BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0141 (PAB0141) DE:Hypothetical protein
(318 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75210 hypothetical protein PAB0141 - Pyrococcus abyssi (st... 652 0.0
pir||D71246 hypothetical protein PH0227 - Pyrococcus horikoshii ... 547 e-155
pir||H72472 hypothetical protein APE2425 - Aeropyrum pernix (str... 202 4e-51
pir||B75078 hypothetical protein PAB1694 - Pyrococcus abyssi (st... 146 2e-34
pir||F71066 hypothetical protein PH1228 - Pyrococcus horikoshii ... 145 5e-34
emb|CAA76303.1| (Y16585) Orf322 [Methanosarcina mazei] 139 4e-32
gi|11499671 conserved hypothetical protein [Archaeoglobus fulgid... 131 1e-29
gb|AAC27019.1| (AF032114) unknown [Methylobacterium extorquens] 118 1e-25
sp|Q58822|YE27_METJA HYPOTHETICAL PROTEIN MJ1427 >gi|2128851|pir... 117 2e-25
sp|O26918|Y830_METTH HYPOTHETICAL PROTEIN MTH830 >gi|7429726|pir... 104 1e-21
gb|AAK40700.1| Conserved hypothetical protein [Sulfolobus solfat... 87 3e-16
pir||A72632 hypothetical protein APE1512 - Aeropyrum pernix (str... 82 9e-15
>pir||D75210 hypothetical protein PAB0141 - Pyrococcus abyssi (strain Orsay)
>gi|5457640|emb|CAB49131.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 318
Score = 652 bits (1665), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL
Sbjct: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
Query: 61 KRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRRG 120
KRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRRG
Sbjct: 61 KRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRRG 120
Query: 121 LITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKKLEEV 180
LITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKKLEEV
Sbjct: 121 LITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKKLEEV 180
Query: 181 RKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQFWSDY 240
RKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQFWSDY
Sbjct: 181 RKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQFWSDY 240
Query: 241 QENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRFLEENGDG 300
QENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRFLEENGDG
Sbjct: 241 QENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRFLEENGDG 300
Query: 301 GEVFVTKANNRGAVVLDG 318
GEVFVTKANNRGAVVLDG
Sbjct: 301 GEVFVTKANNRGAVVLDG 318
>pir||D71246 hypothetical protein PH0227 - Pyrococcus horikoshii
>gi|3256616|dbj|BAA29299.1| (AP000001) 316aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 316
Score = 547 bits (1394), Expect = e-155
Identities = 257/318 (80%), Positives = 292/318 (91%), Gaps = 2/318 (0%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
MVRI APAHLH GNPDLSGDMGRLFGTLGFAI++PYLE+ ++ +E KDKANDKDAL FL
Sbjct: 1 MVRIIAPAHLHAGNPDLSGDMGRLFGTLGFAIEYPYLEVEIETSE--KDKANDKDALRFL 58
Query: 61 KRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRRG 120
+RLRE Y+FPPV++EI HYIPKWVG+GFHTTLALTLGLG++++Y+L LSLEDIAL VRRG
Sbjct: 59 ERLREKYEFPPVKIEIKHYIPKWVGLGFHTTLALTLGLGINRIYNLGLSLEDIALTVRRG 118
