BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0128 (RAD25-like) DE:DNA repair protein RAD25
(446 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75209 DNA repair protein rad25 PAB0128 - Pyrococcus abyssi... 892 0.0
pir||H71243 probable helicase protein PH0210 - Pyrococcus horiko... 840 0.0
gi|10955867 unknown [Yersinia pestis] >gi|7467383|pir||T14938 hy... 155 7e-37
gi|10955703 unknown [Yersinia pestis] >gi|7467352|pir||T14676 hy... 150 3e-35
gb|AAK40796.1| DNA repair protein rad25 [Sulfolobus solfataricus] 148 9e-35
pir||B75006 DNA repair protein rad25 PAB1312 - Pyrococcus abyssi... 124 2e-27
pir||C71156 probable helicase protein PH0450 - Pyrococcus horiko... 124 2e-27
emb|CAC12145.1| (AL445066) DNA repair protein RAD25 related prot... 120 3e-26
gb|AAK41233.1| DNA repair protein rad25 [Sulfolobus solfataricus] 117 3e-25
pir||B72707 hypothetical protein APE1073 - Aeropyrum pernix (str... 107 3e-22
gi|11497970 DNA repair protein RAD25 [Archaeoglobus fulgidus] >g... 106 5e-22
gi|6320539 Ydr332wp [Saccharomyces cerevisiae] >gi|2131433|pir||... 104 2e-21
gi|9632837 uvsW [Bacteriophage T4] >gi|731087|sp|P20703|UVSW_BPT... 103 4e-21
pir||B82176 helicase-related protein VC1636 [imported] - Vibrio ... 102 8e-21
gi|10803640 ORF H1047 [Halobacterium sp. NRC-1] >gi|7446116|pir|... 100 4e-20
gi|9631722 similar to phage T5 helicase, corresponds to Swiss-Pr... 98 2e-19
pir||E70815 hypothetical protein Rv0861c - Mycobacterium tubercu... 93 7e-18
gb|AAA16381.1| (U00008) yejH [Escherichia coli] 92 9e-18
sp|P33919|YEJH_ECOLI HYPOTHETICAL 66.4 KD PROTEIN IN RSUA-RPLY I... 92 9e-18
gb|AAF69763.1| (AF068771) similar to RAD25 [Synechocystis PCC9413] 91 2e-17
sp|P11107|VD10_BPT5 PROBABLE HELICASE (D10 PROTEIN) >gi|76137|pi... 91 3e-17
pir||F75608 conserved hypothetical protein - Deinococcus radiodu... 89 1e-16
pir||T40328 DEAD box family helicase - fission yeast (Schizosac... 86 7e-16
emb|CAB63670.1| (AJ251789) hypothetical protein [Lactobacillus c... 80 7e-14
sp|P24125|V51K_BPL79 51.5 KD PROTEIN >gi|76364|pir||JU0445 51K p... 76 6e-13
gb|AAG19725.1| (AE005058) putative DNA helicase; Rhl [Halobacter... 76 1e-12
pir||F71330 probable DNA repair helicase - syphilis spirochete >... 71 2e-11
emb|CAA73931.1| (Y13611) uvsW [Bacteriophage RB30] 69 7e-11
pir||T37821 probable dna repair helicase - fission yeast (Schiz... 69 1e-10
>pir||A75209 DNA repair protein rad25 PAB0128 - Pyrococcus abyssi (strain Orsay)
>gi|5457629|emb|CAB49120.1| (AJ248283) DNA repair
protein RAD25 [Pyrococcus abyssi]
Length = 446
Score = 892 bits (2279), Expect = 0.0
Identities = 446/446 (100%), Positives = 446/446 (100%)
Query: 1 MVVFRIPRGSAKVKVERADPKVYFQIYNLLSFRKDFGRWDKAESLYDPYTNTFPVGLLPR 60
MVVFRIPRGSAKVKVERADPKVYFQIYNLLSFRKDFGRWDKAESLYDPYTNTFPVGLLPR
Sbjct: 1 MVVFRIPRGSAKVKVERADPKVYFQIYNLLSFRKDFGRWDKAESLYDPYTNTFPVGLLPR 60
Query: 61 VKKFLNSKGYRVKVKDERVIDGVKINSTWNENYKLRKYQKKAVKLAIKEKMGVLALPVGS 120
VKKFLNSKGYRVKVKDERVIDGVKINSTWNENYKLRKYQKKAVKLAIKEKMGVLALPVGS
Sbjct: 61 VKKFLNSKGYRVKVKDERVIDGVKINSTWNENYKLRKYQKKAVKLAIKEKMGVLALPVGS 120
Query: 121 GKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITVAMI 180
GKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITVAMI
Sbjct: 121 GKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITVAMI 180
Query: 181 QTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEM 240
QTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEM
Sbjct: 181 QTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEM 240
Query: 241 KIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERN 300
KIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERN
Sbjct: 241 KIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERN 300
Query: 301 KAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKN 360
KAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKN
Sbjct: 301 KAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKN 360
Query: 361 GEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDVKDSD 420
GEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDVKDSD
Sbjct: 361 GEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDVKDSD 420
Query: 421 PLLFTHFIERQKALKQYYGKYYNLRL 446
PLLFTHFIERQKALKQYYGKYYNLRL
Sbjct: 421 PLLFTHFIERQKALKQYYGKYYNLRL 446
>pir||H71243 probable helicase protein PH0210 - Pyrococcus horikoshii
>gi|3256596|dbj|BAA29279.1| (AP000001) 444aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 444
Score = 840 bits (2147), Expect = 0.0
Identities = 411/444 (92%), Positives = 434/444 (97%)
Query: 1 MVVFRIPRGSAKVKVERADPKVYFQIYNLLSFRKDFGRWDKAESLYDPYTNTFPVGLLPR 60
MVVFRIPRGSAKVKVERADPKVYFQIYNLLSFR+DFGRWDKAESLYDPYTNTFP+GLLPR
Sbjct: 1 MVVFRIPRGSAKVKVERADPKVYFQIYNLLSFRRDFGRWDKAESLYDPYTNTFPIGLLPR 60
Query: 61 VKKFLNSKGYRVKVKDERVIDGVKINSTWNENYKLRKYQKKAVKLAIKEKMGVLALPVGS 120
VKK+LNSKGY+V+VKDERVI+G +NS WNE YKLRKYQKKAVKLAIKEKMGVLALPVGS
Sbjct: 61 VKKYLNSKGYKVRVKDERVIEGEPLNSQWNEEYKLRKYQKKAVKLAIKEKMGVLALPVGS 120
Query: 121 GKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITVAMI 180
GKTVVGLRIIHEI +SAL+IVHTKELLYQWA+KV+EILG+EPGIIGDNKWSEG ITVAMI
Sbjct: 121 GKTVVGLRIIHEINKSALVIVHTKELLYQWANKVREILGVEPGIIGDNKWSEGPITVAMI 180
Query: 181 QTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEM 240
QTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFY+VGISLPQVYRFGLSATPWRRLRGEEM
Sbjct: 181 QTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYKVGISLPQVYRFGLSATPWRRLRGEEM 240
Query: 241 KIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERN 300
KIEGVVGPIIYEVKAEDLI EGFLAKPKFEVIEY+SKMPALADKYKELYEEA+MENEERN
Sbjct: 241 KIEGVVGPIIYEVKAEDLIKEGFLAKPKFEVIEYDSKMPALADKYKELYEEAVMENEERN 300
Query: 301 KAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKN 360
+AIVEKAIELA QGHRVLIDVKRIDHGEILVKML++RG+NAEFLSSQSPNRWEILEK+K
Sbjct: 301 RAIVEKAIELAKQGHRVLIDVKRIDHGEILVKMLRDRGINAEFLSSQSPNRWEILEKYKK 360
Query: 361 GEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDVKDSD 420
GEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPK GGEAVIVDV+D+D
Sbjct: 361 GEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKPGGEAVIVDVRDTD 420
Query: 421 PLLFTHFIERQKALKQYYGKYYNL 444
PLLFTHFIERQKALKQYYGKYYN+
Sbjct: 421 PLLFTHFIERQKALKQYYGKYYNI 444
