BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0112 (PAB0112) DE:Hypothetical protein
(251 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75205 hypothetical protein PAB0112 - Pyrococcus abyssi (st... 501 e-141
pir||H71240 hypothetical protein PH0186 - Pyrococcus horikoshii ... 488 e-137
gi|11499038 conserved hypothetical protein [Archaeoglobus fulgid... 208 4e-53
pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (str... 192 4e-48
pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii ... 188 5e-47
pir||H72384 conserved hypothetical protein - Thermotoga maritima... 187 8e-47
pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (str... 178 4e-44
pir||F64469 hypothetical protein MJ1359 - Methanococcus jannasch... 178 7e-44
pir||T44269 hypothetical protein KaiC [imported] - Synechococcus... 164 1e-39
gb|AAK42049.1| Conserved hypothetical protein [Sulfolobus solfat... 157 1e-37
pir||S76478 hypothetical protein - Synechocystis sp. (strain PCC... 157 2e-37
pir||S76850 hypothetical protein - Synechocystis sp. (strain PCC... 155 6e-37
gb|AAG01686.1|AF222602_1 (AF222602) KaiC [Nodularia PCC73104] 150 2e-35
gb|AAG01690.1|AF222605_1 (AF222605) KaiC [Cylindrospermum PCC7417] 149 3e-35
pir||S75060 conserved hypothetical protein sll1595 - Synechocyst... 140 2e-32
gb|AAG01689.1|AF222604_1 (AF222604) KaiC [Geitlerinema PCC7105] 131 9e-30
gb|AAG01688.1|AF222603_1 (AF222603) KaiC [Chlorogloeopsis fritsc... 127 2e-28
gb|AAG02174.1|AF239752_1 (AF239752) KaiC [Chroococcidiopsis ther... 125 5e-28
gb|AAG01684.1|AF222600_1 (AF222600) KaiC [Scytonema PCC7110] 124 1e-27
gb|AAG02175.1|AF239753_1 (AF239753) KaiC [Nostoc muscorum] 123 2e-27
gb|AAG02177.1|AF239755_1 (AF239755) KaiC [Gloeobacter violaceus] 122 3e-27
gb|AAG01685.1|AF222601_1 (AF222601) KaiC [Xenococcus PCC7305] >g... 120 2e-26
gb|AAG20092.1| (AE005088) circadian regulator; KaiC [Halobacteri... 116 2e-25
gi|11498064 conserved hypothetical protein [Archaeoglobus fulgid... 115 5e-25
gb|AAG01683.1|AF222599_1 (AF222599) KaiC [Chroococcidiopsis PCC6... 115 7e-25
gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfat... 111 8e-24
pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii ... 111 8e-24
pir||D69012 conserved hypothetical protein MTH1094 - Methanobact... 106 2e-22
gi|11497963 conserved hypothetical protein [Archaeoglobus fulgid... 105 5e-22
pir||E75070 recombinase related PAB0642 - Pyrococcus abyssi (str... 96 5e-19
pir||D71095 hypothetical protein PH1025 - Pyrococcus horikoshii ... 95 9e-19
pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (str... 86 4e-16
pir||C69157 recombinase - Methanobacterium thermoautotrophicum (... 82 9e-15
pir||F69066 conserved hypothetical protein MTH1498 - Methanobact... 72 6e-12
pir||F69178 conserved hypothetical protein MTH593 - Methanobacte... 71 1e-11
>pir||F75205 hypothetical protein PAB0112 - Pyrococcus abyssi (strain Orsay)
>gi|5457602|emb|CAB49093.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 501 bits (1275), Expect = e-141
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MMIMSYQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGE 60
MMIMSYQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGE
Sbjct: 1 MMIMSYQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGE 60
Query: 61 PGVFVTLEERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNV 120
PGVFVTLEERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNV
Sbjct: 61 PGVFVTLEERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNV 120
Query: 121 DNFLRYIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE 180
DNFLRYIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE
Sbjct: 121 DNFLRYIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE 180
Query: 181 APDPQHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN 240
APDPQHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN
Sbjct: 181 APDPQHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN 240
Query: 241 GIVVYPSGEIY 251
GIVVYPSGEIY
Sbjct: 241 GIVVYPSGEIY 251
>pir||H71240 hypothetical protein PH0186 - Pyrococcus horikoshii
>gi|3256572|dbj|BAA29255.1| (AP000001) 251aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 251
Score = 488 bits (1243), Expect = e-137
Identities = 241/251 (96%), Positives = 248/251 (98%)
Query: 1 MMIMSYQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGE 60
M IM+YQPVRRVKSGIPGFDELIEGGFPEGTTVL+TGGTGTGKTTFAAQFIYKGAEEYGE
Sbjct: 1 MRIMAYQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE 60
Query: 61 PGVFVTLEERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNV 120
PGVFVTLEERA DLRREMA+FGWDFEKYEKEGKIAI+DGVSSVVGLPSEE+FVLEDRFNV
Sbjct: 61 PGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNV 120
Query: 121 DNFLRYIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE 180
DNFLRYIYRVVK INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTT+LTTE
Sbjct: 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180
Query: 181 APDPQHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN 240
APDPQHGKLSRYGIEEFIARGV+VLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN
Sbjct: 181 APDPQHGKLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN 240
Query: 241 GIVVYPSGEIY 251
GIVVYPSGEIY
Sbjct: 241 GIVVYPSGEIY 251
>gi|11499038 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448143|pir||B69430 conserved hypothetical protein
AF1443 - Archaeoglobus fulgidus
>gi|2649128|gb|AAB89805.1| (AE001004) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 248
Score = 208 bits (525), Expect = 4e-53
Identities = 106/243 (43%), Positives = 147/243 (59%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
+ RV +GIPGFDEL GG + L++G +G+GKT FA Q++ G E+Y EPGVFV E
Sbjct: 5 LERVPTGIPGFDELCSGGLLRDRSYLVSGPSGSGKTIFAMQYLVNGIEKYNEPGVFVATE 64
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
ER LR TFGWD EKYE E +AI+D S+ +GLPS+ER++ F+ + L I
Sbjct: 65 ERPQHLREHFLTFGWDLEKYEDENMLAIVDATSTKIGLPSDERYIDVRPFDTRSLLDQII 124
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
