BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0149 (PAB0149) DE:Hypothetical protein
         (221 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75211 hypothetical protein PAB0149 - Pyrococcus abyssi (st...   419  e-116
pir||F71247 hypothetical protein PH0237 - Pyrococcus horikoshii ...   199  2e-50

>pir||F75211 hypothetical protein PAB0149 - Pyrococcus abyssi (strain Orsay)
           >gi|5457650|emb|CAB49141.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 221
           
 Score =  419 bits (1066), Expect = e-116
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MMLDDVIKAIELERRKFEERANILEEVIDKSSSSISSKYEELLRKRRASFFVYSILMIGL 60
           MMLDDVIKAIELERRKFEERANILEEVIDKSSSSISSKYEELLRKRRASFFVYSILMIGL
Sbjct: 1   MMLDDVIKAIELERRKFEERANILEEVIDKSSSSISSKYEELLRKRRASFFVYSILMIGL 60

Query: 61  LVVEIIVLLIIREKFNVGGIKISLILFFLLAILAFTLLGLIASRSESEDYSVEDKITLYR 120
           LVVEIIVLLIIREKFNVGGIKISLILFFLLAILAFTLLGLIASRSESEDYSVEDKITLYR
Sbjct: 61  LVVEIIVLLIIREKFNVGGIKISLILFFLLAILAFTLLGLIASRSESEDYSVEDKITLYR 120

Query: 121 KLAKFYSKLKEALERKDYEKLRELADEVLSDPLLGKAIEIGNIGRPEAVAYALYLYLNRD 180
           KLAKFYSKLKEALERKDYEKLRELADEVLSDPLLGKAIEIGNIGRPEAVAYALYLYLNRD
Sbjct: 121 KLAKFYSKLKEALERKDYEKLRELADEVLSDPLLGKAIEIGNIGRPEAVAYALYLYLNRD 180

Query: 181 KVEKFEVEEAINLVEGPMKLLLKVALGEEDEDRGNLKGRNE 221
           KVEKFEVEEAINLVEGPMKLLLKVALGEEDEDRGNLKGRNE
Sbjct: 181 KVEKFEVEEAINLVEGPMKLLLKVALGEEDEDRGNLKGRNE 221


>pir||F71247 hypothetical protein PH0237 - Pyrococcus horikoshii
           >gi|3256626|dbj|BAA29309.1| (AP000001) 230aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 230
           
 Score =  199 bits (502), Expect = 2e-50
 Identities = 105/222 (47%), Positives = 154/222 (69%), Gaps = 3/222 (1%)

Query: 1   MMLDDVIKAIELERRKFEERANILEEVIDKSSSSISSKYEELLRKRRASFFVYSILMIGL 60
           M  ++++KAI+LE +KFEERAN+LEEV  +  SS+SSKYE++L+K+      Y I     
Sbjct: 5   MTSENILKAIDLEIKKFEERANVLEEVALQGESSLSSKYEDMLKKKSRYSIYYLIATAVF 64

Query: 61  LVVEIIVLLIIREKFNVGGIKISLILFFLLAILAFTLLGLIASRSESEDYSVEDKITLYR 120
           L  EI++L++IR K+ +G +  S IL  +  IL F L  L +S    ED S+++KI  YR
Sbjct: 65  LFFEILLLIVIRYKYGLGTLNYS-ILIVVTVILVFFLFMLTSSPKVEED-SIQEKIVFYR 122

Query: 121 KLA-KFYSKLKEALERKDYEKLRELADEVLSDPLLGKAIEIGNIGRPEAVAYALYLYLNR 179
            +A KFY ++K  LE+ D E +R +AD++L DPL  +A+E  N+G P+ VAYALYLYL+R
Sbjct: 123 LIANKFYKRIKGGLEKGDEELIRAVADDILKDPLFSRALEHANVGDPKVVAYALYLYLHR 182

Query: 180 DKVEKFEVEEAINLVEGPMKLLLKVALGEEDEDRGNLKGRNE 221
           DKV+  EV+  INLV GP+++LL+  LGE+ E+RG++KG +E
Sbjct: 183 DKVDNLEVQNTINLVRGPIRMLLESILGEDHENRGSVKGVSE 224


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.366 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69745442
Number of Sequences: 2977
Number of extensions: 2617036
Number of successful extensions: 12114
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12110
Number of HSP's gapped (non-prelim): 2
length of query: 221
length of database: 189,106,746
effective HSP length: 60
effective length of query: 161
effective length of database: 153,197,526
effective search space: 24664801686
effective search space used: 24664801686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)