BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0137 (PAB0137) DE:Hypothetical protein
(483 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75209 hypothetical protein PAB0137 - Pyrococcus abyssi (st... 1001 0.0
pir||G71245 hypothetical protein PH0222 - Pyrococcus horikoshii ... 820 0.0
pir||H72640 hypothetical protein APE0560 - Aeropyrum pernix (str... 310 3e-83
>pir||G75209 hypothetical protein PAB0137 - Pyrococcus abyssi (strain Orsay)
>gi|5457635|emb|CAB49126.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 483
Score = 1001 bits (2560), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MGILEKLQSFPPRYGPEWGSGGIFGLKYHRETLYFTLAFEGEAHFITSDSHQVYEFQLVG 60
MGILEKLQSFPPRYGPEWGSGGIFGLKYHRETLYFTLAFEGEAHFITSDSHQVYEFQLVG
Sbjct: 1 MGILEKLQSFPPRYGPEWGSGGIFGLKYHRETLYFTLAFEGEAHFITSDSHQVYEFQLVG 60
Query: 61 PRPTSGGDTYNAVETVDEFIYFGGWVHAPAKFRGKREGKATIDFSNKYSHVHEYDTSTGR 120
PRPTSGGDTYNAVETVDEFIYFGGWVHAPAKFRGKREGKATIDFSNKYSHVHEYDTSTGR
Sbjct: 61 PRPTSGGDTYNAVETVDEFIYFGGWVHAPAKFRGKREGKATIDFSNKYSHVHEYDTSTGR 120
Query: 121 IRLVWKESLHHPEKWVGEVSEIIYNPYTDELLLAREDGHENLGVYSLDRRRGGLRRLLSK 180
IRLVWKESLHHPEKWVGEVSEIIYNPYTDELLLAREDGHENLGVYSLDRRRGGLRRLLSK
Sbjct: 121 IRLVWKESLHHPEKWVGEVSEIIYNPYTDELLLAREDGHENLGVYSLDRRRGGLRRLLSK 180
Query: 181 PSPKGTQVHDVAFFGVGKNYTKGLEGIYALDMVTEKWDEFKLSGSIDGEGYVEPHLGAMA 240
PSPKGTQVHDVAFFGVGKNYTKGLEGIYALDMVTEKWDEFKLSGSIDGEGYVEPHLGAMA
Sbjct: 181 PSPKGTQVHDVAFFGVGKNYTKGLEGIYALDMVTEKWDEFKLSGSIDGEGYVEPHLGAMA 240
Query: 241 SVNNRAFAFVRGGVFVGNPYNGEEFRFVRLFDFPTFYAPFRVNALNFGGGIIIAFNSHHD 300
SVNNRAFAFVRGGVFVGNPYNGEEFRFVRLFDFPTFYAPFRVNALNFGGGIIIAFNSHHD
Sbjct: 241 SVNNRAFAFVRGGVFVGNPYNGEEFRFVRLFDFPTFYAPFRVNALNFGGGIIIAFNSHHD 300
Query: 301 AYYKPRTEEEKLYHRFTNTIVGPSVLVYIAPPLVKIVGTFGARVTSIENAGDKLLVATNT 360
AYYKPRTEEEKLYHRFTNTIVGPSVLVYIAPPLVKIVGTFGARVTSIENAGDKLLVATNT
Sbjct: 301 AYYKPRTEEEKLYHRFTNTIVGPSVLVYIAPPLVKIVGTFGARVTSIENAGDKLLVATNT 360
Query: 361 TPNTGALDATPFDTGYRNILVFDHEIININNSPPVRFSVPLIRNIFGGIPLDGYKEPRII 420
TPNTGALDATPFDTGYRNILVFDHEIININNSPPVRFSVPLIRNIFGGIPLDGYKEPRII
Sbjct: 361 TPNTGALDATPFDTGYRNILVFDHEIININNSPPVRFSVPLIRNIFGGIPLDGYKEPRII 420
Query: 421 LKLSQDAKLIVHEYDLALPLEESDADSFDVRRGRDVIDLSAFSGIVSFKLEGDANGKAII 480
LKLSQDAKLIVHEYDLALPLEESDADSFDVRRGRDVIDLSAFSGIVSFKLEGDANGKAII
