BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0131 (PAB0131) DE:Hypothetical protein
         (170 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75209 hypothetical protein PAB0131 - Pyrococcus abyssi (st...   342  2e-93
pir||C71244 hypothetical protein PH0213 - Pyrococcus horikoshii ...   254  4e-67

>pir||D75209 hypothetical protein PAB0131 - Pyrococcus abyssi (strain Orsay)
           >gi|5457632|emb|CAB49123.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 170
           
 Score =  342 bits (868), Expect = 2e-93
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MNYEEHVLLGLATYPLFVAFAFFLSRYLPLKLSFLALSLGYAFYVLGSDLPDIDHPDSLI 60
           MNYEEHVLLGLATYPLFVAFAFFLSRYLPLKLSFLALSLGYAFYVLGSDLPDIDHPDSLI
Sbjct: 1   MNYEEHVLLGLATYPLFVAFAFFLSRYLPLKLSFLALSLGYAFYVLGSDLPDIDHPDSLI 60

Query: 61  HRGSKPLFSVAVGSVTALKVYPYLPYYPIVLSWVIGGVASILGWFAFTAMMPRHRGIVHS 120
           HRGSKPLFSVAVGSVTALKVYPYLPYYPIVLSWVIGGVASILGWFAFTAMMPRHRGIVHS
Sbjct: 61  HRGSKPLFSVAVGSVTALKVYPYLPYYPIVLSWVIGGVASILGWFAFTAMMPRHRGIVHS 120

Query: 121 LLFAGIYGVLAFLLMRYGLSLSMEESLLVGLASFSGYTLHLIADRSVKLL 170
           LLFAGIYGVLAFLLMRYGLSLSMEESLLVGLASFSGYTLHLIADRSVKLL
Sbjct: 121 LLFAGIYGVLAFLLMRYGLSLSMEESLLVGLASFSGYTLHLIADRSVKLL 170


>pir||C71244 hypothetical protein PH0213 - Pyrococcus horikoshii
           >gi|3256599|dbj|BAA29282.1| (AP000001) 171aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 171
           
 Score =  254 bits (643), Expect = 4e-67
 Identities = 120/171 (70%), Positives = 143/171 (83%), Gaps = 1/171 (0%)

Query: 1   MNYEEHVLLGLATYPLFVAFAFFLSRYLPLKLSFLALSLGYAFYVLGSDLPDIDHPDSLI 60
           MNYEEHVLLGL TYPLFV  A+ LS YLPLKL+F +L LGYAFYVLGSDLPDIDHPDSLI
Sbjct: 1   MNYEEHVLLGLGTYPLFVLLAYILSNYLPLKLTFPSLILGYAFYVLGSDLPDIDHPDSLI 60

Query: 61  HRGSKPLFSVAVGSVTALKVYPYLPY-YPIVLSWVIGGVASILGWFAFTAMMPRHRGIVH 119
           HRG KP+FSV +GS+ A+KVYPYL   Y +V+SW++GG  +++GWF F+AMMPRHRGI+H
Sbjct: 61  HRGIKPIFSVILGSIVAVKVYPYLNVKYALVVSWIVGGAFALIGWFLFSAMMPRHRGIIH 120

Query: 120 SLLFAGIYGVLAFLLMRYGLSLSMEESLLVGLASFSGYTLHLIADRSVKLL 170
           S+LFA IYG++ F  ++YG SLS  E+ LVG ASF GY LHLIAD+SVKLL
Sbjct: 121 SVLFAVIYGIVVFFAVKYGTSLSNGEAYLVGFASFMGYLLHLIADKSVKLL 171


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.146    0.444 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61638565
Number of Sequences: 2977
Number of extensions: 2445769
Number of successful extensions: 7965
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7962
Number of HSP's gapped (non-prelim): 2
length of query: 170
length of database: 189,106,746
effective HSP length: 49
effective length of query: 121
effective length of database: 159,780,883
effective search space: 19333486843
effective search space used: 19333486843
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 162 (67.5 bits)