical protein aq_121 - Aquifex aeolicus
>gi|2982862|gb|AAC06483.1| (AE000674) hypothetical
protein [Aquifex aeolicus]
Length = 342
Score = 156 bits (391), Expect = 3e-37
Identities = 113/345 (32%), Positives = 180/345 (51%), Gaps = 23/345 (6%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
MKYDV +VG+G G T A +AK G VLL+D + +G P QCAE + +++ EF +
Sbjct: 1 MKYDVAIVGAGPGGSTCAYVLAKKGVRVLLIDSRKEVGYPVQCAEFVPVQLSYEFPEFFP 60
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
+ I +++ Y+P G E+ + G IL R+ +DK +A A K GA + +T+ +
Sbjct: 61 EETIAQKVKDMVHYTPWG---EIVSMYSEGFILHREKWDKGIAKLAEKEGAHLRTKTKFI 117
Query: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
GK + ++ ++ E +++A ++V ADG S +A+ G +T EF +Y
Sbjct: 118 GF---EGKYLILKDLNKREVFKVKADIVVGADGARSLVAKLTGEHT----KEFLITAQYT 170
Query: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKE- 239
+ ++ DL L F + P GY WIFPK E ANVG+G+ + L+K++KE
Sbjct: 171 LKLKKPLNDL--LIFFRDYIPGGYGWIFPKQE-LANVGVGVDLSYGVNVVEVLNKFVKEV 227
Query: 240 -NNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAA 298
+ + I G +P G +K + NVL+VGDA +P+ GGG+ A+ SIAA
Sbjct: 228 KDFVEPEPIYGRTGGFIP-GEGIKNPFRGNVLLVGDAGGFCHPITGGGIANAVITGSIAA 286
Query: 299 KWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTD 343
+ I++ EE + EE T GP + + + RK + K D
Sbjct: 287 RAILEGDLEE-------FEEEALDTLGPSINRAAQKRKKLMKEWD 324
>sp|Q58915|YF20_METJA HYPOTHETICAL PROTEIN MJ1520 >gi|2128915|pir||G64489 hypothetical
protein MJ1520 - Methanococcus jannaschii
>gi|1592151|gb|AAB99539.1| (U67593) bacteriochlorophyll
synthase 43 kDa subunit (chlP) [Methanococcus
jannaschii]
Length = 387
Score = 155 bits (388), Expect = 8e-37
Identities = 115/359 (32%), Positives = 184/359 (51%), Gaps = 17/359 (4%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKR 62
YDVV++G G G + + K G VL+V++ +IG P QCA I+ KE P K
Sbjct: 6 YDVVIIGGGPVG-CITGEYIKNG-RVLIVEEHQSIGVPLQCAGLISKNGVKELGNP--KG 61
Query: 63 FINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDV 122
+N+ + GA IYS + ++ + + I ERKV DK +A AAK +L ++
Sbjct: 62 VVNK-VRGAYIYSKNSMV-KIGNEGIRAYIFERKVMDKDIAIRAAKKCDFLLKAYGKIEK 119
Query: 123 IRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYEML 182
+ K V H GE + + K+IV ADG ++ +K G+ E S ++EM+
Sbjct: 120 DKNGYK---VEITHLGEKITLNPKIIVGADGAKTITGKKLGL-VNNKNREILSSCQFEMV 175
Query: 183 IEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVG-IGIASDHPQTAKYYLDKWLKENN 241
D D +++F + + R + WI P +DR VG I + + + ++ + + +
Sbjct: 176 NAEVDDDFVYIFLDRKYSERFFTWIIPMGKDRVRVGLIDRGNCYNKLIRFINENKIAKEI 235
Query: 242 IPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWI 301
+ I E + G +P+G ++ + KDNVL+VGDAA V P+ GGG+ IA + I
Sbjct: 236 LKNATITEFSTGSLPIG-YLDKTFKDNVLLVGDAACHVKPLSGGGLYFGAMGGKIAGEVI 294
Query: 302 IKALEE--ENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDL 358
K L E ENLEL Y + W T G ++ L++RK KL ++ LD ++ +S +DL
Sbjct: 295 SKYLNEDIENLEL---YDKRWKETFGSEIKNGLRVRKLFLKLGNDTLDKIIEKLSKSDL 350
>pir||D72584 hypothetical protein APE1952 - Aeropyrum pernix (strain K1)
>gi|5105648|dbj|BAA80961.1| (AP000062) 461aa long
hypothetical protein [Aeropyrum pernix]
Length = 461
Score = 153 bits (384), Expect = 2e-36
Identities = 121/367 (32%), Positives = 182/367 (48%), Gaps = 25/367 (6%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVL---LVDKKAAIGTPKQCAEGITIEVFKEFDIP 58
KYDVV+VG G AG ++A + G V + D G P C + I F E +P
Sbjct: 4 KYDVVIVGLGPAGSSLAYLLKDTGLKVAGLDIADFNRVWGKP--CGDAIGKGHFLETGLP 61
Query: 59 YDKRFINREIYGA-KIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLART 117
K ++ A IYSPS + G +++R + L A K+G +V +T
Sbjct: 62 LPKGEAMMQVVNAVDIYSPSEEVKIRLSEPEGGFMIDRNKYGLQLLEEAQKSGVDVYLKT 121
Query: 118 EVVDVIRRNGKIVGVRAKHEGEPLEIE----AKVIVAADGVESTIARKAGIN--TYAPPH 171
+ I NG++VGV AK GE ++ +K+IV A G I RK + P
Sbjct: 122 HALSPIIENGRLVGVYAKRHGEDGDVNVKFYSKIIVDATGSGGAIKRKLPSSWPVVEPLK 181
Query: 172 EFDSGYEYEMLIE-GYD---PDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASD--- 224
DS Y ++E YD PD+I ++ ++AP GY W+FPK AN+GIG+
Sbjct: 182 PTDSAVAYRKIVELDYDIEEPDVIRIYINADIAPGGYWWLFPKGRRIANIGIGVQRGRGY 241
Query: 225 -HPQTA-KYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPV 282
HP+ + YLDK + + + ++L L+P +V DN + +GD A VNPV
Sbjct: 242 PHPRHLYEKYLDK--RPDTGRVVRLLNEAGALLPTRRPANTIVWDNFVSIGDNAYTVNPV 299
Query: 283 HGGGMKEAMKAASIAAKWIIKALE--EENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEK 340
HGGGM AM AA AA+ I KA E + ++E L + + + R+ G + L LR ++
Sbjct: 300 HGGGMGYAMTAAMYAARGIEKAFEKGDYSVETLWDINLGYMRSTGAKQAGLDILRIYLQT 359
Query: 341 LTDEDLD 347
LT+E+++
Sbjct: 360 LTNEEVE 366
>pir||A71143 hypothetical protein PH0356 - Pyrococcus horikoshii
>gi|3256747|dbj|BAA29430.1| (AP000002) 370aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 370
Score = 138 bits (345), Expect = 9e-32
Identities = 119/400 (29%), Positives = 199/400 (49%), Gaps = 37/400 (9%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
M+YDV+++G G G +A +A +V +++KK A G K C + E ++ +P +
Sbjct: 1 MRYDVLIIGGGPVGNYLASLLA-GKVNVGVIEKKGAFGG-KACTGIVGAENYESLGLP-E 57
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
K +N + + E+ +++RKV ++ LA A + GAE T +
Sbjct: 58 KAILNA--FNGAFFISREKVFEIHRSLPQAYLIDRKVLERELAKRAMRKGAEYYLSTNFL 115
Query: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
+NGK + +H LEIEAK V ADGV S++A++ T E G+E E
Sbjct: 116 GF--KNGKAI---LQHLDSRLEIEAKYYVGADGVNSSVAKEIQARTEG---EVLKGWEIE 167
Query: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
+L + D + ++ + P + W+ P +E+ A VG D L K+LK
Sbjct: 168 VL-GNFKRDHVEVWVNKNINPEFFFWVAPINEEEARVGTFGEIDS-------LAKFLKIR 219
Query: 241 NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW 300
+ K +E+ G V + G+ K VK NV +VGDAA Q+ P GG + + AK
Sbjct: 220 RLNPFKTVEIKSGAV-ILGWRKPWVKGNVALVGDAALQIKPTTAGG----IVFGAYCAKS 274
Query: 301 IIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEK 360
+ KA+ +NLE+ + E W E ++ LK+RK + LT E ++ +++S ++ K
Sbjct: 275 LAKAILNDNLEIYER--ECSWVRE--QVSFGLKIRKVFKNLTQEKIEEIFEVLSSEEVRK 330
Query: 361 LA-----GGNYLEVVKALMKHPKVLMSRRRLE--ILKALL 393
+ ++++ VKAL+K+P+VL R+ IL+ALL
Sbjct: 331 IIVERADFDDHVKTVKALLKNPRVLAKLIRISPIILRALL 370
>pir||H69196 conserved hypothetical protein MTH725 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621814|gb|AAB85230.1| (AE000852) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 375
Score = 133 bits (332), Expect = 3e-30
Identities = 106/351 (30%), Positives = 173/351 (49%), Gaps = 28/351 (7%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKR 62
YDV+++G+G AG T+AR A GF V L ++K IG P QCA G+ E ++ D+
Sbjct: 4 YDVLIMGAGPAGSTLARLTATKGFRVGLFERKKIIGLPLQCA-GLVSHRIMEVNVLPDE- 61
Query: 63 FINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDV 122
FI + GA ++SPSG + +++R +D+ LA A +AGAE+ T V D
Sbjct: 62 FILNSVRGAVLHSPSGIKLRVSKDRPEAHVIDRTAYDQHLAELAMEAGAELTKGTAVRDF 121
Query: 123 IRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYEML 182
+ G + + G+ E+ A V+V A G + AP Y
Sbjct: 122 NEKTGHV-----RVNGD--ELSADVLVDARG-----------QSAAPSRYPARQYLVRFR 163
Query: 183 IEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKENNI 242
D D + L + ++P G++W P DE A VG+ Q K +L ++ + +
