BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0124 (PAB0124) DE:Hypothetical protein
(357 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75207 hypothetical protein PAB0124 - Pyrococcus abyssi (st... 699 0.0
pir||C71242 hypothetical protein PH0197 - Pyrococcus horikoshii ... 581 e-165
pir||B64464 hypothetical protein MJ1315 - Methanococcus jannasch... 391 e-108
gi|11499631 conserved hypothetical protein [Archaeoglobus fulgid... 88 2e-16
pir||E72545 hypothetical protein APE1649 - Aeropyrum pernix (str... 76 8e-13
>pir||E75207 hypothetical protein PAB0124 - Pyrococcus abyssi (strain Orsay)
>gi|5457617|emb|CAB49108.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 699 bits (1785), Expect = 0.0
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MMRMASNKAMFTNDVPQDRLLAVEKIESLRKPAKVMIIGDVDTGKTTLTIYLANELLSRG 60
MMRMASNKAMFTNDVPQDRLLAVEKIESLRKPAKVMIIGDVDTGKTTLTIYLANELLSRG
Sbjct: 1 MMRMASNKAMFTNDVPQDRLLAVEKIESLRKPAKVMIIGDVDTGKTTLTIYLANELLSRG 60
Query: 61 FRVAIIDSDIGQKGILPPATISLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGV 120
FRVAIIDSDIGQKGILPPATISLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGV
Sbjct: 61 FRVAIIDSDIGQKGILPPATISLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGV 120
Query: 121 MKLSELAMKFSDVVLIDTTGMIYGSGVELKRMKIEAVKPNLILALERNNELAPILKGYED 180
MKLSELAMKFSDVVLIDTTGMIYGSGVELKRMKIEAVKPNLILALERNNELAPILKGYED
Sbjct: 121 MKLSELAMKFSDVVLIDTTGMIYGSGVELKRMKIEAVKPNLILALERNNELAPILKGYED 180
Query: 181 ITIRLEVSEKAKDFSRSERRELRREKWRKYFENSKIVNFNLDDVLVTGTSLFQGEEIGDT 240
ITIRLEVSEKAKDFSRSERRELRREKWRKYFENSKIVNFNLDDVLVTGTSLFQGEEIGDT
Sbjct: 181 ITIRLEVSEKAKDFSRSERRELRREKWRKYFENSKIVNFNLDDVLVTGTSLFQGEEIGDT 240
Query: 241 EKSLLERLFKWLIIHGRKIGNKYFVVKVDASEGPRIVDKNVVKYFDFSKLSNILLGLIDK 300
EKSLLERLFKWLIIHGRKIGNKYFVVKVDASEGPRIVDKNVVKYFDFSKLSNILLGLIDK
Sbjct: 241 EKSLLERLFKWLIIHGRKIGNKYFVVKVDASEGPRIVDKNVVKYFDFSKLSNILLGLIDK 300
Query: 301 QGFCIGLGILKSINFKEKKIEVLTPVEDLSSVAEIRFGRVRVREDGEELGLLDREAL 357
QGFCIGLGILKSINFKEKKIEVLTPVEDLSSVAEIRFGRVRVREDGEELGLLDREAL
Sbjct: 301 QGFCIGLGILKSINFKEKKIEVLTPVEDLSSVAEIRFGRVRVREDGEELGLLDREAL 357
>pir||C71242 hypothetical protein PH0197 - Pyrococcus horikoshii
>gi|3256583|dbj|BAA29266.1| (AP000001) 361aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 361
Score = 581 bits (1482), Expect = e-165
Identities = 275/355 (77%), Positives = 328/355 (91%)
Query: 3 RMASNKAMFTNDVPQDRLLAVEKIESLRKPAKVMIIGDVDTGKTTLTIYLANELLSRGFR 62
+M +NKA FTN+VP+DR +A EKI SL+KPA VMIIGDVDTGKTTLTIYLANEL+SRGFR
Sbjct: 7 KMGTNKAFFTNEVPEDRYIAAEKISSLKKPATVMIIGDVDTGKTTLTIYLANELISRGFR 66
Query: 63 VAIIDSDIGQKGILPPATISLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGVMK 122
V+IIDSD+GQK ILPPATISLAFVD+HF+SL+DL F+HYF+GTITP+Q+FGEMV+GVMK
