BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0130 (PAB0130) DE:Hypothetical protein
(396 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75209 hypothetical protein PAB0130 - Pyrococcus abyssi (st... 785 0.0
pir||B71244 hypothetical protein PH0212 - Pyrococcus horikoshii ... 733 0.0
sp|Q58184|Y774_METJA HYPOTHETICAL PROTEIN MJ0774 >gi|2128494|pir... 69 6e-11
>pir||C75209 hypothetical protein PAB0130 - Pyrococcus abyssi (strain Orsay)
>gi|5457631|emb|CAB49122.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 396
Score = 785 bits (2004), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MESTRRIYASPSYEVYGLSKNPFIELASEGIEDIESIHVYQEVDMKISSLVSDVIGNRSS 60
MESTRRIYASPSYEVYGLSKNPFIELASEGIEDIESIHVYQEVDMKISSLVSDVIGNRSS
Sbjct: 1 MESTRRIYASPSYEVYGLSKNPFIELASEGIEDIESIHVYQEVDMKISSLVSDVIGNRSS 60
Query: 61 LTLSIVGPLGMGKTQRLKSIARVIEEKGGKVIYLKVDTTDILKITRDIFSSLKPPKSRTN 120
LTLSIVGPLGMGKTQRLKSIARVIEEKGGKVIYLKVDTTDILKITRDIFSSLKPPKSRTN
Sbjct: 61 LTLSIVGPLGMGKTQRLKSIARVIEEKGGKVIYLKVDTTDILKITRDIFSSLKPPKSRTN 120
Query: 121 IFIENLSRKLGFITRLEKMLSSVDEYKSRDIAEMLTQELSKYPYSALLLDELENMSGASE 180
IFIENLSRKLGFITRLEKMLSSVDEYKSRDIAEMLTQELSKYPYSALLLDELENMSGASE
Sbjct: 121 IFIENLSRKLGFITRLEKMLSSVDEYKSRDIAEMLTQELSKYPYSALLLDELENMSGASE 180
Query: 181 REKILFFEMLRHFISNLPPGCIFAFACIPEAYEEYSKQFPAFFMRLHYEFKLRPMSYQEV 240
REKILFFEMLRHFISNLPPGCIFAFACIPEAYEEYSKQFPAFFMRLHYEFKLRPMSYQEV
Sbjct: 181 REKILFFEMLRHFISNLPPGCIFAFACIPEAYEEYSKQFPAFFMRLHYEFKLRPMSYQEV 240
Query: 241 IELVKKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVLTEAVKHKFDP 300
IELVKKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVLTEAVKHKFDP
Sbjct: 241 IELVKKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVLTEAVKHKFDP 300
Query: 301 INEYVVTTILEEPKTLDEYLARIPSEFKDLVKVIVEEFQGGPVSYIEVAKELKIPGTEAY 360
INEYVVTTILEEPKTLDEYLARIPSEFKDLVKVIVEEFQGGPVSYIEVAKELKIPGTEAY
Sbjct: 301 INEYVVTTILEEPKTLDEYLARIPSEFKDLVKVIVEEFQGGPVSYIEVAKELKIPGTEAY 360
Query: 361 DKLEHLVSLGFLVGDPRGNYKVPDYVRKFLEKREEE 396
DKLEHLVSLGFLVGDPRGNYKVPDYVRKFLEKREEE
Sbjct: 361 DKLEHLVSLGFLVGDPRGNYKVPDYVRKFLEKREEE 396
>pir||B71244 hypothetical protein PH0212 - Pyrococcus horikoshii
>gi|3256598|dbj|BAA29281.1| (AP000001) 395aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 395
Score = 733 bits (1871), Expect = 0.0
Identities = 357/395 (90%), Positives = 388/395 (97%)
Query: 1 MESTRRIYASPSYEVYGLSKNPFIELASEGIEDIESIHVYQEVDMKISSLVSDVIGNRSS 60
MESTRRIYASPSYEVYGLS+NPFIELASEGIEDIESIHVYQEVDM+ISSL+SDVIGNRSS
Sbjct: 1 MESTRRIYASPSYEVYGLSRNPFIELASEGIEDIESIHVYQEVDMRISSLISDVIGNRSS 60
Query: 61 LTLSIVGPLGMGKTQRLKSIARVIEEKGGKVIYLKVDTTDILKITRDIFSSLKPPKSRTN 120
+TLSIVGPLGMGKTQRLKSIARVIE++GGKVIY+KVDTTD+LKITRDIF+SL+PPK+RTN
Sbjct: 61 ITLSIVGPLGMGKTQRLKSIARVIEDRGGKVIYIKVDTTDVLKITRDIFASLRPPKNRTN 120
Query: 121 IFIENLSRKLGFITRLEKMLSSVDEYKSRDIAEMLTQELSKYPYSALLLDELENMSGASE 180
+F+ENLSRKLGFITRLEKMLSS DEYKSRDIAEMLT+ELSKY YSALLLDELENM GA+E
Sbjct: 121 VFLENLSRKLGFITRLEKMLSSTDEYKSRDIAEMLTRELSKYQYSALLLDELENMRGATE 180