Query: 121 LITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKKLEEV 180
LITALGFYAVK+GGFIVEGGFPVN+REKVVPPLIFR +P +WFFVVAIPETPRK LEEV
Sbjct: 119 LITALGFYAVKLGGFIVEGGFPVNKREKVVPPLIFRENIPENWFFVVAIPETPRKDLEEV 178
Query: 181 RKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQFWSDY 240
R+VED IL NLKKMPPELADRLSRIVLMKILPAFVERDIK FGEGLYQFN+LLG+FWSDY
Sbjct: 179 RRVEDEILTNLKKMPPELADRLSRIVLMKILPAFVERDIKAFGEGLYQFNNLLGKFWSDY 238
Query: 241 QENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRFLEENGDG 300
QE++YCC++V+EGIK+MLEDAYCACQ+SWGPTFYG+VD +AE VRDKIK+ EENGD
Sbjct: 239 QESIYCCELVSEGIKVMLEDAYCACQSSWGPTFYGLVDDRHKAEIVRDKIKKLFEENGDS 298
Query: 301 GEVFVTKANNRGAVVLDG 318
GEVF+TKANN GAV+LDG
Sbjct: 299 GEVFITKANNTGAVILDG 316
>pir||H72472 hypothetical protein APE2425 - Aeropyrum pernix (strain K1)
>gi|5106129|dbj|BAA81440.1| (AP000064) 326aa long
hypothetical protein [Aeropyrum pernix]
Length = 326
Score = 202 bits (509), Expect = 4e-51
Identities = 118/323 (36%), Positives = 185/323 (56%), Gaps = 13/323 (4%)
Query: 2 VRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVK-----RAEGNKDKANDKD- 55
VR+ AP+H+H GN D+ G +GRL+GT+G A+ P L + EG + +D
Sbjct: 5 VRVSAPSHVHAGNYDIEGSIGRLYGTVGLALGEPRLTLEASPSHSVEVEGGSRRREAEDL 64
Query: 56 ALVFLKRL-RESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLN-LSLEDI 113
A ++L ++ V++ I IP VG+G T LAL++G + ++ L L L ++
Sbjct: 65 ARLYLDKVGSRGCRLEGVKIRIYEEIPAHVGLGSTTALALSIGSSIYRICGLEPLDLREL 124
Query: 114 ALAVRRGLITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETP 173
A+ R L++ALG Y+ + GG IV+GGF R E+ PPL+FR VPG VVA+PE P
Sbjct: 125 AVTAGRSLVSALGLYSFEQGGLIVDGGFV--RGERRPPPLVFRAHVPGSVKVVVALPERP 182
Query: 174 RKKLEEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLL 233
K+ ++++ ED +L + M P +A SR+VL+ I+ E + +FN L
Sbjct: 183 IAKILDIKRREDELLARMPPMDPSMAGWASRVVLLGIMANAAEGRWGEAARWMGEFNRRL 242
Query: 234 GQFWSDYQENVYCCDIVNEGIKLMLE-DAYCACQTSWGPTFYGIVDSLSRAENVRDKIKR 292
G++W+ Q +YCC V E ++ M++ A+ Q+SWGPT YG+ + RA +V + +R
Sbjct: 243 GEYWAGEQGGIYCCSEVEEIVRAMVDAGAWSGLQSSWGPTVYGLTPA-RRAASVLEAARR 301
Query: 293 FLEENGDGGEVFVTKANNRGAVV 315
+E G GG+V+VT +N GAV+
Sbjct: 302 AVERVG-GGKVWVTSVDNVGAVI 323
>pir||B75078 hypothetical protein PAB1694 - Pyrococcus abyssi (strain Orsay)
>gi|5458439|emb|CAB49927.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 322
Score = 146 bits (366), Expect = 2e-34
Identities = 97/317 (30%), Positives = 163/317 (50%), Gaps = 15/317 (4%)
Query: 4 IRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVF---L 60
+R P LH G D +G +GR FG++G A++ Y EI V A +A+++D V +
Sbjct: 3 VRTPRRLHLGMIDPTGSLGRRFGSIGVALEGGY-EIKVTPAGSLTIEADEEDRKVIERVV 61
Query: 61 KRLRESYDFP-PVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRR 119
K L Y+ +E+ IP+ +G+G T L L + + ++ + +ED+A ++ R
Sbjct: 62 KELNLKYETGLDYYIEVRRSIPRHIGLGSTTQLTLAIASAILRIAKKEVPIEDVAFSLGR 121
Query: 120 GLITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKKLEE 179
+ Y K GG +++GG + PPL+ R E P +W F++ IP+ R EE