Sbjct: 67 VSIIDSDVGQKSILPPATISLAFVDTHFSSLEDLTPFAHYFVGTITPSQFFGEMVIGVMK 126
Query: 123 LSELAMKFSDVVLIDTTGMIYGSGVELKRMKIEAVKPNLILALERNNELAPILKGYEDIT 182
L+ELA KFSDVVLIDTTGMIYG GVELKRMKIEA+KP+LILALER NEL PI+KG+EDIT
Sbjct: 127 LAELAKKFSDVVLIDTTGMIYGPGVELKRMKIEAIKPDLILALERENELTPIIKGFEDIT 186
Query: 183 IRLEVSEKAKDFSRSERRELRREKWRKYFENSKIVNFNLDDVLVTGTSLFQGEEIGDTEK 242
++L VS+K K+FSRSER+ELRREKW++YFENS+IV FN++D+LVTGTS+FQG+ I + EK
Sbjct: 187 LKLRVSDKVKEFSRSERKELRREKWKRYFENSRIVTFNVNDILVTGTSMFQGKPIEEGEK 246
Query: 243 SLLERLFKWLIIHGRKIGNKYFVVKVDASEGPRIVDKNVVKYFDFSKLSNILLGLIDKQG 302
+LLERLFKWLI+HGRK+G +YFVVKVD SEGPR+VDKNVV+YFDFSKLSN+LLGL+DK+G
Sbjct: 247 NLLERLFKWLILHGRKLGERYFVVKVDTSEGPRVVDKNVVRYFDFSKLSNLLLGLLDKEG 306
Query: 303 FCIGLGILKSINFKEKKIEVLTPVEDLSSVAEIRFGRVRVREDGEELGLLDREAL 357
FC G+GILK+INF E ++EVLTPV+D+S + EIRFGR+RVREDGEELGLLDRE L
Sbjct: 307 FCQGVGILKAINFSEGRLEVLTPVKDISIITEIRFGRIRVREDGEELGLLDREVL 361
>pir||B64464 hypothetical protein MJ1315 - Methanococcus jannaschii
>gi|1591954|gb|AAB99322.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 361
Score = 391 bits (994), Expect = e-108
Identities = 184/355 (51%), Positives = 269/355 (74%), Gaps = 4/355 (1%)
Query: 7 NKAMFTNDVPQDRLLAVEKIESLRKPAKVMIIGDVDTGKTTLTIYLANELLSRGFRVAII 66
+KA +T ++P+DR A+ I+ +KP K++++G VD+GKTTL +LANELL+ GF+VAI+
Sbjct: 7 SKAYYTTEIPEDRFEALSCIKDSQKPLKIILLGGVDSGKTTLATFLANELLNLGFKVAIV 66
Query: 67 DSDIGQKGILPPATISLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGVMKLSEL 126
DSD+GQK ILPPATISLAF +++F +L ++K + YF+G+ P Q+FGEM+ G L +
Sbjct: 67 DSDVGQKSILPPATISLAFPETNFNNLYEIKPYKSYFVGSTAPIQFFGEMITGTKLLCDY 126
Query: 127 AMKFSDVVLIDTTGMIYGSGVELKRMKIEAVKPNLILALERNNELAPILKGYED--ITIR 184
A +D++++DTTG+I GSG +LKRMKIE +KP++I+ALE+ NEL ILK +E+
Sbjct: 127 AEDKADIIIVDTTGLISGSGADLKRMKIEMIKPDIIIALEKRNELKSILKPFENKIRVFY 186
Query: 185 LEVSEKAKDFSRSERRELRREKWRKYFENSKIVNFNLDDVLVTGTSLFQGEEIGDTEKSL 244
L+V E AK FSR ER+E+R EKW++YF+NSKI N +DV++ GT +FQGE+I + EK L
Sbjct: 187 LKVYENAKSFSREERKEIRAEKWKEYFKNSKIYNIGFNDVVIGGTKVFQGEKILEDEKYL 246
Query: 245 LERLFKWLIIHGRKIGNKYFVVKVDASEGPRIVDKNVVKYFDFSKLSNILLGLIDKQGFC 304
LE LFKW I++G K +Y +VK D PR +DKN++ Y + + +N+++GLID+ FC
Sbjct: 247 LESLFKWKILYGSKCDGRYTIVKRDLVNMPRQIDKNILYYIEPERFNNLIVGLIDEDSFC 306
Query: 305 IGLGILKSINFKEKKIEVLTPV--EDLSSVAEIRFGRVRVREDGEELGLLDREAL 357
IGLGILK+I+F+ + +E+LTP+ ED+ ++ EIRFGR+RV E+GEELGLLDR+++
Sbjct: 307 IGLGILKTIDFENETLEILTPISEEDIKNIREIRFGRIRVDENGEELGLLDRDSI 361
>gi|11499631 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483200|pir||H69505 conserved hypothetical protein
AF2049 - Archaeoglobus fulgidus
>gi|2648478|gb|AAB89198.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 378