>gi|10955867 unknown [Yersinia pestis] >gi|7467383|pir||T14938 hypothetical
protein Y1022 - Yersinia pestis plasmid pMT1
>gi|3883023|gb|AAC82683.1| (AF074611) unknown [Yersinia
pestis] >gi|5834715|emb|CAB55212.1| (AL117211)
hypothetical protein YPMT1.30 [Yersinia pestis]
Length = 519
Score = 155 bits (389), Expect = 7e-37
Identities = 135/492 (27%), Positives = 228/492 (45%), Gaps = 69/492 (14%)
Query: 5 RIPRGSAKVKVERADPKVYFQIYNLLSFRKDFGRWDKAESLYDPYTNTFPVGLLPRVKKF 64
RI + + AD V + +LS+ + G W ++++ N FP G V
Sbjct: 4 RIVSNAVNALISGADDNVKRLVQEMLSYEVEAGDWKGTSTMFNWSKNAFPAGFAKPVAAN 63
Query: 65 LNSKGYR-VKVKDERVIDGVKINST-----WNENYKLRKYQKKAVKLAIKEKMGVLALPV 118
L G + V V+ E+ K N +N +Y YQ + V+ ++E M + +
Sbjct: 64 LLKAGIKCVHVRKEKAPALGKPNPVVNPFPYNPDYA---YQDQTVETLVREGMMIAQIAT 120
Query: 119 GSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEIL------------GIEPGIIG 166
G GK+ V + IGR L + L++Q A+ ++ + G + G+IG
Sbjct: 121 GGGKSNVACKAAARIGRMTLFLTTRSVLMFQMAENFQKSIDYRAENGEPWLKGQKVGVIG 180
Query: 167 DNKWSEG-DITVAMIQTLLS------RGTDKLQNKY---------------AIVMFDECH 204
++ I VA +QTL S R + +Y ++++ +E H
Sbjct: 181 SGEFQVSRHINVATVQTLASFLEEPPRDASPEKKRYHLKRRELVKRFLSSVSLLILEEAH 240
Query: 205 RTSAAEKFYEVG-ISLPQVYRFGLSATPWRRLRGE-EMKIEGVVGPIIYEVKAEDLINEG 262
+S + FY++ + + YR L+ATP+ + E M++ V G I +V + LI+ G
Sbjct: 241 ESSGSN-FYDIARLCINADYRLALTATPFMKDSTEANMRLMAVAGRIEIKVTEKYLIDRG 299
Query: 263 FLAKPKF---------EVIEYNSKMPA--------LADKYKELYEEAIMENEERNKAIVE 305
LAKP F + + +++ + ++ Y++ Y+ I+ N RN+AIV
Sbjct: 300 ILAKPYFLYHKIAYTPDEVRIRAELASKHLNFRVGMSTAYQKAYQLGIVYNLGRNEAIVR 359
Query: 306 KAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQS--PNRWEILEKFKNGEI 363
+A+ + G + V+ HG+IL++M+KE G+ +F+ +S R L G I
Sbjct: 360 EALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSLAAGRI 419
Query: 364 PVLV-STLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAV--IVDVKD-S 419
VL+ ST+L GVD+P + A+IL GGGK++V Q +GR LR K V I D D S
Sbjct: 420 DVLIGSTILDVGVDVPSVGAVILGGGGKAEVEMRQRVGRGLRAKKNQANVCFITDFIDVS 479
Query: 420 DPLLFTHFIERQ 431
+ L +H ER+
Sbjct: 480 NKYLMSHSYERK 491
>gi|10955703 unknown [Yersinia pestis] >gi|7467352|pir||T14676 hypothetical
protein - Yersinia pestis plasmid pMT1
>gi|2996312|gb|AAC13192.1| (AF053947) unknown [Yersinia
pestis]
Length = 492
Score = 150 bits (375), Expect = 3e-35
Identities = 130/468 (27%), Positives = 220/468 (46%), Gaps = 69/468 (14%)
Query: 29 LLSFRKDFGRWDKAESLYDPYTNTFPVGLLPRVKKFLNSKGYR-VKVKDERVIDGVKINS 87
+LS+ + G W ++++ N FP G V L G + V V+ E+ K N
Sbjct: 1 MLSYEVEAGDWKGTSTMFNWSKNAFPAGFAKPVAANLLKAGIKCVHVRKEKAPALGKPNP 60
Query: 88 T-----WNENYKLRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVH 142
+N +Y YQ + V+ ++E M + + G GK+ V + IGR L +
Sbjct: 61 VVNPFPYNPDYA---YQDQTVETLVREGMMIAQIATGGGKSNVACKAAARIGRMTLFLTT 117
Query: 143 TKELLYQWADKVKEIL------------GIEPGIIGDNKWSEG-DITVAMIQTLLS---- 185
L++Q A+ ++ + G + G+IG ++ I VA +QTL S
Sbjct: 118 RSVLMFQMAENFQKSIDYRAENGEPWLKGQKVGVIGSGEFQVSRHINVATVQTLASFLEE 177
Query: 186 --RGTDKLQNKY---------------AIVMFDECHRTSAAEKFYEVG-ISLPQVYRFGL 227
R + +Y ++++ +E H +S + FY++ + + YR L
Sbjct: 178 PPRDASPEKKRYHLKRRELVKRFLSSVSLLILEEAHESSGSN-FYDIARLCINADYRLAL 236
Query: 228 SATPWRRLRGE-EMKIEGVVGPIIYEVKAEDLINEGFLAKPKF---------EVIEYNSK 277
+ATP+ + E M++ V G I +V + LI+ G LAKP F + + ++
Sbjct: 237 TATPFMKDSTEANMRLMAVAGRIEIKVTEKYLIDRGILAKPYFLYHKIAYTPDEVRIRAE 296
Query: 278 MPA--------LADKYKELYEEAIMENEERNKAIVEKAIELANQGHRVLIDVKRIDHGEI 329
+ + ++ Y++ Y+ I+ N RN+AIV +A+ + G + V+ HG+I
Sbjct: 297 LASKHLNFRVGMSTAYQKAYQLGIVYNLGRNEAIVREALMYKSHGLNCMTLVRLKRHGQI 356
Query: 330 LVKMLKERGVNAEFLSSQS--PNRWEILEKFKNGEIPVLV-STLLKEGVDIPEISAIILA 386
L++M+KE G+ +F+ +S R L G I VL+ ST+L GVD+P + A+IL
Sbjct: 357 LMEMMKESGLKVDFIYGESNQTTRQAKLSSLAAGRIDVLIGSTILDVGVDVPSVGAVILG 416
Query: 387 GGGKSDVMTIQTIGRALRPKAGGEAV--IVDVKD-SDPLLFTHFIERQ 431
GGGK++V Q +GR LR K V I D D S+ L +H ER+
Sbjct: 417 GGGKAEVEMRQRVGRGLRAKKNQANVCFITDFIDVSNKYLMSHSYERK 464
>gb|AAK40796.1| DNA repair protein rad25 [Sulfolobus solfataricus]
Length = 444
Score = 148 bits (371), Expect = 9e-35
Identities = 107/366 (29%), Positives = 188/366 (51%), Gaps = 46/366 (12%)
Query: 91 ENYKLRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQW 150
+ KLR+YQ++A+ +K K+G++ +P G GKTV+GL+ I I + LIIV T +LL QW
Sbjct: 65 DRIKLREYQQEALNAWLKSKLGIIVIPTGGGKTVIGLKAIALIRLATLIIVPTIDLLQQW 124
Query: 151 ADKVKEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAE 210
+ ++E+LG+E G +G ITV + ++ +K+ NK+ +V+FDE H +E
Sbjct: 125 YENIRELLGVEAGRVGGGYDELKGITVITYDSAYTQ-LEKIGNKFGLVIFDEVHHL-PSE 182
Query: 211 KFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLIN---------- 260
+ + L YR GL+ATP R G +VGP++Y + +L+
Sbjct: 183 GYSIIAQGLAAPYRLGLTATP-ERSDGRHKLYPSLVGPLVYRITVSNLVGKYLSSFEIQR 241
Query: 261 --------------------EGFLAKPKFEVIEYN--SKMPALADKYKELYEEAIMENEE 298
+ FL++ ++ N +++ LA K KE E + +E
Sbjct: 242 IYVNLTEDEEKLYRHYRGILKKFLSQRNLKLKSLNDFNRLLRLAVKDKEAREALLAWHEA 301
Query: 299 -----RNKAIVEKAIELANQ--GHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNR 351
+KA +EK +L + G +++I + + ++ ++ + + A + R
Sbjct: 302 LKIAVNSKAKLEKLKDLLKELNGEKIIIFTR---NTSMVYEISRLFLIPAVTYKTNKQER 358
Query: 352 WEILEKFKNGEIPVLV-STLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGE 410
EILEKF++G+ V+V S++L EG+D+P+ S I+ GG + IQ +GR LR K +
Sbjct: 359 IEILEKFRSGKYNVIVTSSVLDEGIDVPDASIGIVLGGYGTSRQFIQRLGRILRKKENKK 418
Query: 411 AVIVDV 416
A ++++
Sbjct: 419 ARLIEI 424
>pir||B75006 DNA repair protein rad25 PAB1312 - Pyrococcus abyssi (strain Orsay)
>gi|5459002|emb|CAB50488.1| (AJ248288) DNA repair
protein RAD25 [Pyrococcus abyssi]
Length = 453
Score = 124 bits (309), Expect = 2e-27
Identities = 109/421 (25%), Positives = 199/421 (46%), Gaps = 59/421 (14%)
Query: 36 FGRWDKAESLYDPYTNTFPVGLLPRVKKFLNSKGYRVKVKDERVIDGVKINSTWNE-NYK 94
+ RWD+ Y + + +FL S+G ++ V++ + +++ ++
Sbjct: 20 YARWDERCRCYRALAYKYR-----DIVEFLESEGIEF---EDYVLENALPSRVYDDVEFE 71
Query: 95 LRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKV 154
LR YQ++AV+ ++EK GV+ LP G+GKT+V + II + S L+IV T LL QW +++
Sbjct: 72 LRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERL 131
Query: 155 KEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYE 214
