BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0113 (PAB0113) DE:Hypothetical protein
(251 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75205 hypothetical protein PAB0113 - Pyrococcus abyssi (st... 500 e-141
pir||A71241 hypothetical protein PH0187 - Pyrococcus horikoshii ... 457 e-128
pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii ... 92 8e-18
pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (str... 89 5e-17
pir||H72384 conserved hypothetical protein - Thermotoga maritima... 83 2e-15
pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (str... 83 4e-15
pir||F64469 hypothetical protein MJ1359 - Methanococcus jannasch... 78 1e-13
gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfat... 73 3e-12
>pir||G75205 hypothetical protein PAB0113 - Pyrococcus abyssi (strain Orsay)
>gi|5457603|emb|CAB49094.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 500 bits (1273), Expect = e-141
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MENLGEEKIERTVERIPTGIIDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVG 60
MENLGEEKIERTVERIPTGIIDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVG
Sbjct: 1 MENLGEEKIERTVERIPTGIIDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVG 60
Query: 61 TPVIGVLVDISKYEFISNALDFGWEFTPYLDDRIILLDAYTQRLRKTPKFSFEDSIVGDL 120
TPVIGVLVDISKYEFISNALDFGWEFTPYLDDRIILLDAYTQRLRKTPKFSFEDSIVGDL
Sbjct: 61 TPVIGVLVDISKYEFISNALDFGWEFTPYLDDRIILLDAYTQRLRKTPKFSFEDSIVGDL 120
Query: 121 SNTINLLDAIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNR 180
SNTINLLDAIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNR
Sbjct: 121 SNTINLLDAIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNR 180
Query: 181 QVWILEMNSGIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEY 240
QVWILEMNSGIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEY
Sbjct: 181 QVWILEMNSGIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEY 240
Query: 241 TITSSGIRLLL 251
TITSSGIRLLL
Sbjct: 241 TITSSGIRLLL 251
>pir||A71241 hypothetical protein PH0187 - Pyrococcus horikoshii
>gi|3256573|dbj|BAA29256.1| (AP000001) 251aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 251
Score = 457 bits (1164), Expect = e-128
Identities = 220/251 (87%), Positives = 243/251 (96%)
Query: 1 MENLGEEKIERTVERIPTGIIDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVG 60
ME EEKIERTVER+PTGIID+LI+GGIP+GSV+LVIGDPKAGKSTFLTQFVYNQ+K+G
Sbjct: 1 MEEPIEEKIERTVERVPTGIIDELINGGIPRGSVVLVIGDPKAGKSTFLTQFVYNQIKLG 60
Query: 61 TPVIGVLVDISKYEFISNALDFGWEFTPYLDDRIILLDAYTQRLRKTPKFSFEDSIVGDL 120
PVIGVLVDISKYEFISNAL+FGWEFTPYLDD+IILLDAYTQRLRK PKFSFE++IVGDL
Sbjct: 61 VPVIGVLVDISKYEFISNALEFGWEFTPYLDDKIILLDAYTQRLRKAPKFSFEETIVGDL 120
Query: 121 SNTINLLDAIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNR 180
SNT+NLLDAIKDTTLKILS+ K+DG+VGF+SSMTPIFFETSKKEIYKFLEDLREFAHRNR
Sbjct: 121 SNTVNLLDAIKDTTLKILSSVKTDGVVGFISSMTPIFFETSKKEIYKFLEDLREFAHRNR 180
Query: 181 QVWILEMNSGIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEY 240
QVW+LEMNSGIEEPYVETMVKAIVDGIIEL+L EEGKTLKRY+RIYGMRRTAH+LDWIEY
Sbjct: 181 QVWVLEMNSGIEEPYVETMVKAIVDGIIELRLVEEGKTLKRYLRIYGMRRTAHRLDWIEY 240
Query: 241 TITSSGIRLLL 251
+ITS GI+L+L
Sbjct: 241 SITSQGIKLIL 251
>pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii
>gi|3256673|dbj|BAA29356.1| (AP000001) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 91.7 bits (224), Expect = 8e-18
Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