+ I A+R V+DS SI + + K R LLK++T + +G+T++LT E + K
Sbjct: 125 TIQDEIGARRAVVDSTTSIGFTISDPAKFRVELLKISTTMEILGLTSILTCEVVEGGGDK 184
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSG 248
+SR+G+E F+ G +VL R + I KMR T HS K +PFEI NGIVVY
Sbjct: 185 ISRFGVENFVVEGTIVLYYTRIENTRVRSIEIFKMRGTNHSSKIHPFEITENGIVVYSKE 244
Query: 249 EIY 251
E++
Sbjct: 245 EVF 247
>pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (strain Orsay)
>gi|5457691|emb|CAB49182.1| (AJ248283) recombinase
related [Pyrococcus abyssi]
Length = 247
Score = 192 bits (482), Expect = 4e-48
Identities = 96/238 (40%), Positives = 154/238 (64%), Gaps = 6/238 (2%)
Query: 10 RRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69
RR+K+GIPG D+++ GG PE VL++GG GTGKT F+ QF++ G + GEPG++V LEE
Sbjct: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEE 61
Query: 70 RASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSE-ERFVLEDRFNVDNFLRYIY 128
+R+ MA FGWD KYE+EG A++D ++ +G E E++++ D ++ F+ +
Sbjct: 62 HPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 121
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
+ ++ INAKR+V+DS+ + L + + R ++L+L +L G T++ ++ + G
Sbjct: 122 QAIRDINAKRVVVDSVTT--LYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG- 178
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246
G+E + G++ LDL E + ELKR +++ KMR T HSM+++PFEI GIVVYP
Sbjct: 179 FGGPGVEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
>pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii
>gi|3256673|dbj|BAA29356.1| (AP000001) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 188 bits (473), Expect = 5e-47
Identities = 94/238 (39%), Positives = 154/238 (64%), Gaps = 6/238 (2%)
Query: 10 RRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69
RRVK+GIPG DE++ GG PE VL++GG GTGKT F+ QF++ G + GEPG++V LEE
Sbjct: 8 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE 66
Query: 70 RASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSE-ERFVLEDRFNVDNFLRYIY 128
+R+ MA FGWD + YE++G A++D ++ +G E E++++ D ++ F+ +
Sbjct: 67 HPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 126
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
+ ++ INAKR+V+DS+ + L + + R ++L+L +L G T++ ++ + G
Sbjct: 127 QAIRDINAKRVVVDSVTT--LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERG- 183
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246
G+E + G++ LDL E + ELKR +++ KMR T HSM+++PF+I GI+VYP
Sbjct: 184 FGGPGVEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYP 240
>pir||H72384 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980874|gb|AAD35457.1|AE001717_3 (AE001717)
conserved hypothetical protein [Thermotoga maritima]
Length = 253
Score = 187 bits (471), Expect = 8e-47
Identities = 100/240 (41%), Positives = 152/240 (62%), Gaps = 6/240 (2%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
++RVK+GIPG DE++ GG PE VLI+GG GTGKT F+ QFI+ G + GEPG++V LE
Sbjct: 13 IKRVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGL-QMGEPGIYVALE 71
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSE-ERFVLEDRFNVDNFLRYI 127
E +++ M FGW+ + +EKEGK AI+D + +G +E E++V+ D +V +
Sbjct: 72 EHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVRDIDDVRELAEVL 131
Query: 128 YRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHG 187
R V+ AKR+VIDS+ + L + + R ++ +L IL +G T+L ++ + G
Sbjct: 132 KRAVRETQAKRVVIDSVTT--LYITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEKG 189
Query: 188 KLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPS 247
G+E + G++ LDL E + ELKR +++ KMR T HSM+++PFEI GIV+YPS
Sbjct: 190 -FGGPGVEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIYPS 247
>pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (strain K1)
>gi|5105190|dbj|BAA80504.1| (AP000061) 251aa long
hypothetical protein [Aeropyrum pernix]
Length = 251
Score = 178 bits (448), Expect = 4e-44
Identities = 96/242 (39%), Positives = 149/242 (60%), Gaps = 6/242 (2%)
Query: 6 YQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65
Y V RVK+GIPG D+++ GG P VL++GG GTGK+ F+ Q+++ G E GEPGVFV
Sbjct: 2 YSLVDRVKTGIPGMDDILYGGIPRRNVVLLSGGPGTGKSIFSYQYLWNGLRE-GEPGVFV 60
Query: 66 TLEERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVG-LPSEERFVLEDRFNVDNFL 124
LEE +R MA FGWD +YE++G A++D +S +G +ER+V+ D +V +
Sbjct: 61 ALEEHPVQVRINMAQFGWDVREYERQGLFAVVDAFTSGIGEAAKKERYVVTDPEDVGLLI 120
Query: 125 RYIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDP 184
+ ++ + AKR+ +DS+ + L L + R ++ L +L +G T++L ++
Sbjct: 121 DVLKEAIRDVGAKRVAVDSVST--LYLAKPVLARRTVMLLKRVLSGLGTTSILVSQVSVT 178
Query: 185 QHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVV 244
+ G G+E A G++ LDL E + EL R ++I KMR T+HSM+++PFEI GI+V
Sbjct: 179 ERG-FGGPGVEH-AADGIIRLDLDEVDGELVRSLIIWKMRGTKHSMRRHPFEITDKGIIV 236
Query: 245 YP 246
YP
Sbjct: 237 YP 238
>pir||F64469 hypothetical protein MJ1359 - Methanococcus jannaschii
>gi|1592003|gb|AAB99368.1| (U67576) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 242
Score = 178 bits (446), Expect = 7e-44
Identities = 93/239 (38%), Positives = 143/239 (58%), Gaps = 5/239 (2%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
++RVK+GIPG DE++ GG PE VL++GG GTGK+ F QF+YKG +Y EP + V LE
Sbjct: 1 MKRVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVDYNEPSILVALE 60
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSE-ERFVLEDRFNVDNFLRYI 127
E +R M FGWD K E+EGK AIID + +G ++ E++V+ D + + +
Sbjct: 61 EHPVQIRENMRQFGWDIRKLEEEGKFAIIDAFTYGIGSAAKREKYVVNDPNDERELIDVL 120
Query: 128 YRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHG 187
+ I AKR+ IDS+ + L + + R + L ++ +G T + T++ + G
Sbjct: 121 KTAINDIGAKRIGIDSVTT--LYINKPMLARRTVFLLKRVISGLGCTAIFTSQISVGERG 178
Query: 188 KLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246
G+E + G++ LDL E + ELKR +++ KMR T HS+K++PF+I GI+VYP
Sbjct: 179 -FGGPGVEHAV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSLKRHPFDITNEGIIVYP 235
>pir||T44269 hypothetical protein KaiC [imported] - Synechococcus sp. (strain
PCC 7942) >gi|4156230|dbj|BAA37103.1| (AB010691) KaiC
[Synechococcus sp.]
