BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0142 (PAB0142) DE:Hypothetical protein
(383 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75210 hypothetical protein PAB0142 - Pyrococcus abyssi (st... 752 0.0
pir||E71246 hypothetical protein PH0228 - Pyrococcus horikoshii ... 679 0.0
pir||A72480 hypothetical protein APE2481 - Aeropyrum pernix (str... 318 7e-86
gi|11498456 A. fulgidus predicted coding region AF0850 [Archaeog... 208 6e-53
gb|AAK40557.1| Conserved hypothetical protein [Sulfolobus solfat... 70 5e-11
>pir||E75210 hypothetical protein PAB0142 - Pyrococcus abyssi (strain Orsay)
>gi|5457641|emb|CAB49132.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 383
Score = 752 bits (1920), Expect = 0.0
Identities = 383/383 (100%), Positives = 383/383 (100%)
Query: 1 MVKAIGIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDA 60
MVKAIGIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDA
Sbjct: 1 MVKAIGIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDA 60
Query: 61 IVGPSGYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFT 120
IVGPSGYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFT
Sbjct: 61 IVGPSGYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFT 120
Query: 121 PGVIHLPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKVNLIAVEIGFAYTS 180
PGVIHLPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKVNLIAVEIGFAYTS
Sbjct: 121 PGVIHLPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKVNLIAVEIGFAYTS 180
Query: 181 AMAVKGGQIVDGMAGTAGFTGYLGMGFMDSELAYALANTLEDFSKLKLFEGGAAYIAGID 240
AMAVKGGQIVDGMAGTAGFTGYLGMGFMDSELAYALANTLEDFSKLKLFEGGAAYIAGID
Sbjct: 181 AMAVKGGQIVDGMAGTAGFTGYLGMGFMDSELAYALANTLEDFSKLKLFEGGAAYIAGID 240
Query: 241 PFKVSPEEFVKLAKEDEKVEMGYRAMIEAIVKDVFTLLPSTEPDAIYLSGRFSRIPQFFS 300
PFKVSPEEFVKLAKEDEKVEMGYRAMIEAIVKDVFTLLPSTEPDAIYLSGRFSRIPQFFS
Sbjct: 241 PFKVSPEEFVKLAKEDEKVEMGYRAMIEAIVKDVFTLLPSTEPDAIYLSGRFSRIPQFFS 300
Query: 301 DVKEALEDAFSRYGFGIEVRKLESRAKAKEAAEGGAVIANGIAGGKYKELVDVMKLRESS 360
DVKEALEDAFSRYGFGIEVRKLESRAKAKEAAEGGAVIANGIAGGKYKELVDVMKLRESS
Sbjct: 301 DVKEALEDAFSRYGFGIEVRKLESRAKAKEAAEGGAVIANGIAGGKYKELVDVMKLRESS 360
Query: 361 GKIFDWVKLSERDKLKAFERLEL 383
GKIFDWVKLSERDKLKAFERLEL
Sbjct: 361 GKIFDWVKLSERDKLKAFERLEL 383
>pir||E71246 hypothetical protein PH0228 - Pyrococcus horikoshii
>gi|3256617|dbj|BAA29300.1| (AP000001) 383aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 383
Score = 679 bits (1733), Expect = 0.0
Identities = 335/383 (87%), Positives = 363/383 (94%)
Query: 1 MVKAIGIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDA 60
MVKAIGIDSGTKSMDIFGFDDE+GE+IVDVAVDRNEVTKNPRII+DILREVQREHG IDA
Sbjct: 1 MVKAIGIDSGTKSMDIFGFDDETGEVIVDVAVDRNEVTKNPRIIVDILREVQREHGTIDA 60
Query: 61 IVGPSGYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFT 120
IVGPSGYGIPLKPAREAT+EEIALATFITK+DVERRLKIVGLRELMVLMREA+DLNIYFT