Query: 15 RIPTGI--IDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVGTPVIGVLVDISK 72
R+ TGI +D+++ GGIP+ +V+L+ G P GK+ F QF++N +K+G P I V ++
Sbjct: 9 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHP 68
Query: 73 YEFISNALDFGWEFTPYLDDRII-LLDAYTQRLRKTPKFSFEDSIVGDLSNTINLLDAIK 131
+ N FGW+ PY + + ++DA+T + K+ + +E IV DL++ ++ ++
Sbjct: 69 VQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKE--YEKYIVHDLTDIREFIEVLR 126
Query: 132 DTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRN-RQVWILEMNSG 190
I + +V V S+T ++ L+ R A +++ +++ G
Sbjct: 127 QAIRDI----NAKRVV--VDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 180
Query: 191 IEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEYTITSSGI 247
E + V+ VDGII L L E LKR + ++ MR T+H + + IT GI
Sbjct: 181 -ERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGI 236
>pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (strain Orsay)
>gi|5457691|emb|CAB49182.1| (AJ248283) recombinase
related [Pyrococcus abyssi]
Length = 247
Score = 88.9 bits (217), Expect = 5e-17
Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
Query: 15 RIPTGI--IDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVGTPVIGVLVDISK 72
RI TGI +DD++ GGIP+ +V+L+ G P GK+ F QF++N +++G P I V ++
Sbjct: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
Query: 73 YEFISNALDFGWEFTPYLDDRII-LLDAYTQRLRKTPKFSFEDSIVGDLSNTINLLDAIK 131
+ N FGW+ Y ++ + ++DA+T + K+ + +E IV DL++ ++ ++
Sbjct: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKE--YEKYIVHDLTDIREFIEVLR 121
Query: 132 DTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRN-RQVWILEMNSG 190
I + +V V S+T ++ L+ R A +++ +++ G
Sbjct: 122 QAIRDI----NAKRVV--VDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVG 175
Query: 191 IEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEYTITSSGI 247
E + V+ VDGII L L E LKR + ++ MR T+H + + IT GI
Sbjct: 176 -ERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
>pir||H72384 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980874|gb|AAD35457.1|AE001717_3 (AE001717)
conserved hypothetical protein [Thermotoga maritima]
Length = 253
Score = 83.5 bits (203), Expect = 2e-15
Identities = 62/240 (25%), Positives = 119/240 (48%), Gaps = 11/240 (4%)
Query: 11 RTVERIPTGI--IDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVGTPVIGVLV 68
+ ++R+ TGI +D+++ GGIP+ +++L+ G P GK+ F QF++N +++G P I V +
Sbjct: 11 KMIKRVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVAL 70
Query: 69 DISKYEFISNALDFGWEFTPY-LDDRIILLDAYTQRLRKTPKFSFEDSIVGDLSNTINLL 127
+ + N FGW P+ + + ++DA+T + + + E +V D+ + L
Sbjct: 71 EEHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAE--KEKYVVRDIDDVRELA 128
Query: 128 DAIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNRQVWILEM 187
+ +K + + T++ +V + S+T ++ + R + +
Sbjct: 129 EVLK----RAVRETQAKRVV--IDSVTTLYITKPAMARSIIFQLKRILSGLGCTSLFVSQ 182
Query: 188 NSGIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEYTITSSGI 247
S E+ + V+ VDGII L L E LKR + ++ MR T+H + + IT GI
Sbjct: 183 VSVTEKGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 242
>pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (strain K1)
>gi|5105190|dbj|BAA80504.1| (AP000061) 251aa long
hypothetical protein [Aeropyrum pernix]
Length = 251
Score = 82.7 bits (201), Expect = 4e-15
Identities = 68/238 (28%), Positives = 112/238 (46%), Gaps = 11/238 (4%)
Query: 13 VERIPTGI--IDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVGTPVIGVLVDI 70