Sbjct: 164 DSEMDTDFVDLKVDSRLSP-GFMWRIPIDEQTARVGV---FGPQQNLKEFLKGFISDLSS 219
Query: 243 PMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWII 302
+ILE + G +P LV+ +++GDAA QV P GGG+ A +AA +AA+ I
Sbjct: 220 DF-EILESHHGFIPRPDLDLRLVRGRCILLGDAAGQVKPTTGGGIVLASRAAGVAAEVIQ 278
Query: 303 KALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLD-VFVQL 352
LE + LK Y + + M+ +++++ L+D+DLD +F+++
Sbjct: 279 GVLEGD--ADLKEYEDACRKIHMSEMKNQMRVQRTFRLLSDKDLDHIFLKM 327
>pir||F75009 geranylgeranyl oxidoreductase related PAB1059 - Pyrococcus abyssi
(strain Orsay) >gi|5459030|emb|CAB50516.1| (AJ248288)
geranylgeranyl hydrogenase related [Pyrococcus abyssi]
Length = 370
Score = 127 bits (317), Expect = 2e-28
Identities = 117/401 (29%), Positives = 195/401 (48%), Gaps = 39/401 (9%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
M YD +++G G G +A +A SV +V++K A G K C I E ++ +P D
Sbjct: 1 MNYDALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGG-KACTGIIGAENYESLGLP-D 57
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
K +N + + E+ + +++RKV ++ LA A K GA+ T V
Sbjct: 58 KAILNA--FKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFV 115
Query: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
++GK + +H EI+AK V ADGV S +A++ G T E G+E E
Sbjct: 116 GF--KDGKAI---LQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRG---EVLRGWELE 167
Query: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
+L + + + ++ ++ P + W+ P +E+ A IG D AK+ LK
Sbjct: 168 VL-GNFRREWVEVWVNKDINPEFFFWVAPINEEEAR--IGTFGDVESLAKF-----LKVR 219
Query: 241 NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW 300
I +LE+ G V V G+ VKDNV +VGDAA + P GG + S A+
Sbjct: 220 RINPSNVLEIKSGAV-VLGWRSPWVKDNVALVGDAALHIKPTTAGG----IVFGSYCARA 274
Query: 301 IIKALEEENL-ELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTD-- 357
+ KA+ NL E KN S W E +++ L++RK + LT ++++ +++ D
Sbjct: 275 LAKAILNGNLAEYEKNCS---WVKE--QVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDAR 329
Query: 358 ---LEKLAGGNYLEVVKALMKHPKVLMSRRRLE--ILKALL 393
+EK ++++ KAL+++P++L R+ IL+ LL
Sbjct: 330 KLIIEKADFDDHVKTAKALLRNPRLLARLIRIAPIILRTLL 370
>emb|CAC12613.1| (AL445067) geranylgeranyl reductase related protein [Thermoplasma
acidophilum]
Length = 375
Score = 120 bits (298), Expect = 3e-26
Identities = 92/387 (23%), Positives = 183/387 (46%), Gaps = 25/387 (6%)
Query: 4 DVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRF 63
DV+V+G+G +G A +AKAGF+V ++++ +G P +C ++ V K +
Sbjct: 3 DVIVIGAGPSGSFAAYRLAKAGFTVDILEEHREVGKPVECTGLVSQRVLKY----VRTKS 58
Query: 64 INREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDVI 123
I + GA I+ P+G + + K ++L R FDK +A A AG+ + + V
Sbjct: 59 IAGTVRGANIFFPNGKSVHIE-KDDPTIVLFRDAFDKDVAAMAIGAGSGIRINARALSVT 117
Query: 124 RRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHE-FDSGYEYEML 182
+ + VR + G E +A++++ ADG+ S + R + Y + S +Y+M
Sbjct: 118 EHDDHVT-VRYRENGSIKEEDARIVIGADGINSVVRR----DVYGMRQKHVVSTLQYDMA 172
Query: 183 IEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKENNI 242
D D ++++ G++ + W P D VG G + +A+ Y+D
Sbjct: 173 SGIEDEDSVNVYLGSQYTHGFFGWAVP-GGDIVRVGTG---SYKASARPYMDN--LSRRF 226
Query: 243 PMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWII 302
+ L + +P+ + L ++VGDA V P+ GGG+ + ++ +AA +++
Sbjct: 227 GDNRTLGITGAGIPI-RMAERLSSRRTVLVGDAGGIVKPLSGGGIYTGIFSSDVAANYVV 285
Query: 303 KALEEENLEL-LKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEKL 361
+ALE ++ E L+ Y E T G ++K +++ +++D + ++S + +
Sbjct: 286 EALESDSSEASLRKYDREIRNTIGKELKKDAMIQRIYSRISDRSFNRIYSMISNEKIIDV 345
Query: 362 AGGN------YLEVVKALMKHPKVLMS 382
+ ++K L+++P +L S
Sbjct: 346 INRSGDIDYPSTVIIKVLLRNPGILYS 372
>gi|11499227 bacteriochlorophyll synthase, 43 kDa subunit (chlP-3)
[Archaeoglobus fulgidus] >gi|7450121|pir||D69454
bacteriochlorophyll synthase, 43 kDa subunit (chlP-3)
homolog - Archaeoglobus fulgidus
>gi|2648912|gb|AAB89604.1| (AE000989)
bacteriochlorophyll synthase, 43 kDa subunit (chlP-3)
[Archaeoglobus fulgidus]
Length = 394
Score = 119 bits (296), Expect = 5e-26
Identities = 113/379 (29%), Positives = 179/379 (46%), Gaps = 45/379 (11%)
Query: 4 DVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGIT-----------IEVF 52
DVVV G G+AG R + K+ V+ +DK+ +G P +C E I ++ +
Sbjct: 17 DVVVAGVGIAGAFALRALDKS-LDVVGIDKREKLGYPVECGEIIPTKREMKALLPDLDDY 75
Query: 53 KEFDIPYDKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAE 112
FDIP KRF + P+G T E+ ++ ++ R D+M+ A ++ +
Sbjct: 76 SLFDIP--KRFESNLTKEVHFVLPNGKTFEIDFEFH---VVRR---DEMIQTIAEESSHK 127
Query: 113 VLARTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHE 172
+L + R+GKIV EGE + A+V VA+DG S IAR G+ P E
Sbjct: 128 LLLNKRIKAF--RDGKIV----LEEGE---VGAEVYVASDGPNSKIARSLGM----PKPE 174
Query: 173 FDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHP---QTA 229
+Y M + D+++++ G +++P Y WI PK + ANVGIG ++ T
Sbjct: 175 LSPAKQYVMKGVECNEDVVYMYIGRKISPGAYAWIIPKGKGVANVGIGFRPEYASRGDTI 234
Query: 230 KYYLDKWLKE--NNIPMRKILEV--NVG-LVPVGGFVKELVKDNVLVVGDAARQVNPVHG 284
LD +++E + P K EV ++G +VP+ + VK NVL GDAA V G
Sbjct: 235 VKALDHFVREYPYSSPFLKDAEVVSSIGAVVPIDRPFESAVKGNVLFAGDAASMVISHVG 294
Query: 285 GGMKEAMKAASIAAKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDE 344
GG+ AM A AA+ I EN L+ Y W + + +++ ++ +D
Sbjct: 295 GGIPTAMVAGDAAARVINGFFNGEN--DLQLYDSLWKKYLYKPLMNAYTIKRIWDRFSDS 352
Query: 345 DLDV--FVQLVSGTDLEKL 361
D V + L S D+ K+
Sbjct: 353 DDKVSRLLSLASNADMNKI 371
>sp|P26172|BCHP_RHOCA GERANYLGERANYL HYDROGENASE >gi|79448|pir||S17818
bacteriochlorophyll synthase 43K chain - Rhodobacter
capsulatus >gi|46117|emb|CAA77534.1| (Z11165) 391 aa (43
kD) bacteriochlorophyll synthase subunit [Rhodobacter
capsulatus]
Length = 391
Score = 115 bits (286), Expect = 7e-25
Identities = 98/370 (26%), Positives = 175/370 (46%), Gaps = 14/370 (3%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
MKYD VVG G AG T A D+A+AG V L+D+ I K C I + ++FDIP
Sbjct: 1 MKYDAFVVGGGPAGSTAAWDMARAGLKVALLDRAGRI---KPCGGAIPPRLIRDFDIP-- 55
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
+ +I A++ SP+G ++ ++ +++R+ +D+ L A KAGAE L T +
Sbjct: 56 DHLLVAKITSARMISPTGRFVDIPIENGFVGMVDREDYDEWLRERAGKAGAERLTGT-WL 114
Query: 121 DVIRRNGKIVGV-RAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEY 179
+ R +GK V V R K GE ++ E +V++ ADG S + + + +
Sbjct: 115 RIERDSGKTVVVWRDKVTGEEMKAETRVVIGADGANSQVRNEVPATKIPLVFAYHEIIKA 174
Query: 180 EMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKE 239
+ YDP +++ ++P Y W+FP + IG+ ++ P + L++
Sbjct: 175 PTTVANYDPTRCDVYYDGRISPDFYGWVFPHGK---TASIGMGTELPDVSLKDCTTLLRQ 231
Query: 240 -NNIPMRKILEVNVGLVPVGGF-VKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIA 297
+ + + + +P+ V + KD V++ GDAA V P G G+ A A
Sbjct: 232 MSGLDKEETIRKEGAPIPLQPLDVWDNGKD-VVLSGDAAGVVAPSSGEGIYYAHAGGRYA 290
Query: 298 AKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTD 357
A+ + L+ LK + + G + K+L++ + +D+ + FV L D
Sbjct: 291 AEAAMAFLKSGKPADLKLARAGFMKEHG-TVFKVLRMMQDKYYHSDDRRERFVSLCHDVD 349
Query: 358 LEKLAGGNYL 367
++++ +Y+
Sbjct: 350 VQRMTFESYM 359
>pir||T50739 geranylgeranyl-bacteriochlorophyll reductase (EC 1.3.1.-) bchP
[imported] - Rhodobacter sphaeroides
