BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0115 (PAB0115) DE:Hypothetical protein
(372 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75206 hypothetical protein PAB0115 - Pyrococcus abyssi (st... 714 0.0
pir||C71241 hypothetical protein PH0189 - Pyrococcus horikoshii ... 588 e-167
gi|11499622 conserved hypothetical protein [Archaeoglobus fulgid... 159 5e-38
gb|AAG19497.1| (AE005041) Vng1101c [Halobacterium sp. NRC-1] 143 3e-33
pir||E69094 conserved hypothetical protein MTH1700 - Methanobact... 134 2e-30
pir||F64434 hypothetical protein MJ1079 - Methanococcus jannasch... 129 4e-29
>pir||A75206 hypothetical protein PAB0115 - Pyrococcus abyssi (strain Orsay)
>gi|5457605|emb|CAB49096.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 372
Score = 714 bits (1824), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MNMKELIEGILLGTLTGLTPGLHVNSLSRLSLPIPVLFVMGLVHTFLDSIPSALFGVPDA 60
MNMKELIEGILLGTLTGLTPGLHVNSLSRLSLPIPVLFVMGLVHTFLDSIPSALFGVPDA
Sbjct: 1 MNMKELIEGILLGTLTGLTPGLHVNSLSRLSLPIPVLFVMGLVHTFLDSIPSALFGVPDA 60
Query: 61 DDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSILAMPIYFLVAPLYTFKIGIVFV 120
DDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSILAMPIYFLVAPLYTFKIGIVFV
Sbjct: 61 DDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSILAMPIYFLVAPLYTFKIGIVFV 120
Query: 121 FLLSIFLITFQRNKIRALLIFVLAGVLGFVTFQLPIKDPFYPLFTGLFALPLLIEAYRNP 180
FLLSIFLITFQRNKIRALLIFVLAGVLGFVTFQLPIKDPFYPLFTGLFALPLLIEAYRNP
Sbjct: 121 FLLSIFLITFQRNKIRALLIFVLAGVLGFVTFQLPIKDPFYPLFTGLFALPLLIEAYRNP 180
Query: 181 PSKVEIRDSELKIPLKRLLKFSAFGTLFVALASLLPTLTAGQASLLGSKFTESDEDFLTI 240
PSKVEIRDSELKIPLKRLLKFSAFGTLFVALASLLPTLTAGQASLLGSKFTESDEDFLTI
Sbjct: 181 PSKVEIRDSELKIPLKRLLKFSAFGTLFVALASLLPTLTAGQASLLGSKFTESDEDFLTI 240
Query: 241 VYSTNTAAYSFSLANLALTGKTRNGVMVAIGDVSVMELPYLYLLALSAGMIVVVLAPRLA 300
VYSTNTAAYSFSLANLALTGKTRNGVMVAIGDVSVMELPYLYLLALSAGMIVVVLAPRLA
Sbjct: 241 VYSTNTAAYSFSLANLALTGKTRNGVMVAIGDVSVMELPYLYLLALSAGMIVVVLAPRLA 300
Query: 301 ILMAKVAFKSYKQAILAIIIFLFILGYIYNGVIGIGVMMSAMFLGFLAPEWRVARVTYMG 360
ILMAKVAFKSYKQAILAIIIFLFILGYIYNGVIGIGVMMSAMFLGFLAPEWRVARVTYMG
Sbjct: 301 ILMAKVAFKSYKQAILAIIIFLFILGYIYNGVIGIGVMMSAMFLGFLAPEWRVARVTYMG 360
Query: 361 VLMFPILVETII 372
VLMFPILVETII
Sbjct: 361 VLMFPILVETII 372
>pir||C71241 hypothetical protein PH0189 - Pyrococcus horikoshii
>gi|3256575|dbj|BAA29258.1| (AP000001) 373aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 373
Score = 588 bits (1499), Expect = e-167
Identities = 293/367 (79%), Positives = 335/367 (90%)
Query: 6 LIEGILLGTLTGLTPGLHVNSLSRLSLPIPVLFVMGLVHTFLDSIPSALFGVPDADDTVP 65
LIEG+ GTLTGLTPGLHVNSLSRLSLPIPVLFVMGLVHTFLDSIPSALFGVP+ADDTVP
Sbjct: 7 LIEGVAFGTLTGLTPGLHVNSLSRLSLPIPVLFVMGLVHTFLDSIPSALFGVPEADDTVP 66