Length = 519
Score = 164 bits (410), Expect = 1e-39
Identities = 86/243 (35%), Positives = 141/243 (57%), Gaps = 7/243 (2%)
Query: 6 YQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65
+Q + ++++ I GFD++ GG P G + L++G +GTGKT F+ QF+Y G E+ EPGVFV
Sbjct: 15 HQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74
Query: 66 TLEERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLR 125
T EE D+ + +FGWD K EGK+ I+D P E + F++ +
Sbjct: 75 TFEETPQDIIKNARSFGWDLAKLVDEGKLFILD------ASPDPEGQEVVGGFDLSALIE 128
Query: 126 YIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQ 185
I ++ A+R+ IDS+ S+ + + +R L +L L ++G TT++TTE + +
Sbjct: 129 RINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE-E 187
Query: 186 HGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245
+G ++RYG+EEF++ VV+L + +R + I K+R T H +YPF I +GI ++
Sbjct: 188 YGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIF 247
Query: 246 PSG 248
P G
Sbjct: 248 PLG 250
Score = 70.6 bits (170), Expect = 2e-11
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 16/231 (6%)
Query: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
RV SG+ DE+ GGF + + +L TG TGTGKT ++F+ + A E + EE
Sbjct: 262 RVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFV-ENACANKERAILFAYEES 320
Query: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
+ L R ++G DFE+ E++ + I+ GL ++ L+ I
Sbjct: 321 RAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL--------------EDHLQIIKSE 366
Query: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLS 190
+ R+ IDS+ ++A R R+ ++ + + +T L T +
Sbjct: 367 INDFKPARIAIDSLSALA-RGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSI 425
Query: 191 RYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNG 241
I +++L E E+ R + + KMR + H F I G
Sbjct: 426 TDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKG 476
>gb|AAK42049.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 280
Score = 157 bits (393), Expect = 1e-37
Identities = 88/237 (37%), Positives = 139/237 (58%), Gaps = 6/237 (2%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
++RVK+ IPG DE++ GG PE VL++GG GTGK+ QF+Y G + GE GVF+ LE
Sbjct: 1 MKRVKTYIPGLDEILYGGIPERHIVLVSGGPGTGKSILGKQFLYNGLTK-GEGGVFIALE 59
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVG-LPSEERFVLEDRFNVDNFLRYI 127
E +RR F WD KYE+EGK AIID + +G + E++V++ +V I
Sbjct: 60 EHPVSVRRSFEHFKWDVRKYEREGKFAIIDTFTGGIGNVAQREKYVVKSIDDVKELSENI 119
Query: 128 YRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHG 187
+K INA R+V+DS+ + L L + R ++++L ++ +G T + ++ + G
Sbjct: 120 RAAIKDINATRIVVDSVST--LYLTKPAMARSIVMQLKRVISGLGCTAIFVSQVSVGERG 177
Query: 188 KLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVV 244
G+E + G++ LDL E + R ++I KMR+T+ SM ++P +I NGI+V
Sbjct: 178 -FGGPGVEHAV-DGIIRLDLDEVEGVMYRSIIIWKMRDTKISMVRHPMDITDNGIIV 232
>pir||S76478 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653695|dbj|BAA18607.1| (D90915) hypothetical
protein [Synechocystis sp.]
Length = 505
Score = 157 bits (392), Expect = 2e-37
Identities = 87/243 (35%), Positives = 139/243 (56%), Gaps = 8/243 (3%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
+ ++++GIPGFD L +GG P G LI G G+ KT FA+QF+ +G + GE GVFVT E
Sbjct: 9 IEKLETGIPGFDFLSDGGLPLGRATLIAGTAGSAKTIFASQFLVEGIQR-GENGVFVTFE 67
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E LR+ M FGWD +++E EGK +D +R ++ +++ + I
Sbjct: 68 EPPKALRKNMRGFGWDIQQWENEGKWVFVDASPQ-----PGDRPIVSGEYDLGALIARIE 122
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
V+ A R+ +DS+ +I L + ++R L +L + L E+GVT ++T E + ++G+
Sbjct: 123 HAVRKYKASRISLDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAIMTAERVE-EYGE 181
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFE-IGPNGIVVYPS 247
+SRYG+EEF+A VV++ + + +R + I K R T H ++PF I GIV+ P
Sbjct: 182 ISRYGVEEFVADNVVIVRNVLADEKRRRTIEILKYRGTDHQKGEFPFTIINKKGIVIIPL 241
Query: 248 GEI 250
I
Sbjct: 242 SAI 244
Score = 80.0 bits (194), Expect = 3e-14
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 16/232 (6%)
Query: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
R+ SG D + GF + +L++G TGTGKT +F+ G GE + EE
Sbjct: 254 RITSGSEELDRMCGSGFFRDSIILVSGATGTGKTLMVTEFM-DGGVANGERCLVFAFEES 312
Query: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
L R +G DF++ EKEGK+ ++ N++N L + +
Sbjct: 313 REQLIRNATGWGVDFKQMEKEGKLKVVCRYPETT--------------NLENHLIMMKDI 358
Query: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLS 190
++ R+ +DS+ ++ R+ + RE ++ L + + + + L T+ P+ G
Sbjct: 359 IQEFKPNRVAVDSLSALE-RVSTLKSFREFIIGLTSFIKQQEIGGLFTSTTPNLLGGASI 417
Query: 191 RYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGI 242
I +++L E E++R + + KMR + H F I G+
Sbjct: 418 TDAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFSIDHQGM 469
>pir||S76850 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653852|dbj|BAA18762.1| (D90917) hypothetical
protein [Synechocystis sp.]
