BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0126 190335 190757 141 !not a gene!
(141 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (str... 162 2e-39
pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (str... 104 6e-22
pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii ... 87 6e-17
pir||H72613 hypothetical protein APE1371 - Aeropyrum pernix (str... 70 9e-12
pir||D71073 hypothetical protein PH1279 - Pyrococcus horikoshii ... 68 5e-11
>pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (strain K1)
>gi|5105712|dbj|BAA81024.1| (AP000063) 280aa long
hypothetical protein [Aeropyrum pernix]
Length = 280
Score = 162 bits (405), Expect = 2e-39
Identities = 96/140 (68%), Positives = 102/140 (72%)
Query: 2 SISSLPSKSGNGTSMSLSNLPGLRSAGSNISGLLVAAITLTFPLGSKPSISARSCINVLL 61
SISSLP + G GTS+ LSNLPGLR+AGS S LLVAA+T T GSKPS SARS VL
Sbjct: 23 SISSLPRRLGRGTSIILSNLPGLRTAGSMRSSLLVAAMTFTLSRGSKPSSSARSWSMVLC 82
Query: 62 TSLSPPVVSSILLAPIASISSMNIIVGAFSLANSKSSWTSLAPSPMYFLTSSLPTTLMNV 121
TSLSP V S LL +ASISSMN I GAFSLA+ S TSLAPSPM LTSSLPTTLMNV
Sbjct: 83 TSLSPLVPMSTLLDAMASISSMNSIEGAFSLASLNISLTSLAPSPMNLLTSSLPTTLMNV 142
Query: 122 AFTSCAKAFAINVFPHPGGP 141
A S A A A VFP PGGP
Sbjct: 143 ASVSPATALARRVFPVPGGP 162
>pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (strain K1)
>gi|5106180|dbj|BAA81491.1| (AP000064) 353aa long
hypothetical protein [Aeropyrum pernix]
Length = 353
Score = 104 bits (256), Expect = 6e-22
Identities = 63/105 (60%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 2 SISSLPSKSGNGTSMSLSNLPGLRSAGSNISGLLVAAITLTFPLGSKPSISARSCINVLL 61
SISSLP SG GTS+SLSNLPGL AGS GLLVAA+T+T PL S PS+ ARSC LL
Sbjct: 252 SISSLPCLSGKGTSISLSNLPGLLRAGSMALGLLVAAMTITLPLASSPSMRARSCATTLL 311
Query: 62 TSLSPPVVSSILLAPIASISSMNIIVGAFSLANSKSSWTSLAPSP 106
S SP +S L +ASISSM I++GAF LA+SK S + + SP
Sbjct: 312 -STSP--TTSSLFGAMASISSMKIMLGAFFLASSKISLSRCSLSP 353
Score = 78.0 bits (189), Expect = 4e-14
Identities = 53/115 (46%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 27 AGSNISGLLVAAITLTFPLGSKPSISARSCINVLLTSLSPPVVSSILLAPIASISSMNII 86
AGS +SGLLVAAIT T PSIS S + +L +L P V L +ASISS N
Sbjct: 3 AGSTMSGLLVAAITTTSWRSETPSISVSSWLTILSVTLVPTSVP--LTGAMASISSKNTT 60
Query: 87 VGAFSLANSKSSWTSLAPSPMYFLTSSLPTTLMNVAFTSCAKAFAINVFPHPGGP 141
GA LA + S +L+ SP + L+ S P T M A S A A A +V P PGGP
Sbjct: 61 AGACCLAFANISLIALSLSPTHLLSISGPLTAMKFAPLSVATALASSVLPVPGGP 115
>pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii
>gi|3258279|dbj|BAA30962.1| (AP000007) 141aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 141
Score = 87.4 bits (213), Expect = 6e-17
Identities = 59/105 (56%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 2 SISSLPSKSGNGTSMSLSNLPGLRSAGSNISGLLVAAITLTFPLGSKPSISARSCINVLL 61
SIS LP SG TS+SLS PGL AGS SGLLVA IT+T PL KPSI A S L
Sbjct: 40 SISFLPCLSGTPTSISLSKRPGLLKAGSKASGLLVAPITITLPLPFKPSIKASSWATTLF 99
Query: 62 TSLSPPVVSSILLAPIASISSMNIIVGAFSLA--NSKSSWTSLAP 104
S SP V+S+L IASISS+ II GAFS A N+ + +SL+P
Sbjct: 100 -STSP--VTSLLFGAIASISSIKIIDGAFSSASLNTSLNLSSLSP 141
>pir||H72613 hypothetical protein APE1371 - Aeropyrum pernix (strain K1)
>gi|5105052|dbj|BAA80366.1| (AP000061) 159aa long
hypothetical protein [Aeropyrum pernix]
Length = 159
Score = 70.2 bits (169), Expect = 9e-12
Identities = 50/113 (44%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 31 ISGLLVAAITLTFPLGSKPSISARSCINVLLTSLSPPVVSSI--LLAPIASISSMNIIVG 88
+SGL VA +T TF G PSISA +L + P+VS++ L +ASISS N G
Sbjct: 1 MSGLFVAPMTTTFESGCIPSISASIWFTILSVT---PLVSNLAPLAGAMASISSKNTTAG 57
Query: 89 AFSLANSKSSWTSLAPSPMYFLTSSLPTTLMNVAFTSCAKAFAINVFPHPGGP 141
A LA SK +L+ SP + L+ S P T M A S A A A +V P PGGP
Sbjct: 58 AACLALSKIFRIALSLSPTHLLSISGPLTAMKFAPLSVATALARSVLPVPGGP 110
>pir||D71073 hypothetical protein PH1279 - Pyrococcus horikoshii
>gi|3257699|dbj|BAA30382.1| (AP000005) 189aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 189
Score = 67.9 bits (163), Expect = 5e-11
Identities = 50/116 (43%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 27 AGSNISGLLVAAITLTFPLGS-KPSISARSCINVLLTSLSPPVVSSILLAPIASISSMNI 85
A S G+ VA T+TF L S PSISA + +LL + S L S SS+NI
Sbjct: 2 ASSRSQGVFVAVSTITFLLLSLNPSISANNVPIILLAASS----RLDLFMVRESTSSINI 57
Query: 86 IVGAFSLANSKSSWTSLAPSPMYFLTSSLPTTLMNVAFTSCAKAFAINVFPHPGGP 141
+G LA K + T+ SP Y L SL TL NVAF A A A +FP PGGP
Sbjct: 58 TLGLSCLAKEKRAETNFEDSPKYLLRRSLAFTLKNVAFKLFAVALASKLFPVPGGP 113
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.128 0.358
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49726194
Number of Sequences: 2977
Number of extensions: 1763446
Number of successful extensions: 5857
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5850
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 189,106,746
effective HSP length: 59
effective length of query: 82
effective length of database: 153,796,013
effective search space: 12611273066
effective search space used: 12611273066
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)