EI G + G K ITV + + L +K+ +++FDECH +E +
Sbjct: 132 -EIFG-DVGEFSGRKKELKPITVTTYDSAYI-NAEFLGDKFFLLIFDECHHL-PSEAYRN 187
Query: 215 VGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAK-------- 266
+ YR GL+A P R ++ + ++GPI+Y+ +L+ +LA
Sbjct: 188 IAQMSAAPYRLGLTAFPERADNLHDL-LPDLIGPIVYKKAPRELMGT-YLAPYELVRVKV 245
Query: 267 -----------PKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAI-----VEKAIEL 310
++V + L K E +++ +M NKA +E+A ++
Sbjct: 246 PLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKI 305
Query: 311 A----------------NQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEI 354
A ++G +++I + + E++ ++ ++ + A + R EI
Sbjct: 306 ALGSKAKIEELRKILERHRGEKIIISTR---YNELVYEISRKFLIPAITHKTSKEERVEI 362
Query: 355 LEKFKNGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVI 413
L KF+ G+ +VS+ +L EG+D+P+ S I+ G S +Q +GR LRP G E I
Sbjct: 363 LRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAI 422
Query: 414 V 414
+
Sbjct: 423 L 423
>pir||C71156 probable helicase protein PH0450 - Pyrococcus horikoshii
>gi|3256853|dbj|BAA29536.1| (AP000002) 449aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 449
Score = 124 bits (308), Expect = 2e-27
Identities = 112/422 (26%), Positives = 200/422 (46%), Gaps = 61/422 (14%)
Query: 36 FGRWDKAESLYDPYTNTFPVGLLPRVKKFLNSKGYRVKVKDERVIDGVKINSTWNEN--Y 93
F RWD+ + Y + + +FL S+G ++ V+D V I S + E+ +
Sbjct: 20 FARWDERCNCYRALAYKYR-----DIVEFLKSEGVDF---EDHVLDNV-IPSPFYEDVEF 70
Query: 94 KLRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADK 153
+LR YQ++AV+ + EK G++ LP GSGKT++ + I+ + S L++V T LL QW ++
Sbjct: 71 ELRDYQREAVERWMMEKRGIIVLPTGSGKTIIAMEIMRRLSVSTLVVVPTLALLEQWKER 130
Query: 154 VKEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFY 213
+ I G E G K ITV + + L +K+ +++FDECH AE +
Sbjct: 131 L-SIFG-EVGEFSGKKKELKPITVTTYDSAYI-NAELLGDKFMLIIFDECHHL-PAEAYR 186
Query: 214 EVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLA-------- 265
+ YR GL+A P R E+ + ++GP++Y+ +LI +LA
Sbjct: 187 NIAQMSVAPYRLGLTAFPERSDNLHEL-LPDLIGPVVYKKGPGELIGT-YLAPYEIVRIK 244
Query: 266 -----------KPKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAI-----VEKAIE 309
K + + + + + K E ++ +M+ NKA +EK+ +
Sbjct: 245 VPLSREEREEYKKYYGIFKRYLEESGIEIKSLEDFQRIVMKTGMDNKAFKALRALEKSRK 304
Query: 310 LA----------------NQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWE 353
+A ++G +++I + + E++ ++ ++ + A + R E
Sbjct: 305 IALGSKGKIEELRKILERHRGEKIIIFTR---YNELVYEISRKFLIPAITHKTDKKERSE 361
Query: 354 ILEKFKNGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAV 412
IL+KF+ G +VS+ +L EG+D+P+ S ++ G S IQ +GR LR G E
Sbjct: 362 ILKKFRKGIYKAVVSSQVLDEGIDVPDASVGVIISGTGSPRELIQRLGRILRSAPGKEKA 421
Query: 413 IV 414
I+
Sbjct: 422 IL 423
>emb|CAC12145.1| (AL445066) DNA repair protein RAD25 related protein [Thermoplasma
acidophilum]
Length = 453
Score = 120 bits (298), Expect = 3e-26
Identities = 116/416 (27%), Positives = 190/416 (44%), Gaps = 52/416 (12%)
Query: 59 PRVKKFLNSKGYRVKVKDERVIDGVKINSTWNENYKLRKYQKKAVKLAIKEKM-GVLALP 117
PR+ F G +RV+D +N N LR YQ +A++ K M G + LP
Sbjct: 42 PRILSFFRDAGIDAV---DRVMDRKHLNL--NGRISLRPYQLQALEEWKKYGMRGTVVLP 96
Query: 118 VGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITV 177
+GKT +G+ I + ALI+V T +LL QW +++E G+EPG IG + E DITV
Sbjct: 97 TAAGKTHIGMAAIQAVSERALILVPTIDLLSQWKKRIQETFGVEPGQIGGGEHDERDITV 156
Query: 178 AMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRG 237
+ + +K N++++++ DE H A+EK + + +R GL+AT + R G
Sbjct: 157 STYDSAYLM-AEKYGNRFSLIIADEVHHL-ASEKLRMIPLMYTAPFRMGLTAT-YERTDG 213
Query: 238 EEMKIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENE 297
+ +E ++G I+E+ E++ + +LA I AD + Y E +
Sbjct: 214 LQKVLEQIMGGKIFELGYEEI--DEYLADYTIARIPIELSDEEYADYQR--YHEIFVSYL 269
Query: 298 ERNKAIV------EKAIELA--NQGHRVLI------DVKRIDHGE---ILVKMLKERG-- 338
R++ ++ EK I + +G LI ++ G+ I + K RG
Sbjct: 270 RRHRMVMRGPWDFEKFIRSSWTPEGREALIAWRKSREIAFNSRGKMEMIRTILSKHRGEK 329
Query: 339 -------------VNAEFL------SSQSPNRWEILEKFKNGEI-PVLVSTLLKEGVDIP 378
++ EFL + R +I F+ G I + S +L EGVD P
Sbjct: 330 TLIFAEDTETAYTISKEFLIPAITYLTDKEEREKIPAMFREGRITAIATSRVLDEGVDFP 389
Query: 379 EISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDVKDSDPLLFTHFIERQKAL 434
+ S I+ G S Q +GR LRP AG +AV+ ++ ++ F R+K +
Sbjct: 390 DASVAIVVSGSGSMRQFRQRLGRILRPSAGKKAVMYELVTAETSEFGVSRRRRKGV 445
>gb|AAK41233.1| DNA repair protein rad25 [Sulfolobus solfataricus]
Length = 551
Score = 117 bits (290), Expect = 3e-25
Identities = 106/360 (29%), Positives = 178/360 (49%), Gaps = 40/360 (11%)
Query: 92 NYKLRKYQKKAVKLAIKE-KMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQW 150
N +LR+YQ++A++ IK GV+ALP G+GKTVVG++ I I + LI+ TKE + QW
Sbjct: 161 NGQLREYQREAIENWIKNGNKGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQW 220
Query: 151 ADKVKEILGIEP--GIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSA 208
+ + + P G+ + IT+ T R +L +K+ +++ DE H
Sbjct: 221 KEAILKFTSKRPDIGLYYSEEKRIRPITITTYHTAY-RHLPQLFDKFYLLIVDEVHHL-P 278
Query: 209 AEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKPK 268
A+KF + L YR GLSATP R + ++ ++G IIY +L G+LA
Sbjct: 279 ADKFKLIAEGLIAPYRMGLSATPHRE-DNKHNELFSLIGGIIYYKSVTELAKLGYLA--S 335
Query: 269 FEVIE------------YN---SKMPALAD--KYKELYEEAIMENEERNKAI-----VEK 306
+E+I+ YN ++ AL+ K EL E +E +A+ + K
Sbjct: 336 YEIIQKKVRLTLEERKRYNELLNRFKALSKGRKVSELIELVKKGDESAIEAMRVYNEMRK 395
Query: 307 AIELANQGHRVLIDVKRIDHGEIL-----VKMLKE--RGVNAEFLSSQ--SPNRWEILEK 357
+ A++ + L ++ + + G+IL + +E + N+ L+ + R +L
Sbjct: 396 IVNFASEKMKALDEILKSEKGKILIFTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVT 455
Query: 358 FKNGEIPVLV-STLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDV 416
FK VLV +T+ EG+DIP+ + I+ G S IQ +GR +RP G +A + ++
Sbjct: 456 FKTMNAGVLVLTTVGDEGIDIPDANVGIIVTGTSSRRQFIQRLGRIMRPYNGKQAKLYEI 515
>pir||B72707 hypothetical protein APE1073 - Aeropyrum pernix (strain K1)
>gi|5104743|dbj|BAA80058.1| (AP000060) 539aa long
hypothetical protein [Aeropyrum pernix]
Length = 539
Score = 107 bits (264), Expect = 3e-22
Identities = 105/360 (29%), Positives = 163/360 (45%), Gaps = 41/360 (11%)
Query: 94 KLRKYQKKAVKLAIKEK-MGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWAD 152
+LR YQ++A++ K GV+ LP G+GKTVV + + G +LI+V+T++ + QW D