Sbjct: 421 LKLSQDAKLIVHEYDLALPLEESDADSFDVRRGRDVIDLSAFSGIVSFKLEGDANGKAII 480
Query: 481 ELR 483
ELR
Sbjct: 481 ELR 483
>pir||G71245 hypothetical protein PH0222 - Pyrococcus horikoshii
>gi|3256611|dbj|BAA29294.1| (AP000001) 489aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 489
Score = 820 bits (2095), Expect = 0.0
Identities = 391/490 (79%), Positives = 433/490 (87%), Gaps = 8/490 (1%)
Query: 1 MGILEKLQSFPPRYGPEWGSGGIFGLKYHRETLYFTLAFEGEAHFITSDSHQVYEFQLVG 60
MGILEKL FPPRYGPEWGSGGIFGL+YH ETLYFTLAFEGEAHFIT+DSH VYEFQLVG
Sbjct: 1 MGILEKLHRFPPRYGPEWGSGGIFGLRYHNETLYFTLAFEGEAHFITNDSHDVYEFQLVG 60
Query: 61 PRPTSGGDTYNAVETVDEFIYFGGWVHAPAKFRGKREGKATIDFSNKYSHVHEYDTSTGR 120
PRPTSGGDTYNAVE VDEFIYFGGWVHAPAKFRGK G+ATIDFSNKYSHVHEYDT TGR
Sbjct: 61 PRPTSGGDTYNAVEVVDEFIYFGGWVHAPAKFRGKESGQATIDFSNKYSHVHEYDTLTGR 120
Query: 121 IRLVWKESLHHPEKWVGEVSEIIYNPYTDELLLAREDGHENLGVYSLDRRRGGLRRLLSK 180
+RLVWKES+HHPEKW GEVSEI+YNPYTDELLLAREDGHENLGVYSLDRRRGG+RRL K
Sbjct: 121 VRLVWKESIHHPEKWCGEVSEILYNPYTDELLLAREDGHENLGVYSLDRRRGGIRRLSDK 180
Query: 181 PSPKGTQVHDVAFFGVGKNYTKGLEGIYALDMVTEKWDEFKLSGSIDGEGYVEPHLGAMA 240
PSPKGTQVHDVAFFGVGKNYT+GL I+ALDMV+EKWD F L S+DGE Y+ PHLGAMA
Sbjct: 181 PSPKGTQVHDVAFFGVGKNYTQGLREIHALDMVSEKWDAFGLGESLDGERYLAPHLGAMA 240
Query: 241 SVNNRAFAFVRGGVFVGNPYNGEEFRFVRLFDFPTFYAPFRVNALNFGGGIIIAFNSHHD 300
S+NNRAFAFVRGG+FVGNPYNGEEF+FVRLFDF TFYAPFRVNAL FGGG++I FNSHHD
Sbjct: 241 SINNRAFAFVRGGIFVGNPYNGEEFKFVRLFDFYTFYAPFRVNALPFGGGVLIGFNSHHD 300
Query: 301 AYYKPRTEEEKLYHRFTNTIVGPSVLVYIAPPLVKIVGTFGARVTSIENAGDKLLVATNT 360
AYYKPR+EEE +YH+FTNTIVGPSVLVYI PP V+IVG FGAR+TS+E DK+LVAT+
Sbjct: 301 AYYKPRSEEEMIYHKFTNTIVGPSVLVYITPPSVRIVGVFGARITSLEQVKDKILVATSN 360
Query: 361 TPNTGALDATPFDTGYRNILVFDHEIININNSPPVRFSVPL------IRNIFGGIPLDGY 414
TPNTGALDATPFDTG R I+V + I + SPPVRFSVPL + FGGIPL+GY
Sbjct: 361 TPNTGALDATPFDTGQRGIVVLSQDEI-LRTSPPVRFSVPLGPVFEAGGDTFGGIPLEGY 419
Query: 415 KEPRIILKLSQDAKLIVHEYDLALPLEESDADSFDVRRGRDVIDLSAFSGIVSFKL-EGD 473
+EPR+ILK S++ KL V+EYDLALPLE +D D F++RRGR+VIDLS+FSGIVSFK+ E D
Sbjct: 420 REPRLILKASKENKLRVYEYDLALPLENADYDEFEIRRGRNVIDLSSFSGIVSFKVKEED 479
Query: 474 ANGKAIIELR 483
+GKAIIELR
Sbjct: 480 KSGKAIIELR 489
>pir||H72640 hypothetical protein APE0560 - Aeropyrum pernix (strain K1)
>gi|5104213|dbj|BAA79528.1| (AP000060) 483aa long
hypothetical protein [Aeropyrum pernix]