Sbjct: 122 SRESGASLYVFKYGGLVIDGGV-----KDKYPPLVMRHEFPENWAFLLVIPKVKRGLSEE 176
Query: 180 VRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQFWSD 239
K +I+ E+A +S +L+ ++PA VERDI++FG L + L+G +S
Sbjct: 177 EEK---DIMFGSNFGKVEIAKEISHRLLLGLIPALVERDIESFGRFLSEIQELVGSHFST 233
Query: 240 YQENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRFLEENGD 299
+Q + DI ++++ E Y A Q+SWGPT YG++ V+ K+ L + G
Sbjct: 234 FQGGTFREDI-GIIVEILKELTYGAGQSSWGPTVYGLIKK-EEFNLVKTKVIDSLNDYGI 291
Query: 300 GGEVFVTKANNRGAVVL 316
EV + N+GA ++
Sbjct: 292 KAEVELGIPRNKGAEIV 308
>pir||F71066 hypothetical protein PH1228 - Pyrococcus horikoshii
>gi|3257645|dbj|BAA30328.1| (AP000005) 325aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 325
Score = 145 bits (363), Expect = 5e-34
Identities = 93/320 (29%), Positives = 169/320 (52%), Gaps = 15/320 (4%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
+V +R P LH G D +G +GR FG++G A++ Y +I V A +A+ +D V
Sbjct: 3 VVIVRTPRRLHLGIIDPTGSLGRKFGSIGVALEGGY-DIKVTPAGSLTIEADKEDREVIE 61
Query: 61 KRLRE---SYDFP-PVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALA 116
K ++E Y+ +E+ IP+ +G+G T L L + + ++ ++ +E++A +
Sbjct: 62 KIVKELNLEYETGLDYYIEVRKSIPRHIGLGSTTQLTLAIASAILRIAKKDIPIEEVAFS 121
Query: 117 VRRGLITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKK 176
++R + G Y K GGF+V+GG + PPLI R + P +W F++ IP+ R
Sbjct: 122 LKRARESGAGLYIFKFGGFVVDGGV-----KDTYPPLIMRHDFPENWAFILVIPKVKRGL 176
Query: 177 LEEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQF 236
EE E+ I+ +A ++ +++ ++P+ +E++I+ FG L L+G+
Sbjct: 177 SEE---EEEGIMFGSNFGNVNIAKEITYRLMLGLVPSLIEKNIEKFGRFLTDIQELVGKH 233
Query: 237 WSDYQENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRFLEE 296
++ +Q + DI ++++ E Y A Q+SWGPT YG++ +VR K+ L++
Sbjct: 234 FATFQGGTFREDI-KTVVEILKETTYGAGQSSWGPTVYGLIRK-EEYNSVRVKVADLLDD 291
Query: 297 NGDGGEVFVTKANNRGAVVL 316
G E+ + N+GA VL
Sbjct: 292 YGIKAEIELGIPRNKGAEVL 311
>emb|CAA76303.1| (Y16585) Orf322 [Methanosarcina mazei]
Length = 321
Score = 139 bits (347), Expect = 4e-32
Identities = 97/328 (29%), Positives = 173/328 (52%), Gaps = 19/328 (5%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
M+ + +P+ LH DL+ ++GR+ G +G ++ P LEI+ A+ + + A L
Sbjct: 1 MINVVSPSRLHLTLIDLNAEIGRVDGGVGITLESPSLEISASEADTVEVVGSSLLAGRML 60
Query: 61 KRLRESY-DFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRR 119
K + + +++ I +P VG+G T AL++ ++++Y L S+ ++A+AV R
Sbjct: 61 KAAKAVIPEGKGIKIHIKRDLPDHVGLGSGTQAALSVAAAINEIYGLGKSVRELAVAVGR 120
Query: 120 GLITALGFYAVKVGGFIVEGG--------FPVNRREKVVP-PLIFRGEVPGDWFFVVAIP 170
G + +G A + GGFI++GG F + ++ P P++FR P DW V+AIP
Sbjct: 121 GGTSGIGVAAFEYGGFILDGGHRFRDKGAFSPSAASRMPPGPVLFRRAFP-DWNIVLAIP 179
Query: 171 ETPRKKLEEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFN 230
T K + + +V+ I + +P +S ++LM++LPA +E DI +FG + N
Sbjct: 180 NT--KGVHDAEEVD--IFKKACPIPLSEVQEISHVILMQMLPALIEEDIDSFGRAV---N 232
Query: 231 HLLGQFWSDYQENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKI 290
H + + + ++N + A + +S+GP YGIV+S A ++ ++