Sbjct: 166 ELRDYQEEALEAWRKAGGRGVIVLPTGAGKTVVAIAAVAWAGVWSLIVVYTRDHVRQWID 225
Query: 153 KVKEILGIEPGIIGDNKWSE---GDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAA 209
+ ++G E ITV QT R D+L + ++FDE H A
Sbjct: 226 AFRRFTDAH-SLVGAYYGEEKRLAPITVTTYQTAY-RHIDRLAPLFPFLVFDEAHHIPA- 282
Query: 210 EKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLA---- 265
+KF + + P YR GLSAT R G ++ +VG ++Y +L +G+LA
Sbjct: 283 DKFKRIASASPAPYRMGLSATIERE-DGRHEEVYSLVGGVVYSSSPGELTRKGYLAPFVI 341
Query: 266 -KPKFEVIEYNSKM-PALADKYKELYE----EAIMENEERNKAIVEKAIELANQGHRVL- 318
+ K E+ E ++ L KY+ L E I+E+ R +AI + + ++
Sbjct: 342 RRVKVELEEEEKRLYEDLKRKYRILARGRSFEKILEDARRGDPTAIEAIRVNTRMKEIVQ 401
Query: 319 IDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEI---------------------LEK 357
+ +I E LV+ RG + EI L K
Sbjct: 402 LSESKIRAVEKLVREELSRGSKVIVFTQYRRQAEEIARRTGALLLHGGLERRVREATLAK 461
Query: 358 FKNGEIPVLVSTLL-KEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVDV 416
F+ + LV T + EG+DIP+ + IL G S IQ +GR LRP G AV+ +V
Sbjct: 462 FRALKAGALVVTTVGDEGLDIPDANVGILVSGTGSRRQFIQRLGRLLRPGEGKRAVLYEV 521
>gi|11497970 DNA repair protein RAD25 [Archaeoglobus fulgidus]
>gi|7446073|pir||F69294 DNA repair protein RAD25 homolog
- Archaeoglobus fulgidus >gi|2650278|gb|AAB90879.1|
(AE001080) DNA repair protein RAD25 [Archaeoglobus
fulgidus]
Length = 452
Score = 106 bits (262), Expect = 5e-22
Identities = 101/365 (27%), Positives = 169/365 (45%), Gaps = 51/365 (13%)
Query: 95 LRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKV 154
LR YQ+KA++ + +K G + LP GSGKT V + I+E+ LI+V T L QW +++
Sbjct: 74 LRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERL 133
Query: 155 ----KEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAE 210
+E +G G I + K +TV+ + +KL N++ +++FDE H AE
Sbjct: 134 GIFGEEYVGEFSGRIKELK----PLTVSTYDSAYV-NAEKLGNRFMLLIFDEVHHL-PAE 187
Query: 211 KFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDL---------INE 261
+ ++ +R GL+AT + R G ++ VVG ++E+ + L I
Sbjct: 188 SYVQIAQMSIAPFRLGLTAT-FEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKR 246
Query: 262 GFLAKPKFEVIEYNSKMP----------------------ALADKYKELYEEAIMENEE- 298
F+ + E +EY + +A Y E EA+ EE
Sbjct: 247 IFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEA 306
Query: 299 -----RNKAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWE 353
+K + K E+ + HR + H E++ ++ K + A + R E
Sbjct: 307 RRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREE 365
Query: 354 ILEKFKNGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAG-GEA 411
ILE F+ G +VS+ +L EG+D+P+ + ++ G S IQ +GR LRP G EA
Sbjct: 366 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 425
Query: 412 VIVDV 416
V+ ++
Sbjct: 426 VLYEL 430
>gi|6320539 Ydr332wp [Saccharomyces cerevisiae] >gi|2131433|pir||S59797
hypothetical protein YDR332w - yeast (Saccharomyces
cerevisiae) >gi|914990|gb|AAB64767.1| (U32517) Ydr332wp
[Saccharomyces cerevisiae]
Length = 689
Score = 104 bits (257), Expect = 2e-21
Identities = 92/344 (26%), Positives = 169/344 (48%), Gaps = 39/344 (11%)
Query: 95 LRKYQKKAVKLAIK------EKMGVLALPVGSGKTVVGLRIIHEIGRS----------AL 138
LR YQ+ A+ + +++GV +L G GKTV+ +I+++ ++ +L
Sbjct: 33 LRDYQQDAIDACVNSIRQGTKRIGV-SLATGGGKTVIFSNLINQLRQNYFKERQGNFKSL 91
Query: 139 IIVHTKELLYQWADKVKEI-----LGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQN 193
I+VH +EL Q +K+I + IE G D + D+ VA +QTL+ R N
Sbjct: 92 ILVHRRELALQATATLKKIFPDLKVHIEMGKY-DCDIEDSDVIVASVQTLIRRLHKYDTN 150
Query: 194 KYAIVMFDECHRTSAAE-----KFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGP 248
+++ DE H + A ++ + ++ G SAT R ++ + V+
Sbjct: 151 SVNLIIIDEAHHSVANSYRSILDHFKASTAETKIPVIGFSAT---FERADKRALSMVMDK 207
Query: 249 IIYEVKAEDLINEGFLAKPKFEVIEYN---SKMPALADKYKELYEEAIMENEERNKAIVE 305
I+Y ++I++ +L + KF ++ S + + AD ++ ++M +E N+ I++
Sbjct: 208 IVYHRGILEMIDDKWLCEAKFTSVKIEADLSDVKSTADDFQLAPLSSLMNTKEINEVILK 267
Query: 306 KAIELANQGHRVLIDVKRID--HGEILVKMLKERGVNAEFLSSQSPN--RWEILEKFKNG 361
+ + + +D H + L K+ K+ G+N ++++S + R I++KFKNG
Sbjct: 268 TYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFKNG 327
Query: 362 EIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALR 404
E VL++ + EG D+P I I+L KS + IQ IGR LR
Sbjct: 328 ETEVLMNCGIFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRGLR 371
>gi|9632837 uvsW [Bacteriophage T4] >gi|731087|sp|P20703|UVSW_BPT4 DNA HELICASE
UVSW (DAR PROTEIN)
>gi|5354461|gb|AAD42668.1|AF158101_255 (AF158101) uvsW
[Bacteriophage T4]
Length = 587
Score = 103 bits (255), Expect = 4e-21
Identities = 109/450 (24%), Positives = 202/450 (44%), Gaps = 59/450 (13%)
Query: 19 DPKVYFQIYNLLSFRKD---------FGRWDKAESLYDPYTNTFPVGLLPRVKKFLNSKG 69
+ + ++ + SF D +G WD L D Y P GL+ ++KKF ++ G
Sbjct: 18 EESTFHELRDFFSFEADGYRFNPRFRYGNWDGRIRLLD-YNRLLPFGLVGQIKKFCDNFG 76
Query: 70 YRVKVKDERVIDGVKIN----STW---------NENYKLRKYQKKAVKLAIKEKMGVLAL 116
Y+ + D ++ + +++ W N+ + YQK AV + + +L L
Sbjct: 77 YKAWI-DPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 135
Query: 117 PVGSGKTVVGLRI----IHEIGRSALIIVHTKELLYQWADKVKE--------ILGIEPGI 164
P +GK+++ + + LIIV T L Q AD + I I G
Sbjct: 136 PTSAGKSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 195
Query: 165 IGDNKW-SEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVY 223
D+K+ ++ + V QT++ + + +++ ++M DECH + + ++
Sbjct: 196 SKDDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATGKSISSIISGLNNCMF 254
Query: 224 RFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKPKFEVI------EYNSK 277
+FGLS + R + M+ G+ G I V L+ +G + + K I E+ +K
Sbjct: 255 KFGLSGS-LRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTK 313
Query: 278 MPALADKYKELYEEA--IMENEERNKAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLK 335
+ K K EE I +RNK I + AI+LA + + K + HG+ + ++K
Sbjct: 314 L-----KGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIK 368
Query: 336 ERGVNAEFLSSQSPNRWEILEKF--KNGEIPVLVST--LLKEGVDIPEISAIILAGGGKS 391
++S + + K +NG+ ++V++ + G+ + + ++LA G KS
Sbjct: 369 NEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKS 428
Query: 392 DVMTIQTIGRALRPKAGGE--AVIVDVKDS 419
++ +QTIGR LR K G + A + D+ DS
Sbjct: 429 KIIVLQTIGRVLR-KHGSKTIATVWDLIDS 457