>gi|4490583|emb|CAB38733.1| (AJ010302) geranylgeranyl
bacteriochlorophyll reductase [Rhodobacter sphaeroides]
>gi|6690715|gb|AAF24283.1| (AF195122) BchP [Rhodobacter
sphaeroides]
Length = 394
Score = 114 bits (283), Expect = 2e-24
Identities = 107/381 (28%), Positives = 173/381 (45%), Gaps = 33/381 (8%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
M YDV VVG G +G T A ++A+AG SV L+D+ I K C I + ++FDIP D
Sbjct: 1 MAYDVFVVGGGPSGATAADELARAGKSVALLDRAGRI---KPCGGAIPPRLIEDFDIP-D 56
Query: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
+ + R I A++ SP+G ++ + +++R+ FD+ L AAKAGAE L T +
Sbjct: 57 SQIVAR-IRTARMISPTGRKVDIPIEGGFVGMVDREHFDEWLRRRAAKAGAERLTGTFLR 115
Query: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
V R K GE E K+++ ADG +S +AR E G +
Sbjct: 116 VERDSFHTYVVWREKATGEEKRSETKLVIGADGAKSDVARA----------EVPGGDKIP 165
Query: 181 MLIE-------------GYDPDLIHLFFGNEVAPRGYVWIFPKDEDRA-NVGIGIASDHP 226
M+I YDP + + V+P Y WIFP E + +G GI
Sbjct: 166 MVIAYHEIIKPPTSSVIDYDPTRCDVIYDGRVSPDFYGWIFPHGETASVGMGTGILGFDL 225
Query: 227 QTAKYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGG 286
+ A L ++ + + + +P+ K +V++ GDAA V P G G
Sbjct: 226 KEATALL---RRQAGLDQCETIRKEGAPIPLQPLEKWDNGKDVVLAGDAAGVVAPSSGEG 282
Query: 287 MKEAMKAASIAAKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDL 346
+ A +AA+ + AL+ L+ + + + + + K+L+ + DE
Sbjct: 283 IYYAFVGGQVAARACLAALKSGRATDLQ-LARKMFMADHKTVFKVLRSMQDAYYRDDERR 341
Query: 347 DVFVQLVSGTDLEKLAGGNYL 367
+ FV L TD+++L +Y+
Sbjct: 342 ERFVSLCHDTDVQRLTFESYM 362
>emb|CAA07683.1| (AJ007789) geranylgeranyl reductase [Nicotiana tabacum]
Length = 464
Score = 114 bits (282), Expect = 2e-24
Identities = 104/379 (27%), Positives = 173/379 (45%), Gaps = 23/379 (6%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
V VVG G AG A +AK G L+++K + K C I + + EFD+P D I
Sbjct: 55 VAVVGGGPAGGAAAETLAKGGIETFLIERK--MDNCKPCGGAIPLCMVGEFDLPLD--II 110
Query: 65 NREIYGAKIYSPSGYTAELRY---KHVSGVILERKVFDKMLAYYAAKAGAEVLARTEV-V 120
+R++ K+ SPS ++ H ++ R+V D L AA+AGA VL + +
Sbjct: 111 DRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKM 170
Query: 121 DVIRR-NGKIV------GVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEF 173
D+ + N V + GE +E ++ ADG S +A+ Y F
Sbjct: 171 DMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAKSINAGDYEYAIAF 230
Query: 174 DSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYL 233
+ Y +L ++ G++V+P Y W+FPK D VG G + K+ L
Sbjct: 231 QERIKISDDKMKYYENLAEMYVGDDVSPDFYGWVFPKC-DHVAVGTGTVTHKADIKKFQL 289
Query: 234 DKWLK-ENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMK 292
L+ ++ I KI+ V +P + L +D V +VGDAA V G G+ A K
Sbjct: 290 ATRLRADSKITGGKIIRVEAHPIPEHPRPRRL-QDRVALVGDAAGYVTKCSGEGIYFAAK 348
Query: 293 AASIAAKWIIKALEEENLEL----LKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDV 348
+ + A+ I++ E + L+ Y E+W +T P + L L+K + ++ +
Sbjct: 349 SGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYR-SNPAREA 407
Query: 349 FVQLVSGTDLEKLAGGNYL 367
FV++ + ++K+ +YL
Sbjct: 408 FVEMCADEYVQKMTFDSYL 426
>gb|AAG15228.1|AF288462_8 (AF288462) BchP [Chloroflexus aurantiacus]
Length = 419
Score = 112 bits (278), Expect = 6e-24
Identities = 107/414 (25%), Positives = 178/414 (42%), Gaps = 60/414 (14%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
V++VG+ V G T A + G ++++K+ + K C + F+EFD+P I
Sbjct: 5 VLIVGASVGGATAAITLRSFGIETIMLEKE--LSKAKPCGGAVPPAAFREFDLPTS--LI 60
Query: 65 NREIYGAKIYSPSGYTAELRYKHVSGVI---------LERKVFDKMLAYYAAKAGAEVLA 115
+R++ I SPSG + V+G I + R+VFD L A + GA+++
Sbjct: 61 DRKVKQCLIVSPSGQETRVP---VAGTIPSDDDYVAMVRREVFDSFLRQRAQERGADLIH 117
Query: 116 RTEVVDVIRRNGKIVGVRAK--HEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEF 173
+ R G + R HEG + A V++ ADG S A+ G+ PH
Sbjct: 118 AQLTGLRVDRRGVVATYRTPSGHEGS---VWADVVIGADGAYSPTAKFLGL-----PHLP 169
Query: 174 DSGYEYEMLIEGYDP-----DLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQT 228
+ E + D + L+ G EV+P Y W FPK D VGIG H
Sbjct: 170 RAVAIQERIKLSPDKMARWEETADLYLGYEVSPDLYAWAFPK-RDHIAVGIGAGPRHSTA 228
Query: 229 AKYYLDKWLKENNIPMRKILEVNVGLVPVGG--FVKE-----------LVKDNVLVVGDA 275
AK L L+ +G GG ++E + D +++GDA
Sbjct: 229 AKQLLTN------------LKRRLGDALAGGQTILREAHALPMEPRPHMAFDRAMLIGDA 276
Query: 276 ARQVNPVHGGGMKEAMKAASIAAKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLR 335
A V G G+ AMK+ +AA+ + + L+ + L++Y WW+ G M + L+
Sbjct: 277 AGLVVHTSGEGIYWAMKSGQMAAQTLAEYLDAPSAANLRHYERRWWKQYG-TMYRFLRFL 335
Query: 336 KAMEKLTDEDLDVFVQLVSGTDLEKLAGGNYLEVVKALMKHPKVLMSRRRLEIL 389
+ + ++VF ++ D+++L +Y+ K + P + R EI+
Sbjct: 336 QMWGYGNERQMEVFTEMCRNYDVQRLTFDSYMH--KQMAPAPWLAQLRMTAEII 387
>pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice plant
>gi|3202030|gb|AAC19396.1| (AF069318) geranylgeranyl
hydrogenase [Mesembryanthemum crystallinum]
Length = 466
Score = 108 bits (267), Expect = 1e-22
Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 27/381 (7%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
V V+G G AG + A +AK G L+++K + K C I + + EFD+P D I
Sbjct: 57 VAVIGGGPAGGSAAETLAKNGIETFLIERK--LDNCKPCGGAIPLCMVGEFDLPLD--II 112
Query: 65 NREIYGAKIYSPSGYTAELRYK---HVSGVILERKVFDKMLAYYAAKAGAEVL----ART 117
+R + K+ SPS ++ H ++ R+V D+ L AA GA V+ +
Sbjct: 113 DRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDEYLRERAAGFGATVINGLFLKM 172
Query: 118 EVVDVIRRNGKI--VGVRAKH--EGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEF 173
++ + + K+ G AK GE +E ++ ADG S +A+ G Y F
Sbjct: 173 DLPEGKDGSYKLHYTGYDAKSGGAGERRMLEVDAVIGADGANSRVAKAIGAGDYEYAIAF 232
Query: 174 DSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYL 233
+ Y DL ++ G++V+P Y W+FPK D VG G + K+ L
Sbjct: 233 QERIKIPDAKMQYYEDLAEMYVGDDVSPDFYGWVFPKC-DHVAVGTGTVTHKSDIKKFQL 291
Query: 234 -DKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMK 292
+ + I KI+ V +P K V D V +VGDAA V G G+ A K
Sbjct: 292 ATRTRAMDKIQGGKIIRVEAHPIPEHPRPKR-VLDRVALVGDAAGYVTKCSGEGIYFAAK 350
Query: 293 AASIAAKWII------KALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDL 346
+ + A+ I+ K + +E+ L+ Y E+W + P + L L+K + ++
Sbjct: 351 SGRMCAEAIVEGSANGKRMVDES--DLRKYLEKWDKKYWPTYKVLDILQKVFYR-SNPAR 407
Query: 347 DVFVQLVSGTDLEKLAGGNYL 367
+ FV++ + ++K+ +YL
Sbjct: 408 EAFVEMCADEYVQKMTFDSYL 428
>pir||T50913 geranylgeranyl bacteriochlorophyll reductase [imported] -
Rubrivivax gelatinosus >gi|7416817|dbj|BAA94066.1|
(AB034704) geranylgeranyl bacteriochlorophyll reductase
[Rubrivivax gelatinosus]
Length = 400
Score = 107 bits (264), Expect = 3e-22
Identities = 96/380 (25%), Positives = 179/380 (46%), Gaps = 29/380 (7%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKR 62
+DVVVVG G AG T A ++A+ G SVLL+D+ I K C I ++F IP D+
Sbjct: 6 FDVVVVGGGPAGATAATEIARQGRSVLLLDRAGRI---KPCGGAIPPRAIRDFGIP-DEL 61
Query: 63 FINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDV 122
+ + + A++ SP+ ++ ++ +++R+ FD+ L A + GA + RT +
Sbjct: 62 IVAKALC-ARMISPTDVKVDIHIENGYVGLVDREQFDEWLRERARQCGA--VRRTGTFER 118
Query: 123 IRRNG---KIVGVR-----AKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFD 174
I R+ IV R + EG+ + A+ I+ ADG S +AR+ + HE +
Sbjct: 119 IDRDADGCAIVRYRPHEKGERGEGQEAAVRARAIIGADGARSEVARQ----QISCAHEVE 174