Score = 87.8 bits (214), Expect = 2e-16
Identities = 89/336 (26%), Positives = 155/336 (45%), Gaps = 44/336 (13%)
Query: 27 ESLRKPAK-----VMIIGDVDTGKTTLTIYLANELLSRGFRVAIIDSDIGQKGILPPATI 81
ES +K AK + + G VD GK+TL YLAN+L I+D DIGQ +L P +
Sbjct: 63 ESWKKLAKRDWEVLFLYGGVDVGKSTLATYLANKLGG----CYILDLDIGQSELLHPGAM 118
Query: 82 SLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGVMKLSELAMKFSDVVLIDTTGM 141
F + +L + + YF+G I+P + + GV +L K +++TTG
Sbjct: 119 GYGFA-RNCVNLSQAEYINGYFVGVISPMGKEVKCIRGVARLWGELKKLEGRKIVNTTGW 177
Query: 142 IYGS-GVELKRMKIEAVKPNLILALERNNELAPILKGYEDITIRLEVSEKAKDFSRSERR 200
+ G+ ++ K K+E + P+++ + E N ED + S + + SR ER
Sbjct: 178 VRGARALDYKLAKLEVINPDIVASFEDAN--------LEDWNVFRVESGEVVERSREERA 229
Query: 201 ELRREKWRKYFENSKIVNFNLDDVLVTGTSLFQGEEIGDTEKSLLERLFKWLIIHGRKIG 260
++R EK+R+ E SK+V +D V+G F G+ I K +E + + + RK G
Sbjct: 230 KIRMEKYRRELEGSKLV--VVDKSRVSG-RFFNGKNI---VKDFIEDVLEVRVKEVRK-G 282
Query: 261 NKYFVVKVDASEGPRIVDKNVVKYFD------------FSKLSNILLGLIDKQGFCIGLG 308
+ ++ +E VD +++K +L +++G+ + +GLG
Sbjct: 283 EDFLLI---LTEEKIEVDSSIIKSLKMLYEVEDVYVVAMEELEGLVVGVYRGSKY-LGLG 338
Query: 309 ILKSINFKEKKIEVLTPVEDLSSVAEIRFGRVRVRE 344
+++ +E IE T D + FG + +E
Sbjct: 339 VVREFRGEEFVIE--TRHTDFDRIVLGEFGIAQGKE 372
>pir||E72545 hypothetical protein APE1649 - Aeropyrum pernix (strain K1)
>gi|5105337|dbj|BAA80650.1| (AP000062) 406aa long
hypothetical protein [Aeropyrum pernix]
Length = 406
Score = 75.7 bits (183), Expect = 8e-13
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 2/189 (1%)
Query: 26 IESLRKPAKVMIIGDVDTGKTTLTIYLANELLSRGFRVAIIDSDIGQKGILPPATISLAF 85
+E + M++G V+ GKT+LT LAN L+RG IID+D+GQ I PP +SL+
Sbjct: 70 LEECGRECTAMVVGPVEAGKTSLTAVLANRSLARGIPTGIIDADVGQADIGPPGFVSLSL 129
Query: 86 VDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGVMKLSELAM-KFSDVVLIDTTGMIYG 144
S L L + F+G+I P G +V V L A + + V +DT G + G
Sbjct: 130 PGSWVIWLRLLDPVALRFVGSIEPGPVAGRIVTAVASLRARARGEGAAFVAVDTDGWVKG 189
Query: 145 SG-VELKRMKIEAVKPNLILALERNNELAPILKGYEDITIRLEVSEKAKDFSRSERRELR 203
G +E K V + ++ + + K E + ERR LR
Sbjct: 190 WGALEYKIDLARGVNADAVVVVGDPELYGFLEKSLESNVYYVRSPSVQAVRGVDERRRLR 249
Query: 204 REKWRKYFE 212
E + ++ E
Sbjct: 250 SENYIRFLE 258
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121569990
Number of Sequences: 2977
Number of extensions: 4939975
Number of successful extensions: 17585
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17577
Number of HSP's gapped (non-prelim): 5
length of query: 357
length of database: 189,106,746
effective HSP length: 58
effective length of query: 299
effective length of database: 154,394,500
effective search space: 46163955500
effective search space used: 46163955500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)