Query: 66 SLLPSHRMVIRGKFGELVRLSVSASMLAVMLSILAMPIYFLVAPLYTFKIGIVFVFLLSI 125
SLLPSHRMVI+G+FGELVRLS+SASMLA++LSILA+P+Y LVAPLYT+K GI+FV +LS+
Sbjct: 67 SLLPSHRMVIQGRFGELVRLSISASMLALILSILALPLYTLVAPLYTYKFGILFVAVLSL 126
Query: 126 FLITFQRNKIRALLIFVLAGVLGFVTFQLPIKDPFYPLFTGLFALPLLIEAYRNPPSKVE 185
+I FQRNK+ AL IF+L+G LGF+TF+LP+ DPFYPLFTGLFALPLLIEAY NPPS+V+
Sbjct: 127 LIIMFQRNKVAALAIFLLSGFLGFITFRLPVHDPFYPLFTGLFALPLLIEAYLNPPSEVK 186
Query: 186 IRDSELKIPLKRLLKFSAFGTLFVALASLLPTLTAGQASLLGSKFTESDEDFLTIVYSTN 245
I DSEL+I R++KFSA GT F ALASLLPTLTAGQ+SLLGSKFTE+DEDFLTIVYSTN
Sbjct: 187 IEDSELRISKLRIIKFSALGTFFGALASLLPTLTAGQSSLLGSKFTENDEDFLTIVYSTN 246
Query: 246 TAAYSFSLANLALTGKTRNGVMVAIGDVSVMELPYLYLLALSAGMIVVVLAPRLAILMAK 305
TAAYSFSL NLALTG+ RNGVMVAIGDVS+ ELPYLYLLALSAGMIV+ LAP+LA+LM K
Sbjct: 247 TAAYSFSLVNLALTGRARNGVMVAIGDVSLNELPYLYLLALSAGMIVLSLAPKLALLMGK 306
Query: 306 VAFKSYKQAILAIIIFLFILGYIYNGVIGIGVMMSAMFLGFLAPEWRVARVTYMGVLMFP 365
+AFK Y+ +I+ I+ FLFILGY+YNG+IG+ +M+SAMFLGFLAP W VARVTYMGVLM P
Sbjct: 307 LAFKRYRLSIILILSFLFILGYVYNGIIGVTLMLSAMFLGFLAPMWGVARVTYMGVLMVP 366
Query: 366 ILVETII 372
ILVETII
Sbjct: 367 ILVETII 373
>gi|11499622 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483198|pir||G69504 conserved hypothetical protein
AF2040 - Archaeoglobus fulgidus
>gi|2648495|gb|AAB89214.1| (AE000962) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 396
Score = 159 bits (398), Expect = 5e-38
Identities = 113/398 (28%), Positives = 199/398 (49%), Gaps = 41/398 (10%)
Query: 3 MKELIEGILLGTLTGLTPGLHVNSLSRLSL--------PIPVLFVMGLVHTFLDSIPSAL 54
+ + + G LLG + GL PG+H N+ + L+L P ++ + +T + IP+
Sbjct: 2 LTDTLLGTLLGFIAGLIPGIHSNTFASLTLLYSPSFQNPSAIIVSSAIAYTIANIIPTVF 61
Query: 55 FGVPDADDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSILAMPIYFLVAPLYTF- 113
GVPD +DT ++ P++ MV+ G+ E V +S AS LA++LS L P +L+ Y+
Sbjct: 62 LGVPD-EDTAIAVHPANEMVLEGRGFEAVSISAIASFLAIILSFLLYPAIYLLGLSYSAI 120
Query: 114 -KIGIVFVFLLSIFLITFQRN------------KIRALLIFVLAGVLGFVTFQL------ 154
+ + + +S FLI +R ++ A L+F ++G +GFVTFQ+
Sbjct: 121 RRFTPLALLAISAFLILTERGEEFGGSYSAWRKRLYAFLVFAVSGFIGFVTFQVSEYVYN 180
Query: 155 PIKDPFYPLFTGLFALPLLIEAYRNPPSKVEIRDSELKIPLKRLLKFSAFGTLFVALASL 214
P F PL TGLF +P+L++ E+R L++P + + GT+ L SL
Sbjct: 181 PAGSMFLPLLTGLFGVPILLQTTSGSVPPQEVR---LRMPGSNAV---SAGTIAGFLVSL 234
Query: 215 LPTLTAGQASLLGSKFTESDEDFLTIVYSTNTAAYSFSLANLALTGKTRNGVMVAIGDVS 274
P +++G A++L + E ++ V + N+A L T KTR+G A+ +
Sbjct: 235 FPGVSSGVATVLATVGIRDREGYVAAVSAANSANAVLCFFMLIATSKTRSGAADALLSLG 294
Query: 275 V----MELPYLYLLALSAGMIVVVLAPRLAILMAKVAFKSYKQAILAIIIFLFILGYIYN 330
V EL ++ ++ S + + + RLA+ +++ + + A+++FL L Y
Sbjct: 295 VHPSFFELIFMVTVSASIALPLTLFVSRLAL--SRLTRLRFSKLSAAVLLFLIALTYTLT 352