>pir||B82176 helicase-related protein VC1636 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9656148|gb|AAF94787.1| (AE004241)
helicase-related protein [Vibrio cholerae]
Length = 657
Score = 102 bits (252), Expect = 8e-21
Identities = 96/353 (27%), Positives = 162/353 (45%), Gaps = 33/353 (9%)
Query: 93 YKLRKYQKKAVKLAIK-----EKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELL 147
Y LR YQ +VK + V+ LP G+GK++V + L++ H KEL+
Sbjct: 65 YTLRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 124
Query: 148 YQWADKVKEILGIEPGIIG---DNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECH 204
Q K E G+ I K ++ + A +Q+++ R + QN++++++ DECH
Sbjct: 125 EQNHAKY-EGYGLTGAIFSAGLGRKETDQQVVFASVQSVV-RNLSEFQNQFSLLVIDECH 182
Query: 205 RT-----SAAEKFYEVGISL-PQVYRFGLSATPWRRLRG--EEMKIEGVVGP-------- 248
R S+ +K + L P + GL+ATP+R G + G+V
Sbjct: 183 RVPDDKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRD 242
Query: 249 IIYEVKAEDLINEGFLAKPKF---EVIEYNSKM--PALADKYKELYEEAIMENEER-NKA 302
I+E+ L++EGFL + V+ Y+ PA +Y+E + ++E +R
Sbjct: 243 CIFELPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQ 302
Query: 303 IVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKNGE 362
IV + IELA V+I + H E + ++L + +P R I++ FK +
Sbjct: 303 IVAQIIELAKARQGVMIFAATVRHAEEIYRLLPTEHAALVIGDTPTPERDRIIQAFKQQQ 362
Query: 363 IPVLVS-TLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIV 414
I LV+ ++L G D P + I + +S + Q +GR LR AG +V
Sbjct: 363 IKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLV 415
>gi|10803640 ORF H1047 [Halobacterium sp. NRC-1] >gi|7446116|pir||T08310
helicase homolog H1047 - Halobacterium sp. (strain
NRC-1) plasmid pNRC100 >gi|2822371|gb|AAC82877.1|
(AF016485) ORF H1047 [Halobacterium sp. NRC-1]
>gi|10584184|gb|AAG20805.1| (AE005148) DNA repair
protein; Rad25 [Halobacterium sp. NRC-1]
Length = 469
Score = 100 bits (246), Expect = 4e-20
Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 51/355 (14%)
Query: 96 RKYQKKAVKL-AIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKV 154
R YQ+ A+ ++ G + LP GSGKT + ++ I + S L++V T +LL QW +
Sbjct: 85 RDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAIADASVSTLVVVPTIDLLNQWHATL 144
Query: 155 KEILG----IEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAE 210
G E G++G + DITV + R ++ +++ +++ DE H A
Sbjct: 145 TNAFGDQLPHEIGVLGGGSHNVTDITVTTYDSAY-RYINEYGDQFGLLVVDEVHHL-PAP 202
Query: 211 KFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKPKFE 270
+ ++ YR GL+AT + R GE +E ++GP++YE ++L E +L+ ++E
Sbjct: 203 TYQQIPEMTIAPYRLGLTAT-YERTDGEHNVLEDLIGPVVYEENVDELAGE-YLS--EYE 258
Query: 271 VI----------------EYNSKMPAL---------ADKYKELYEEAIMENEERNKAIV- 304
I EY L D Y+E + + + R I
Sbjct: 259 TIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQEFLKRTSYDPDGRRALIAK 318
Query: 305 EKAIELANQGHRVL--ID--VKRIDHGEILVKMLKE---RGVNAEFL------SSQSPNR 351
++A E+A + L +D +KR + ++ ++ EF+ +Q+ R
Sbjct: 319 QRAEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDISQEFIVPCITHQTQTDER 378
Query: 352 WEILEKFKNGEIPVLV-STLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRP 405
EILE+F+ GE +LV S +L EG+D+P + I+ G S Q +GR LRP
Sbjct: 379 TEILERFRTGEYSMLVTSQVLDEGIDVPAANVGIILSGSASKRQYAQRLGRILRP 433
>gi|9631722 similar to phage T5 helicase, corresponds to Swiss-Prot Accession
Number P11107 [Paramecium bursaria Chlorella virus 1]
>gi|7461298|pir||T17644 hypothetical protein A153R -
Chlorella virus PBCV-1 >gi|1131497|gb|AAC96521.1|
(U42580) similar to phage T5 helicase, corresponds to
Swiss-Prot Accession Number P11107 [Paramecium bursaria
Chlorella virus 1]
Length = 459
Score = 98.3 bits (241), Expect = 2e-19
Identities = 93/330 (28%), Positives = 150/330 (45%), Gaps = 20/330 (6%)
Query: 112 GVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKVKEILGIEP--GIIGDNK 169
G+L+L G GKT + ++ +I+VH L Q+ + +K+++ I GD
Sbjct: 114 GILSLDTGYGKTFCSIYTAVKLKVKTMILVHKTFLADQFEESIKKLVPTAKISKIRGDEC 173
Query: 170 WSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSA 229
+ GD + MIQTLLSR + +++ DE H + AE F + Y GL+A
Sbjct: 174 DTSGDFIICMIQTLLSRKYNAFDGIGCLIL-DEAHH-APAESFSQAMFGTSFKYVIGLTA 231
Query: 230 TPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELY 289
TP+R+ G + + G I +EV+ + + +F EY K P + + Y
Sbjct: 232 TPFRK-DGLSRVMHWLFGKIAFEVRRSGQSHVN-VKITQFTHPEYQ-KPPPINRRGDLCY 288
Query: 290 EEAIM---ENEERNKAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSS 346
I + +R I E+ +A G VL+ R H + + LK GV+A
Sbjct: 289 TSLITKICDIPDRTVFIAEETKRVAESGRYVLVLSHRRGHAMAICETLKTLGVDAGTYLG 348
Query: 347 QSPNRWEILEKFKNGEIPVLVSTLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPK 406
++ ++ +L EG D P +SA+ILA SDV +Q +GR LR
Sbjct: 349 GDKIAPDV-------QVVCATYSLASEGYDNPRLSALILATPS-SDV--VQAVGRILRGG 398
Query: 407 AGGEAVIVDVKDSDPLLFTHFIERQKALKQ 436
+G + VIVD+ D L F+ +R+ K+
Sbjct: 399 SGNDPVIVDIVDQYSLFFSQLAKRKNTYKK 428
>pir||E70815 hypothetical protein Rv0861c - Mycobacterium tuberculosis (strain
H37RV) >gi|2916920|emb|CAA17667.1| (AL022004)
hypothetical protein Rv0861c [Mycobacterium
tuberculosis]
Length = 542
Score = 92.8 bits (227), Expect = 7e-18
Identities = 101/375 (26%), Positives = 168/375 (43%), Gaps = 35/375 (9%)
Query: 87 STWNENYKLRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKEL 146
S E ++LR YQ+ A GV+ LP G+GKT+VG + + G + LI+V
Sbjct: 167 SLHQEGWQLRDYQRLAADSFWAGGSGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVA 226
Query: 147 LYQWADKVKEILGIEPGIIGDNKWSEGDI---TVAMIQTLLSRGTDKLQN-------KYA 196
QW ++ + IG+ +I T++ Q + R + ++ +
Sbjct: 227 ARQWKRELVARTSLTENEIGEFSGERKEIRPVTISTYQMITRRTKGEYRHLELFDSRDWG 286
Query: 197 IVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAE 256
++++DE H A + + L R GL+AT R G E + ++GP Y+ +
Sbjct: 287 LIIYDEVHLLPA--PVFRMTADLQSKRRLGLTATLIRE-DGREGDVFSLIGPKRYDAPWK 343
Query: 257 DLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEER--------NKAIVEKAI 308
D+ +G++A E +E M D + +Y A E EER K V K+I
Sbjct: 344 DIEAQGWIAPA--ECVEVRVTM---TDSERMMY--ATAEPEERYRICSTVHTKIAVVKSI 396
Query: 309 ELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKNGEIPVL-V 367
+ + L+ +D L ++ E G S+++ R + + F+ GE+ L V
Sbjct: 397 LAKHPDEQTLVIGAYLDQ---LDELGAELGAPVIQGSTRTSEREALFDAFRRGEVATLVV 453
Query: 368 STLLKEGVDIPEIS-AIILAGGGKSDVMTIQTIGRALRPKA-GGEAVIVDVKDSDPLLFT 425