Query: 181 REKILFFEMLRHFISNLPPGCIFAFACIPEAYEEYSKQFPAFFMRLHYEFKLRPMSYQEV 240
+EKILFFEMLRHFISN+PPGC+FAFA IPEAYEEYS QFPAFFMRLHYEFKLRPMSYQE+
Sbjct: 181 KEKILFFEMLRHFISNMPPGCVFAFASIPEAYEEYSSQFPAFFMRLHYEFKLRPMSYQEI 240
Query: 241 IELVKKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVLTEAVKHKFDP 300
IELVKKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVL+EAVKHKFDP
Sbjct: 241 IELVKKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVLSEAVKHKFDP 300
Query: 301 INEYVVTTILEEPKTLDEYLARIPSEFKDLVKVIVEEFQGGPVSYIEVAKELKIPGTEAY 360
INEYVVTTILEEPK+L+EY+ARIPS+FKDLVKVIVE+F+GGPVSYI++AKELKIPG EAY
Sbjct: 301 INEYVVTTILEEPKSLEEYIARIPSDFKDLVKVIVEKFEGGPVSYIQIAKELKIPGMEAY 360
Query: 361 DKLEHLVSLGFLVGDPRGNYKVPDYVRKFLEKREE 395
+KLEHLVSLGFLVGDPRGNYKVPDYVRKFLE++ E
Sbjct: 361 EKLEHLVSLGFLVGDPRGNYKVPDYVRKFLEEKGE 395
>sp|Q58184|Y774_METJA HYPOTHETICAL PROTEIN MJ0774 >gi|2128494|pir||F64396 hypothetical
protein MJ0774 - Methanococcus jannaschii
>gi|1499594|gb|AAB98778.1| (U67522) M. jannaschii
predicted coding region MJ0774 [Methanococcus
jannaschii]
Length = 409
Score = 69.5 bits (167), Expect = 6e-11
Identities = 87/397 (21%), Positives = 165/397 (40%), Gaps = 31/397 (7%)
Query: 18 LSKNPFIELASEGIED--IESIHVYQEVDMKISSLVSDVIGNRSSLTLSIVGPLGMGKTQ 75
L NPF E G + + +E+ + S + + N + IVG G+GK+
Sbjct: 23 LKYNPFSEKPIRGNTKFFVGRVSELREIGEILGSALHGSVANAA-----IVGTKGIGKSS 77
Query: 76 RLKSIARVIEEKGGKVIYLKVDTTD----ILKITRDIFSSLKPPKSRT--NIFIENLSRK 129
L I +++G V+ + ++++ +I + S T + ++E+ SR
Sbjct: 78 MLNIIYYATKKQGHWVVEMTASQVTPRQFLIQLLYNILTENIITMSGTIKSDYMEHSSRI 137
Query: 130 LGFITRLEKMLSSVD-----EYKSRDIAEMLTQELSKYPYSALLLDELENMSGASEREKI 184
L +L V E RD+ ++ + S +L+DE + + S +
Sbjct: 138 LDMYRKLNNYGDKVPIHYPRERIERDLEYLINEVKSPDKLCIILIDEADQFAKKSCLSLL 197
Query: 185 LFFEMLRHFISNLPPGCIFAFACIPEAYEEYSKQFPAFFMRLHYEFKLRPMSYQEVIELV 244
FF + G + A P ++ +K P R+ + P+S E +L+
Sbjct: 198 QFFHSFLY-----EEGILTFMAGSPTLMDDLTKISPPIKDRIPKIINMPPLSKDESYDLI 252
Query: 245 KKRLAKVRIRDTADPLYPFTEDAIKLIHELGKGNPRQILRLLNYVLTEAVKHKFDPINEY 304
++RL I D A+ PFTE+AI I E G PR+I+ + ++ A++ I+E
Sbjct: 253 RRRLEDAHI-DGAEEFEPFTEEAIHKIVEECDGIPRKIIMTCSESISIAIRKGLTKIDEK 311
Query: 305 VVTTILEE--PKTLDEYLARIPSEFKDLVKVIVEEFQGGPVSYIEVAKELKIPGTEAYDK 362
VV + + L + ++V+ + E GG + ++A+ LK +
Sbjct: 312 VVKEAMHSLGISVGHQILNHLTPAQSEIVRAMAE--LGGSATVTQLAEYLKKSPSTIGTH 369
Query: 363 LEHLVSLGFLVGDPRGN---YKVPDYVRKFLEKREEE 396
L + +G++ + GN YK+ +R L ++E
Sbjct: 370 LSDIYEMGYIYKEREGNNVYYKLSKELRDVLIGEDDE 406
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143171814
Number of Sequences: 2977
Number of extensions: 6042173
Number of successful extensions: 20512
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20508
Number of HSP's gapped (non-prelim): 3
length of query: 396
length of database: 189,106,746
effective HSP length: 58
effective length of query: 338
effective length of database: 154,394,500
effective search space: 52185341000
effective search space used: 52185341000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)