Sbjct: 233 HFQTVGFKKREVELQPETVLNVMKYMQDNGASGSGVSSFGPVVYGIVESSVEAGRLQKEV 292
Query: 291 KRFLEENGDGGEVFVTKANNRGAVVLDG 318
+R L+E+ GGEV +TK NRGA + G
Sbjct: 293 QRMLDES-LGGEVLLTKGRNRGADIFGG 319
>gi|11499671 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3183451|sp|O28190|YK89_ARCFU HYPOTHETICAL PROTEIN
AF2089 >gi|7429725|pir||H69510 conserved hypothetical
protein AF2089 - Archaeoglobus fulgidus
>gi|2648456|gb|AAB89167.1| (AE000960) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 313
Score = 131 bits (326), Expect = 1e-29
Identities = 98/326 (30%), Positives = 158/326 (48%), Gaps = 26/326 (7%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGN--KDKANDKDALV 58
M+R+R P+ +H DL+G +GR+ G +G A++ P++EI K +E K + +++
Sbjct: 1 MLRLRTPSRIHITLIDLNGSIGRVDGGVGLALEEPHIEIKAKESETFVLKGEPINRERFE 60
Query: 59 FLKRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVR 118
Y E+E++ VG+G T ++L +G S+LY LNL+ IA +
Sbjct: 61 IAAAKMAEYCGRGAEIEVVSDYDAHVGLGSGTQISLAVGRAFSELYGLNLTTRQIAEIMG 120
Query: 119 RGLITALGFYAVKVGGFIVEGGFPVNRREKVVP---------PLIFRGEVPGDWFFVVAI 169
RG + +G GG +V+GG ++ +P P+I R + P DW V+AI
Sbjct: 121 RGGTSGIGVAVFDHGGLVVDGGHSTKEKKSFLPSSASRAKPAPMIARLDFP-DWNVVLAI 179
Query: 170 PETPRKKLEEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQF 229
P+ K R+V N+ + +P E + ++LMK+LPA VE D+ FG+ L +
Sbjct: 180 PDL--KGFFGEREV--NLFQKSCPVPLEDVREICHLILMKMLPAVVEADLDEFGKALKRI 235
Query: 230 NHLLGQFWSDYQENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDK 289
LG ++ ++ E IK + A C +S GPT Y I D S A +
Sbjct: 236 QE-LGFKKAEVEQ-------YGELIKGCFDLADCIGMSSTGPTVYAITD--SNAGGIERS 285
Query: 290 IKRFLEENGDGGEVFVTKANNRGAVV 315
++ + E G VTKA NRG +
Sbjct: 286 LRDYFAEKGYECRTIVTKARNRGVEI 311
>gb|AAC27019.1| (AF032114) unknown [Methylobacterium extorquens]
Length = 335
Score = 118 bits (292), Expect = 1e-25
Identities = 91/295 (30%), Positives = 137/295 (45%), Gaps = 23/295 (7%)
Query: 2 VRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRA--------EGNKDKAND 53
VR+RAPA LH G DL+G +GR FG++G A+D P +++ + A E + +AN
Sbjct: 27 VRVRAPARLHFGFLDLNGGLGRRFGSIGLALDAPAVQLVARPAKRVSASGPEAERVRANL 86
Query: 54 KDALVFLKRLRESYDFP-PVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLED 112
A +L D P V VEI IP G G T LAL + +++L + D
Sbjct: 87 LAAAAYL-------DVPEAVAVEIEESIPAHAGFGSGTQLALAVAAALARLNGRPFAPAD 139
Query: 113 IALAVRRGLITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPET 172
A + RG + +G A GG IV+GG PP+I R PGDW V+ + E
Sbjct: 140 FADVLDRGNRSGVGLAAFTEGGLIVDGG---RDGSGAPPPVIARLPYPGDWRVVLILDEA 196
Query: 173 PRKKLEEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHL 232
+ R+ E +L A + RIVLM++LPA + FG G+
Sbjct: 197 -MTGVHGSRETE--AFRDLPPFDAGQAAEICRIVLMQVLPAAATAEPNGFGAGITAIQKR 253
Query: 233 LGQFWSDYQENVYCCDIVNEGIKLMLEDAYCAC-QTSWGPTFYGIVDSLSRAENV 286
+G ++ +Q + V + + + + Q+SWGPT + +V S AE +
Sbjct: 254 IGDHFAPHQGGRFASPAVADALAAIAQAGVPGYGQSSWGPTGFALVPSQKEAETL 308
>sp|Q58822|YE27_METJA HYPOTHETICAL PROTEIN MJ1427 >gi|2128851|pir||B64478 hypothetical
protein MJ1427 - Methanococcus jannaschii
