BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0114 (PAB0114) DE:Hypothetical protein
         (229 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75205 hypothetical protein PAB0114 - Pyrococcus abyssi (st...   464  e-130
pir||B71241 hypothetical protein PH0188 - Pyrococcus horikoshii ...   353  1e-96

>pir||H75205 hypothetical protein PAB0114 - Pyrococcus abyssi (strain Orsay)
           >gi|5457604|emb|CAB49095.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 229
           
 Score =  464 bits (1181), Expect = e-130
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MRQDVLYLSLSLVFLLLSNLLSSVEPKDILDASEGDLVEFSGVCGYSSGDFSILTDGKMS 60
           MRQDVLYLSLSLVFLLLSNLLSSVEPKDILDASEGDLVEFSGVCGYSSGDFSILTDGKMS
Sbjct: 1   MRQDVLYLSLSLVFLLLSNLLSSVEPKDILDASEGDLVEFSGVCGYSSGDFSILTDGKMS 60

Query: 61  IPVYAPLKVGKVYKVIGVYRNGGIKPREITNGSVELETIVGAYWFDYAPSILTPRRVYLK 120
           IPVYAPLKVGKVYKVIGVYRNGGIKPREITNGSVELETIVGAYWFDYAPSILTPRRVYLK
Sbjct: 61  IPVYAPLKVGKVYKVIGVYRNGGIKPREITNGSVELETIVGAYWFDYAPSILTPRRVYLK 120

Query: 121 YPINASPGDIVEVKGAFFGSKLVPVSYKKLGHIEEPKDGYPLEIEGRVVKGGNPSYVKWR 180
           YPINASPGDIVEVKGAFFGSKLVPVSYKKLGHIEEPKDGYPLEIEGRVVKGGNPSYVKWR
Sbjct: 121 YPINASPGDIVEVKGAFFGSKLVPVSYKKLGHIEEPKDGYPLEIEGRVVKGGNPSYVKWR 180

Query: 181 GRTIKVYLKDNASLETGSFVNVLGIVRVYGNKITMYAYNVTVIEHEGAD 229
           GRTIKVYLKDNASLETGSFVNVLGIVRVYGNKITMYAYNVTVIEHEGAD
Sbjct: 181 GRTIKVYLKDNASLETGSFVNVLGIVRVYGNKITMYAYNVTVIEHEGAD 229


>pir||B71241 hypothetical protein PH0188 - Pyrococcus horikoshii
           >gi|3256574|dbj|BAA29257.1| (AP000001) 233aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 233
           
 Score =  353 bits (895), Expect = 1e-96
 Identities = 170/228 (74%), Positives = 197/228 (85%), Gaps = 1/228 (0%)

Query: 1   MRQDVLYLSLSLVFLLLSNLLSSVEPKDILDASEGDLVEFSGVCGYSSGDFSILTDGKMS 60
           MR+DV+YL  SL+FL+LSN  S+VEPK IL+ASEGDLVEFSGVCGYSSGDFSILTDGK+S
Sbjct: 1   MRRDVIYLLASLLFLILSNFASNVEPKSILEASEGDLVEFSGVCGYSSGDFSILTDGKIS 60

Query: 61  IPVYAPLKVGKVYKVIGVYRNGGIKPREITNGSVELETIVGAYWFDYAPSILTPRRVYLK 120
           IPVY  L+VGKVYK++GVYRNGGIKPR+I NGS+ELE I GAYW DY+PSILTP+RVYLK
Sbjct: 61  IPVYEGLEVGKVYKIVGVYRNGGIKPRKIENGSLELEIIRGAYWVDYSPSILTPKRVYLK 120

Query: 121 YPI-NASPGDIVEVKGAFFGSKLVPVSYKKLGHIEEPKDGYPLEIEGRVVKGGNPSYVKW 179
           Y + N SPGDIVEV+G FFGSKLVPV Y+KLG I E +DGYPLEIEG VVKGGNP+YV W
Sbjct: 121 YELENVSPGDIVEVRGVFFGSKLVPVEYRKLGRIREARDGYPLEIEGLVVKGGNPAYVIW 180

Query: 180 RGRTIKVYLKDNASLETGSFVNVLGIVRVYGNKITMYAYNVTVIEHEG 227
             + IKVYL++N +L  G FV ++GIVRVYG+KITMYAYN TVI+ EG
Sbjct: 181 NDKKIKVYLRNNQTLVKGDFVKLIGIVRVYGSKITMYAYNTTVIKDEG 228


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.141    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91855776
Number of Sequences: 2977
Number of extensions: 4231374
Number of successful extensions: 7382
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7379
Number of HSP's gapped (non-prelim): 2
length of query: 229
length of database: 189,106,746
effective HSP length: 53
effective length of query: 176
effective length of database: 157,386,935
effective search space: 27700100560
effective search space used: 27700100560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)