Sbjct: 61 IVGPSGYGIPLKPAREATNEEIALATFITKADVERRLKIVGLRELMVLMREAKDLNIYFT 120
Query: 121 PGVIHLPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKVNLIAVEIGFAYTS 180
PGVIHLPTVPEWRKAN+IDLGTSDK+FTV LSI+RH+E+EG+PY+KVNLIAVEIGFAYTS
Sbjct: 121 PGVIHLPTVPEWRKANKIDLGTSDKVFTVVLSIVRHSEREGIPYDKVNLIAVEIGFAYTS 180
Query: 181 AMAVKGGQIVDGMAGTAGFTGYLGMGFMDSELAYALANTLEDFSKLKLFEGGAAYIAGID 240
AMAVK GQIVD MAGTAGFTGYLGMGFMDSELAYALAN LEDFSKLKLFEGGAAYI GID
Sbjct: 181 AMAVKNGQIVDAMAGTAGFTGYLGMGFMDSELAYALANALEDFSKLKLFEGGAAYIGGID 240
Query: 241 PFKVSPEEFVKLAKEDEKVEMGYRAMIEAIVKDVFTLLPSTEPDAIYLSGRFSRIPQFFS 300
PF+VSPEEFVKLAKEDE V GY AMIE IVKDVF+LLPS PDAIYLSGRFSRIP+FF
Sbjct: 241 PFEVSPEEFVKLAKEDENVAKGYNAMIEGIVKDVFSLLPSVIPDAIYLSGRFSRIPEFFK 300
Query: 301 DVKEALEDAFSRYGFGIEVRKLESRAKAKEAAEGGAVIANGIAGGKYKELVDVMKLRESS 360
DVKE+LE+AFS YGF IEVRKLESRAKAKEAAEGGA++AN IAGG Y+EL++V+KLRESS
Sbjct: 301 DVKESLEEAFSMYGFSIEVRKLESRAKAKEAAEGGAILANAIAGGIYRELIEVLKLRESS 360
Query: 361 GKIFDWVKLSERDKLKAFERLEL 383
GKIFDWV LS+RD+LK FE+LE+
Sbjct: 361 GKIFDWVHLSDRDRLKVFEKLEI 383
>pir||A72480 hypothetical protein APE2481 - Aeropyrum pernix (strain K1)
>gi|5106186|dbj|BAA81497.1| (AP000064) 385aa long
hypothetical protein [Aeropyrum pernix]
Length = 385
Score = 318 bits (806), Expect = 7e-86
Identities = 178/383 (46%), Positives = 241/383 (62%), Gaps = 13/383 (3%)
Query: 5 IGIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDAIVGP 64
+GID GT SMD+ GFDDES + ++ ++ R+EVT++P + + I+ E + G +DA+V P
Sbjct: 1 MGIDPGTGSMDVLGFDDESNNVFLEESIPRDEVTRDPSLPLRIVEEASAKVGGLDAVVAP 60
Query: 65 SGYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFTPGVI 124
SGYG+PLK A E +I ATFI SD L+IVGLR LM L + DL +FTPGVI
Sbjct: 61 SGYGMPLKRASETAPGDICEATFIHSSDEVLGLRIVGLRRLMALFASS-DLPAWFTPGVI 119
Query: 125 HLPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKVNLIAVEIGFAYTSAMAV 184
HLPTVP WRK RID+GT+DK++TVA ++ E GV E IAVE G AYT+A+AV
Sbjct: 120 HLPTVPAWRKVGRIDMGTADKLYTVAAALRTEVEYHGVEPEAARFIAVEAGMAYTAAVAV 179
Query: 185 KGGQIVDGMAGTAGFTGYLGMGFMDSELAYALANTLEDFSKLKLFEGGAAYIAGIDPFKV 244
GG++VDG+ GT+GF G++G G MD E AYALA FSK LF+GGA ++AG+
Sbjct: 180 VGGKVVDGVGGTSGFHGFMGGGAMDGEAAYALAAVAPRFSKSLLFKGGAGWVAGVS---- 235
Query: 245 SPEEFVKLAKEDEKVEMGYRAMIEAIVKDVFTLLPSTEPDA----IYLSGRFSRIPQFFS 300
SP E + A E +E + E +VK V TLLPS P+ +Y+SGR + + S
Sbjct: 236 SPVELEEKASEGGGLE-ALEMLGEGVVKSVATLLPSLRPEGGEVRVYVSGRLFSLGRLGS 294
Query: 301 DVKEALEDAFSRYGFGIEVRKLES-RAKAKEAAEGGAVIANGIAGGKYKELVDVMKLRES 359
+++ L D S G V +E +K KE A G A++A+G+AGG+YK LVD ++L S
Sbjct: 295 ELRSRLRDFISSIGLTPRVLTIERLGSKTKEGASGAALVASGLAGGRYKWLVDHLELERS 354
Query: 360 SGKIFDWVKLSERDKLKAFERLE 382
SG IFD + + E L+ RLE
Sbjct: 355 SGSIFDHLPVDE--DLRRAVRLE 375
>gi|11498456 A. fulgidus predicted coding region AF0850 [Archaeoglobus fulgidus]
>gi|7483497|pir||B69356 hypothetical protein AF0850 -
Archaeoglobus fulgidus >gi|2649758|gb|AAB90394.1|
