BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0143 (iorB-2) DE:indolepyruvate ferredoxin oxidoreductase,
subunit beta (iorB-2)
(194 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75210 indolepyruvate ferredoxin oxidoreductase, chain beta... 387 e-107
pir||F71246 probable indolepyruvate ferredoxin oxidoreductase be... 357 5e-98
sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 147 1e-34
pir||F75038 indolepyruvate ferredoxin oxidoreductase, chain beta... 143 2e-33
sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 124 6e-28
gi|11499612 indolepyruvate ferredoxin oxidoreductase, subunit be... 120 1e-26
sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB ... 106 1e-22
emb|CAC12142.1| (AL445066) probable indolepyruvate ferredoxin ox... 94 1e-18
gb|AAK42251.1| Indolepyruvate ferredoxin oxidoreductase beta sub... 82 6e-15
>pir||F75210 indolepyruvate ferredoxin oxidoreductase, chain beta (iorb-2)
PAB0143 - Pyrococcus abyssi (strain Orsay)
>gi|5457642|emb|CAB49133.1| (AJ248283) indolepyruvate
ferredoxin oxidoreductase, subunit beta (iorB-2)
[Pyrococcus abyssi]
Length = 194
Score = 387 bits (983), Expect = e-107
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MEFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYS 60
MEFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYS
Sbjct: 1 MEFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYS 60
Query: 61 PLIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEA 120
PLIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEA
Sbjct: 61 PLIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEA 120
Query: 121 ISRICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLWEM 180
ISRICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLWEM
Sbjct: 121 ISRICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLWEM 180
Query: 181 NFRAFERGVELASL 194
NFRAFERGVELASL
Sbjct: 181 NFRAFERGVELASL 194
>pir||F71246 probable indolepyruvate ferredoxin oxidoreductase beta subunit -
Pyrococcus horikoshii >gi|3256618|dbj|BAA29301.1|
(AP000001) 196aa long hypothetical indolepyruvate
ferredoxin oxidoreductase beta subunit [Pyrococcus
horikoshii]
Length = 196
Score = 357 bits (907), Expect = 5e-98
Identities = 175/194 (90%), Positives = 189/194 (97%)
Query: 1 MEFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYS 60
+EFNLIIAGVGGQGGLTLSRIIGNAAM+EGYRVRIGETLGMSQRYGSVLSYLRFG+E+YS
Sbjct: 3 LEFNLIIAGVGGQGGLTLSRIIGNAAMIEGYRVRIGETLGMSQRYGSVLSYLRFGEEVYS 62
Query: 61 PLIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEA 120
PLIEEGKA+LMLALEPVEALRNARFL R+SYAIINAYPIHTATTLVGKERYP L+EIKEA
Sbjct: 63 PLIEEGKADLMLALEPVEALRNARFLSRKSYAIINAYPIHTATTLVGKERYPDLEEIKEA 122
Query: 121 ISRICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLWEM 180
I +IC V+MRNFQ EADKINPRTLGVLMTG+AW+KGLLPLKKES+IEGIKLTLREKLW++
Sbjct: 123 IGKICRVEMRNFQEEADKINPRTLGVLMTGFAWRKGLLPLKKESIIEGIKLTLREKLWDI 182
Query: 181 NFRAFERGVELASL 194
NFRAFERGVELASL
Sbjct: 183 NFRAFERGVELASL 196
>sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430384|pir||E71124 probable indolepyruvate
ferredoxin oxidoreductase beta subunit - Pyrococcus
horikoshii >gi|3257172|dbj|BAA29855.1| (AP000003) 202aa
long hypothetical indolepyruvate ferredoxin
oxidoreductase beta subunit [Pyrococcus horikoshii]
Length = 202
Score = 147 bits (367), Expect = 1e-34
Identities = 79/194 (40%), Positives = 117/194 (59%), Gaps = 3/194 (1%)
Query: 2 EFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSP 61