Length = 519
Score = 155 bits (387), Expect = 6e-37
Identities = 82/240 (34%), Positives = 138/240 (57%), Gaps = 7/240 (2%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
V+++++ I GFDE+ GG P G T L++G +GTGKT A QF+Y+G + PG+F+T E
Sbjct: 19 VQKIRTVIEGFDEITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYQGIHHFDYPGLFITFE 78
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E SD+ +FGWD ++ +GK+ I+D P E + F++ + I
Sbjct: 79 ESPSDIIENAYSFGWDLQQLIDDGKLFILD------ASPDPEGQEVVGTFDLSALIERIQ 132
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
V+ AK + IDS+ ++ + + +R + +L L ++ VT+++TTE + ++G
Sbjct: 133 YAVRKYKAKLVSIDSVTAVFQQYDAASVVRREIFRLVARLKQLQVTSIMTTERVE-EYGP 191
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSG 248
++R+G+EEF++ VVVL + +R V I K+R T H +YPF I +GI ++P G
Sbjct: 192 IARFGVEEFVSDNVVVLRNVLEGERRRRTVEILKLRGTTHMKGEYPFTITHDGINIFPLG 251
Score = 69.9 bits (168), Expect = 3e-11
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 16/231 (6%)
Query: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
R+ SG+ DE+ GGF + + +L TG TGTGKT ++F+ +G + E + EE
Sbjct: 263 RISSGVQTLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLQEGCRQ-RERAILFAYEES 321
Query: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
+ L R +++G DFE+ E +G + ++ GL ++ L+ I
Sbjct: 322 RAQLSRNASSWGIDFEEMEHKGLLKLLCTYPESAGL--------------EDHLQMIKSE 367
Query: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLS 190
+ R+ IDS+ ++A R R+ ++ + + +T T
Sbjct: 368 ISEFKPSRIAIDSLSALA-RGVTNNAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGAHSI 426
Query: 191 RYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNG 241
I +++L E E+ R + + KMR + H + I +G
Sbjct: 427 TESHISTITDTILMLQYVEIRGEMSRALNVFKMRGSWHDKGIREYSISHDG 477
>gb|AAG01686.1|AF222602_1 (AF222602) KaiC [Nodularia PCC73104]
Length = 269
Score = 150 bits (374), Expect = 2e-35
Identities = 79/240 (32%), Positives = 135/240 (55%), Gaps = 7/240 (2%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
V ++++ I GFD++ GG P G T L++G +GTGKT F+ QF+Y G EPGVFVT E
Sbjct: 17 VEKIRTMIEGFDDISHGGLPVGRTTLVSGTSGTGKTLFSLQFLYNGITRSDEPGVFVTFE 76
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E SD+ + FGW+ ++ EGK+ I+D P E + F++ + +
Sbjct: 77 ESPSDIIKNAQIFGWNLQRLIDEGKLFILD------ASPDPEGQDIVGNFDLSALIERLQ 130
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
++ A+R+ IDSI ++ + E +R + +L L ++ VTT++TTE + ++G
Sbjct: 131 YAIRKYKAQRVSIDSITAVFQQYEAMGVVRREIFRLVARLKQLYVTTIITTERXE-EYGS 189
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSG 248
++ +G+EEF++ VV++ + +R + I K+R T H +YP I G+ ++P G
Sbjct: 190 VASFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPSTITNEGVNIFPLG 249
>gb|AAG01690.1|AF222605_1 (AF222605) KaiC [Cylindrospermum PCC7417]
Length = 269
Score = 149 bits (372), Expect = 3e-35
Identities = 79/240 (32%), Positives = 135/240 (55%), Gaps = 7/240 (2%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
V ++++ I GFD++ GG P G T L++G +GTGKT + QF+Y G + E GVFVT E
Sbjct: 17 VEKIRTMIEGFDDISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITCFDEAGVFVTFE 76
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E SD+ + FGW+ + +EGK+ I+D P E + F++ + +
Sbjct: 77 ESPSDIIKNANIFGWNLHRLIEEGKLFILD------ASPDPEGQDIVGNFDLSALIERLQ 130
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
++ AKR+ IDSI ++ + E +R + +L L ++ VTT++TTE + ++G
Sbjct: 131 YAIRKYKAKRVSIDSITAVFQQYEAMGVVRREIFRLVARLKQLSVTTIITTERSE-EYGP 189
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSG 248
++ +G+EEF++ VV++ + +R + I K+R T H +YPF I G+ ++P G
Sbjct: 190 VASFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTITNAGVNIFPLG 249
>pir||S75060 conserved hypothetical protein sll1595 - Synechocystis sp. (strain
PCC 6803) >gi|1653005|dbj|BAA17922.1| (D90910)
hypothetical protein [Synechocystis sp.]
