BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0111 (PAB0111) DE:Hypothetical protein
         (313 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75205 hypothetical protein PAB0111 - Pyrococcus abyssi (st...   642  0.0
pir||G71240 hypothetical protein PH0185 - Pyrococcus horikoshii ...   467  e-131

>pir||E75205 hypothetical protein PAB0111 - Pyrococcus abyssi (strain Orsay)
           >gi|5457601|emb|CAB49092.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 313
           
 Score =  642 bits (1639), Expect = 0.0
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MVAAVEEAKSLATSGIFEGELSNIITVSKPPWVSEPHTGKLERIILLVGEGKGKFSEARG 60
           MVAAVEEAKSLATSGIFEGELSNIITVSKPPWVSEPHTGKLERIILLVGEGKGKFSEARG
Sbjct: 1   MVAAVEEAKSLATSGIFEGELSNIITVSKPPWVSEPHTGKLERIILLVGEGKGKFSEARG 60

Query: 61  IPRSIGCLGNNKLLLYREKLSVSKFKRVIDEFKSLNPNGEVYVTNYDDINDAVEIAMHAA 120
           IPRSIGCLGNNKLLLYREKLSVSKFKRVIDEFKSLNPNGEVYVTNYDDINDAVEIAMHAA
Sbjct: 61  IPRSIGCLGNNKLLLYREKLSVSKFKRVIDEFKSLNPNGEVYVTNYDDINDAVEIAMHAA 120

Query: 121 RRGLKTYLIARAEDVPNVPEDRSFKLVGEYIYGEDGLDHLDKIDILMLVMRYKEYKSLIK 180
           RRGLKTYLIARAEDVPNVPEDRSFKLVGEYIYGEDGLDHLDKIDILMLVMRYKEYKSLIK
Sbjct: 121 RRGLKTYLIARAEDVPNVPEDRSFKLVGEYIYGEDGLDHLDKIDILMLVMRYKEYKSLIK 180

Query: 181 EGIDFDGEIWIDILYPGSFKFLDFNPVEIRKIYNPSAMTYSPCMAGLIAISPEGFVTPCP 240
           EGIDFDGEIWIDILYPGSFKFLDFNPVEIRKIYNPSAMTYSPCMAGLIAISPEGFVTPCP
Sbjct: 181 EGIDFDGEIWIDILYPGSFKFLDFNPVEIRKIYNPSAMTYSPCMAGLIAISPEGFVTPCP 240

Query: 241 LLRKIIVGDITKESLRKIVKKQKLRRFWKLTKDDIEPCSRCSFRYVCHDCRALEYQATGE 300
           LLRKIIVGDITKESLRKIVKKQKLRRFWKLTKDDIEPCSRCSFRYVCHDCRALEYQATGE
Sbjct: 241 LLRKIIVGDITKESLRKIVKKQKLRRFWKLTKDDIEPCSRCSFRYVCHDCRALEYQATGE 300

Query: 301 LFGMEFCPLLDFF 313
           LFGMEFCPLLDFF
Sbjct: 301 LFGMEFCPLLDFF 313


>pir||G71240 hypothetical protein PH0185 - Pyrococcus horikoshii
           >gi|3256571|dbj|BAA29254.1| (AP000001) 310aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 310
           
 Score =  467 bits (1189), Expect = e-131
 Identities = 215/308 (69%), Positives = 258/308 (82%), Gaps = 2/308 (0%)

Query: 4   AVEEAKSLATSGIFEGELSNIITVSKPPWVSEPHTGKLERIILLVGEGKGKFSEARGIPR 63
           +VE+ + +    +  G  + I+TVSKPPW S+ H GKLERIILL+G GKGKFSE  GIPR
Sbjct: 3   SVEKTRVIVADEVSFGR-AKIVTVSKPPWTSKFHKGKLERIILLIGRGKGKFSEVEGIPR 61

Query: 64  SIGCLGNNKLLLYREKLSVSKFKRVIDEFKSLNPNGEVYVTNYDDINDAVEIAMHAARRG 123
           SIGCLGNN+L LYREKL +SKFK VIDEF  LNPNGEVY+TNYDDI DAVE+A ++A++G
Sbjct: 62  SIGCLGNNRLTLYREKLPISKFKEVIDEFSMLNPNGEVYITNYDDIKDAVELAEYSAKKG 121

Query: 124 LKTYLIARAEDVPNVPEDRSFKLVGEYIYGEDGLDHLDKIDILMLVMRYKEYKSLIKEGI 183
           L TYLIA + DVPNVP+DR FKLVGEY Y E   D +D +DIL++V  Y +Y+ L+ +G+
Sbjct: 122 LDTYLIALSVDVPNVPKDRKFKLVGEYFYQELD-DSIDDVDILLIVANYTQYRKLLDDGL 180

Query: 184 DFDGEIWIDILYPGSFKFLDFNPVEIRKIYNPSAMTYSPCMAGLIAISPEGFVTPCPLLR 243
            F GE+W+D+LYPGS KFLDFNP+E+RKI NPS++TYSPCM+GL+AISPEGF TPCPLLR
Sbjct: 181 RFSGEVWVDLLYPGSLKFLDFNPIEVRKILNPSSITYSPCMSGLVAISPEGFATPCPLLR 240

Query: 244 KIIVGDITKESLRKIVKKQKLRRFWKLTKDDIEPCSRCSFRYVCHDCRALEYQATGELFG 303
           K IVGD+TKESL+ IVKKQ+LR+FWKLTKD IE C RCSFRY+CHDCRALEYQATGELFG
Sbjct: 241 KFIVGDVTKESLKTIVKKQRLRKFWKLTKDKIETCKRCSFRYMCHDCRALEYQATGELFG 300

Query: 304 MEFCPLLD 311
           +EFCPLLD
Sbjct: 301 VEFCPLLD 308


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120148876
Number of Sequences: 2977
Number of extensions: 5247093
Number of successful extensions: 11433
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11430
Number of HSP's gapped (non-prelim): 2
length of query: 313
length of database: 189,106,746
effective HSP length: 52
effective length of query: 261
effective length of database: 157,985,422
effective search space: 41234195142
effective search space used: 41234195142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)