E+N++I GVGGQG LT + ++G AA+ GY+VR+GE GMSQR+GSV++Y+RFGD++Y
Sbjct: 3 EYNIVITGVGGQGILTAANLLGWAALKAGYKVRVGEVHGMSQRFGSVIAYVRFGDDVYGA 62
Query: 62 LIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEAI 121
++ EGKA+++L+ EPVEALR +L + NA PI +G YP L+EIK +
Sbjct: 63 MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLATYPSLEEIKRIV 122
Query: 122 SRICNVDMRNFQGEADKI---NPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLW 178
N F E I N T V++ G + PL E + E I+L++ K
Sbjct: 123 EEEFNGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRLSVPPKAV 182
Query: 179 EMNFRAFERGVELA 192
++N +AF+ GV+ A
Sbjct: 183 DVNMKAFDLGVKAA 196
>pir||F75038 indolepyruvate ferredoxin oxidoreductase, chain beta (iorb-1)
PAB0857 - Pyrococcus abyssi (strain Orsay)
>gi|5458716|emb|CAB50203.1| (AJ248287) indolepyruvate
ferredoxin oxidoreductase, subunit beta (iorB-1)
[Pyrococcus abyssi]
Length = 202
Score = 143 bits (356), Expect = 2e-33
Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Query: 2 EFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSP 61
E+N++I GVGGQG LT + ++G AA+ GY+VR+GE GMSQR+GSV++Y+RFG+++Y
Sbjct: 3 EYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGA 62
Query: 62 LIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEAI 121
++ EGKA+++L+ EPVEALR +L + NA PI +G YP ++EI++ +
Sbjct: 63 MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLASYPSMEEIRKIV 122
Query: 122 SRICNVDMRNFQGEADKI---NPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLW 178
F E I N T V++ G + PL E + E I++++ K
Sbjct: 123 EEDFGGKFLAFDAEKLAIEAGNVITTNVVLIGALTQTPGFPLSAEHVKEVIRISVPPKAV 182
Query: 179 EMNFRAFERGVELA 192
++N RAFE GV+ A
Sbjct: 183 DVNMRAFELGVKAA 196
>sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2209071|dbj|BAA20529.1| (D86221) indolepyruvate
ferredoxin oxidoreductase beta subunit [Pyrococcus sp.]
Length = 226
Score = 124 bits (309), Expect = 6e-28
Identities = 57/120 (47%), Positives = 85/120 (70%)
Query: 2 EFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSP 61
E+N++I GVGGQG LT + ++G AA+ GY+VR+GE GMSQR+GSV++Y+RFG+++Y
Sbjct: 3 EYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVYGA 62
Query: 62 LIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEAI 121
++ EGKA+++L+ EPVEALR +L + NA PI +G YP LDE+K+ +
Sbjct: 63 MVPEGKADVILSFEPVEALRYINYLKKGGLVFTNARPIPPVQVSMGLATYPTLDEMKKIV 122
>gi|11499612 indolepyruvate ferredoxin oxidoreductase, subunit beta (iorB)
[Archaeoglobus fulgidus]
>gi|6685557|sp|O28249|IORB_ARCFU INDOLEPYRUVATE
OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430382|pir||E69503 indolepyruvate ferredoxin
oxidoreductase, subunit beta (iorB) homolog -
Archaeoglobus fulgidus >gi|2648506|gb|AAB89225.1|
(AE000963) indolepyruvate ferredoxin oxidoreductase,
subunit beta (iorB) [Archaeoglobus fulgidus]
Length = 201
Score = 120 bits (298), Expect = 1e-26
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 1 MEFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYS 60
M N+++ GVGGQG LT S II AAM G V ET GM+QR GSV ++R GD + +
Sbjct: 1 MRLNIVVVGVGGQGALTTSGIIARAAMRAGLNVVTAETHGMAQRGGSVEVHVRIGD-VRA 59
Query: 61 PLIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEI--- 117
PLI EG A++M+ALEP EALR A+FL + + I+N I + G +YP LDEI
Sbjct: 60 PLIPEGGADVMIALEPAEALRYAKFLNKNTLVILNTRKIIPPSVTAGTAKYPELDEIIGE 119
Query: 118 -KEAISRICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREK 176
++ R+ V+ +A + V++ G + +P E + E I+ T++ K
Sbjct: 120 LRKVTPRVIPVNASEIAEKAGSV--LATNVVVVGMLFGYYSMPFGIEHVEEAIRETMKSK 177
Query: 177 LWEMNFRAFERGVELA 192