Length = 568
Score = 140 bits (349), Expect = 2e-32
Identities = 86/233 (36%), Positives = 125/233 (52%), Gaps = 9/233 (3%)
Query: 14 SGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASD 73
+GI GFDE+ GG P+G LI G G GKT F +F+ +GA EYGEPGV V+ EE A +
Sbjct: 15 TGIQGFDEITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVEYGEPGVLVSFEESAKE 74
Query: 74 LRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKT 133
+ + +A+ GW+ + E KI I + + LE F+R Y + K
Sbjct: 75 IIQNVASLGWNLQDLVAEEKILIDHIYVEASEIQETGEYDLEAL-----FIRLGYAINK- 128
Query: 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYG 193
I AKR+++D+I + LE +R L +L L + GVT ++T E D L+R G
Sbjct: 129 IGAKRILLDTIEVLFSGLENTNIVRAELRRLFHWLKQKGVTAVITGERGDK---NLTRQG 185
Query: 194 IEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246
+EE+++ V+ LD + R + + K R +RHS +YPF I NGI V P
Sbjct: 186 LEEYVSDCVIKLDQKTVEEVATRTIQVVKYRGSRHSNNEYPFLIEENGISVLP 238
>gb|AAG01689.1|AF222604_1 (AF222604) KaiC [Geitlerinema PCC7105]
Length = 198
Score = 131 bits (326), Expect = 9e-30
Identities = 72/202 (35%), Positives = 115/202 (56%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T L++G +GTGKT FA QFIY G + EPGVFVT EE +DL + +FGWD
Sbjct: 3 GGLPRGRTTLVSGTSGTGKTLFAIQFIYNGITYFNEPGVFVTFEESPTDLIKNAQSFGWD 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
+ EGK+ I+D P E + F++ + I ++ AKR+ IDS+
Sbjct: 63 LQGLVDEGKLFILD------ASPDPEGQDVVGNFDLSALIERIQYGIRKYKAKRVSIDSV 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + + IR + +L L ++G TT++TTE + ++G ++R+G+EEF++ VV+
Sbjct: 117 TAVFQQYDAAPVIRREIFRLVARLKQLGATTVMTTERIE-EYGPVARFGVEEFVSDNVVI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTIEILKLRGT 197
>gb|AAG01688.1|AF222603_1 (AF222603) KaiC [Chlorogloeopsis fritschii]
Length = 198
Score = 127 bits (315), Expect = 2e-28
Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T L++G +GTGKT F+ QF+Y G + +PGVFVT EE +D+ + FGWD
Sbjct: 3 GGLPVGRTTLVSGTSGTGKTLFSLQFLYNGISYFDDPGVFVTFEESPNDIIKNAHIFGWD 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
++ +EGK+ I+D P E + F++ + + ++ AKR+ IDSI
Sbjct: 63 LQRLIEEGKLFILD------ASPDPEGQDIVGNFDLSALIERLQYAIRKYKAKRVSIDSI 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + E +R + +L L ++ VTT++TTE + ++G ++ YG+EEF++ VV+
Sbjct: 117 TAVFQQYEAVGVVRREIFRLVARLKQLNVTTIITTERTE-EYGPVACYGVEEFVSDNVVI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTMEILKLRGT 197
>gb|AAG02174.1|AF239752_1 (AF239752) KaiC [Chroococcidiopsis thermalis]
Length = 198
Score = 125 bits (311), Expect = 5e-28
Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T L +G +GTGKT F+ QF+Y G + EPGVFVT EE SD+ + +FGW+
Sbjct: 3 GGLPLGRTTLFSGTSGTGKTLFSVQFLYNGILFFDEPGVFVTFEESPSDIIKNAYSFGWN 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
K +EGK+ I+D P E + F++ + + + A+R+ IDSI
Sbjct: 63 LPKLIEEGKLFILD------ASPDPEGQEVIGNFDLSALIERLQYAIHKYKARRVAIDSI 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + E +R + +L L ++GVTT++TTE + ++G ++ +G+EEF+A V +
Sbjct: 117 TAVFQQYEAASVVRREIFRLVARLKQIGVTTIITTERTE-EYGAIASFGVEEFVADNVAI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTMEILKLRGT 197
>gb|AAG01684.1|AF222600_1 (AF222600) KaiC [Scytonema PCC7110]
Length = 198
Score = 124 bits (308), Expect = 1e-27
Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T L++G +GTGKT F+ QF+Y G + E GVFVT EE SD+ + FGW+
Sbjct: 3 GGLPVGRTTLVSGTSGTGKTLFSLQFLYNGISYFDEAGVFVTFEESPSDIIKNACIFGWN 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
++ +GK+ I+D P E + F++ + + ++ AKR+ IDSI
Sbjct: 63 LQRLIDDGKLFILD------ASPDPEGQDVVGNFDLSALIERLQYAIRKYKAKRVSIDSI 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + E +R + +L L ++ VTTL+TTE D ++G ++ +G+EEF++ VV+
Sbjct: 117 TAVFQQYEAVGVVRREIFRLVARLKQLSVTTLITTERTD-EYGPVACFGVEEFVSDNVVI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTIEILKLRGT 197
>gb|AAG02175.1|AF239753_1 (AF239753) KaiC [Nostoc muscorum]
Length = 198
Score = 123 bits (305), Expect = 2e-27
Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T LI+G +GTGKT + QF+Y G + EPGVFVT EE SD+ + FGW+
Sbjct: 3 GGLPIGRTTLISGTSGTGKTLLSLQFLYNGITYFDEPGVFVTFEESPSDIIKNAHIFGWN 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
+ +EGK+ I+D P E + F++ + + ++ AKR+ IDSI
Sbjct: 63 LPRLLEEGKLFILD------ASPDPEGQDIVGNFDLSALIERLQYAIRKYKAKRVSIDSI 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + E +R + +L L ++ VTT++TTE + ++G ++ +G+EEF++ VV+
Sbjct: 117 TAVFQQYEAMGVVRREIFRLVARLKQLNVTTVITTERSE-EYGPVASFGVEEFVSDNVVI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTIEILKLRGT 197
>gb|AAG02177.1|AF239755_1 (AF239755) KaiC [Gloeobacter violaceus]
Length = 198
Score = 122 bits (304), Expect = 3e-27
Identities = 68/202 (33%), Positives = 112/202 (54%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T L++G +GTGKT F+ QF+Y G + E GVFVT EE SD+ + FGW+
Sbjct: 3 GGLPVGRTTLVSGTSGTGKTLFSLQFLYNGISYFDEAGVFVTFEESPSDIIKNACIFGWN 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
++ +GK+ I+D P E + F++ + + ++ AKR+ IDSI
Sbjct: 63 LQRLIDDGKLFILD------ASPDPEGQDVVGNFDLSALIERLQYAIRKYKAKRVSIDSI 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + E +R + +L L ++ VTTL+TTE D ++G ++ G+EEF++ VV+
Sbjct: 117 TAVFQQYETVGVVRREIFRLVARLKQLSVTTLITTERTD-EYGPVACVGVEEFVSDNVVI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTIEILKLRGT 197