Length = 483
Score = 310 bits (785), Expect = 3e-83
Identities = 180/462 (38%), Positives = 257/462 (54%), Gaps = 23/462 (4%)
Query: 7 LQSFPPRYGPEWGSGGIFGLKYHRETLYFTLAFEGEAHFITSD-SHQVYEFQLVGPRPTS 65
L+ P GPEWG GGI+ L+ HR +L++TLAFE + + D S Y++ LVGP P S
Sbjct: 2 LERVKPGVGPEWGGGGIYSLRLHRGSLFYTLAFEARSTLLRGDCSWSSYDYSLVGPPPRS 61
Query: 66 GGDTYNAVETVDEFIYFGGWVHAPAKFRGKREGK-ATIDFSNKYSHVHEYDTSTGRIRLV 124
GGDTYNAVE VD IYFGGW HAPA K +G+ A + F+NKYS +HE D TG +RL+
Sbjct: 62 GGDTYNAVEAVDGKIYFGGWAHAPAVLERKGKGRLAEVVFTNKYSILHEMDVDTGEVRLL 121
Query: 125 WKESLHHPEKWVGEVSEIIYNPYTDELLLAREDGHENLGVYSLDRRRGGLRRLLSKPSPK 184
WKE W EVSE++YNP D LLLAR DGH N G++ RR GG+R+L S P K
Sbjct: 122 WKEGARDRRLWACEVSEVLYNPLRDTLLLARGDGHINCGIFEAGRR-GGVRKLSSTPVLK 180
Query: 185 GTQVHDVAFFGVGKNYTKGLEGIYALDMVTEKW----DEFKLSGSIDGEGYVEPHLGAMA 240
G D+A F + + G G+ +D+ + + + +DG G GA+
Sbjct: 181 GEVFMDMACFSIHHGWG-GNPGLECVDLESGETVYTGEAVPEEAGLDGGGLDHYREGAVF 239
Query: 241 SVNNRAFAFVRGGVFVGNPYNGEEFRFVRLFDF-PTFYAPFRVNALNFGGGIIIAFNSHH 299
++ R + +GG V +P G E RF R+ DF Y+P R NAL GGG++I FN+
Sbjct: 240 QLHTRVYVAHKGGFTVFDPEGGGEPRFYRVLDFGDNPYSPTRTNALYLGGGVLIPFNTPT 299
Query: 300 DAYYKPRTEEEKLYHRFTNTIVGPSVLVYIAPPLVKIVGTFGARVTSIENAGDKLLVATN 359
A + E R + P++LVY+ P ++IVG+ GARVTS+E GDK+L+A +
Sbjct: 300 AATVRGTDELPNNVQRSSRRSPAPTLLVYVTPTDMRIVGSLGARVTSMEALGDKVLLAWS 359
Query: 360 TTPNTGALDATPFDTGYRNILVFDHEIININNSPPVRFSVP---LIRNIFGGIPLDGYKE 416
T PN DAT D R + V + + PP+ V + FGG+PL GY+E
Sbjct: 360 TQPNFERYDATATDASVRGVAVVSQDSLLAGRPPPLSIRVDPGWVGDRRFGGLPLYGYRE 419
Query: 417 PRIILKLSQDAKLIVHEYDLALPLEESDADSFDVRRGRDVID 458
++ + ++++ Y++ +D V+ GR+V++
Sbjct: 420 LQVD---PRGGRVVLEAYEI--------SDEAPVKYGREVVE 450
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.142 0.429
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201977631
Number of Sequences: 2977
Number of extensions: 9232895
Number of successful extensions: 17250
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17237
Number of HSP's gapped (non-prelim): 3
length of query: 483
length of database: 189,106,746
effective HSP length: 53
effective length of query: 430
effective length of database: 157,386,935
effective search space: 67676382050
effective search space used: 67676382050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)