BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0132 203160 203777 206 !not a gene!
         (206 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71244 hypothetical protein PH0215 - Pyrococcus horikoshii ...   154  8e-37

>pir||E71244 hypothetical protein PH0215 - Pyrococcus horikoshii
           >gi|3256601|dbj|BAA29284.1| (AP000001) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score =  154 bits (385), Expect = 8e-37
 Identities = 81/114 (71%), Positives = 95/114 (83%)

Query: 19  IAIINSPIILMVTLSAVLFIPLIRYRESNIKTAVITIAMKVAVTDTTIPYSAVNVIAAVI 78
           +A++N+PIIL+VTLSAVL IPLI+YR   I  AVI +A+ V   +T IP SAV+VIAAVI
Sbjct: 1   MAMMNNPIILIVTLSAVLLIPLIKYRAIIISAAVIAMAISVPTIETIIPCSAVSVIAAVI 60

Query: 79  AAGPAINGVATGTAAKARMFFSFFIVTIPPLSRASRPILKRTNPPATLKASSSM 132
           AAGPAINGVATGTAA+A +FFS FIVTIPP SRAS PIL  TNPPATL+AS+SM
Sbjct: 61  AAGPAINGVATGTAARASIFFSLFIVTIPPPSRASNPILNNTNPPATLRASNSM 114


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.134    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63442027
Number of Sequences: 2977
Number of extensions: 2052517
Number of successful extensions: 8434
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8433
Number of HSP's gapped (non-prelim): 1
length of query: 206
length of database: 189,106,746
effective HSP length: 56
effective length of query: 150
effective length of database: 155,591,474
effective search space: 23338721100
effective search space used: 23338721100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)