Query: 331 GVIGIGVMMSAMFLGFLAPEWRVARVTYMGVLMFPILV 368
G +G+ V+ + +G AP V R MG L+ P+L+
Sbjct: 353 GFVGLMVLFVSSIVGMSAPLLGVRRANCMGCLIIPVLL 390
>gb|AAG19497.1| (AE005041) Vng1101c [Halobacterium sp. NRC-1]
Length = 414
Score = 143 bits (357), Expect = 3e-33
Identities = 108/391 (27%), Positives = 189/391 (47%), Gaps = 31/391 (7%)
Query: 9 GILLGTLTGLTPGLHVNSLSRL---SLPIP---------VLFVMGLVHTFLDSIPSALFG 56
G+ LGT +GL PG+HVN+L+ L + P+ L G+ H+ LD +P G
Sbjct: 25 GVALGTCSGLVPGVHVNTLALLLAAAAPLAPGPPHLVGAALLAAGVTHSILDVVPMLALG 84
Query: 57 VPDADDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSI-LAMPIYFLV---APLYT 112
VPDA V S+LP HR+V+ G+ E +R+S S AV++++ +P +L AP+
Sbjct: 85 VPDAALAV-SVLPGHRLVLGGRGREALRVSALGSATAVVVAVAFGVPATWLAVRAAPVVY 143
Query: 113 FKIGIVFVFLLSIFLIT--FQRNKIRALLIFVLAGVLGFVTFQL------PIKDPFYPLF 164
+ +V L+ + + +R ++ A+L +G LG V + P D PLF
Sbjct: 144 AHLPVVLAVLVVVLVARERSRRARLGAVLAVAASGTLGSVALPMQPDAVVPTGDVLSPLF 203
Query: 165 TGLFALPLLIEAYRNPPSKVEIRDSELKIPLKRLLKFSAFGTLFVALASLLPTLTAGQAS 224
GLF P+L+ A+R E D+ + +P + +++ G+L A + +P ++ A+
Sbjct: 204 AGLFGAPVLLAAFRGDGIP-EQADARIAVPPREVVRPGVAGSLAGAAVAYVPGVSGAIAA 262
Query: 225 LLGSKFT---ESDEDFLTIVYSTNTAAYSFSLANLALTGKTRNGVMVAIGDVSVME-LPY 280
+ T D F+ + NTA F+L L G GV+VA + LP
Sbjct: 263 VFALDLTGDDSGDRAFVAALSGVNTANTVFALFALFAIGDPHTGVLVAFERARLPRTLPV 322
Query: 281 LYLLALSAGMIVVVLAPRLAILMAK-VAFKSYKQAILAIIIFLFILGYIYNGVIGIGVMM 339
L + A ++ + P + + V +++ + + L ++ +++ G G+G++
Sbjct: 323 LVASVVLAAVVTAAMVPAVGDRYFRAVRAVDHRRLTAGVCLLLVVVAWLFGGGTGVGLLG 382
Query: 340 SAMFLGFLAPEWRVARVTYMGVLMFPILVET 370
+A +G + P + RV MGVL+ PI + T
Sbjct: 383 AATAVGAIPPVFGARRVHLMGVLLVPIALGT 413
>pir||E69094 conserved hypothetical protein MTH1700 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622831|gb|AAB86172.1| (AE000927) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 397
Score = 134 bits (333), Expect = 2e-30
Identities = 107/380 (28%), Positives = 183/380 (48%), Gaps = 56/380 (14%)
Query: 9 GILLGTLTGLTPGLHVNSLSRLS----------LPIPVLFV----MGLVHTFLDSIPSAL 54
G++ G LTGL PG+HVN++ LP VL V + + H L+ IPS L
Sbjct: 14 GVITGALTGLIPGIHVNTVGAFIFAASGQILGFLPEEVLAVFLLSLSVTHALLEFIPSTL 73
Query: 55 FGVPDADDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSILAMPIYFL-VAPLYTF 113
GVPD + T S+LP HRMV+ G+ GE +R + + ++L+I+ +P L + PLY F
Sbjct: 74 LGVPD-EATALSVLPGHRMVLEGRAGEAIRAATVGGVGGILLTIILLPFLLLALPPLYGF 132
Query: 114 ---KIGIVFVFLLSIFLITFQRN---KIRALLIFVLAGVLGFVTFQLPIKD--PFYPLFT 165
I ++ + + ++ RN + A+++F+ +G +G++ FQ PI LFT
Sbjct: 133 IRPHIWLILILVSGYMMLKLSRNFETLLWAVILFLFSGAMGWIIFQAPISPGLGLMTLFT 192
Query: 166 GLFALPLLIEAYRNPPSKVEIRDSELKIPLKRLLKFSAF----------GTLFVALASLL 215
G F L ++ ++ S +P + + F+ F G L L L
Sbjct: 193 GFFGLSTMVYSF----------SSGSYLPEQEIEPFTEFDGGTARSVLAGGLASVLLGFL 242