>gb|AAG01685.1|AF222601_1 (AF222601) KaiC [Xenococcus PCC7305]
>gi|9931432|gb|AAG02176.1|AF239754_1 (AF239754) KaiC
[Calothrix parietina]
Length = 198
Score = 120 bits (298), Expect = 2e-26
Identities = 65/202 (32%), Positives = 112/202 (55%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG PEG T L++G +GTGKT A QF+Y G + + PGVFVT EE D+ + +FGWD
Sbjct: 3 GGLPEGRTTLVSGTSGTGKTLLALQFLYHGIKYFDYPGVFVTFEESPQDVIKNAYSFGWD 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
+ + GK+ I+D P E + F++ + I + AK + IDS+
Sbjct: 63 LQNLVERGKLFILD------ASPDPEGQEVVGNFDLSALIERIQYAINKYKAKLVSIDSV 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
++ + + +R + +L L ++ VT+++TTE + ++G ++R+G+EEF++ VV+
Sbjct: 117 TAVFQQYDAASVVRREIFRLVARLKQLKVTSIMTTERIE-EYGPVARFGVEEFVSDNVVI 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 VRNVLEGERRRRTIEILKLRGT 197
>gb|AAG20092.1| (AE005088) circadian regulator; KaiC [Halobacterium sp. NRC-1]
Length = 218
Score = 116 bits (288), Expect = 2e-25
Identities = 74/232 (31%), Positives = 120/232 (50%), Gaps = 16/232 (6%)
Query: 22 LIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATF 81
+++GG PE + ++ G GTGKTTF QF+++ GE VF+TLEE + +
Sbjct: 1 MVQGGVPERSLLVAVGEAGTGKTTFGLQFLHEALSN-GERAVFITLEESRGRVIQSADEK 59
Query: 82 GWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVI 141
GW F ++ G +A++D +E ++ + + R+V+ A RLV+
Sbjct: 60 GWAFSEHADRGNLAVVDIDP------------IEMANSLTSIRNELPRLVEEFGASRLVL 107
Query: 142 DSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARG 201
DS+ + + +++ R + T L E GVTT+LT+EA + + SRYG+ E++
Sbjct: 108 DSVSLLEMMYDDQSTRRTEIYDFTTALKEAGVTTMLTSEASE-DNPFASRYGVIEYLTDA 166
Query: 202 VVVLDL--QEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSGEIY 251
VVVL E E + V I+K+R+ HS + P+EI GI VY I+
Sbjct: 167 VVVLRYIRPEDFRETRLAVEIQKIRDANHSRETKPYEITHEGISVYRQANIF 218
>gi|11498064 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483012|pir||D69306 conserved hypothetical protein
AF0452 - Archaeoglobus fulgidus
>gi|2650173|gb|AAB90781.1| (AE001073) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 443
Score = 115 bits (285), Expect = 5e-25
Identities = 84/242 (34%), Positives = 127/242 (51%), Gaps = 24/242 (9%)
Query: 12 VKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71
VK+GI GFD++ GGF G +LI G G+GKTTF A+F+Y+GA +GE G+++++ E
Sbjct: 4 VKTGIEGFDDIF-GGFYRGQIILIAGNPGSGKTTFCAKFLYEGARRFGENGLYISIGESK 62
Query: 72 SDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVV 131
+ M G DFEK EK G ++ ++ P+ E +++ R + +
Sbjct: 63 EEFYEYMKKLGMDFEKLEKTGSFKYVEMLA-----PTSEDALMQ-------LSRELTKNA 110
Query: 132 KTINAKRLVIDSI-PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAP--DPQHGK 188
+ A R+VIDSI P +++ E R I LK TI E+ L+T E P + + G+
Sbjct: 111 LELKATRIVIDSISPILSMNPETARAILHNALK--TISRELKSVVLMTEEMPIGETRIGQ 168
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELK-RYVLIRKMRETRHSMKKYPFEIG-PNGIVVYP 246
GIEEF+ GV+VL L+ R + + K+R Y FEIG P+G+ V
Sbjct: 169 ----GIEEFVVDGVIVLRLEVPEAGAPVRTMSVLKLRGKPLDRAVYNFEIGPPSGVRVLM 224
Query: 247 SG 248
G
Sbjct: 225 HG 226
>gb|AAG01683.1|AF222599_1 (AF222599) KaiC [Chroococcidiopsis PCC6712]
Length = 198
Score = 115 bits (284), Expect = 7e-25
Identities = 64/202 (31%), Positives = 108/202 (52%), Gaps = 7/202 (3%)
Query: 25 GGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERASDLRREMATFGWD 84
GG P G T L++G +GTGKT A QF+Y G + + PGVFVT EE D+ +FGWD
Sbjct: 3 GGLPIGRTTLVSGTSGTGKTLLAIQFLYHGIKFFDYPGVFVTFEESPKDIITNARSFGWD 62
Query: 85 FEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVVKTINAKRLVIDSI 144
+ +GK+ I+D P E + F+ + I + AK + IDS+
Sbjct: 63 LQSLIDQGKMFILD------ASPDPEGQEVVGNFDFSALIERIQYAINKYKAKLVSIDSV 116
Query: 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSRYGIEEFIARGVVV 204
+I + + +R + +L L + VT+++TTE + ++G ++R+G+EEF++ V++
Sbjct: 117 TAIFQQYDAASVVRREIFRLVARLKLLNVTSIMTTERVE-EYGPIARFGVEEFVSDNVII 175
Query: 205 LDLQEKNIELKRYVLIRKMRET 226
+ + +R + I K+R T
Sbjct: 176 IRNVLEGERRRRTIEILKLRGT 197
>gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 262
Score = 111 bits (275), Expect = 8e-24
Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 26/245 (10%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
V R+ +GI FD+LI+GG P+G + +TG GTGKT F+ FI KG + G+P ++VT E
Sbjct: 2 VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTE 60
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E + R+ F WDFE+Y E K+ IID L E+ ED++++ N L
Sbjct: 61 ESRDSIIRQAKQFNWDFEEY-IEKKLIIID------ALMKEK----EDQWSLVN-LTPEE 108
Query: 129 RVVKTINAK--------RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE 180
V K I AK RLVIDS+ AL L++ R++ L +L + T T++
Sbjct: 109 LVNKVIEAKQKLGYGKARLVIDSVS--ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQ 166
Query: 181 APDPQHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEI-GP 239
+ +G+E +A G++ +N EL RY+LI KMR+T H + +I
Sbjct: 167 YAITT-SQAFGFGVEH-VADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNG 224
Query: 240 NGIVV 244
GIV+
Sbjct: 225 KGIVL 229
>pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii
>gi|3257244|dbj|BAA29927.1| (AP000003) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 111 bits (275), Expect = 8e-24
Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 16/234 (6%)
Query: 10 RRVKSGIPGFDE-LIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
