BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0133 (PAB0133) DE:Hypothetical protein
(296 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75209 hypothetical protein PAB0133 - Pyrococcus abyssi (st... 588 e-167
pir||F71244 hypothetical protein PH0216 - Pyrococcus horikoshii ... 382 e-105
gi|11498059 A. fulgidus predicted coding region AF0447 [Archaeog... 103 2e-21
gi|11498058 conserved hypothetical protein [Archaeoglobus fulgid... 79 5e-14
>pir||F75209 hypothetical protein PAB0133 - Pyrococcus abyssi (strain Orsay)
>gi|5457634|emb|CAB49125.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 296
Score = 588 bits (1500), Expect = e-167
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MGKVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAV 60
MGKVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAV
Sbjct: 1 MGKVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAV 60
Query: 61 QSLNLSLAGVEIGRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANI 120
QSLNLSLAGVEIGRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANI
Sbjct: 61 QSLNLSLAGVEIGRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANI 120
Query: 121 KVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKE 180
KVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKE
Sbjct: 121 KVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKE 180
Query: 181 IELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQPNSRGTVDVALTFDV 240
IELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQPNSRGTVDVALTFDV
Sbjct: 181 IELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQPNSRGTVDVALTFDV 240
Query: 241 EKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNILSGIKFA 296
EKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNILSGIKFA
Sbjct: 241 EKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNILSGIKFA 296
>pir||F71244 hypothetical protein PH0216 - Pyrococcus horikoshii
>gi|3256602|dbj|BAA29285.1| (AP000001) 296aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 296
Score = 382 bits (970), Expect = e-105
Identities = 170/295 (57%), Positives = 232/295 (78%)
Query: 1 MGKVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAV 60
MGKVGAII IIFLSW++YSAYF++NF P + GEWG ++G+N+E++ +VDL NPSP P+ +
Sbjct: 1 MGKVGAIITIIFLSWIVYSAYFILNFHPEISGEWGAVKGDNIELLLNVDLSNPSPAPILL 60
Query: 61 QSLNLSLAGVEIGRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANI 120
+++ + LAGV+IG ++A I IF R + +++NLD + AL+NHIK+KE S + A +
Sbjct: 61 ETIKVKLAGVKIGETKRANIAIFSRKVTIDSIINLDNLTTALINHIKEKEESTVSVYAKL 120
Query: 121 KVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKE 180
++ IP++YS+ + +T++LS+L+N+ EP++YS+G IP KTPGIEG+ A+WG+VS
Sbjct: 121 ELFDVIPVEYSRDVNFQTDLLSYLKNLRVEPKIYSIGGIPLKTPGIEGMDAKWGRVSNDS 180
Query: 181 IELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQPNSRGTVDVALTFDV 240
IE++G +KLYNPNSFPIPVT L AD+YMN++ IG+G LKGT+LQPNSRG V V L DV
Sbjct: 181 IEIIGWLKLYNPNSFPIPVTGLSADLYMNSVNIGKGVILKGTVLQPNSRGEVKVKLVLDV 240
Query: 241 EKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNILSGIKF 295
+ KEAFK HI NGERST++ DI LVV+VGG EYE+PIKDIETTFET+IL IKF
Sbjct: 241 DNFKEAFKTHITNGERSTIRADINLVVKVGGVEYEIPIKDIETTFETDILGSIKF 295
>gi|11498059 A. fulgidus predicted coding region AF0447 [Archaeoglobus fulgidus]
>gi|7448857|pir||G69305 hypothetical protein AF0447 -
Archaeoglobus fulgidus >gi|2650195|gb|AAB90802.1|
(AE001074) A. fulgidus predicted coding region AF0447
[Archaeoglobus fulgidus]
Length = 182
Score = 103 bits (255), Expect = 2e-21
Identities = 50/129 (38%), Positives = 83/129 (63%), Gaps = 2/129 (1%)
Query: 164 PGIEGIYARWGKVSTKEIELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTI 223
P ++ I ++WGKV+ E++ T+K+YNPN FP+P+ ++ ++Y+N IK+GEG L I
Sbjct: 31 PQLKEINSKWGKVTESTTEIITTVKVYNPNPFPLPLKDILTEVYINGIKMGEGSALSAHI 90
Query: 224 LQPNSRGTVDVALTFDVEKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIET 283
+PNS TV + D K+ + ++ HI NGE STV + +V ++ +++VP +I
Sbjct: 91 -EPNSESTVIITTYVDNSKIPQWWRSHITNGEESTVSIRGYMVFDLRFIDFKVPF-EITN 148
Query: 284 TFETNILSG 292
F+T+ILSG
Sbjct: 149 RFKTDILSG 157
>gi|11498058 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448856|pir||F69305 conserved hypothetical protein
AF0446 - Archaeoglobus fulgidus
>gi|2650192|gb|AAB90800.1| (AE001074) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 126
Score = 79.2 bits (192), Expect = 5e-14
Identities = 40/126 (31%), Positives = 71/126 (55%)
Query: 166 IEGIYARWGKVSTKEIELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQ 225
+E + A WG V+ + E+V K+ N + PI V+ + MN +K+ +G ++
Sbjct: 1 MESVKAMWGVVTDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVK 60
Query: 226 PNSRGTVDVALTFDVEKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTF 285
P S+ T+ +L + ++E + HI NGE++ ++V I+ +EVGG + EVP+ E+ F
Sbjct: 61 PKSKTTLKFSLRLNNSFIREWWVTHIANGEKTKIRVAIKPTIEVGGRDVEVPVFLRESEF 120
Query: 286 ETNILS 291
T +LS
Sbjct: 121 TTKLLS 126
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106213987
Number of Sequences: 2977
Number of extensions: 4468742
Number of successful extensions: 11499
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11487
Number of HSP's gapped (non-prelim): 6
length of query: 296
length of database: 189,106,746
effective HSP length: 57
effective length of query: 239
effective length of database: 154,992,987
effective search space: 37043323893
effective search space used: 37043323893
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)