Query: 175 SGYEYEMLIEG-------YDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQ 227
+ Y +IE YDP +++ ++P Y W+FP + +VG G ++D
Sbjct: 175 YVFAYHEIIEAPEPGHPDYDPSRCDVYYRGTISPDFYGWVFPHGK-TMSVGTG-SADKGF 232
Query: 228 TAKYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGM 287
+ + K ++ + K + +P+ +V++ GDA+ V P G G+
Sbjct: 233 SLRNATAKLREDAGLANCKTIRREGAPIPLKPLRCWDNGRDVVLAGDASGVVAPASGEGI 292
Query: 288 KEAMKAASIAAKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLD 347
A+ AA+ +++ L + + L + R G R+ +L + + +D+ +
Sbjct: 293 YYALAGGRFAAEAVLEMLRTGDAKALAGARRNFMREHG-RVFWILGILQRFWYSSDKRRE 351
Query: 348 VFVQLVSGTDLEKLAGGNYL 367
FV + D+++L +Y+
Sbjct: 352 RFVSICKDKDVQQLTFDSYM 371
>gb|AAD28640.1|AAD28640 (AF068686) geranylgeranyl hydrogenase [Glycine max]
Length = 462
Score = 104 bits (258), Expect = 1e-21
Identities = 100/379 (26%), Positives = 171/379 (44%), Gaps = 23/379 (6%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
V VVG G AG A +AK G L+++K + K C I + + EFD+P D I
Sbjct: 53 VAVVGGGPAGGAAAETLAKGGVETFLIERK--MDNCKPCGGAIPLCMVGEFDLPLD--II 108
Query: 65 NREIYGAKIYSPSGYTAEL---RYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEV-V 120
+R + K+ SPS ++ H ++ R+V D L A + GA V+ + +
Sbjct: 109 DRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKEYGANVINGLFLKM 168
Query: 121 DVIR-RNGKIVGVRAKHE------GEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEF 173
D+ + +N V + ++ GE +E ++ ADG S +A+ Y F
Sbjct: 169 DIPKDKNSPYVLHYSSYDGKTNGAGEKRTLEVDAVIGADGANSRVAKSIDAGDYEYAIAF 228
Query: 174 DSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYL 233
+ Y +L ++ G++V+P Y W+FPK D VG G + K+ L
Sbjct: 229 QERVKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKC-DHVAVGTGTVTHKGDIKKFQL 287
Query: 234 -DKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMK 292
+ E+ I KI+ V +P + L+ V +VGDAA V G G+ A K
Sbjct: 288 ATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLL-GRVALVGDAAGYVTKCSGEGIYFAAK 346
Query: 293 AASIAAKWIIKALEEENLEL----LKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDV 348
+ + A+ I++ E + L+ Y E+W +T P + L L+K + ++ +
Sbjct: 347 SGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDILQKVFYR-SNPAREA 405
Query: 349 FVQLVSGTDLEKLAGGNYL 367
FV++ + ++K+ +YL
Sbjct: 406 FVEMCADEYVQKMTFDSYL 424
>gb|AAG19007.1| (AE005000) Vng0468c [Halobacterium sp. NRC-1]
Length = 410
Score = 100 bits (247), Expect = 3e-20
Identities = 99/390 (25%), Positives = 170/390 (43%), Gaps = 38/390 (9%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQ---CAEGITIEVFKEFDIP 58
K+DV+V G+G AG ARD+A+ G+ V++++ + P+Q G + F +P
Sbjct: 4 KHDVIVAGAGPAGAQCARDLAERGYDVVVLEAEPEDEFPRQSNKSTAGTFASMMGAFGVP 63
Query: 59 YDKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTE 118
D + + + SP Y + G +LE F + L + GAE
Sbjct: 64 DD--VVMQYTDDVVLESPHEYFVQ----DQPGAVLEFAEFKQWLVAAGEQQGAEYRFEAR 117
Query: 119 VVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYE 178
V + I G+IVGV K++G+ E+ +I+ A G + +A+K G+ ++ G E
Sbjct: 118 VNNPITEGGEIVGV--KYDGDE-EVYGDIIIDATGPAAPLAKKLGVTDLRRSNQ-AIGIE 173
Query: 179 YEML-----IEGYD--PDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIA--------S 223
+EM EGY D + L +++AP GY WIF D A VGI
Sbjct: 174 WEMENVAVDHEGYADLSDAMMLRLDHDLAPGGYSWIFHTGADTAKVGICYIQNESYQRFG 233
Query: 224 DHPQTAKYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKEL----VKDNVLVVGDAARQV 279
D ++ +LD W++ + P G G +L DN + +GD V
Sbjct: 234 DASKSIDDHLDYWMETD--PRLADATKLAGKQHRGSAHIQLPANFSTDNFMAIGDTVPTV 291
Query: 280 NPVHGGGMKEAMKAASIAA----KWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLR 335
+P+ G G+ + M++A AA + + + + + L Y + W + P L +
Sbjct: 292 DPLWGEGIHKCMESARAAAITADRCFMGDDRDTSADALSIYDDLWHKRVAPNARMRLTMT 351
Query: 336 KAMEKLTDEDLDVFVQLVSGTDLEKLAGGN 365
+ + ++E D + + D+ L+G N
Sbjct: 352 QLLYLASNERYDRLMSDLQTADVGTLSGAN 381
>emb|CAA74372.1| (Y14044) geranylgeranyl reductase [Arabidopsis thaliana]
Length = 472
Score = 100 bits (247), Expect = 3e-20
Identities = 98/387 (25%), Positives = 169/387 (43%), Gaps = 33/387 (8%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDK 61
K V V+G G AG A +A+ G +L+++K + K C I + + EF++P D
Sbjct: 60 KLRVAVIGGGPAGGAAAETLAQGGIETILIERK--MDNCKPCGGAIPLCMVGEFNLPLD- 116
Query: 62 RFINREIYGAKIYSPSGYTAELRY---KHVSGVILERKVFDKMLAYYAAKAGAEVLA--- 115
I+R + K+ SPS ++ +H ++ R+V D L A K+GA V+
Sbjct: 117 -IIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLF 175
Query: 116 ----------RTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGIN 165
+ +GK K + +E++A ++ ADG S +A+
Sbjct: 176 LKMDHPENWDSPYTLHYTEYDGKTGATGTK---KTMEVDA--VIGADGANSRVAKSIDAG 230
Query: 166 TYAPPHEFDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDH 225
Y F Y DL ++ G++V+P Y W+FPK D VG G +
Sbjct: 231 DYDYAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKC-DHVAVGTGTVTHK 289
Query: 226 PQTAKYYL-DKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHG 284
K+ L + ++ I KI+ V +P + L K V +VGDAA V G
Sbjct: 290 GDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSK-RVALVGDAAGYVTKCSG 348
Query: 285 GGMKEAMKAASIAAKWIIKALEEENLEL----LKNYSEEWWRTEGPRMEKLLKLRKAMEK 340
G+ A K+ + A+ I++ + + L+ Y E+W +T P L L+K +
Sbjct: 349 EGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYR 408
Query: 341 LTDEDLDVFVQLVSGTDLEKLAGGNYL 367
++ + FV++ + ++K+ +YL
Sbjct: 409 -SNPAREAFVEMCNDEYVQKMTFDSYL 434
>gb|AAF15919.1|AC011765_15 (AC011765) geranylgeranyl reductase; 47568-49165 [Arabidopsis
thaliana]
Length = 467
Score = 100 bits (247), Expect = 3e-20
Identities = 98/387 (25%), Positives = 169/387 (43%), Gaps = 33/387 (8%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDK 61
K V V+G G AG A +A+ G +L+++K + K C I + + EF++P D
Sbjct: 55 KLRVAVIGGGPAGGAAAETLAQGGIETILIERK--MDNCKPCGGAIPLCMVGEFNLPLD- 111
Query: 62 RFINREIYGAKIYSPSGYTAELRY---KHVSGVILERKVFDKMLAYYAAKAGAEVLA--- 115
I+R + K+ SPS ++ +H ++ R+V D L A K+GA V+
Sbjct: 112 -IIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLF 170
Query: 116 ----------RTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGIN 165
+ +GK K + +E++A ++ ADG S +A+
Sbjct: 171 LKMDHPENWDSPYTLHYTEYDGKTGATGTK---KTMEVDA--VIGADGANSRVAKSIDAG 225
Query: 166 TYAPPHEFDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDH 225
Y F Y DL ++ G++V+P Y W+FPK D VG G +
Sbjct: 226 DYDYAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKC-DHVAVGTGTVTHK 284
Query: 226 PQTAKYYL-DKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHG 284
K+ L + ++ I KI+ V +P + L K V +VGDAA V G
Sbjct: 285 GDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSK-RVALVGDAAGYVTKCSG 343
Query: 285 GGMKEAMKAASIAAKWIIKALEEENLEL----LKNYSEEWWRTEGPRMEKLLKLRKAMEK 340
G+ A K+ + A+ I++ + + L+ Y E+W +T P L L+K +
Sbjct: 344 EGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYR 403
Query: 341 LTDEDLDVFVQLVSGTDLEKLAGGNYL 367
++ + FV++ + ++K+ +YL
Sbjct: 404 -SNPAREAFVEMCNDEYVQKMTFDSYL 429
>sp|Q55087|CHLP_SYNY3 GERANYLGERANYL HYDROGENASE >gi|2126523|pir||S69286 geranylgeranyl
hydrogenase (EC 1.3.1.-) - Synechocystis sp. (strain
PCC 6803) >gi|1332619|emb|CAA66615.1| (X97972)
geranylgeranyl hydrogenase [Synechocystis sp.]