+ K GI FD+ ++ GGFP G+ +LI G GTGKT +A ++Y GA+++GE G++++L
Sbjct: 30 KMTKFGIEYFDKYILRGGFPNGSMILIVGEPGTGKTILSATYLYNGAKKFGEKGMYISLA 89
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E + + M G DFE+ E G ID V + V+ + +
Sbjct: 90 ETKWEFYKGMKQLGMDFEELENNGLFKFID-------------LVTVSKDAVEKEIELLM 136
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
+ + + KR+VIDSI L E+ + L + T LL E P K
Sbjct: 137 SEISSFHPKRIVIDSISVFTQLLGAEKTRIFLHTILGRFIKANDATALLIAE--KPIGSK 194
Query: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGI 242
YG+EEF+ GV++L + +R + I KMR + +Y + I NGI
Sbjct: 195 TIGYGVEEFVVDGVIILKYKSFGEVTRRVMEIPKMRRRKIERAEYEYVITKNGI 248
Score = 78.8 bits (191), Expect = 6e-14
Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 31/241 (12%)
Query: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
++ +GI DE+++GG +G++VLI G TGTGKTTF+ F A + G ++T EE
Sbjct: 267 KITTGIERLDEMLDGGIYKGSSVLIVGMTGTGKTTFSLHFAIANALQ-GRKVAYITFEEP 325
Query: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
+ R +G E E G+ I +V E + V +++ I +
Sbjct: 326 IDQIIRSAKNYGMPIE--EVLGRNLKIFA------------WVPESKTPVHTYIK-IKEI 370
Query: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLT-TEAPDPQHGKL 189
++ + L+IDS+ ++ L +E+++ ++L L + E +TT T TE
Sbjct: 371 IEEFKPEALIIDSLTALREHL-DEKELTKMLRYLQLLTKEKRITTYFTFTEE-------- 421
Query: 190 SRYGIEEFIARG-----VVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVV 244
+++ + F +++L + +N ++++ + I K R + HS K + +EI G+ +
Sbjct: 422 AKFDVVPFTGASTMVDVIILLKYEIENEKIEKRLAIIKARGSNHSRKIHKYEITNRGVEI 481
Query: 245 Y 245
Y
Sbjct: 482 Y 482
>pir||D69012 conserved hypothetical protein MTH1094 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622195|gb|AAB85583.1| (AE000880) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 470
Score = 106 bits (263), Expect = 2e-22
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 18/246 (7%)
Query: 4 MSYQPVRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGV 63
M ++ + + +GI G D + EGGFP G LI GG GTGKT A +F+ KGA YGEPGV
Sbjct: 1 MDFENIEKAPTGIKGLDMITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGV 60
Query: 64 FVTLEERASDLRREMATFGWDFEKYEKEGKIAIID---GVSSVVGLPSEERFVLEDRFNV 120
V+ +E +L + E+ EG + I D G+ G S E L
Sbjct: 61 MVSFDEAMENLIENFRSSDRLLERLIDEGLLFIEDASRGMDPDAGSYSLEALKLR----- 115
Query: 121 DNFLRYIYRVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE 180
+ ++ A+R+V+D + ++ E + I L +L L MGVT++ T+
Sbjct: 116 ------LEDAIRRTGARRVVLDKVDNLFDGTERQGMIGFELRELIRWLNGMGVTSVFTS- 168
Query: 181 APDPQHGKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPN 240
+G + +EE+I+ V+ L + R++ I K R + H + +YPF I
Sbjct: 169 ---GDYGGSPTHRLEEYISDCVIHLTHTFEGQVGTRHLRIVKYRGSGHGLNRYPFIITRR 225
Query: 241 GIVVYP 246
G ++P
Sbjct: 226 GASIFP 231
>gi|11497963 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430039|pir||G69293 conserved hypothetical protein
AF0351 - Archaeoglobus fulgidus
>gi|2650282|gb|AAB90883.1| (AE001080) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 226
Score = 105 bits (260), Expect = 5e-22
Identities = 76/243 (31%), Positives = 124/243 (50%), Gaps = 21/243 (8%)
Query: 12 VKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71
+K+GI G D ++ GG PEG V + G GTGKTT FIY+G + GE + ++ +E
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKN-GEACMIISFDEDE 60
Query: 72 SDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRVV 131
+ + + G D + + I ++ SE + LE + D + +V
Sbjct: 61 ESIIGDAKSVGMDLTAFGDKVHIVRLEA--------SEVKKSLE-KLESD-----LPEIV 106
Query: 132 KTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLSR 191
+++ R+++DSI S+ L ++ +L +L E G+T ++T+EA D S+
Sbjct: 107 RSLGVSRMLVDSI-SVLETLFDDAGRYSMLAAFRKMLKENGITAIITSEA-DKYQPNTSK 164
Query: 192 YGIEEFIARGVVVLDLQEKNIELKRYVL---IRKMRETRHSMKKYPFEIGPNGIVVYPSG 248
YGI E+I G++ L + K+ EL L + KMR +HS K P+ I +GIVVY
Sbjct: 165 YGILEYICDGMISLKVVRKS-ELDEPTLGLEVVKMRRVKHSRKPKPYIITDSGIVVYEEA 223
Query: 249 EIY 251
EI+
Sbjct: 224 EIF 226
>pir||E75070 recombinase related PAB0642 - Pyrococcus abyssi (strain Orsay)
>gi|5458378|emb|CAB49866.1| (AJ248286) RECOMBINASE
related [Pyrococcus abyssi]
Length = 240
Score = 95.6 bits (234), Expect = 5e-19
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 13/235 (5%)
Query: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
R+ +G+ G DELIEGG G LITG G+GKTTF F+ +GA + GE +V+L +
Sbjct: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIHK 65
Query: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
++ ++M F Y + K+ + D + V+ S + L I +
Sbjct: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYD-LGPVLWRESTRVPTWR------SVLSRIREI 118
Query: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLS 190
V+ RLVID + +I L+ + R L K L ++GVT L E + +
Sbjct: 119 VEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE-----MD 173
Query: 191 RYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245
+Y E F+ G+++L + R + I KMR TRH + G+VVY
Sbjct: 174 KYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
>pir||D71095 hypothetical protein PH1025 - Pyrococcus horikoshii
>gi|3257439|dbj|BAA30122.1| (AP000004) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 94.8 bits (232), Expect = 9e-19
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 13/235 (5%)
Query: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