>gi|1592332|gb|AAB99449.1| (U67584) M. jannaschii
predicted coding region MJ1427 [Methanococcus
jannaschii]
Length = 328
Score = 117 bits (290), Expect = 2e-25
Identities = 99/345 (28%), Positives = 164/345 (46%), Gaps = 59/345 (17%)
Query: 4 IRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFLKRL 63
I+ P+ +H G DL+G +GR+ G +G A++ P ++I + K +D ++ F K+L
Sbjct: 3 IQTPSRIHMGLIDLNGSIGRVDGGIGLALEEPNIKI--------EGKESDDISIEFDKKL 54
Query: 64 RESY--DF---------------------PPVEVEILHYIPKWVGVGFHTTLALTLGLGV 100
E Y D+ V+++IL P G+G T L+L +G +
Sbjct: 55 IEKYGEDYIKSVRDRVYNTAIKVLDVIGGEGVDLKILSLFPAHSGLGSGTQLSLAVGKLI 114
Query: 101 SKLYSLNLSLEDIALAVRRGLITALGFYAVKVGGFIVEGGF------------PVNRREK 148
SK+Y+ ++ +IA RG + +G A + GGF+++GG P + +
Sbjct: 115 SKIYNKEMNAYNIAKITGRGGTSGIGIGAFEYGGFLIDGGHSFGKGKDKEDFRPSSASKG 174
Query: 149 VVP-PLIFRGEVPGDWFFVVAIPETPRKKLEEVRKVEDNILENLKKMPPELADRLSRIVL 207
V P P+IFR + DW ++ IP K K E +I + +P +++ +VL
Sbjct: 175 VKPAPIIFRHDF--DWETILIIP----KGEHVYGKKEVDIFKKYCPVPLNEVEKICHLVL 228
Query: 208 MKILPAFVERDIKTFGEGLYQFNHLLGQFWSDYQENVYCCDIVNEGIKLMLEDAYCACQT 267
MK++PA VE+++ FGE + + +L E DIV + I + +D Y A +
Sbjct: 229 MKMMPAVVEKNLDDFGEVINKLQYL----GFKKVELSLQSDIVKDLINELHKDVY-AGLS 283
Query: 268 SWGPTFYGIVDSLSRAENVRDKIKRFLEENGDGGEVFVTKANNRG 312
S+GPT Y D E D ++ G GE+ +TKANN G
Sbjct: 284 SFGPTIYAFGDKKLIVEKAND----IFDKYGVYGEIIITKANNVG 324
>sp|O26918|Y830_METTH HYPOTHETICAL PROTEIN MTH830 >gi|7429726|pir||G69210 conserved
hypothetical protein MTH830 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621920|gb|AAB85328.1| (AE000860) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 329
Score = 104 bits (257), Expect = 1e-21
Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 51/343 (14%)
Query: 4 IRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFLK-- 61
I P+ LH DL+G+ GRL G +G ++ P L + ++ A+D + F
Sbjct: 7 INTPSRLHLTLIDLNGERGRLDGGVGITLNEPELVVGLE--------ASDDMGVEFTSHA 58
Query: 62 --RLRESYDFPPVEV-----------EILHY-----IPKWVGVGFHTTLALTLGLGVSKL 103
+LRE Y +E E H+ P G+G T L+L V++
Sbjct: 59 EGKLREEYRSKIMEAARRTLKHIGSDEKFHFTVRSMFPAHSGLGSGTQLSLATARLVAEY 118
Query: 104 YSLNLSLEDIALAVRRGLITALGFYAVKVGGFIVEGG---------FPVNRREKVVPPLI 154
+ + + ++A V RG + +G + + GGFIV+ G P + PP+I
Sbjct: 119 HGMKFTARELAHIVGRGGTSGIGVASFEDGGFIVDAGHSSREKSDFLPSSASSASPPPVI 178
Query: 155 FRGEVPGDWFFVVAIPETPRKKLEEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAF 214
R + P +W ++AIPE R + E NI + +P +RLS I+LMK++PA
Sbjct: 179 ARYDFPEEWNIIIAIPEIDRSVSG---RREVNIFQEYCPLPLRDVERLSHIILMKMMPAI 235
Query: 215 VERDIKTFGEGLYQFNHLLGQFWSDYQENVYCCDIVNEGIKLMLE-DAYCACQTSWGPTF 273
+E DI+ FGE + N + G + + + +++ I M+ A A +S+GP
Sbjct: 236 LEGDIEAFGESV---NEIQGTGFKRIERELQ-DPLIDRIIDSMISAGAPGAGMSSFGPAV 291
Query: 274 YGIVDSLSRAENVRDKIKRFLEENGDGGEVFVTKANNRGAVVL 316
Y + D + NV + + G + VT NRGA ++
Sbjct: 292 YSVTD--EKPGNVAGAVAEIM----GPGRIIVTGGRNRGAFMI 328
>gb|AAK40700.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 292
Score = 87.0 bits (212), Expect = 3e-16