Length = 407
Score = 96.7 bits (237), Expect = 4e-19
Identities = 102/381 (26%), Positives = 164/381 (42%), Gaps = 27/381 (7%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
V VVG G AG + A + KAG L ++K + K C I + + EFD+P + I
Sbjct: 5 VAVVGGGPAGSSAAEILVKAGIETYLFERK--LDNAKPCGGAIPLCMVDEFDLPPE--II 60
Query: 65 NREIYGAKIYSPSGYTAE----LRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEV- 119
+R + K+ SPS L+ G+ R+V D L A K G +V+ T
Sbjct: 61 DRRVRKMKMISPSNIEVNIGQTLKDDEYIGMC-RREVLDGFLRERAEKLGTKVINGTVYK 119
Query: 120 VDVIRRNGKIVGVR-AKHE-----GEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEF 173
+D+ ++ + A H GE ++ V++ ADG S IA+ Y F
Sbjct: 120 LDIPSKDSDPYTLHYADHSVGGTTGEMKILKVDVVIGADGANSRIAKAIDAGDYNYAIAF 179
Query: 174 DSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYL 233
Y +L ++ G++V+P Y W+FPK D VG G + K
Sbjct: 180 QERIRLPEDKMAYYDELAEMYVGDDVSPDFYAWVFPK-YDHVAVGTGTMKVNKARIKDLQ 238
Query: 234 D--KWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAM 291
+ + +I++V +P + +V V +VGDAA V G G+ A
Sbjct: 239 AGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVV-GRVALVGDAAGTVTKSSGEGIYFAA 297
Query: 292 KAASIAAKWIIKALEEENLEL-----LKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDL 346
K+A + A+ I+ A + LK Y ++W + G L L++ + TD
Sbjct: 298 KSARMCAETIV-ATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYR-TDATR 355
Query: 347 DVFVQLVSGTDLEKLAGGNYL 367
+ FV++ S D++KL +YL
Sbjct: 356 EAFVEMCSDIDVQKLTFDSYL 376
>pir||B70310 conserved hypothetical protein aq_104 - Aquifex aeolicus
>gi|2982849|gb|AAC06471.1| (AE000673) hypothetical
protein [Aquifex aeolicus]
Length = 370
Score = 95.2 bits (233), Expect = 1e-18
Identities = 93/386 (24%), Positives = 172/386 (44%), Gaps = 31/386 (8%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDK 61
++DVVVVG+G +G + AR +++ G VLL+++K + K C ++ K +
Sbjct: 3 RFDVVVVGAGPSGSSAARYLSEKGLRVLLMERK-KLPRFKLCGGALSGRFSKYLPQDFKS 61
Query: 62 RFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVD 121
+ +N + G +L+ + I++R FD LA A + G E+ TE++D
Sbjct: 62 KVLN--VIHKGYLGFRGDKHKLKEREEVAYIIDRADFDHFLAQKAMEKGCELREETELLD 119
Query: 122 VIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGY-EYE 180
+ GKI+ K ++ ++ ADG S +A+ G + Y E
Sbjct: 120 LWEEKGKIILDTTKG-----KVSCDFLIGADGFHSKVAKFLGFKK-------EKYYRSVE 167
Query: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
+L EG + D + + RGY+W+FPK + IG+AS + L ++K
Sbjct: 168 VLAEG-EMDFNSVVIELGLVKRGYLWVFPKGN---KLNIGVASTEKENLLEVLKDYIKRQ 223
Query: 241 NI-PMRKILEVNVGLVPVGGFVKEL--VKDNVLVVGDAARQVNPVHGGGMKEAMKAASIA 297
I ++KI + +P +EL + +L+VGDA V+P+ G G+ + +A
Sbjct: 224 KIVKVKKIYKPKSWFIPFAEGSEELHTGRGRILLVGDAGNFVDPLLGEGIYYGYLSGLLA 283
Query: 298 AKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLT-----DEDLDVFVQL 352
I++ + K E E K+ KL +++ L+ +++
Sbjct: 284 GDAILENPQNPEKTYRKKVKE--LAKEFTYAGKIAKLAYRFQRVAYKMGGGTSLERYMEF 341
Query: 353 VSG-TDLEKLAGGNYLEVVKALMKHP 377
+ G T E++ +L+ +K L+ +P
Sbjct: 342 LKGHTTYEEMYKKGWLDFIKNLILYP 367
>gb|AAG20671.1| (AE005136) geranylgeranyl hydrogenase; BchP [Halobacterium sp.
NRC-1]
Length = 360
Score = 95.2 bits (233), Expect = 1e-18
Identities = 100/383 (26%), Positives = 168/383 (43%), Gaps = 31/383 (8%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
M YD VVVG G AG AR A+ G+ V+ + + +GTP C+ ++++V++ +
Sbjct: 1 MMYDFVVVGVGPAGARFARRAAQQGYDVIAFE-QGDLGTPLACSGHVSLDVWEFVPDEHH 59
Query: 61 KRFINREIYGAKIY-SPSGYTAELRYKH--VSGVILERKVFDKMLAYYAAKAGAEVLART 117
+I GA+ + + +A YK +S I +R D++LA A AGA+V
Sbjct: 60 DALFQNDIRGARFHLGGADSSAHPFYKSTPISNAI-DRVHLDEVLAEAARDAGADVREHH 118
Query: 118 EVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGY 177
V DV ++ V A+ + +++ AK++ +DG S + + P EF G
Sbjct: 119 TVTDVTEHRNRVT-VTARGPDDSIDVTAKMVAGSDGPRSRVRDALSL---PEPDEFLHG- 173
Query: 178 EYEMLIEGYDPDLIHLFFGNE--VAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDK 235
+DPD H F + P + W P+ + A V G+A+ + D
Sbjct: 174 -----ALAFDPDPDHQDFVDVHLTVPGFFAWRIPRGD--AGVEYGLAAAPGEDVAGRFDD 226
Query: 236 WLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAAS 295
+ + + + GL+P+G + ++GDAA Q P GGG++ M AA
Sbjct: 227 LVADYGVDVEHRCS---GLIPIGP-PDTVTSHRGFLLGDAAGQTKPFTGGGIRYGMTAAD 282
Query: 296 IAAKWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSG 355
AA + L+ + L Y E WR R L L +A + ++L SG
Sbjct: 283 AAA----RELDPDRPGTLAGY-ERAWRDALEREITLGHLVRAGYSMPTPIQSAGLRLFSG 337
Query: 356 ---TDLEKLAGGNYLEVVKALMK 375
D++K L+ +AL++
Sbjct: 338 EIAVDMDKPTSLFSLDQARALLR 360
>gb|AAK42505.1| Geranylgeranyl hydrogenase, putative [Sulfolobus solfataricus]
Length = 398
Score = 94.4 bits (231), Expect = 2e-18
Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 32/313 (10%)
Query: 57 IPYDK-RFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLA 115
+PY + + + ++ G ++YSP T + G ++ + + LA A G E+L
Sbjct: 6 MPYPQGKELEEKVEGIRLYSPDMKT--IWTVKGEGFEIDSPSYVQRLAKEARDRGVEILD 63
Query: 116 RTEVVDVIRRNGKIVGVRA--KHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEF 173
T + I K+ G + E +E +AK+ V A G ++ K P EF
Sbjct: 64 LTTAMKPIVIGNKVEGAVLFNRRTNETIEAKAKITVDATGYSTSFRNKL-------PFEF 116
Query: 174 ---------DSGYEYEMLIEGYDP----DLIHLFFGNEVAPRGYVWIFPKDEDRANVGIG 220
D+ Y ++ D + +F + +P GY W FPK ++ NVG+G
Sbjct: 117 PVTETLDDKDADIAYREVLNTKDEIEEYPYLRIFITQKASPGGYWWYFPKGPNKVNVGLG 176
Query: 221 IASD--HPQTAKYYLDKWLK--ENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAA 276
I +P ++Y +K++ +I ++L LVP + +V D V V+GD+A
Sbjct: 177 IQGGMGYPSIHEFY-NKYVDYYAPDIDKNRLLVKGGALVPTRRPLATIVWDGVAVIGDSA 235
Query: 277 RQVNPVHGGGMKEAMKAASIAAKWIIKALEEENLEL--LKNYSEEWWRTEGPRMEKLLKL 334
VNPVHGGG AM +A K I+ A E + L + +E + G + L
Sbjct: 236 FTVNPVHGGGKGSAMISAYCVGKAILNAFEVNDFSAKGLWDANECYIERYGAKQASLDLF 295
Query: 335 RKAMEKLTDEDLD 347
R+ +++L+D++++
Sbjct: 296 RRFLQRLSDDEIN 308
>pir||T34627 probable electron transfer oxidoreductase - Streptomyces coelicolor
>gi|5042280|emb|CAB44534.1| (AL078618) putative electron
transfer oxidoreductase [Streptomyces coelicolor]
Length = 430
Score = 92.4 bits (226), Expect = 8e-18
Identities = 94/338 (27%), Positives = 153/338 (44%), Gaps = 49/338 (14%)
Query: 4 DVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKE-----FDIP 58
DV+VVG+G AG T A +A++G VLL++ K A K C +G+T K+ DI
Sbjct: 14 DVIVVGAGPAGSTTAYHLARSGLDVLLLE-KTAFPREKVCGDGLTPRAVKQLVAMGIDIS 72
Query: 59 YDKRFINREIYGAKIYSPSGYTAELRYKHVS-----GVILERKVFDKMLAYYAAKAGAEV 113
+ ++ + G +I G +L + ++ G++ +R FD+ LA A KAGA +
Sbjct: 73 EEAGWLRNK--GLRIIG-GGSRLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGARL 129
Query: 114 LARTEVVDVI--RRNGKIVGVRAKHEGEPLEI--EAKVIVAADGVESTIARKAG------ 163
R V I R G+I GV AK + E+ A ++VAADG + ++ G
Sbjct: 130 YERCNVGAPIVDDRTGRITGVHAKLGEDKREVTFHAPLVVAADGNSTRLSLAMGLHRRED 189
Query: 164 ------INTY--APPHEFDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRA 215
+ TY +P H+ D + L + P + + P GY W+F + +
Sbjct: 190 RPMGVAVRTYFTSPRHDDDYLESWLELWDRRGPQ-------DRLLP-GYGWVFGMGDGTS 241
Query: 216 NVGIGI----ASDHPQTAKYYLDKWLKE-----NNIPMRKILEVNVGLVPVGGFVKELVK 266
NVG+G+ A+ + L W P + +P+ +
Sbjct: 242 NVGLGVLNTSAAFKELDWREILKAWCASMPEDWGYTPDNMTGPIRGAALPMAFNRQPHYT 301
Query: 267 DNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWIIKA 304
+L+VGDA VNP +G G+ AM++ IAA +++A
Sbjct: 302 KGLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVVVQA 339
