BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0125 (PAB0125) DE:TRANSCRIPTIONAL REGULATORY PROTEIN, ASNC
FAMILY
         (155 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75207 transcription regulatory protein, asnc family PAB012...   301  2e-81
pir||E71242 hypothetical protein PH0199 - Pyrococcus horikoshii ...   294  3e-79

>pir||F75207 transcription regulatory protein, asnc family PAB0125 - Pyrococcus
           abyssi (strain Orsay) >gi|5457618|emb|CAB49109.1|
           (AJ248283) TRANSCRIPTIONAL REGULATORY PROTEIN, ASNC
           FAMILY [Pyrococcus abyssi]
           Length = 155
           
 Score =  301 bits (763), Expect = 2e-81
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MTRDRIELTNRQIELLRKLYREGKTIEVHTVEKTQDELAEELGITRQALSNHLKVLKELG 60
           MTRDRIELTNRQIELLRKLYREGKTIEVHTVEKTQDELAEELGITRQALSNHLKVLKELG
Sbjct: 1   MTRDRIELTNRQIELLRKLYREGKTIEVHTVEKTQDELAEELGITRQALSNHLKVLKELG 60

Query: 61  YIRTGRGFIDLTDKALELLGEKRGDVFIFVKIEPTKRKQVYDTIKKLRVKRIYRVTGDID 120
           YIRTGRGFIDLTDKALELLGEKRGDVFIFVKIEPTKRKQVYDTIKKLRVKRIYRVTGDID
Sbjct: 61  YIRTGRGFIDLTDKALELLGEKRGDVFIFVKIEPTKRKQVYDTIKKLRVKRIYRVTGDID 120

Query: 121 LIIEADKSRLDEILEEIAALDGVKETITHVVLGVL 155
           LIIEADKSRLDEILEEIAALDGVKETITHVVLGVL
Sbjct: 121 LIIEADKSRLDEILEEIAALDGVKETITHVVLGVL 155


>pir||E71242 hypothetical protein PH0199 - Pyrococcus horikoshii
           >gi|3256585|dbj|BAA29268.1| (AP000001) 155aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 155
           
 Score =  294 bits (745), Expect = 3e-79
 Identities = 148/155 (95%), Positives = 155/155 (99%)

Query: 1   MTRDRIELTNRQIELLRKLYREGKTIEVHTVEKTQDELAEELGITRQALSNHLKVLKELG 60
           MTR+R+ELTNRQIELLRKLYREGKTIEVHTVEKTQDELA+ELGITRQALSNHLK+LKELG
Sbjct: 1   MTRERVELTNRQIELLRKLYREGKTIEVHTVEKTQDELAQELGITRQALSNHLKILKELG 60

Query: 61  YIRTGRGFIDLTDKALELLGEKRGDVFIFVKIEPTKRKQVYDTIKKLRVKRIYRVTGDID 120
           YIRTGRGFIDLTDKALELLGEKRGDVFIFVKIEPTKRKQVYDTI+KLRVK+IYRVTGDID
Sbjct: 61  YIRTGRGFIDLTDKALELLGEKRGDVFIFVKIEPTKRKQVYDTIRKLRVKKIYRVTGDID 120

Query: 121 LIIEADKSRLDEILEEIAALDGVKETITHVVLGVL 155
           LIIEADKS+LDEILEEIAALDGVKETITHVVLGVL
Sbjct: 121 LIIEADKSKLDEILEEIAALDGVKETITHVVLGVL 155


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.374 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50390488
Number of Sequences: 2977
Number of extensions: 1962868
Number of successful extensions: 7941
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7939
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 189,106,746
effective HSP length: 57
effective length of query: 98
effective length of database: 154,992,987
effective search space: 15189312726
effective search space used: 15189312726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)