(AE001045) A. fulgidus predicted coding region AF0850
[Archaeoglobus fulgidus]
Length = 337
Score = 208 bits (525), Expect = 6e-53
Identities = 127/362 (35%), Positives = 200/362 (55%), Gaps = 46/362 (12%)
Query: 6 GIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDAIVGPS 65
GID GT S D+ +D G+++ + EV +P +I++++ E E G S
Sbjct: 5 GIDPGTGSYDVVAIED--GKVVFRKNIPTEEVRASPDVIVEVIEESGAE-----VAAGLS 57
Query: 66 GYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFTPGVIH 125
GYG+P+K E + ++ L T S+ + +GLR ++ ++E ++N+Y P VIH
Sbjct: 58 GYGLPVKRFSELDEVDLLLMTLNFDSE-----RAIGLRNIIKAVKE-RNVNLYTVPAVIH 111
Query: 126 LPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKVNLIAVEIGFAYTSAMAVK 185
LPTVP WRK NRID+GT+DK+ + L++ + +E+E + K+N I E+G + + +AV+
Sbjct: 112 LPTVPPWRKMNRIDIGTADKLCSAVLAVAKLSEEEEL--TKLNFILAEVGEGFNAFIAVR 169
Query: 186 GGQIVDGMAGTAGFTGYLGMGFMDSELAYALANTLEDFSKLKLFEGGAAYIAGIDPFKVS 245
G+IVDGM GT F GY +G MD+ELAY + +F K +F GG A +KV+
Sbjct: 170 NGRIVDGMGGTTSFPGYSSLGAMDAELAYIIG----EFPKKLIFSGGVKSFA--SEWKVN 223
Query: 246 PEEFVKLAKEDEKVEMGYRAMIEAIVKDVFTLLPSTEPDAIYLSGRFSRIPQFFSDVKEA 305
E + + E ++K + + ST+ D LSGRF+ DV
Sbjct: 224 ENEVTNI-------------LSEFVLKGIRAMEVSTDADFYMLSGRFA------PDVLRK 264
Query: 306 LEDAFSRYGFGIEVRKLESRAKAKEAAEGGAVIANGIAGGKYKELVDVMKLRESSGKIFD 365
L G G EVR L + K++A+G A+IAN IAGG+Y+E+VD M++ E+ G + D
Sbjct: 265 LR------GEGKEVRLLGGFGRGKQSAQGAAIIANAIAGGEYREIVDYMRIFEAKGTLLD 318
Query: 366 WV 367
++
Sbjct: 319 YI 320
>gb|AAK40557.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 302
Score = 69.9 bits (168), Expect = 5e-11
Identities = 62/214 (28%), Positives = 102/214 (46%), Gaps = 30/214 (14%)
Query: 5 IGIDSGTKSMDIFGFDDESGEIIVDVAVDRNEVTKNPRIIIDILREVQREHGKIDAIVGP 64
+GID G+++ F F DE G +I + + V K+ + ++ + + A+ P
Sbjct: 10 VGIDPGSETY-AFAFVDELGNLIKYFEICTDLVEKSSIFLAKLIADYRPM-----AVALP 63
Query: 65 SGYGIPLKPAREATDEEIALATFITKSDVERRLKIVGLRELMVLMREAEDLNIYFT-PGV 123
SG+G+P R + EI + T ++ L LR+ ++ ++ FT P V
Sbjct: 64 SGHGLPFYNIRNINNREIFILT------LKDPLSHGPLRDFLLASKQYLSFYNSFTIPSV 117
Query: 124 IHLPTVPEWRKANRIDLGTSDKIFTVALSILRHAEKEGVPYEKV-NLIAVEIGFAYTSAM 182
I L ++P RK N ID GT+DK+ + + Y K+ N I VE+G +T+ +
Sbjct: 118 IELNSLPNDRKVNVIDKGTADKVASTFFYRV---------YLKLDNFILVEMGRRFTAIV 168
Query: 183 AVKGGQIVDGMAGTAGFTGYLGMGFMDSELAYAL 216
V G+IVDG GT + +D E+AY L
Sbjct: 169 IVINGKIVDGYGGTY-------LSGLDGEIAYLL 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137036380
Number of Sequences: 2977
Number of extensions: 5742960
Number of successful extensions: 15228
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15214
Number of HSP's gapped (non-prelim): 6
length of query: 383
length of database: 189,106,746
effective HSP length: 58
effective length of query: 325
effective length of database: 154,394,500
effective search space: 50178212500
effective search space used: 50178212500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)