>sp|P54805|YNH2_METBA HYPOTHETICAL 19.9 KDA PROTEIN IN NIFH2 5'REGION (ORF186)
>gi|984851|gb|AAA96016.1| (U32666) orf186
[Methanosarcina barkeri]
Length = 186
Score = 91.3 bits (223), Expect = 2e-17
Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 18/172 (10%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGI-----TIEVFKEFDI 57
YDVVVVG+G AG T A AK G SVLL+DKK IG+P QCA + + +E +
Sbjct: 7 YDVVVVGAGPAGSTAAMYAAKNGASVLLLDKKREIGSPIQCAGFLPDASEVQALLREAML 66
Query: 58 P-----YDKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAE 112
P Y + + I +I++P+ ++ V G +L+R +D+ LA AA+AGAE
Sbjct: 67 PDTLKNYPDSCVLQRIDNQRIFTPN---CNIKEFAVRGAVLDRCRYDQFLAEQAARAGAE 123
Query: 113 VLARTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGI 164
++ +T V + + GV K+ I+AK I+ ADG S +A+ G+
Sbjct: 124 LMIKTRVTKIEGTTVETSGVFGKY-----RIKAKAIIGADGPNSLVAKSKGL 170
>gi|11498628 bacteriochlorophyll synthase, 43 kDa subunit (chlP-2)
[Archaeoglobus fulgidus] >gi|7450120|pir||G69377
bacteriochlorophyll synthase, 43 kDa subunit (chlP-2)
homolog - Archaeoglobus fulgidus
>gi|2649572|gb|AAB90220.1| (AE001033)
bacteriochlorophyll synthase, 43 kDa subunit (chlP-2)
[Archaeoglobus fulgidus]
Length = 364
Score = 90.9 bits (222), Expect = 2e-17
Identities = 94/359 (26%), Positives = 161/359 (44%), Gaps = 40/359 (11%)
Query: 4 DVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEF-DIPYDKR 62
D VVG G AG A + K+ + V L ++ + G P QCA ++ + +K+ + ++
Sbjct: 2 DAAVVGGGPAGSLAAILLGKS-YDVALFEEHQSAGFPVQCAGLVSDKCYKKLKEHCKAEK 60
Query: 63 FINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVVDV 122
I I GA +SPSG + V++ERK+ D++L AA+ A+ V +
Sbjct: 61 AIENHIKGAFFFSPSGKI--VLEGRGEAVVVERKILDRLLFERAAER-----AKVFVKEK 113
Query: 123 IRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYEML 182
R NG + ++ E+ A+ I+ ADGV ST+ G T F + + E
Sbjct: 114 ARLNGFRIITPSR------EVSAEKIIGADGVNSTVREHFGFPTMG----FFTAVQVEAK 163
Query: 183 IEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKENNI 242
E D + + L+FG + + + P D A +G+ ++ P YL+ +K +
Sbjct: 164 FEPLDENCVELYFGGNWSDSFFAYAIPLG-DTARIGV-VSRSSPLR---YLENLMKRHPS 218
Query: 243 PMRKI----LEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAA 298
++ +E+N G +P + + K +V ++GDAA V P GGG+ + AA A
Sbjct: 219 VSGRVEGSAVELNAGAIP--DRLVKFSKRDVALIGDAAGMVKPYTGGGLYYHLIAAEKLA 276
Query: 299 KWIIKALEEENLELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTD 357
E+ LK Y + + + G +RK + L DE L+ ++ D
Sbjct: 277 ---------ESFPDLKGYEKSYLKEMGREYRFGYAVRK-LYSLPDEKLEQLFSAMADFD 325
>sp|P77337|YDIS_ECOLI PROBABLE ELECTRON TRANSFER FLAVOPROTEIN-QUINONE OXIDOREDUCTASE YDIS
>gi|7444930|pir||C64928 fixC protein homolog b1699 -
Escherichia coli >gi|1742778|dbj|BAA15468.1| (D90812)
FixC protein. [Escherichia coli]
>gi|1787991|gb|AAC74769.1| (AE000265) flavoprotein;
probably electron transport [Escherichia coli K12]
Length = 429
Score = 88.2 bits (215), Expect = 2e-16
Identities = 95/358 (26%), Positives = 164/358 (45%), Gaps = 51/358 (14%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGI---TIE-VFKEFDI 57
K+D +VVG+GVAG A +A+AG VL++++ + G + T+E + F +
Sbjct: 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAV 64
Query: 58 --PYDKRFINREIYGAKIYSPSGYTAELRY------KHVSGVILERKVFDKMLAYYAAKA 109
P +++ +I + + S T + +H S +L ++ D L A +A
Sbjct: 65 SAPVERKVTREKI--SFLTEESAVTLDFHREQPDVPQHASYTVLRNRL-DPWLMEQAEQA 121
Query: 110 GAEVLARTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAP 169
GA+ + V ++R K+ GV+A G+ + +EA V++ ADGV S + R G+ +
Sbjct: 122 GAQFIPGVRVDALVREGNKVTGVQA---GDDI-LEANVVILADGVNSMLGRSLGMVPASD 177
Query: 170 PHEFDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIF---PKD---------EDRANV 217
PH + G + + G P+ I+ F N G W+F P D ++ ++
Sbjct: 178 PHHYAVGVKE---VIGLTPEQINDRF-NITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSI 233
Query: 218 GIGIASD-----HPQTAKYYLDKWLKENN-----IPMRKILEVNVGLVPVGG--FVKELV 265
+G+ H Q + + + K++ I K+LE + +VP GG V +LV
Sbjct: 234 SLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLV 293
Query: 266 KDNVLVVGDAARQVNPV--HGGGMKEAMKAASIAAKWIIKALEEENLEL--LKNYSEE 319
+ V++VGDAA + GM A+ +A AA +I A E + L Y E
Sbjct: 294 NEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRE 351
>dbj|BAA90346.1| (AP001080) Similar to geranylgeranyl hydrogenase. (AF069318) [Oryza
sativa] >gi|7242920|dbj|BAA92518.1| (AP001383) Similar
to geranylgeranyl hydrogenase. (AF069318) [Oryza sativa]
Length = 452
Score = 87.8 bits (214), Expect = 2e-16
Identities = 78/307 (25%), Positives = 128/307 (41%), Gaps = 18/307 (5%)
Query: 5 VVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDKRFI 64
V VVG G AG + A +A AG L+++ + P C I + + EF IP D +
Sbjct: 35 VAVVGGGPAGASAAEALASAGAQAFLLERNPSGAKP--CGGAIPLCMLDEFAIPRD--LV 90
Query: 65 NREIYGAKIYSPSGYTAELRYKHVSGV---ILERKVFDKMLAYYAAKAGAEVL----ART 117
+R + ++ SPS A+ G +L R+V D L AA AGA ++
Sbjct: 91 DRRVTRMRVLSPSNLAADFSRALPPGAHIPMLRREVLDSFLRRRAADAGATLVPGLVTSL 150
Query: 118 EVVDVIRRNGKIVGVRAKHEGEPLE----IEAKVIVAADGVESTIARKAGINTYAPPHEF 173
+ + +V + G P +E ++ ADG S +AR+ G Y+ F
Sbjct: 151 SLPADPATDPYLVHYISSDSGGPSSSRCVLEVDAVIGADGANSRVAREVGAGDYSTAIAF 210
Query: 174 DSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYL 233
Y DL ++ G +V+P Y W+FPK D VG G + P+ +
Sbjct: 211 QERIRLPDEAMAYYDDLAEMYVGGDVSPDFYGWVFPKC-DHVAVGTGTVAAKPEIKRLQS 269
Query: 234 D-KWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMK 292
+ + +++ V +P + +V V +VGDAA V G G+ A +
Sbjct: 270 GIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVV-GRVALVGDAAGYVTRCSGEGIYFAAR 328
Query: 293 AASIAAK 299
+ + +
Sbjct: 329 SGRLCGR 335
>pir||D70549 hypothetical protein Rv0561c - Mycobacterium tuberculosis (strain
H37RV) >gi|2114023|emb|CAB08972.1| (Z95558) hypothetical
protein Rv0561c [Mycobacterium tuberculosis]
Length = 408
Score = 85.0 bits (207), Expect = 1e-15
Identities = 86/319 (26%), Positives = 132/319 (40%), Gaps = 34/319 (10%)
Query: 4 DVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEF-DIPYDKR 62
DVVVVG+G AG A A+AG VL++D A K C +G+T E + K
Sbjct: 8 DVVVVGAGPAGSAAAAWAARAGRDVLVIDT-ATFPRDKPCGDGLTPRAVAELHQLGLGKW 66
Query: 63 FINREIYGAKIYSPSGYTAELRYKHVS----GVILERKVFDKMLAYYAAKAGAEVLARTE 118
+ + S G E+ + S G + R D + A GA +L +
Sbjct: 67 LADHIRHRGLRMSGFGGEVEVDWPGPSFPSYGSAVARLELDDRIRKVAEDTGARMLLGAK 126
Query: 119 VVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYE 178
V V + + V +G E+ + ++ ADG S + RK G +
Sbjct: 127 AVAVHHDSSRRVVSLTLADGT--EVGCRQLIVADGARSPLGRKLG-------RRWHRETV 177
Query: 179 YEMLIEGY-------DPDL---IHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQT 228
Y + + GY DP L + L + GY WIFP N+G+G S +
Sbjct: 178 YGVAVRGYLSTAYSDDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSRRP 237
Query: 229 A--------KYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVN 280
A YY D E + V+ L+P+GG V + N +++GDAA VN
Sbjct: 238 ADLALRPLISYYTDLRRDEWGFTGQP-RAVSSALLPMGGAVSGVAGSNWMLIGDAAACVN 296
Query: 281 PVHGGGMKEAMKAASIAAK 299
P++G G+ ++ +AA+
Sbjct: 297 PLNGEGIDYGLETGRLAAE 315
>gb|AAG18984.1| (AE004999) Vng0439c [Halobacterium sp. NRC-1]
Length = 456
Score = 81.1 bits (197), Expect = 2e-14
Identities = 100/386 (25%), Positives = 160/386 (40%), Gaps = 31/386 (8%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFD--IP- 58