S + +D+PE + A+ ++G S Q +GR LRPKA GG A+ V D L
Sbjct: 454 SKVANFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKADGGGAIFYSVVARDSLDAE 513
Query: 426 HFIERQKAL-KQYYG 439
+ RQ+ L +Q YG
Sbjct: 514 YAAHRQRFLAEQGYG 528
>gb|AAA16381.1| (U00008) yejH [Escherichia coli]
Length = 403
Score = 92.4 bits (226), Expect = 9e-18
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 47/354 (13%)
Query: 93 YKLRKYQKKAVKLAIK-----EKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELL 147
+ LR YQ++AV + + V+ LP G+GK++V + L++ H KEL+
Sbjct: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62
Query: 148 YQWADKVKEILGIEPGIIG---DNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECH 204
Q K + LG+E I K S G + +Q+ ++R D Q ++++++ DECH
Sbjct: 63 AQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQS-VARNLDAFQGEFSLLIVDECH 120
Query: 205 RTSAAE--KFYEVGISL----PQVYRFGLSATPWR-------------RLRGEEMKIEGV 245
R E ++ ++ L P + GL+ATP+R +RG+E + +
Sbjct: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE---KAL 177
Query: 246 VGPIIYEVKAEDLINEGFLAKPK---FEVIEYNSKMPALADKYKELYEEAIMENEERNKA 302
IYE+ +I G+L P+ V++Y+ L + L+ EA + E + +
Sbjct: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYD--FSRLQAQSNGLFSEADLNRELKKQQ 235
Query: 303 -----IVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSP--NRWEIL 355
I+ + +E A V+I ++H + +V +L +A ++ +P R ++
Sbjct: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLI 293
Query: 356 EKFKNGEIPVLVS-TLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAG 408
E FK LV+ +L G D P + I + +S + Q +GR LR G
Sbjct: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347
>sp|P33919|YEJH_ECOLI HYPOTHETICAL 66.4 KD PROTEIN IN RSUA-RPLY INTERGENIC REGION
>gi|7446090|pir||G64987 yejH protein - Escherichia coli
(strain K-12) >gi|1788511|gb|AAC75245.1| (AE000308)
putative ATP-dependent helicase [Escherichia coli K12]
Length = 586
Score = 92.4 bits (226), Expect = 9e-18
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 47/354 (13%)
Query: 93 YKLRKYQKKAVKLAIK-----EKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELL 147
+ LR YQ++AV + + V+ LP G+GK++V + L++ H KEL+
Sbjct: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62
Query: 148 YQWADKVKEILGIEPGIIG---DNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECH 204
Q K + LG+E I K S G + +Q+ ++R D Q ++++++ DECH
Sbjct: 63 AQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQS-VARNLDAFQGEFSLLIVDECH 120
Query: 205 RTSAAE--KFYEVGISL----PQVYRFGLSATPWR-------------RLRGEEMKIEGV 245
R E ++ ++ L P + GL+ATP+R +RG+E + +
Sbjct: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE---KAL 177
Query: 246 VGPIIYEVKAEDLINEGFLAKPK---FEVIEYNSKMPALADKYKELYEEAIMENEERNKA 302
IYE+ +I G+L P+ V++Y+ L + L+ EA + E + +
Sbjct: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYD--FSRLQAQSNGLFSEADLNRELKKQQ 235
Query: 303 -----IVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSP--NRWEIL 355
I+ + +E A V+I ++H + +V +L +A ++ +P R ++
Sbjct: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLI 293
Query: 356 EKFKNGEIPVLVS-TLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAG 408
E FK LV+ +L G D P + I + +S + Q +GR LR G
Sbjct: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347
>gb|AAF69763.1| (AF068771) similar to RAD25 [Synechocystis PCC9413]
Length = 449
Score = 91.3 bits (223), Expect = 2e-17
Identities = 98/363 (26%), Positives = 158/363 (42%), Gaps = 66/363 (18%)
Query: 94 KLRKYQKKAVKL-AIKE--KMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQW 150
++R Y ++ L A KE + G++ LP +GKT + + RS LI+V T +L++QW
Sbjct: 26 EMRPYAHQSEALQAWKEAGRQGIVVLPTAAGKTYLAQLAMQATPRSTLIVVPTLDLMHQW 85
Query: 151 -ADKVKEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHR--TS 207
A + E G++G I VA + + L ++YA +FDECH T
Sbjct: 86 YAQLLAAFPDAEIGLLGGGSRDRTSILVATYDSAAIH-AESLGSQYAFAIFDECHHLPTD 144
Query: 208 AAEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKP 267
E I+ YR GL+AT R G + + ++G I+Y+ E+L LA
Sbjct: 145 FYRPIAEYSIA---PYRLGLTAT-IERSDGRDRDLLNLIGDIVYQKTPEELAGTA-LAHH 199
Query: 268 KFEVIEYNSKMPALADKYKELYEEAIMENEERNKAIVEKAIELANQ-------------- 313
K I+ L+ + +E Y+ I +ERN+ + + I L +
Sbjct: 200 KIAQIKVK-----LSVRERETYQRLI---QERNEFLRSQNISLGSMEGWKMFVQASARSA 251
Query: 314 -------GHRVLIDVKRIDHGE--ILVKMLKE--------------------RGVNAEFL 344
HR ++ I G+ +L+ +L + + + +
Sbjct: 252 AGRRAMLAHRQAREIALITDGKLRVLINLLGQHYPESTIIFTADNATVYKISKALLIPAI 311
Query: 345 SSQSP--NRWEILEKFKNGEIPVLV-STLLKEGVDIPEISAIILAGGGKSDVMTIQTIGR 401
+ Q+P R EIL +FK G+ L+ S +L EGVD+PE I+ G S IQ +GR
Sbjct: 312 THQTPVKERHEILTRFKAGDYKTLIASHVLNEGVDVPEARIAIVLSGTGSRREYIQRLGR 371
Query: 402 ALR 404
LR
Sbjct: 372 VLR 374
>sp|P11107|VD10_BPT5 PROBABLE HELICASE (D10 PROTEIN) >gi|76137|pir||WABPT5 gene D10
protein - phage T5 >gi|15409|emb|CAA31398.1| (X12930)
D10 protein [Bacteriophage T5]
>gi|2791560|emb|CAA04582.1| (AJ001191) Probable helicase
(D10 protein) [Bacteriophage T5]
Length = 450
Score = 90.9 bits (222), Expect = 3e-17
Identities = 98/416 (23%), Positives = 186/416 (44%), Gaps = 40/416 (9%)
Query: 26 IYNLLSFRKDFGRWD--KAESLY--DPYTNTFPV-----GLLPRVKKF--------LNSK 68
I N F+ D WD ++ Y + T+ +P+ G++ + K+ L++K
Sbjct: 5 ISNKAYFKPDDELWDYCSKQTTYHIETMTSKYPIMYKNSGVVAKEIKWIPITRLDLLDAK 64
Query: 69 GYRVKVKDERVIDGVKINSTWNENYKLRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLR 128
G + ++ D+R + V I +KLR+ + + + + P G GKT++ L
Sbjct: 65 GIKYELVDKRTLAPVDIPKP---KFKLREEDQLPIYEECDDTCIINGKP-GFGKTILALA 120
Query: 129 IIHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWS-EGDITVAMIQTLLSRG 187
+ ++ G+ L+I + WA +V++ G EPGIIG K++ + I V+ IQT +++
Sbjct: 121 LAYKFGQKTLVICTNTSIREMWAAEVRKWFGFEPGIIGSGKYNIDPPIVVSNIQT-VNKH 179
Query: 188 TDKLQNKYAIVMFDECHRTSAA--EKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGV 245
+ L + V+ DE H A F E+ + Y+ GLS T +R G ++ +
Sbjct: 180 ANNLSKVFGTVIVDEVHHCVATTFTNFLEISCAR---YKIGLSGT-LKRKDGLQVMFKDF 235
Query: 246 VGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAIVE 305
G I+ + + + N +P L + + E + I+
Sbjct: 236 FGYKIFSPPVNNTVAPTIHRYSVPVELSGNQNVP------WALRANDVYNHPEYRETIIN 289
Query: 306 KAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFL--SSQSPNRWEILEKFKNGEI 363
A N GH+VLI R + + +++ L +RGV + ++ +R +I E G
