BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0138 (PAB0138) DE:Hypothetical protein
(190 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75209 hypothetical protein PAB0138 - Pyrococcus abyssi (st... 377 e-104
pir||H71245 hypothetical protein PH0223 - Pyrococcus horikoshii ... 314 4e-85
sp|Q58215|Y805_METJA HYPOTHETICAL PROTEIN MJ0805 >gi|2128517|pir... 123 1e-27
pir||B69031 conserved hypothetical protein MTH1229 - Methanobact... 113 1e-24
>pir||H75209 hypothetical protein PAB0138 - Pyrococcus abyssi (strain Orsay)
>gi|5457636|emb|CAB49127.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 190
Score = 377 bits (959), Expect = e-104
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MINLDLLIIKDRRIDYDGSAIRSHWAYRNFGILGDSLVVFRGRCDVKVEEMVDIEDLRLK 60
MINLDLLIIKDRRIDYDGSAIRSHWAYRNFGILGDSLVVFRGRCDVKVEEMVDIEDLRLK
Sbjct: 1 MINLDLLIIKDRRIDYDGSAIRSHWAYRNFGILGDSLVVFRGRCDVKVEEMVDIEDLRLK 60
Query: 61 KEIKGDDMIHYIAEIFWHPDVLLASSLQKLFIARLVEILRDLGVDAEREGDDIYVEGRKL 120
KEIKGDDMIHYIAEIFWHPDVLLASSLQKLFIARLVEILRDLGVDAEREGDDIYVEGRKL
Sbjct: 61 KEIKGDDMIHYIAEIFWHPDVLLASSLQKLFIARLVEILRDLGVDAEREGDDIYVEGRKL 120
Query: 121 SISIATVSPVSLKIHIGINVSTSGVPREVNAIGLDELGVDALEFMERSGRELVEEYEKVR 180
SISIATVSPVSLKIHIGINVSTSGVPREVNAIGLDELGVDALEFMERSGRELVEEYEKVR
Sbjct: 121 SISIATVSPVSLKIHIGINVSTSGVPREVNAIGLDELGVDALEFMERSGRELVEEYEKVR 180
Query: 181 KDSMKVRWVT 190
KDSMKVRWVT
Sbjct: 181 KDSMKVRWVT 190
>pir||H71245 hypothetical protein PH0223 - Pyrococcus horikoshii
>gi|3256612|dbj|BAA29295.1| (AP000001) 190aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 190
Score = 314 bits (797), Expect = 4e-85
Identities = 152/190 (80%), Positives = 173/190 (91%)
Query: 1 MINLDLLIIKDRRIDYDGSAIRSHWAYRNFGILGDSLVVFRGRCDVKVEEMVDIEDLRLK 60
M +++LLIIK+RRIDYDGSAIRSHWAYRNFGILGDSLVVFRG+C+VKVEEMVDIEDLRL+
Sbjct: 1 MNSMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLR 60
Query: 61 KEIKGDDMIHYIAEIFWHPDVLLASSLQKLFIARLVEILRDLGVDAEREGDDIYVEGRKL 120
KEIKGDDM+HYI E+FWHPD+LLASSLQKL IARLVE+L + G++A R GDDIYV GRKL
Sbjct: 61 KEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKL 120
Query: 121 SISIATVSPVSLKIHIGINVSTSGVPREVNAIGLDELGVDALEFMERSGRELVEEYEKVR 180
SISIATVSPVS+KIHIG+NV T GVP V+AIGL+ELG+D EFMERS + LVEE EKVR
Sbjct: 121 SISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVR 180
Query: 181 KDSMKVRWVT 190
KDS+KVRWVT
Sbjct: 181 KDSLKVRWVT 190
>sp|Q58215|Y805_METJA HYPOTHETICAL PROTEIN MJ0805 >gi|2128517|pir||E64400 conserved
hypothetical protein MJ0805 - Methanococcus jannaschii
>gi|1499628|gb|AAB98805.1| (U67525) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 221
Score = 123 bits (306), Expect = 1e-27
Identities = 68/187 (36%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 4 LDLLIIKDRRIDYDGSAIRSHWAYRNFGILGDSLVVFRGRCDVKVEEMVDIEDLRLKKEI 63
+ ++ +KDR +DY G I WA++ F I DS+VVFRGR +V E M D++D++ +K+I
Sbjct: 32 MSIIFVKDR-LDYTGKEIEPLWAFKTFDIQKDSIVVFRGRMEVTTENMKDLKDIKREKDI 90
Query: 64 K----GDDMIHYIAEIFWHPDVLLASSLQKLFIARLVEILRDLGVDAEREGDDIYVEGRK 119
K +D I+++ E F D+ Q+L + E++ + +R+GDD+Y E +K
Sbjct: 91 KTPIKSEDAINFVVEHFDVIDLKTIYLRQRLLVFIAKEVIESYNIKLKRDGDDLYFEDKK 150
Query: 120 LSISIATVSPVSLKIHIGINVSTSGVPREVNAIGLDELGV-DALEFMERSGRELVEEYEK 178
LS+ IA VS KIH+GINV + G V IGL++LG+ D + M +E +K
Sbjct: 151 LSVCIACKGTVSAKIHLGINVKSKGA-EHVKIIGLEDLGIKDIDKVMREIAINYAKEIDK 209
Query: 179 VRKDSMK 185
+ +D K
Sbjct: 210 IERDLRK 216
>pir||B69031 conserved hypothetical protein MTH1229 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622340|gb|AAB85718.1| (AE000890) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 212
Score = 113 bits (280), Expect = 1e-24
Identities = 69/179 (38%), Positives = 101/179 (55%), Gaps = 11/179 (6%)
Query: 16 YDGSAIRSHWAYRNFGILGDSLVVFRGRCDVKVEEMVDIEDLRLKKEIKGDDMIHYIAEI 75
YDGS I WA GI G S++ + G DVK +VD ED+ L EI+ ++++H+I E
Sbjct: 36 YDGSQIEPAWALSELGIKGSSIITWIGPMDVK--NIVDYEDVEL--EIRSEEVLHFIVEH 91
Query: 76 F-WHPDVL-LASSLQKLFIARLVEILRDLGVDAEREGDDIYVEGRKLSISIATVSPVSLK 133
F P L LA Q++ + L+E L GV REGDD+Y+ KL++SIAT S S+K
Sbjct: 92 FDEQPSSLRLAYHRQRILVMLLMEELMRTGVRTRREGDDLYIGSSKLTVSIATASVSSMK 151
Query: 134 IHIGINVSTSGVPREVNAIGL----DELGVDALEFM-ERSGRELVEEYEKVRKDSMKVR 187
IH+G+N+ G P +V+ IGL EL D ++ + E + E + + +D K R
Sbjct: 152 IHLGVNIHERGTPEDVDTIGLLDEKPELSADDIKVIAENVAMAYIHEIDSIEEDIAKTR 210
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65633275
Number of Sequences: 2977
Number of extensions: 2543210
Number of successful extensions: 6921
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6915
Number of HSP's gapped (non-prelim): 4
length of query: 190
length of database: 189,106,746
effective HSP length: 53
effective length of query: 137
effective length of database: 157,386,935
effective search space: 21562010095
effective search space used: 21562010095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)