+YDVVVVG+G AG A VA AG+ V++V++K+A A G ++ F IP
Sbjct: 5 EYDVVVVGAGTAGCYAAATVADAGYDVVVVERKSA-SEAGHIACGDALKGADNFPDVIPK 63
Query: 59 --YDKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLAR 116
+ F N + + P T +++R+ + + + A + G
Sbjct: 64 SQLEPAFTNTGVDHGRFEIPREDTVLNIPVPGELAVIDRREYGRCVIDGAERTGVTFSYD 123
Query: 117 TEVVDVIRRN-GKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDS 175
T V VI+ + G++ GV +G E +++ A G S + K ++ FD+
Sbjct: 124 TVVESVIQDDDGRVTGVTGIRDGRGHEFTGDIVIDAAGSLSILQDKVDVSGAT----FDT 179
Query: 176 GYEYEMLIEGYD-----PDLIH----LFFGNEVAPRGYVWIFPKDEDRANVGIGIA-SDH 225
Y Y P+ + L F GY+W FP+ + N G+G ++
Sbjct: 180 NVSYSQFCSAYREIVEVPEPVEWDDALVFKPTDRAAGYLWYFPRTDTEINAGLGFQMTEE 239
Query: 226 PQTAKYYLDKWLKENNIPMRKILEVNVGL---VPVGGFVKELVKDNVLVVGDAARQVNPV 282
P T L L++ P + EV L +P + VGDAA VNP
Sbjct: 240 PMTLVDDLKADLQQR--PEFEGAEVTDKLGAALPTRRPYDSATAPGFMAVGDAAGHVNPT 297
Query: 283 HGGGMKEAMKAASIAAKWIIKALEEENL--ELLKNYSEEWWRTEGPRMEKLLKLRKAMEK 340
GGG+ A A + A + I+A E ++ +L Y+E G R L + M
Sbjct: 298 TGGGIAGAAYAGTYAGERAIRAAETGDVSESMLWEYNEHVMDHFGARY-AALDVYNIMS- 355
Query: 341 LTDEDLDVFVQLVSGTDLEKLAGGNY 366
T D+D + L++ +KLA Y
Sbjct: 356 -TAIDVDDLMGLLAALPGQKLAEALY 380
>sp|P96800|YOR3_METBA HYPOTHETICAL 31.9 KDA PROTEIN IN HDRD 3'REGION (ORF3)
>gi|1890201|emb|CAA70994.1| (Y09870) hypothetical
protein [Methanosarcina barkeri]
Length = 282
Score = 80.8 bits (196), Expect = 3e-14
Identities = 75/280 (26%), Positives = 122/280 (42%), Gaps = 22/280 (7%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYDK 61
KYDVV++G+G AG A +AK+ +VL++D K + K CA G+T + F FD P
Sbjct: 6 KYDVVIIGAGPAGSYAAYMLAKSKINVLVID-KYSFPRYKPCAGGLTAKAFNSFDFP--- 61
Query: 62 RFINREIYGAKIYSPSGYTAELRYKHVSG-----VILERKVFDKMLAYYAAKAGAEVLAR 116
I++E+ + + Y ++ + ++SG ++ERK FD L A +GA L
Sbjct: 62 --ISKEVKYSTNSIVTSYKNQI-FHNISGNKTLVKMIERKEFDDFLIKKAVDSGATFLDG 118
Query: 117 TEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSG 176
+V ++ N + ++ E ++ ADG + R I +
Sbjct: 119 MKVTEITWENAEF-SIKTDSE----FFRCNYLIGADGTNGIVNRTFNI---VERDLYGFA 170
Query: 177 YEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKW 236
E + + ++ F P GY+WIFPKDE KY LD
Sbjct: 171 VEINCPVSRDNIGKFNMTFDFGTVPNGYLWIFPKDEYVCVGAYTTNRKMKNIQKYLLDYI 230
Query: 237 LKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAA 276
K IP + L+ ++ +P G + ++VGDAA
Sbjct: 231 EKLGLIPESEKLKGHI--IPYYGINYKQPDFPCVLVGDAA 268
>emb|CAB95292.1| (AL359779) putative hydrogenase [Streptomyces coelicolor A3(2)]
Length = 422
Score = 80.4 bits (195), Expect = 3e-14
Identities = 84/318 (26%), Positives = 134/318 (41%), Gaps = 31/318 (9%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGI----TIEVFKEFDIP 58
+DVVVVG+G AG + A A AG VLL++ KA + K C GI + F++P
Sbjct: 15 WDVVVVGAGPAGASAAYAAAVAGRRVLLLE-KAELPRYKTCGGGIIGPSRDTLPPGFELP 73
Query: 59 YDKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTE 118
+ R ++ + +T R + + ++ R FD L +A KAGAE+
Sbjct: 74 FQDR-----VHAVTFSNNGRFTRTRRSRQMLFGLINRPDFDLQLVEHAQKAGAELRTGAT 128
Query: 119 VVDVIRRNGKIVGVR----AKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFD 174
V V + + R GE + A+ +V ADG S I G+ + D
Sbjct: 129 VTRVEQHGSAVPDRRTVAVVLQGGE--TVLARAVVGADGSASRIGAHVGVKL----DQVD 182
Query: 175 SGYEYEMLIEGYDPDLIHLFFGNEV------APRGYVWIFPKDEDRANVGIGIASDHPQT 228
G E E+ + P+ + + V P Y W+FPK D VG+ A
Sbjct: 183 LGLEAEIPV----PETVAEDWKGRVLIDWGPIPGSYGWVFPKG-DTLTVGVISARGEGAA 237
Query: 229 AKYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMK 288
K YL+ ++ + + + L L + VLV GDAA + P G+
Sbjct: 238 TKRYLEDFVARLGLAGFEPSVSSGHLTRCRADDSPLSRGRVLVCGDAAGLLEPWTREGIS 297
Query: 289 EAMKAASIAAKWIIKALE 306
A+++ +A +W ++ E
Sbjct: 298 FALRSGRLAGEWAVRISE 315
>sp|P31575|FIXC_ECOLI FIXC PROTEIN >gi|7444931|pir||C64725 fixC protein - Escherichia
coli >gi|1786227|gb|AAC73154.1| (AE000114) flavoprotein;
electron transport [Escherichia coli K12]
Length = 428
Score = 80.0 bits (194), Expect = 4e-14
Identities = 98/396 (24%), Positives = 169/396 (41%), Gaps = 57/396 (14%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIP--YD 60
+D ++VG+G+AG A +A+ G VL++++ + G K G E IP D
Sbjct: 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA-KNVTGGRLYAHSLEHIIPGFAD 64
Query: 61 KRFINREIYGAKIYSPSGYTA---------ELRYKHVSGVILERKVFDKMLAYYAAKAGA 111
+ R I K+ + +A E S +L K FD L A +AGA
Sbjct: 65 SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSK-FDAWLMEQAEEAGA 123
Query: 112 EVLARTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPH 171
+++ V ++++R+GK+VGV A + IEAK ++ ADGV S +A K G+ P
Sbjct: 124 QLITGIRVDNLVQRDGKVVGVEADGD----VIEAKTVILADGVNSILAEKLGMAKRVKPT 179
Query: 172 EFDSG-----------YEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIG 220
+ G E ++G + LF G+ +E+ ++G+
Sbjct: 180 DVAVGVKELIELPKSVIEDRFQLQG-NQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLV 238
Query: 221 IASDHPQTAKYYLDKWLKENN--------IPMRKILEVNVGLVPVGG--FVKELVKDNVL 270
H AK + + L++ I K++E + +VP G + ELV D VL
Sbjct: 239 CGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVL 298
Query: 271 VVGDAARQVNPVHG--GGMKEAMKAASIAAKWIIKALEEENLELLKNYSEEWWRTEGPRM 328
+ GDAA + GM A+ A AAK ++ A++ ++
Sbjct: 299 IAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFS----------------K 342
Query: 329 EKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEKLAGG 364
+KL + R+ +E D+ ++ +L + D ++ G
Sbjct: 343 QKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSG 378
>pir||S40564 hypothetical protein - Escherichia coli >gi|216468|dbj|BAA01319.1|
(D10483) fixC protein homolog(PIR:S14072) [Escherichia
coli]
Length = 428
Score = 79.2 bits (192), Expect = 7e-14
Identities = 98/398 (24%), Positives = 171/398 (42%), Gaps = 61/398 (15%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIP--YD 60
+D ++VG+G+AG A +A+ G VL++++ + G K G E IP D
Sbjct: 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA-KNVTGGRLYAHSLEHIIPGFAD 64
Query: 61 KRFINREIYGAKIYSPSGYTA---------ELRYKHVSGVILERKVFDKMLAYYAAKAGA 111
+ R I K+ + +A E S +L K FD L A +AGA
Sbjct: 65 SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSK-FDAWLMEQAEEAGA 123
Query: 112 EVLARTEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPH 171
+++ V ++++R+GK+VGV A + IEAK ++ ADGV S +A K G+ P
Sbjct: 124 QLITGIRVDNLVQRDGKVVGVEADGD----VIEAKTVILADGVNSILAEKLGMAKRVKPT 179
Query: 172 EFDSG-----------YEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIG 220
+ G E ++G + LF G+ +E+ ++G+
Sbjct: 180 DVAVGVKELIELPKSVIEDRFQLQG-NQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLV 238
Query: 221 IASDHPQTAKYYLDKWLKENN--------IPMRKILEVNVGLVPVGG--FVKELVKDNVL 270
H AK + + L++ I K++E + ++P G + ELV D VL
Sbjct: 239 CGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHIMPEAGINMLPELVGDGVL 298
Query: 271 VVGDAARQVNPVHGG----GMKEAMKAASIAAKWIIKALEEENLELLKNYSEEWWRTEGP 326
+ GDAA ++ G GM A+ A AAK ++ A++ ++
Sbjct: 299 IAGDAAGMC--MNFGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFS--------------- 341
Query: 327 RMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEKLAGG 364
+KL + R+ +E D+ ++ +L + D ++ G
Sbjct: 342 -KQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSG 378
>pir||S75024 hypothetical protein slr1998 - Synechocystis sp. (strain PCC 6803)
>gi|1652969|dbj|BAA17886.1| (D90910) hypothetical
protein [Synechocystis sp.]