Sbjct: 290 LAHLYVNMGHKVLIVSDRTELIQTILEALTQRGVTTYEIIGATHLDDRLKIQEDIAKGGP 349
Query: 364 PVLVS--TLLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGG-EAVIVDV 416
VL + ++ EG+ + E+S +I+ ++ + Q GR R G + ++VD+
Sbjct: 350 CVLAAAQSIFSEGISLNELSCLIMGSLINNESLIEQLAGRVQRIVEGKLDPIVVDL 405
>pir||F75608 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460521|gb|AAF12227.1|AE001862_53 (AE001862)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 895
Score = 88.5 bits (216), Expect = 1e-16
Identities = 105/384 (27%), Positives = 166/384 (42%), Gaps = 84/384 (21%)
Query: 112 GVLALPVGSGKTVVGLRIIHE----IGRSALIIVHTKELLYQ------------------ 149
G+L LP G GKT R + E G + + HT LL Q
Sbjct: 75 GILVLPTGGGKTFTATRFLTEGPLSRGHKVIWLAHTHHLLDQAFGGFGPDAAGRYEIGHV 134
Query: 150 WADKVKEILGIEPGIIGDNKWSE----GDITVAMIQTLLS----------RG-TDKLQNK 194
++ + L G +G K +E D+ + +QTL RG D+ +
Sbjct: 135 GGEQQRLTLRTVSGTLGHGKVAEIKRTDDVLIITLQTLARALNARVHAGLRGFLDEARQT 194
Query: 195 YAIVMFDECHRTSAA--EKFYEVGI--SLPQVYRFGLSATPW---RRLRGEEMKIEGVVG 247
V+FDECH A + E G+ ++P+++ GL+ATP R +G K+
Sbjct: 195 GLTVVFDECHHAPAPTFRRLIE-GLRGAVPELHLLGLTATPTYTDERRQGLLKKL--FPQ 251
Query: 248 PIIYEVKAEDLINEGFLAKP-----------KFEVIEYNSKMPALADKYKELYEEAIME- 295
I+Y+V ++L+ G LA+P F EY + Y++L E+ I
Sbjct: 252 GILYQVSPQELMLAGILARPIVEEPATHISPDFTEQEYRDWQGS----YRDLPEKVIAHL 307
Query: 296 --NEERNKAIVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFL--------- 344
N RN I + + + + +I R LV++L++RGV A+ +
Sbjct: 308 ASNRARNALIADTYAQNRERYGQTIIFADRWYQCTALVELLRQRGVRADAIFTHRDADPG 367
Query: 345 -----SSQSPNRWE-ILEKFKNGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQ 397
+++S + E +L +FK GE+ VLV+ +L EG D+P + L S ++ Q
Sbjct: 368 TVDVRNARSADENETVLAQFKRGELDVLVNIRMLTEGTDVPGAQTVFLTRQTTSRILLTQ 427
Query: 398 TIGRALR-PKAGG--EAVIVDVKD 418
+GRALR PK GG EA +V D
Sbjct: 428 MVGRALRGPKFGGTEEAYVVSFID 451
>pir||T40328 DEAD box family helicase - fission yeast (Schizosaccharomyces
pombe) >gi|2995347|emb|CAA18301.1| (AL022244) DEAD box
family helicase [Schizosaccharomyces pombe]
Length = 606
Score = 86.2 bits (210), Expect = 7e-16
Identities = 90/353 (25%), Positives = 161/353 (45%), Gaps = 31/353 (8%)
Query: 94 KLRKYQKKAVKLAIK-----EKMGVLALPVGSGKTVVGLRIIHEI------GRSALIIVH 142
KLR YQ++ + + ++ ++L GSGKT + I LI+VH
Sbjct: 26 KLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVH 85
Query: 143 TKELLYQWADKVKEIL---GIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQN-KYAIV 198
KEL Q +E L IE + D+TVA + +L + K + ++
Sbjct: 86 RKELALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLLKYNPLNFKLL 145
Query: 199 MFDECHRTSAAE-----KFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEV 253
+FDE H ++ + + +V GL+AT +R + + + I+Y
Sbjct: 146 IFDEVHHMASPSYLRILEHFGAESEKSKVNVIGLTATLFR---ADGKGLACGLDEIVYHR 202
Query: 254 KAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAIVEKA---IEL 310
D+I + +L +PK I++++ + LAD L +E + + + KAI E +E
Sbjct: 203 HFVDMIKDNWLVEPKVINIKWSTDL-VLADSSSFLDQEKLKKEAQSEKAIFEIPRAWLEH 261
Query: 311 ANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPN--RWEILEKFKNGEIPVLVS 368
A+ L+ ++H + ++ G++A L ++ + R +++ F+ + PVLV+
Sbjct: 262 ASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVN 321
Query: 369 TL-LKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAG-GEAVIVDVKDS 419
+ L EG DIP I +++A S + Q IGR LR G + +I+D DS
Sbjct: 322 CMVLTEGTDIPNIDCLMIARPTSSPNLLTQMIGRGLRLHEGKRDCLILDFCDS 374
>emb|CAB63670.1| (AJ251789) hypothetical protein [Lactobacillus casei bacteriophage
A2]
Length = 455
Score = 79.6 bits (193), Expect = 7e-14
Identities = 93/349 (26%), Positives = 156/349 (44%), Gaps = 57/349 (16%)
Query: 93 YKLRKYQKKAV-----KLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSA-------LII 140
++L YQK+ V KLA K +L P GSGK+V II EI R A + +
Sbjct: 2 FQLHPYQKELVNQAREKLAAGNKSVLLVSPAGSGKSV----IIAEIARLAVERSGHVMFM 57
Query: 141 VHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITVAMIQTL--LSRGTDKLQNKYAIV 198
VH +EL+ Q I+ + E D+ I T+ ++ ++L +++
Sbjct: 58 VHRQELVNQ--------------IVQTFQADEIDLQATTIMTVGKIANRLNRLPRP-SLI 102
Query: 199 MFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDL 258
+ DE H S A+ + ++ V R G SA+PWR + G+ + V ++ + L
Sbjct: 103 ITDESHH-SLAKTYRKIYSFYADVPRLGFSASPWR-MNGQGLG--NVYESMVEGPSVKWL 158
Query: 259 INEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAIVEKAI---------E 309
I+ +LA Y+ P L D K + A V KAI
Sbjct: 159 IDHQYLAP-------YDYYAPTLIDVQKLQTSSTGDYTNKSMDAAVPKAIFGDVVSHYQH 211
Query: 310 LANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPN--RWEILEKFKNGEIPVLV 367
LA G + ++ I+ + +V+ + G+ A +++P R I+ FK G+I +L
Sbjct: 212 LAG-GRQAIVYAHSIEASKQVVEAFQSAGITAVHADAKTPKGQRDRIMADFKAGKITILS 270
Query: 368 ST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVIVD 415
+ L+ EG ++P++ II+ S V+ IQ R +R K G ++I+D
Sbjct: 271 NVDLISEGFNVPDVGVIIMLRPTASLVLDIQQSMRGMRYKPGKRSIIID 319
>sp|P24125|V51K_BPL79 51.5 KD PROTEIN >gi|76364|pir||JU0445 51K protein GP51C -
Lactococcus phage mi7-9 >gi|215499|gb|AAA32363.1|
(M36388) conserved bacteriophage encoded protein
[Lactococcus 1 bacteriophage]
Length = 452
Score = 76.5 bits (185), Expect = 6e-13
Identities = 84/315 (26%), Positives = 145/315 (45%), Gaps = 43/315 (13%)
Query: 117 PVGSGKTVVGLRIIH---EIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEG 173
P GSGK+VV I E G L +VH KEL+ Q + K + G+ +
Sbjct: 5 PPGSGKSVVISEITKLATEKGGRVLFLVHRKELIDQITNSFK-VHGVPLNQVEL------ 57
Query: 174 DITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAA--EKFYEVGISLPQVYRFGLSATP 231
+TV + LS + K +++ DE H AA +K YE +P R G +ATP
Sbjct: 58 -LTVGKAKNRLS-----VLRKPTLIITDEGHHGKAATYQKIYEFYADVP---RLGFTATP 108
Query: 232 WRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEE 291
WR + G+ K Y+ E E + + +Y S +P++ D K +
Sbjct: 109 WR-MSGDGFKDT-------YDYMIEGKTVEWLINNKRLAPYQYYS-LPSI-DISKLRIKN 158
Query: 292 AIMENEERNKA--------IVEKAIELANQGHRVLIDVKRIDHGEILVKMLKERGVNAEF 343
N+ + A +V++ ++ AN G + ++ ++ + K +E G+ A
Sbjct: 159 GDYSNQSIDDALGKTIFGDVVQEYVKHAN-GQKAILYAHSVEASQSFAKEFQEAGIKAVH 217
Query: 344 LSSQSPN--RWEILEKFKNGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIG 400
+ +++P R +++ F+NG I VL + L+ EG D+P+ + IL KS V+ +Q
Sbjct: 218 VDAKTPKNERDKLMLDFRNGRIKVLCNVDLISEGFDVPDCTVTILCRPTKSLVLFLQQSM 277