Query: 216 PTLTAGQ-----ASLLGSKFTESDEDFLTIVYSTNTAAYSFSLANLALTGKTRNGVMVAI 270
P Q SL GS +S DF+T + NT+ FSL L + G R+G+ V I
Sbjct: 243 PGFGPAQGGMIACSLTGSGGEDSPGDFITALSCLNTSDALFSLLTLYIIGNPRSGIAVYI 302
Query: 271 GDV-SVMELPYLYLLALSAGMIVVVLAPRLAI-----LMAKVAFKSYKQAILAIIIFLFI 324
+ ++ +++L +SA ++ V LA ++I L A ++ +Y + L +++F+
Sbjct: 303 SQIMQDIDAGHIFLF-ISASLLAVSLAAVISIRAADYLCANLSGINYGKISLVVMLFMTA 361
Query: 325 LGYIYNGVIGIGVMMSAMFL 344
+++ + G + A+ L
Sbjct: 362 SVFVFAVMEGASIPFIALAL 381
>pir||F64434 hypothetical protein MJ1079 - Methanococcus jannaschii
>gi|1591727|gb|AAB99076.1| (U67550) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 397
Score = 129 bits (322), Expect = 4e-29
Identities = 115/398 (28%), Positives = 189/398 (46%), Gaps = 37/398 (9%)
Query: 1 MNMKELIEGILLGTLTGLTPGLHVN---SLSRLSLP-------IPVLFVMGLVHTFLDSI 50
+N+ LI GI+ GT+TGL PG+H N +LS L LP IP L + + H F++ I
Sbjct: 2 LNLLYLILGIICGTITGLFPGIHPNNIVALSFLILPYFGLDNYIPFLIGLVITHYFINFI 61
Query: 51 PSALFGVPDADDTVPSLLPSHRMVIRGKFGELVRLSVSASMLAVMLSI-----LAMPIYF 105
PSA GVPD D+T S LP H++ + G E + L+ S L V+ SI L ++F
Sbjct: 62 PSAFLGVPD-DETAVSALPMHKLTLNGNGYEAIVLAGFGSYLGVVFSILISLFLMSILHF 120
Query: 106 LVAPLY-TFKIGIVFVFLLSIFLITFQRNKIRALLIFVLAGVLGFVTFQL--PIKDPFYP 162
V Y + KI I F+ + I F + +L+ L+G+ G
Sbjct: 121 DVRAFYCSIKIFIPFILIAFILYQIFTAKSVWEVLVIFLSGIFGIAVLYCSEAFNITLTA 180
Query: 163 LFTGLFALPLLI---EAYRNPPSKVEIRDSELKIPLKRLLKFSAFGTLFVALASLLPTLT 219
+FTG+F +PLLI + Y+ + D ELK LK S F ++ LP ++
Sbjct: 181 IFTGMFGIPLLINNLKTYKIKSQMMAFPDFELK-----FLKSSFFASVAGFFRIFLPGIS 235
Query: 220 AGQASLLGSKFTESDEDFLTIVYSTNTAAYS---FSLANLALTGKTRNGVMVAI----GD 272
Q + + SK ++ D + S + S FSL + G R+GV AI +
Sbjct: 236 GAQLNYILSKIL-NERDLKNFIVSQGSIILSNEVFSLLAVIFIGVGRSGVARAIQLLNAN 294
Query: 273 VSVMELPYLYLLALSAGMIVVV-LAPRLAILMAKVAFKSYKQAILAIIIFLFILG-YIYN 330
+++ + L++ + +I+++ L+ + + + KV FK + + I+G Y
Sbjct: 295 ININTAIFSILISSTIAIIILLNLSKYILLFIRKVNFKFLSLFFIIFCSLVVIIGSYNTY 354
Query: 331 GVIGIGVMMSAMFLGFLAPEWRVARVTYMGVLMFPILV 368
+ I V ++A+++G LA + M VL+FP ++
Sbjct: 355 LIYHIIVYLTAIYIGLLAVKSNTNLSNMMNVLIFPTIL 392
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.146 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119858590
Number of Sequences: 2977
Number of extensions: 4789309
Number of successful extensions: 18861
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18838
Number of HSP's gapped (non-prelim): 8
length of query: 372
length of database: 189,106,746
effective HSP length: 54
effective length of query: 318
effective length of database: 156,788,448
effective search space: 49858726464
effective search space used: 49858726464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 166 (69.1 bits)