BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0150 (PAB0150) DE:Hypothetical protein
         (269 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75211 hypothetical protein PAB0150 - Pyrococcus abyssi (st...   514  e-145
pir||G71247 hypothetical protein PH0238 - Pyrococcus horikoshii ...   308  5e-83

>pir||G75211 hypothetical protein PAB0150 - Pyrococcus abyssi (strain Orsay)
           >gi|5457651|emb|CAB49142.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 269
           
 Score =  514 bits (1310), Expect = e-145
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MRRMRIEVISKDAMNELSRVLSKAGIMNRTREELDWVAEHKISLRRKLKELKSIKIGAVK 60
           MRRMRIEVISKDAMNELSRVLSKAGIMNRTREELDWVAEHKISLRRKLKELKSIKIGAVK
Sbjct: 1   MRRMRIEVISKDAMNELSRVLSKAGIMNRTREELDWVAEHKISLRRKLKELKSIKIGAVK 60

Query: 61  DRASELESTLRFLIEKLKDGEITLDDIGDDPELIEALESLERGGYLKVEDNSIRLQKDVD 120
           DRASELESTLRFLIEKLKDGEITLDDIGDDPELIEALESLERGGYLKVEDNSIRLQKDVD
Sbjct: 61  DRASELESTLRFLIEKLKDGEITLDDIGDDPELIEALESLERGGYLKVEDNSIRLQKDVD 120

Query: 121 SVEDIEVEVLIPVEEVADYLEELESLGAKVITEVFFVKRYYVEVMEVELEAIQKALEIAE 180
           SVEDIEVEVLIPVEEVADYLEELESLGAKVITEVFFVKRYYVEVMEVELEAIQKALEIAE
Sbjct: 121 SVEDIEVEVLIPVEEVADYLEELESLGAKVITEVFFVKRYYVEVMEVELEAIQKALEIAE 180

Query: 181 EYADEEDILESSIAGISKSLLSKVILELVKDIRRKNELVEMLMNMEPIELEGDKGSLRIY 240
           EYADEEDILESSIAGISKSLLSKVILELVKDIRRKNELVEMLMNMEPIELEGDKGSLRIY
Sbjct: 181 EYADEEDILESSIAGISKSLLSKVILELVKDIRRKNELVEMLMNMEPIELEGDKGSLRIY 240

Query: 241 FEEDVLEEILKELQTLGYLKVKGNRIWFY 269
           FEEDVLEEILKELQTLGYLKVKGNRIWFY
Sbjct: 241 FEEDVLEEILKELQTLGYLKVKGNRIWFY 269


>pir||G71247 hypothetical protein PH0238 - Pyrococcus horikoshii
           >gi|3256627|dbj|BAA29310.1| (AP000001) 269aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 269
           
 Score =  308 bits (780), Expect = 5e-83
 Identities = 154/270 (57%), Positives = 214/270 (79%), Gaps = 2/270 (0%)

Query: 1   MRRMRIEVISKDAMNELSRVLSKAGIMNRTREELDWVAEHKISLRRKLKELKSIKIGAVK 60
           MR MRIEV SK+ ++ELS+ LSKAGIMN+ +EELDW   H ISLR+K  ELK++KI ++ 
Sbjct: 1   MRIMRIEVPSKEYLSELSKRLSKAGIMNKPKEELDWEINHMISLRKKFNELKNLKIESIL 60

Query: 61  DRASELESTLRFLIEKLKDGEITLDDIGDDPELIEALESLERGGYLKV-EDNSIRLQKDV 119
           +R S+ E+    ++ KL+  E+ L++I D+P +IE LE+L     ++  +D  I+L +DV
Sbjct: 61  ERLSQFENVYSEIMGKLRTRELNLEEISDEPLVIEVLEALVENNCVEFSDDGKIKLLRDV 120

Query: 120 DSVEDIEVEVLIPVEEVADYLEELESLGAKVITEVFFVKRYYVEVMEVELEAIQKALEIA 179
             +E++E+E+ +P +EV + LE LE +G K++TEV  +KRYYVE+MEVELEAIQ+AL+IA
Sbjct: 121 P-LEELEIELSVPADEVLEDLENLERVGGKLVTEVKLLKRYYVEIMEVELEAIQRALDIA 179

Query: 180 EEYADEEDILESSIAGISKSLLSKVILELVKDIRRKNELVEMLMNMEPIELEGDKGSLRI 239
           EEY DEE +LES+IAGI+KS LS++IL LVKDIR+K+EL+++L++ EPIE+ G+ G LRI
Sbjct: 180 EEYVDEEALLESAIAGIAKSALSQLILSLVKDIRKKDELIDLLLSSEPIEIGGEHGDLRI 239

Query: 240 YFEEDVLEEILKELQTLGYLKVKGNRIWFY 269
           YFEE+ LE++LKELQTLGYLKVKGNRIWFY
Sbjct: 240 YFEEEALEDLLKELQTLGYLKVKGNRIWFY 269


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.137    0.354 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85514692
Number of Sequences: 2977
Number of extensions: 3374401
Number of successful extensions: 14267
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14264
Number of HSP's gapped (non-prelim): 2
length of query: 269
length of database: 189,106,746
effective HSP length: 62
effective length of query: 207
effective length of database: 152,000,552
effective search space: 31464114264
effective search space used: 31464114264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 164 (68.3 bits)