Query: 401 RALRPKAGGEAVIVD 415
R++R + A+I+D
Sbjct: 278 RSMRYQHRKTAIIID 292
>gb|AAG19725.1| (AE005058) putative DNA helicase; Rhl [Halobacterium sp. NRC-1]
Length = 324
Score = 75.7 bits (183), Expect = 1e-12
Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 34/294 (11%)
Query: 130 IHEIGRSALIIVHTKELLYQWADKVKEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTD 189
+ +G L++V ++EL QW +++ + IG+ E + I T + G D
Sbjct: 4 LESVGGETLVLVPSRELATQWREELLANTSLTGDQIGEYHGGEKRVRPVTIATYQTAGMD 63
Query: 190 KLQN-----KYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEG 244
+ ++ ++ ++++DE H A + SL +R GL+ATP R +E I
Sbjct: 64 RHRHVFDDREWGLIVYDEVHHIPA--EVARRSASLQSKHRLGLTATPVRE-DDKEADIYT 120
Query: 245 VVG-PIIYEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAI 303
+VG PI + A L + GF+A+P+ E+ +P D + YE A R +
Sbjct: 121 LVGRPIGTDWDA--LFDAGFVAEPEVEI----RYVPWRDD--DDRYEYAAASGHTRRRLA 172
Query: 304 VEKAIELANQGHRV--------LIDVKRIDHGEILVKMLKERGVNAEFLSSQSPN--RWE 353
E + A H V L+ V + GE + + L +A F++ ++P+ R
Sbjct: 173 AENPAKEAEIEHLVDQHGDTQALVFVDYLSQGERIAERL-----DAPFVNGETPHSRRET 227
Query: 354 ILEKFKNGEIPVL-VSTLLKEGVDIPEIS-AIILAGGGKSDVMTIQTIGRALRP 405
++F+ G + L VS + EG+D+P+ A++ +G G S Q GR +RP
Sbjct: 228 HFDQFRTGALDALVVSRIGDEGIDLPDAEFAVVASGLGGSRRQGAQRAGRTMRP 281
>pir||F71330 probable DNA repair helicase - syphilis spirochete
>gi|3322660|gb|AAC65366.1| (AE001217) DNA repair
helicase, putative [Treponema pallidum]
Length = 606
Score = 71.4 bits (172), Expect = 2e-11
Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 34/335 (10%)
Query: 96 RKYQKKAVKLAIKEK-----MGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQW 150
R YQ +A + + GV+ LP G+GKTVVGL ++ + LI+ QW
Sbjct: 238 RDYQWEAADAFVGNRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSAAAQQW 297
Query: 151 ADKVKE---ILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDK---------LQNKYAIV 198
++ E + G GI +T+A Q L R ++ + ++
Sbjct: 298 KRELCEKTDLDGTSIGIYSGECKEIRPVTIATYQILTWRAHADAPFSHFRLFMERSWGLI 357
Query: 199 MFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDL 258
++DE H A + + L V R GL+AT R G + +VGP Y+V +DL
Sbjct: 358 IYDEVHLLPA--PLFRITAELQVVRRLGLTATLVRE-DGCAQDVFSLVGPKRYDVPWKDL 414
Query: 259 INEGFLAKPKFEVIEYNSKMP-ALADKYK----ELYEEAIMENEERNKAIVEKAIELANQ 313
G++A+ + +E M +L +Y L ENE + A+V++ + A+
Sbjct: 415 EARGWIARVR--CVEVRVTMDRSLQYQYMTAPVRLRHRLASENEAK-VAVVQRLLR-AHA 470
Query: 314 GHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEILEKFKNGEIPVL-VSTLLK 372
G LI + + L +L+ V+ R I ++F+ G + VL VS +
Sbjct: 471 GAPTLIIGQYVQQLLHLAHVLQVPLVSGR---QTYAAREAIYQRFREGTLQVLVVSKVAN 527
Query: 373 EGVDIPEIS-AIILAGGGKSDVMTIQTIGRALRPK 406
+D+P+ S AI ++G S Q +GR LRPK
Sbjct: 528 CALDLPDASVAIQVSGTFGSRQEEAQRLGRLLRPK 562
>emb|CAA73931.1| (Y13611) uvsW [Bacteriophage RB30]
Length = 358
Score = 69.5 bits (167), Expect = 7e-11
Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 52/349 (14%)
Query: 19 DPKVYFQIYNLLSFRKD---------FGRWDKAESLYDPYTNTFPVGLLPRVKKFLNSKG 69
+ + ++ + SF D +G WD L D Y P GL+ ++KKF ++ G
Sbjct: 19 EESTFHELRDFFSFEADGYRFNPKYKYGHWDGRIRLLD-YNRLLPFGLVGQIKKFCDNFG 77
Query: 70 YRVKVKDERVIDGVKIN----STW---------NENYKLRKYQKKAVKLAIKEKMGVLAL 116
Y+ + D ++ + +++ W N+ + YQK AV + + +L L
Sbjct: 78 YKAWI-DPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 136
Query: 117 PVGSGKTVVGLRI----IHEIGRSALIIVHTKELLYQWADKVKE--------ILGIEPGI 164
P +GK+++ + + LIIV T L Q AD + I I G
Sbjct: 137 PTSAGKSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 196
Query: 165 IGDNKW-SEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYEVGISLPQVY 223
D+K+ ++ + V QT++ + + +++ ++M DECH + + ++
Sbjct: 197 SKDDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATGKSISSIISGLNNCMF 255
Query: 224 RFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAKPKFEVI------EYNSK 277
+FGLS + R + M+ G+ G I V L+ +G + + K I E+ +K
Sbjct: 256 KFGLSGS-LRDGKANIMQYVGLFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTK 314
Query: 278 MPALADKYKELYEE--AIMENEERNKAIVEKAIELANQGHRVLIDVKRI 324
+ K K EE I +RNK I + AI+LA + + K +
Sbjct: 315 L-----KGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHV 358
>pir||T37821 probable dna repair helicase - fission yeast (Schizosaccharomyces
pombe) >gi|2370478|emb|CAB11506.1| (Z98849) putative dna
repair helicase [Schizosaccharomyces pombe]
Length = 804
Score = 69.1 bits (166), Expect = 1e-10
Identities = 87/348 (25%), Positives = 152/348 (43%), Gaps = 49/348 (14%)
Query: 94 KLRKYQKKAVKLAI---KEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQW 150
++R YQ+K++ + + G++ LP G+GKT+VG+ I +S +++ + + QW
Sbjct: 323 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSVMQW 382
Query: 151 ADKVKEILGIEPGII----GDNK---WSEGDI---TVAMIQTLLSRGTDKLQ-------N 193
+ + I+P I D+K SE + T +M+ +R D +
Sbjct: 383 RQQFLQWSNIKPDHIAVFTADHKERFHSEAGVVVSTYSMVANTRNRSYDSQKMMDFLTGR 442
Query: 194 KYAIVMFDECHRTSAAEKFYEVGISLPQVYRFGLSATPWRRLRGEEMKIEG---VVGPII 250
++ ++ DE H AA F V ++ + GL+AT L E+ KI+ ++GP +
Sbjct: 443 EWGFILLDEVHVVPAA-MFRRVVTTIAAHTKLGLTAT----LVREDDKIDDLNFLIGPKM 497
Query: 251 YEVKAEDLINEGFLAKPKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAIVEKAIEL 310
YE DL +G +A K + E M E Y E + EN R + ++
Sbjct: 498 YEANWMDLAQKGHIA--KVQCAEVWCAMTT------EFYNEYLREN-SRKRMLLYIMNPK 548
Query: 311 ANQGHRVLIDVKRIDHGEILVKMLKERGVNA-------EFLSSQSP--NRWEILEKFKNG 361
Q + LID +I+V + A F+ +P R ILE F+
Sbjct: 549 KFQACQFLIDYHEKRGDKIIVFSDNVYALRAYAIKLGKYFIYGGTPQQERMRILENFQYN 608
Query: 362 EI--PVLVSTLLKEGVDIPEISAII-LAGGGKSDVMTIQTIGRALRPK 406
E+ + +S + +D+PE + +I ++ S Q +GR LR K
Sbjct: 609 ELVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 656
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166199264
Number of Sequences: 2977
Number of extensions: 7318050
Number of successful extensions: 26049
Number of sequences better than 1.0e-10: 29
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 25973
Number of HSP's gapped (non-prelim): 35
length of query: 446
length of database: 189,106,746
effective HSP length: 57
effective length of query: 389
effective length of database: 154,992,987
effective search space: 60292271943
effective search space used: 60292271943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)