R+ +G+ G DELIEGG G LITG G+GKTTF QF+ +GA GE +++L +
Sbjct: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMQFLLEGARR-GEKVAYISLIHK 65
Query: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
++ R+M F Y ++ + D + ++ S + + L I +
Sbjct: 66 PEEVVRDMVRFDPSVYVYVNNWRLILYD-LGPILWRESTKVPTWR------SVLSRIREI 118
Query: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLS 190
+ RLVID + +I L++ + R L K L +GVTT L E + L
Sbjct: 119 TENEKITRLVIDPLTAIDFPLQDPVEKRVELAKFVRSLENLGVTTYLIAEMVE-----LD 173
Query: 191 RYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245
+Y E ++ G+++L + R + I KMR T+H + G+VVY
Sbjct: 174 KYSEEHYLVSGIIMLHYFMHEGRMIRAIQIFKMRGTKHDPNLKLLKFTDQGLVVY 228
>pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (strain K1)
>gi|5104407|dbj|BAA79722.1| (AP000060) 726aa long
hypothetical protein [Aeropyrum pernix]
Length = 726
Score = 85.8 bits (209), Expect = 4e-16
Identities = 53/174 (30%), Positives = 89/174 (50%), Gaps = 10/174 (5%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
V R+++G+ GFD L+ GG P G V + G GTGKT F+ F Y+G E G+ ++VT E
Sbjct: 4 VERLRTGVEGFDPLVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVRE-GDKVIYVTTE 62
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E + ++ A FG D + EG+ +ID + + + LED +V++ + +
Sbjct: 63 ESRESVLKQAAMFGMDLGRAVDEGRAIVIDALLK----SRSDEWSLED-VSVESLVNKVL 117
Query: 129 RVVKTI--NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE 180
+ + RLV+DS+ A L++ R+ + +L TTLL ++
Sbjct: 118 EAKRALGYGRARLVVDSMS--AFWLDKPAMARKYSYMVKRVLYRWDFTTLLVSQ 169
>pir||C69157 recombinase - Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621505|gb|AAB84945.1| (AE000828) recombinase
[Methanobacterium thermoautotrophicum]
Length = 238
Score = 81.5 bits (198), Expect = 9e-15
Identities = 70/245 (28%), Positives = 121/245 (48%), Gaps = 16/245 (6%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
+ R +GI G D++I GG+P+G ++L+TG G+GKT QF + A G +++T E
Sbjct: 5 ISRTGTGIKGLDDII-GGYPQGRSILVTGDPGSGKTIMGLQFAIQSARS-GLKTIYITTE 62
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E +DLR + A+ GWD + GK++II G+S++ +E + +V LR I
Sbjct: 63 EDETDLRIQCASLGWDITDLLESGKLSII-GLSAMRARLTEAEISIGIE-SVKGNLRKIL 120
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQH-- 186
+ + + L+IDSI S +L + + R+ L L + +T ++ ++ +
Sbjct: 121 AEIPD-DTEVLIIDSIGSHTEKLTTD-EFRDQFDLLIYELKKRDITAMIILDSATSEEFN 178
Query: 187 --GKLSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVV 244
S YG I R +E+ ++ I KMR TR ++ P+ I +G+ V
Sbjct: 179 DIALYSVYGAIRLIKRENPYTGRRERVMD------IIKMRSTRTPIEFIPYIISDSGLEV 232
Query: 245 YPSGE 249
+ E
Sbjct: 233 IENPE 237
>pir||F69066 conserved hypothetical protein MTH1498 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622615|gb|AAB85973.1| (AE000910) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 244
Score = 72.2 bits (174), Expect = 6e-12
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 15/244 (6%)
Query: 9 VRRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
+ R+K GI G D+ FP G +VLITG G GKT F +F E G V++T E
Sbjct: 4 MERLKIGINGLDD--HRRFPMGRSVLITGEPGCGKTIFGLRFAISSCME-GYNTVYITAE 60
Query: 69 ERASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIY 128
E A+DL + +FGW+ ++ E++G + I+ ++ + +E ++ NF + I+
Sbjct: 61 EDANDLHIQANSFGWNTQELEEKGLLNFIE-LTGIRARITEAELSMDMDPMKGNFTKIIH 119
Query: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTE-APDPQHG 187
+ A+ +VIDS+ +L + R L L + G+T+++ + A +
Sbjct: 120 DIPP--EAEVVVIDSLGGYTAKL-TAYEFRNQFDLLVYELKQRGITSVIILDSATSKEFN 176
Query: 188 KLSRYGIEEFIARGVVVLDLQEKNI--ELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245
+L+ + + G + L +E +R + I KMR T+ ++ +EIG +
Sbjct: 177 ELALFSV-----YGAIKLGRRENPYTGRRERIMDIVKMRSTKTPLQFLTYEIGGEEGITI 231
Query: 246 PSGE 249
GE
Sbjct: 232 TEGE 235
>pir||F69178 conserved hypothetical protein MTH593 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621672|gb|AAB85099.1| (AE000841) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 233
Score = 71.0 bits (171), Expect = 1e-11
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 11 RVKSGIPGFDELIEG-GFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69
R+ SGI G DEL+ G PE T ++ G GK+ FA F GA E EP ++++ +
Sbjct: 4 RIPSGIRGLDELMGGASIPENTVTMVYGPPKVGKSIFAYGFAAGGA-EMDEPCLYISADY 62
Query: 70 RASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEE--RFVLEDRFNVDNFLRYI 127
SDL+R MA G D E Y ++ + +ID +SS+ G +E + N + + +
Sbjct: 63 GLSDLKRNMAVLGMDPESYLQKELLYVIDAISSISGPSGDEGSTYFSSSVHNPTDIMVKL 122
Query: 128 YRVVKTINAK----RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLT 178
++ I + R V+DS+ ++ + +E I VL + E G T ++T
Sbjct: 123 GVAIRNITNRYSMFRSVLDSLTTL-MAFNDEMLIVRVLTAYIMRIKEAGGTAVVT 176
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92467807
Number of Sequences: 2977
Number of extensions: 3987966
Number of successful extensions: 15675
Number of sequences better than 1.0e-10: 35
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15567
Number of HSP's gapped (non-prelim): 45
length of query: 251
length of database: 189,106,746
effective HSP length: 55
effective length of query: 196
effective length of database: 156,189,961
effective search space: 30613232356
effective search space used: 30613232356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)