V+R+ TGI +DD++ GGIP+ +V+L+ G P GKS F Q+++N ++ G P + V ++
Sbjct: 5 VDRVKTGIPGMDDILYGGIPRRNVVLLSGGPGTGKSIFSYQYLWNGLREGEPGVFVALEE 64
Query: 71 SKYEFISNALDFGWEFTPYLDDRII-LLDAYTQRLRKTPKFSFEDSIVGDLSNTINLLDA 129
+ N FGW+ Y + ++DA+T + + K E +V D + L+D
Sbjct: 65 HPVQVRINMAQFGWDVREYERQGLFAVVDAFTSGIGEAAK--KERYVVTDPEDVGLLIDV 122
Query: 130 IKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNRQVWILEMNS 189
+K+ + + + V + P+ + + + L L + QV + E
Sbjct: 123 LKEAIRDVGAKRVAVDSVSTLYLAKPVLARRTVMLLKRVLSGLGTTSILVSQVSVTE--R 180
Query: 190 GIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEYTITSSGI 247
G P VE DGII L L E L R + I+ MR T H + + IT GI
Sbjct: 181 GFGGPGVE----HAADGIIRLDLDEVDGELVRSLIIWKMRGTKHSMRRHPFEITDKGI 234
>pir||F64469 hypothetical protein MJ1359 - Methanococcus jannaschii
>gi|1592003|gb|AAB99368.1| (U67576) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 242
Score = 78.0 bits (189), Expect = 1e-13
Identities = 69/239 (28%), Positives = 112/239 (45%), Gaps = 12/239 (5%)
Query: 13 VERIPTGI--IDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVY-NQVKVGTPVIGVLVD 69
++R+ TGI +D+++ GGIP+ +V+L+ G P GKS F QF+Y V P I V ++
Sbjct: 1 MKRVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVDYNEPSILVALE 60
Query: 70 ISKYEFISNALDFGWEFTPYLDD-RIILLDAYTQRLRKTPKFSFEDSIVGDLSNTINLLD 128
+ N FGW+ ++ + ++DA+T + K E +V D ++ L+D
Sbjct: 61 EHPVQIRENMRQFGWDIRKLEEEGKFAIIDAFTYGIGSAAK--REKYVVNDPNDERELID 118
Query: 129 AIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNRQVWILEMN 188
+K I + V + P+ + + + + L A Q+ + E
Sbjct: 119 VLKTAINDIGAKRIGIDSVTTLYINKPMLARRTVFLLKRVISGLGCTAIFTSQISVGE-- 176
Query: 189 SGIEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEYTITSSGI 247
G P VE VDGII L L E LKR + ++ MR T+H L + IT+ GI
Sbjct: 177 RGFGGPGVE----HAVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSLKRHPFDITNEGI 231
>gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 262
Score = 73.4 bits (177), Expect = 3e-12
Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 15/240 (6%)
Query: 13 VERIPTGIID--DLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVGTPVIGVLVDI 70
V R+ TGI+D LI GGIP+G I + G+P GK+ F F+ ++ G P I V +
Sbjct: 2 VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61
Query: 71 SKYEFISNALDFGWEFTPYLDDRIILLDAYTQRLRKTPKFSFEDSIVGDLSNTINLLDAI 130
S+ I A F W+F Y++ ++I++DA + K ++S + +L N + ++A
Sbjct: 62 SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMK--EKEDQWSLVNLTPEELVNKV--IEAK 117
Query: 131 KDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRNRQVWILEMNSG 190
+ L K+ ++ VS++ ++K Y L ++ N ++ +
Sbjct: 118 QK-----LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW---NFTIYATSQYAI 169
Query: 191 IEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAH-KLDWIEYTITSSGIRL 249
V+ + DGII + L RY+ I MR+T H K W + GI L
Sbjct: 170 TTSQAFGFGVEHVADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVL 229
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90084615
Number of Sequences: 2977
Number of extensions: 3797955
Number of successful extensions: 14095
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 14087
Number of HSP's gapped (non-prelim): 9
length of query: 251
length of database: 189,106,746
effective HSP length: 55
effective length of query: 196
effective length of database: 156,189,961
effective search space: 30613232356
effective search space used: 30613232356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)