Length = 425
Score = 77.3 bits (187), Expect = 3e-13
Identities = 88/367 (23%), Positives = 158/367 (42%), Gaps = 58/367 (15%)
Query: 2 KYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIP--Y 59
++ VV++G+G AG AR +A+ G VLLV++ + + +E FD+P
Sbjct: 3 EFAVVIIGAGPAGGQCARQLAQQGVRVLLVEQHSNFSQNNYSSAASPLETMALFDLPPGV 62
Query: 60 DKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEV------ 113
R+ A Y+ + R GV+ + + LA KAG +V
Sbjct: 63 VARYWRNLAIAATEKEQIWYSDQPR-----GVVFDFAKLRQFLADTVTKAGGQVWLGHRF 117
Query: 114 LARTEVVD----VIRRNGK-IVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYA 168
+V D +RR+ K + + + E + ++ +V++ A G +++A IN
Sbjct: 118 WGYQQVGDGLEVTLRRSSKNSLSSDSVEKVEKVTVKTQVLIDATG-----SKRAVINCGQ 172
Query: 169 PP----HEFDSGYEYEMLIEGYD------PDLIHLFFGNEVAPRGYVWIFPKDEDRANVG 218
P +++ G E LI + D + F G +P+GY WIFP D + VG
Sbjct: 173 PKATDNNQYYRGIGTEYLITVDETTHQRFADTLVFFLGYRWSPQGYSWIFPMDNHQLKVG 232
Query: 219 IGI-ASDHP-----QTAKYYLDKWLKENNIPMRKILEVNVGLVPVGGFVKELV------- 265
I A H + + Y + +++ K+ + L + G V +
Sbjct: 233 TAIFAGQHRYLGELKPLRSYTEAIIRD----YLKLEKSQYHLEEIHGSVLDYAVNQGDTY 288
Query: 266 -KDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWI-------IKALEEENLELLKNYS 317
+ +VL +GDA VN + G G++ M+ A+IA ++ ++A E+ + +++
Sbjct: 289 HRGSVLAIGDAVSTVNFLGGEGIRHGMQGANIAVPFVADYLRGHVQAFEKYEQAMKAHFA 348
Query: 318 EEWWRTE 324
E W RTE
Sbjct: 349 EPWQRTE 355
>gb|AAF05771.1|AF193857_1 (AF193857) putative CMF receptor CMFR1 [Dictyostelium discoideum]
Length = 510
Score = 75.7 bits (183), Expect = 9e-13
Identities = 85/352 (24%), Positives = 156/352 (44%), Gaps = 44/352 (12%)
Query: 3 YDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITI---EVFKEFDIPY 59
YDV +G+G +G + +A+ G V L++KK K C + + ++ +E +
Sbjct: 81 YDVATIGAGPSGSVLGYYLAREGRKVALLEKKV-FPRDKYCGDAVATMAQDILREMGVM- 138
Query: 60 DKRFINREI----YGAKIYSPSGYT----------AELRYKHVSGVILERKVFDKMLAYY 105
K ++ ++ SP+G + + +Y + + ++R V D+ +A
Sbjct: 139 -KELVDEDLGHFAQNGGFVSPNGNSFIGNSAKELKRDAKYNRGAVIAVKRIVLDEKVAKA 197
Query: 106 AAKAGAEVLARTEVVDVI--RRNG--KIVGVRAKHEGEPLEIEAKVIVAADGVESTIARK 161
A + GA++ T V + R G I V ++ + + A+V+V ADG S AR+
Sbjct: 198 AKRMGADLKENTTVENATFDRSTGVWTINCVDSEDNTKKIVYRARVLVCADGSPSNAARQ 257
Query: 162 AGINTYAPPHEFDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANV---- 217
G P Y YD + F+ + P GY I + D N
Sbjct: 258 LGYVHTEPNGICSRAYVKNNTTFRYDGVV---FYPPSLLP-GYCAIIREARDELNYLAYI 313
Query: 218 --GIGIASDHPQTAKYYLDKWLKENNI-----PMRKILEVNVGLVPVGGFVKELVKDNVL 270
G + +D +KY+ ++ I P I + + +GG +K+ D++L
Sbjct: 314 IPGGKVTND--DLSKYHHQYMTEDPFISAALGPNPDIERMKAAPLRLGG-IKKSYDDHLL 370
Query: 271 VVGDAARQVNPVHGGGMKEAMKAASIAAKWIIKALEEENL--ELLKNYSEEW 320
+VGDAA ++P+ G G++ AM+ + +A+ +I+A E +L + LK Y + W
Sbjct: 371 IVGDAAGFIDPLTGEGIQYAMEGSRLASLALIQAFNERDLSHQSLKRYQDFW 422
>gb|AAK42929.1| FIXC protein homolog (fixC) [Sulfolobus solfataricus]
Length = 395
Score = 74.5 bits (180), Expect = 2e-12
Identities = 88/342 (25%), Positives = 144/342 (41%), Gaps = 38/342 (11%)
Query: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEF----D 56
MK+D+VVVG+G AG + A A+ G VLL+++ G+ I +E F
Sbjct: 1 MKFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIAS 60
Query: 57 IPYDKRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLAR 116
IP +++ N ++ + S S T + + R DK +A A KAGA ++ +
Sbjct: 61 IPIERKVKNVDLI---LLSDSNRTRISVNVESNLATVARLKLDKWMAQQAEKAGALLITK 117
Query: 117 TEVVDVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSG 176
T V+ V R G K + EI A +V A+GV + ++ KA I P D
Sbjct: 118 TTVLGVERE-----GNEYKISTDRGEITADRVVLAEGVNALVSMKANIRPDLTP---DHA 169
Query: 177 YEYEMLIEGYDPDLIHLFFGNEVAPRGYVW-IFPKD-----------EDRANVGIGIASD 224
+ + + D I+ FG + G W I D +D +G GI
Sbjct: 170 AQTVKEVYSLNKDEINKRFGFKADDEGISWRILGTDPVPYAGFLYVYKDAVAIGAGIPMK 229
Query: 225 -------HPQTAKYYLDKWLKENN-IPMRKILEVNVGLVPVGGFVK-ELVKDNVLVVGDA 275
P T + + L N + + E + ++P GF + V + GDA
Sbjct: 230 ILIKRKITPYTVLDEVKERLNFNELVKGASLREYSAKVIPEYGFPSWKACSGKVYLAGDA 289
Query: 276 ARQVNPVHGGGMKEAMKAASIAAKWIIKALE--EENLELLKN 315
V+P+ G+ A+ + +A K +++ E + EL+KN
Sbjct: 290 IGLVDPLTFNGIGPAVASGVVAGKAALESYECNKYEYELMKN 331
>dbj|BAA18339.1| (D90913) 391 aa (43 kD) bacteriochlorophyll synthase subunit
[Synechocystis sp.]
Length = 359
Score = 74.1 bits (179), Expect = 3e-12
Identities = 86/332 (25%), Positives = 141/332 (41%), Gaps = 25/332 (7%)
Query: 54 EFDIPYDKRFINREIYGAKIYSPSGYTAE----LRYKHVSGVILERKVFDKMLAYYAAKA 109
EFD+P + I+R + K+ SPS L+ G+ R+V D L A K
Sbjct: 4 EFDLPPE--IIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMC-RREVLDGFLRERAEKL 60
Query: 110 GAEVLARTEV-VDVIRRNGKIVGVR-AKHE-----GEPLEIEAKVIVAADGVESTIARKA 162
G +V+ T +D+ ++ + A H GE ++ V++ ADG S IA+
Sbjct: 61 GTKVINGTVYKLDIPSKDSDPYTLHYADHSVGGTTGEMKILKVDVVIGADGANSRIAKAI 120
Query: 163 GINTYAPPHEFDSGYEYEMLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIA 222
Y F Y +L ++ G++V+P Y W+FPK D VG G
Sbjct: 121 DAGDYNYAIAFQERIRLPEDKMAYYDELAEMYVGDDVSPDFYAWVFPK-YDHVAVGTGTM 179
Query: 223 SDHPQTAKYYLD--KWLKENNIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVN 280
+ K + + +I++V +P + +V V +VGDAA V
Sbjct: 180 KVNKARIKDLQAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVV-GRVALVGDAAGTVT 238
Query: 281 PVHGGGMKEAMKAASIAAKWIIKALEEENLEL-----LKNYSEEWWRTEGPRMEKLLKLR 335
G G+ A K+A + A+ I+ A + LK Y ++W + G L L+
Sbjct: 239 KSSGEGIYFAAKSARMCAETIV-ATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQ 297
Query: 336 KAMEKLTDEDLDVFVQLVSGTDLEKLAGGNYL 367
+ + TD + FV++ S D++KL +YL
Sbjct: 298 RVFYR-TDATREAFVEMCSDIDVQKLTFDSYL 328
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147756460
Number of Sequences: 2977
Number of extensions: 6398313
Number of successful extensions: 19512
Number of sequences better than 1.0e-10: 44
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 19388
Number of HSP's gapped (non-prelim): 49
length of query: 393
length of database: 189,106,746
effective HSP length: 57
effective length of query: 336
effective length of database: 154,992,987
effective search space: 52077643632
effective search space used: 52077643632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)