+ ++N +A + G A
Sbjct: 178 IVDLNLKALKMGYNQA 193
>sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|7430381|pir||H69114 indolepyruvate oxidoreductase,
beta subunit - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622989|gb|AAB86319.1| (AE000938)
indolepyruvate oxidoreductase, beta subunit
[Methanobacterium thermoautotrophicum]
Length = 196
Score = 106 bits (263), Expect = 1e-22
Identities = 70/196 (35%), Positives = 104/196 (52%), Gaps = 5/196 (2%)
Query: 1 MEFNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYS 60
M +N+ + GVGGQG + S IIG AAM + V + E GM+QR GSV + +R G E++
Sbjct: 1 MNYNIYVCGVGGQGIIKTSVIIGEAAMKKDINVVMSEIHGMAQRGGSVSTEIRIG-EVHG 59
Query: 61 PLIEEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEA 120
+I +G+A+L+LA EP+EA+R + ES I+N I + YP LDEI
Sbjct: 60 SIIPDGEADLVLAFEPLEAIRALPKMSEESEVILNTSVIPPFNLMRSPHPYPPLDEIMST 119
Query: 121 ISRICNVDMRNFQGEADKINP---RTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKL 177
+ +R F E + +L ++M G A PL+ ESLI ++ L +L
Sbjct: 120 LEERAG-SVRGFNAEEIALKAGHILSLNMVMLGAAAATPGFPLESESLISSMRDNLPSRL 178
Query: 178 WEMNFRAFERGVELAS 193
++N RAF G A+
Sbjct: 179 IDVNLRAFRDGFGAAA 194
>emb|CAC12142.1| (AL445066) probable indolepyruvate ferredoxin oxidoreductase beta
subunit [Thermoplasma acidophilum]
Length = 202
Score = 93.6 bits (229), Expect = 1e-18
Identities = 63/187 (33%), Positives = 101/187 (53%), Gaps = 14/187 (7%)
Query: 4 NLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSPLI 63
N+++AGVGGQG +T+ ++IGNAA+ G +V + ET G+SQR GSV ++R G+ + +PLI
Sbjct: 9 NILLAGVGGQGIITMGKMIGNAAVNSGIKVFVAETHGLSQRGGSVQVHIRIGN-VMAPLI 67
Query: 64 EEGKANLMLALEPVEALRNARFLGRESYAIINAYPIHTATTLVGKERYPGLDEIKEAIS- 122
E+GKA+ ++ LE EALRN + G+ + I+N T +V K P L+ + + +
Sbjct: 68 EKGKADYIVGLEASEALRNLSYAGKGTVFILNK---QTIKPVVPKVNTPDLEIVLQRLHG 124
Query: 123 -RICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLPLKKESLIEGIKLTLREKLWEMN 181
R VD +A NP+ ++ G+ G ++ E +T + N
Sbjct: 125 FRYYLVDGERIARDAG--NPKGSNAVLIGFMVGMGFFGEMQKKAFEMAMIT------DPN 176
Query: 182 FRAFERG 188
R F G
Sbjct: 177 VRCFNAG 183
>gb|AAK42251.1| Indolepyruvate ferredoxin oxidoreductase beta subunit (iorB)
[Sulfolobus solfataricus]
Length = 194
Score = 81.5 bits (198), Expect = 6e-15
Identities = 59/188 (31%), Positives = 98/188 (51%), Gaps = 18/188 (9%)
Query: 4 NLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSPLI 63
N++IAGVGGQG +T +II A +V I ET G++QR G V ++R GD + SPLI
Sbjct: 5 NILIAGVGGQGIITAGKIIAEAGNYSNTKVLIAETHGLAQRGGGVNVHVRIGD-VNSPLI 63
Query: 64 EEGKANLMLALEPVEALRNARFLGRE-SYAIINAYPIHTATTLVGKERYPGLDEIKEAIS 122
GKA+ ++ LE +E LRN + R+ + ++N Y + ++ K + L EI + +
Sbjct: 64 PLGKADYLVGLEAIEVLRNLNYASRKHTTIVVNNYVVR---PVLPKVKLLTLQEIFDKLK 120
Query: 123 --RICNVDMRNFQGEADKINPRTLGVLMTGYAWKKGLLP--LKKESLIEGIKLTLREKLW 178
++ +D +A I + M G+ + G + +ES I+ +K +
Sbjct: 121 GCKVYVIDANQIAIKAGNI--KAANAAMLGFLYSLGAFEGLINEESFIKALK-------Y 171
Query: 179 EMNFRAFE 186
E N +AF+
Sbjct: 172 ESNIKAFK 179
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68979758
Number of Sequences: 2977
Number of extensions: 2684619
Number of successful extensions: 6692
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6680
Number of HSP's gapped (non-prelim): 9
length of query: 194
length of database: 189,106,746
effective HSP length: 54
effective length of query: 140
effective length of database: 156,788,448
effective search space: 21950382720
effective search space used: 21950382720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)