BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0140 (PAB0140) DE:Hypothetical protein
         (298 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75210 hypothetical protein PAB0140 - Pyrococcus abyssi (st...   591  e-168
pir||B71246 hypothetical protein PH0225 - Pyrococcus horikoshii ...   420  e-116

>pir||B75210 hypothetical protein PAB0140 - Pyrococcus abyssi (strain Orsay)
           >gi|5457638|emb|CAB49129.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 298
           
 Score =  591 bits (1508), Expect = e-168
 Identities = 298/298 (100%), Positives = 298/298 (100%)

Query: 1   MISISGVNIDFRGELDDGFEEAFLGTFPRRYLPDVSQSKGGAHVVIDRFKGNKFRVFSVS 60
           MISISGVNIDFRGELDDGFEEAFLGTFPRRYLPDVSQSKGGAHVVIDRFKGNKFRVFSVS
Sbjct: 1   MISISGVNIDFRGELDDGFEEAFLGTFPRRYLPDVSQSKGGAHVVIDRFKGNKFRVFSVS 60

Query: 61  YGKVDEYKIESPVPSAYLNESPVFFLLQVAARAGAKINRTFITDSVALEVDGRGILFLGY 120
           YGKVDEYKIESPVPSAYLNESPVFFLLQVAARAGAKINRTFITDSVALEVDGRGILFLGY
Sbjct: 61  YGKVDEYKIESPVPSAYLNESPVFFLLQVAARAGAKINRTFITDSVALEVDGRGILFLGY 120

Query: 121 PHSGKSTISALALANNLNLLSTENTVVEAREDGIYVVGGTSVLVYDPRVEEIYNVSVPYT 180
           PHSGKSTISALALANNLNLLSTENTVVEAREDGIYVVGGTSVLVYDPRVEEIYNVSVPYT
Sbjct: 121 PHSGKSTISALALANNLNLLSTENTVVEAREDGIYVVGGTSVLVYDPRVEEIYNVSVPYT 180

Query: 181 DFTRSGYRIVEVNSERRSKSLEKGVKVELIVVLHTAFNFPGASFSPVTGRKIKKTLWYFA 240
           DFTRSGYRIVEVNSERRSKSLEKGVKVELIVVLHTAFNFPGASFSPVTGRKIKKTLWYFA
Sbjct: 181 DFTRSGYRIVEVNSERRSKSLEKGVKVELIVVLHTAFNFPGASFSPVTGRKIKKTLWYFA 240

Query: 241 TSLLKGMDYYEPGPLDLPITEEIMANLNNLLSKASSVRIVEAFGNHKDVLLRSINDEI 298
           TSLLKGMDYYEPGPLDLPITEEIMANLNNLLSKASSVRIVEAFGNHKDVLLRSINDEI
Sbjct: 241 TSLLKGMDYYEPGPLDLPITEEIMANLNNLLSKASSVRIVEAFGNHKDVLLRSINDEI 298


>pir||B71246 hypothetical protein PH0225 - Pyrococcus horikoshii
           >gi|3256614|dbj|BAA29297.1| (AP000001) 301aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 301
           
 Score =  420 bits (1068), Expect = e-116
 Identities = 199/301 (66%), Positives = 246/301 (81%), Gaps = 3/301 (0%)

Query: 1   MISISGVNIDFRGELDDGFEEAFLGTFPRRYLPDVSQSKGGAHVVIDRFKGNKFRVFSVS 60
           M+S +GVN+ F+GELDDGFE+AFL  F RRYLPDVS ++   H++++RFKG+ FRVF+VS
Sbjct: 1   MLSAAGVNVSFKGELDDGFEDAFLTVFSRRYLPDVSFTEAEPHIIVERFKGDTFRVFAVS 60

Query: 61  YGK---VDEYKIESPVPSAYLNESPVFFLLQVAARAGAKINRTFITDSVALEVDGRGILF 117
           Y +   +D+YKIESPVPSAY+NESP+FFLLQ  ARAGAKI + FITDSV++ +   G+LF
Sbjct: 61  YDEGNTIDKYKIESPVPSAYVNESPIFFLLQAVARAGAKIGKLFITDSVSISLGNYGVLF 120

Query: 118 LGYPHSGKSTISALALANNLNLLSTENTVVEAREDGIYVVGGTSVLVYDPRVEEIYNVSV 177
           LGYPHSGKSTIS LAL     +LSTENTV++ R+DG+YVVGGT VLVYDP++EEIY V V
Sbjct: 121 LGYPHSGKSTISTLALTEGFTILSTENTVIKPRKDGLYVVGGTDVLVYDPKIEEIYGVEV 180

Query: 178 PYTDFTRSGYRIVEVNSERRSKSLEKGVKVELIVVLHTAFNFPGASFSPVTGRKIKKTLW 237
           PY D T+SGYRI  + S +R K ++ GVK++LIVVLH AFN  GA FSPVTGRK+KK LW
Sbjct: 181 PYDDETKSGYRIKVIASNKRKKLMKNGVKIKLIVVLHAAFNCLGAGFSPVTGRKVKKILW 240

Query: 238 YFATSLLKGMDYYEPGPLDLPITEEIMANLNNLLSKASSVRIVEAFGNHKDVLLRSINDE 297
           YFATSLLKG+DYYEP PLD+PITE I+ N+N  L+ ASS+++VEAFGNHKD+L R IN E
Sbjct: 241 YFATSLLKGVDYYEPRPLDVPITETILENINKFLTLASSIKMVEAFGNHKDILFRIINGE 300

Query: 298 I 298
           I
Sbjct: 301 I 301


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109313537
Number of Sequences: 2977
Number of extensions: 4624504
Number of successful extensions: 10736
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10733
Number of HSP's gapped (non-prelim): 2
length of query: 298
length of database: 189,106,746
effective HSP length: 57
effective length of query: 241
effective length of database: 154,992,987
effective search space: 37353309867
effective search space used: 37353309867
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)