BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0135 205342 205761 140 !not a gene!
         (140 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71244 hypothetical protein PH0218 - Pyrococcus horikoshii ...   289  1e-77
pir||D72581 hypothetical protein APES064 - Aeropyrum pernix (str...    69  3e-11
pir||E72581 hypothetical protein APES065 - Aeropyrum pernix (str...    68  7e-11

>pir||H71244 hypothetical protein PH0218 - Pyrococcus horikoshii
           >gi|3256604|dbj|BAA29287.1| (AP000001) 140aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 140
           
 Score =  289 bits (732), Expect = 1e-77
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MRAGARRWTLRHGSRPYGAQQARNLRNAGNRDGGTPSAVPLARLFRSVKSSGNKGWARPV 60
           MRAGARRWTLRHGSRPYGAQQARNLRNAGNRDGGTPSAVPLARLFRSVKSSGNKGWARPV
Sbjct: 1   MRAGARRWTLRHGSRPYGAQQARNLRNAGNRDGGTPSAVPLARLFRSVKSSGNKGWARPV 60

Query: 61  AAAAVIPAARVVATIIGPKAAVAGPVSPWRNPTAQPWGSLGILRALGPGEAGGTPGVGVK 120
           AAAAVIPAARVVATIIGPKAAVAGPVSPWRNPTAQPWGSLGILRALGPGEAGGTPGVGVK
Sbjct: 61  AAAAVIPAARVVATIIGPKAAVAGPVSPWRNPTAQPWGSLGILRALGPGEAGGTPGVGVK 120

Query: 121 SYNPGGTASGEGARLERVRR 140
           SYNPGGTASGEGARLERVRR
Sbjct: 121 SYNPGGTASGEGARLERVRR 140


>pir||D72581 hypothetical protein APES064 - Aeropyrum pernix (strain K1)
           >gi|5105624|dbj|BAA80937.1| (AP000062) 89aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 89
           
 Score = 68.7 bits (165), Expect = 3e-11
 Identities = 41/83 (49%), Positives = 44/83 (52%)

Query: 34  GTPSAVPLARLFRSVKSSGNKGWARPVAAAAVIPAARVVATIIGPKAAVAGPVSPWRNPT 93
           G P   PL  LF +V   GNK  AR V+AAAVIPA R V  + GPKA VAG  SP   P 
Sbjct: 7   GLPRVPPLGGLFPAVSRRGNKRGARLVSAAAVIPAPRAVGVLTGPKAPVAGSTSPRLKPR 66

Query: 94  AQPWGSLGILRALGPGEAGGTPG 116
           AQP    G  RA G       PG
Sbjct: 67  AQPGEWRGYCRARGRERPRVLPG 89


>pir||E72581 hypothetical protein APES065 - Aeropyrum pernix (strain K1)
          >gi|5105625|dbj|BAA80938.1| (AP000062) 92aa long
          hypothetical protein [Aeropyrum pernix]
          Length = 92
          
 Score = 67.5 bits (162), Expect = 7e-11
 Identities = 34/49 (69%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 1  MRAGARRWTLRHGSRPYGAQQARNLRNAGNRDGGTPSAVPLARLFRSVK 49
          +RAGA RW LR G RPYGA QAR LRNAGNRDG TPSA PL   F   K
Sbjct: 45 VRAGAPRWALRQGPRPYGAHQARKLRNAGNRDGATPSA-PLGGAFPRCK 92


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.134    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62106997
Number of Sequences: 2977
Number of extensions: 2827980
Number of successful extensions: 11431
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11429
Number of HSP's gapped (non-prelim): 3
length of query: 140
length of database: 189,106,746
effective HSP length: 51
effective length of query: 89
effective length of database: 158,583,909
effective search space: 14113967901
effective search space used: 14113967901
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)