BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0116 (PAB0116) DE:Hypothetical protein
         (192 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75206 hypothetical protein PAB0116 - Pyrococcus abyssi (st...   389  e-107
pir||D71241 hypothetical protein PH0190 - Pyrococcus horikoshii ...   272  2e-72

>pir||B75206 hypothetical protein PAB0116 - Pyrococcus abyssi (strain Orsay)
           >gi|5457606|emb|CAB49097.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 192
           
 Score =  389 bits (988), Expect = e-107
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MDVKDPLMAAFPVAKRLWKAIIKNRRFVELSEVADILEEVGLKKACFGDGLLLFRNRDVI 60
           MDVKDPLMAAFPVAKRLWKAIIKNRRFVELSEVADILEEVGLKKACFGDGLLLFRNRDVI
Sbjct: 1   MDVKDPLMAAFPVAKRLWKAIIKNRRFVELSEVADILEEVGLKKACFGDGLLLFRNRDVI 60

Query: 61  ALLVPRNGMIIIDFISATGELSDALELVAYLDKEIECYVIEILPASEFEEENIGVEPVII 120
           ALLVPRNGMIIIDFISATGELSDALELVAYLDKEIECYVIEILPASEFEEENIGVEPVII
Sbjct: 61  ALLVPRNGMIIIDFISATGELSDALELVAYLDKEIECYVIEILPASEFEEENIGVEPVII 120

Query: 121 DANTFELKSYPVLGEFEERKNLILHVDRETFDLWKESGKLSICPVCGGRLKWKGERAICT 180
           DANTFELKSYPVLGEFEERKNLILHVDRETFDLWKESGKLSICPVCGGRLKWKGERAICT
Sbjct: 121 DANTFELKSYPVLGEFEERKNLILHVDRETFDLWKESGKLSICPVCGGRLKWKGERAICT 180

Query: 181 DCGVEVVVDEER 192
           DCGVEVVVDEER
Sbjct: 181 DCGVEVVVDEER 192


>pir||D71241 hypothetical protein PH0190 - Pyrococcus horikoshii
           >gi|3256576|dbj|BAA29259.1| (AP000001) 193aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 193
           
 Score =  272 bits (688), Expect = 2e-72
 Identities = 126/193 (65%), Positives = 158/193 (81%), Gaps = 1/193 (0%)

Query: 1   MDVKDPLMAAFPVAKRLWKAIIKNRRFVELSEVADILEEVGLKKACFGDGLLLFRNRDVI 60
           MDV +P+MAAFP+AKRLW AI+  +   +  EV+ I+EE+GL+     +G+ LFRNR V+
Sbjct: 1   MDVNEPIMAAFPIAKRLWNAIVNKKGLPDPEEVSRIIEEIGLRNLYKDEGIALFRNRYVV 60

Query: 61  ALLVPRNGMIIIDFISATGELSDALELVAYLDKEIECYVIEILPASEFE-EENIGVEPVI 119
           ALL+PR  MI+IDFISA+GELSDALELVAY DKEIECYVIEI+PA+E E EEN+G+EPVI
Sbjct: 61  ALLIPRKNMIVIDFISASGELSDALELVAYYDKEIECYVIEIIPANELEYEENLGIEPVI 120

Query: 120 IDANTFELKSYPVLGEFEERKNLILHVDRETFDLWKESGKLSICPVCGGRLKWKGERAIC 179
           IDA TFELKSYPVLGEFE  + + L +D  TF LW+ESGKL++CPVCGG L+WK E+A+C
Sbjct: 121 IDAKTFELKSYPVLGEFEVGRKVKLKIDSYTFKLWRESGKLNVCPVCGGELRWKKEKAVC 180

Query: 180 TDCGVEVVVDEER 192
            DCG+EV++ EER
Sbjct: 181 LDCGIEVIISEER 193


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71669691
Number of Sequences: 2977
Number of extensions: 2925587
Number of successful extensions: 6631
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6628
Number of HSP's gapped (non-prelim): 2
length of query: 192
length of database: 189,106,746
effective HSP length: 51
effective length of query: 141
effective length of database: 158,583,909
effective search space: 22360331169
effective search space used: 22360331169
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)