Identities = 81/316 (25%), Positives = 139/316 (43%), Gaps = 42/316 (13%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
M++I + +H DL G GRL G G A+ +P + + GN F
Sbjct: 1 MIKIVGLSRIHITLFDLEGKYGRLDGGAGVALKYPRIVVR----SGN----------CFK 46
Query: 61 KRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRRG 120
+ +D P + +E + +G+G T L++ ++ L+ ++A V+RG
Sbjct: 47 PEVSLPFDVPKICIE--EDFEQHIGLGHTTQYLLSVAKLAAEYNFKRLNSYELAKLVKRG 104
Query: 121 LITALGFYAVKVGGFIVEGGFPVNRREKVV---------PPLIFRGEVPGDWFFVVAIPE 171
+ +G YA + GGFIV+GG + +++ PPLI R P W+ V +
Sbjct: 105 GTSGVGVYAFEYGGFIVDGGHSTKVKRELLPSDFSSAPPPPLIARLNFP--WYIYVNVVR 162
Query: 172 TPRKKL--EEVRKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQF 229
R+ +E+ + LE L D L+R+VLM+++P+ ERD+ EG
Sbjct: 163 GGRRVFGKDEINAFKQAKLEGL--------DTLARVVLMELIPSVAERDL----EGALNA 210
Query: 230 NHLLGQFWSDYQENVYCCDIVNEGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDK 289
L+ E D V + + M++ + A +S+GP Y V S + + +
Sbjct: 211 ISLIQDLGFKKVEVFLQTDEVKKLMNDMVKAGFPAGLSSFGPAVYTFVSSKREGDELISR 270
Query: 290 IKRFLEE-NGDGGEVF 304
F+ E N +G +VF
Sbjct: 271 FGGFVSEPNNEGAKVF 286
>pir||A72632 hypothetical protein APE1512 - Aeropyrum pernix (strain K1)
>gi|5105197|dbj|BAA80511.1| (AP000061) 307aa long
hypothetical protein [Aeropyrum pernix]
Length = 307
Score = 81.9 bits (199), Expect = 9e-15
Identities = 85/319 (26%), Positives = 134/319 (41%), Gaps = 32/319 (10%)
Query: 1 MVRIRAPAHLHTGNPDLSGDMGRLFGTLGFAIDFPYLEITVKRAEGNKDKANDKDALVFL 60
+V + + LH G + G ++G GF ++ P + + G D D L
Sbjct: 4 VVYVEGGSRLHAGFHIVDPQRG-VWGGAGFYVEEPRVRVEAWDC-GEARWEVDSDIATLL 61
Query: 61 KRLRESYDFPPVEVEILHYIPKWVGVGFHTTLALTLGLGVSKLYSLNLSLEDIALAVRRG 120
+R ++ ++I P+ +G+G T L+L + + L L S+ +A + RG
Sbjct: 62 ERAGLAWGC----LKIASRPPRHMGLGSTTQLSLAASMALLALKGLRPSIPSLAARLGRG 117
Query: 121 LITALGFYAVKVGGFIVEGGFPVNRREKVVPPLIFRGEVPGDWFFVVAIPETPRKKLEEV 180
+A+G GGF+++ G V P I VP DW FV+ IP+ EE
Sbjct: 118 RFSAVGTLLAVHGGFVLDSG-------SVSTPPISAVRVPEDWRFVLVIPQL-EPGFEEG 169
Query: 181 RKVEDNILENLKKMPPELADRLSRIVLMKILPAFVERDIKTFGEGLYQFNHLLGQFWSDY 240
R ED L+ D SR L+ + D+ EGL G + +
Sbjct: 170 R-AEDLALKTAGLRAARGGDLRSRGALL-LAVGIARGDLDIALEGLSSMQAGTGLLFQEV 227
Query: 241 QENVYCCDIVN-------EGIKLMLEDAYCACQTSWGPTFYGIVDSLSRAENVRDKIKRF 293
Q V+ D++N G+KL Q+SWGPT Y I S A++ ++
Sbjct: 228 QGAVFRRDLMNIVDEASRNGVKL--------AQSSWGPTLYTISHE-STADSDARMLRAI 278
Query: 294 LEENGDGGEVFVTKANNRG 312
L +G GEV VT+ N+G
Sbjct: 279 LRSHGIRGEVLVTRPRNKG 297
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.144 0.434
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127922468
Number of Sequences: 2977
Number of extensions: 5661818
Number of successful extensions: 15053
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 15014
Number of HSP's gapped (non-prelim): 12
length of query: 318
length of database: 189,106,746
effective HSP length: 51
effective length of query: 267
effective length of database: 158,583,909
effective search space: 42341903703
effective search space used: 42341903703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)