BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0154 (tldD) DE:TLDD PROTEIN
(452 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Ors... 908 0.0
pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii >gi|3256... 689 0.0
sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir... 350 2e-95
sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|... 321 1e-86
pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii 321 1e-86
pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (st... 290 2e-77
gi|11498263 conserved hypothetical protein [Archaeoglobus fulgid... 290 2e-77
pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii ... 281 1e-74
pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (st... 260 3e-68
pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii ... 254 2e-66
pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (str... 252 6e-66
gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, puta... 238 1e-61
emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfat... 238 1e-61
sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD p... 231 1e-59
pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (gr... 223 3e-57
sp|P73754|Y863_SYNY3 HYPOTHETICAL 50.4 KD PROTEIN SLR0863 >gi|74... 220 2e-56
gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum] 219 5e-56
pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07... 217 2e-55
pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa ... 215 8e-55
sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13... 215 8e-55
pir||D72342 tldD protein - Thermotoga maritima (strain MSB8) >gi... 209 5e-53
pir||D83086 conserved hypothetical protein PA4474 [imported] - P... 205 9e-52
sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG 199 7e-50
pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria ... 191 1e-47
pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningit... 191 1e-47
emb|CAC11942.1| (AL445065) conserved hypothetical protein [Therm... 185 9e-46
gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfat... 182 6e-45
pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment) 173 5e-42
dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity... 158 1e-37
sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|74... 153 4e-36
pir||E70461 pmbA protein - Aquifex aeolicus >gi|2984159|gb|AAC07... 144 2e-33
pir||B83330 hypothetical protein PA2529 [imported] - Pseudomonas... 136 4e-31
pir||E72342 pmbA-related protein - Thermotoga maritima (strain M... 133 4e-30
pir||D70703 tldD homolog Rv2315c - Mycobacterium tuberculosis (s... 125 7e-28
pir||T36780 hypothetical protein SCI28.10 - Streptomyces coelico... 116 6e-25
gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis] 113 4e-24
pir||B71249 hypothetical protein PH0249 - Pyrococcus horikoshii ... 111 1e-23
pir||B69009 conserved hypothetical protein MTH1070 - Methanobact... 110 3e-23
sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||... 102 6e-21
pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus aby... 100 3e-20
pir||S77207 hypothetical protein slr1435 - Synechocystis sp. (st... 99 9e-20
pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (gr... 97 5e-19
sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C6418... 96 6e-19
pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aerugin... 94 3e-18
sp|P57191|PMBA_BUCAI PMBA PROTEIN HOMOLOG >gi|10038774|dbj|BAB12... 93 7e-18
pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii ... 89 8e-17
pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (st... 88 2e-16
pir||D81151 pmbA protein NMB0839 [imported] - Neisseria meningit... 84 3e-15
pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii ... 83 5e-15
pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria ... 81 3e-14
pir||S75708 hypothetical protein sll0887 - Synechocystis sp. (st... 80 4e-14
dbj|BAB05756.1| (AP001514) unknown conserved protein in others [... 80 7e-14
pir||B75180 antibiotic/peptide maturation related protein PAB195... 77 4e-13
pir||I64173 hypothetical protein HI1653 - Haemophilus influenzae... 76 6e-13
sp|Q57684|Y231_METJA HYPOTHETICAL PROTEIN MJ0231 >gi|2128001|pir... 76 1e-12
emb|CAC11943.1| (AL445065) conserved hypothetical protein [Therm... 75 2e-12
gi|11498264 antibiotic maturation protein (pmbA) [Archaeoglobus ... 75 2e-12
gb|AAF65318.1|AF234655_1 (AF234655) LmbIH [Streptomyces lincolne... 69 8e-11
>pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Orsay)
>gi|5457661|emb|CAB49152.1| (AJ248283) TLDD PROTEIN
[Pyrococcus abyssi]
Length = 452
Score = 908 bits (2320), Expect = 0.0
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MIDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGWGF 60
MIDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGWGF
Sbjct: 1 MIDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGWGF 60
Query: 61 ASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGL 120
ASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGL
Sbjct: 61 ASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGL 120
Query: 121 EVEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYW 180
EVEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYW
Sbjct: 121 EVEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYW 180
Query: 181 KSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALG 240
KSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALG
Sbjct: 181 KSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALG 240
Query: 241 HAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKD 300
HAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKD
Sbjct: 241 HAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKD 300
Query: 301 GVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGV 360
GVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGV
Sbjct: 301 GVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGV 360
Query: 361 YMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
YMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK
Sbjct: 361 YMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
Query: 421 IEFPGFCGKGQWVPVDDGGPHVLVKAIVGGRE 452
IEFPGFCGKGQWVPVDDGGPHVLVKAIVGGRE
Sbjct: 421 IEFPGFCGKGQWVPVDDGGPHVLVKAIVGGRE 452
>pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii
>gi|3256635|dbj|BAA29318.1| (AP000001) 504aa long
hypothetical tldd protein [Pyrococcus horikoshii]
Length = 504
Score = 689 bits (1759), Expect = 0.0
Identities = 321/454 (70%), Positives = 387/454 (84%), Gaps = 2/454 (0%)
Query: 1 MIDELRNLIEKYSN--EVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGW 58
MIDE+ ++EKYS+ E+KFMDIR E+ YTE T+ENGKVE +E+N E G+GVRVLINGW
Sbjct: 51 MIDEILKVLEKYSSSSEIKFMDIRMESIEYTELTIENGKVENLENNGERGVGVRVLINGW 110
Query: 59 GFASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKL 118
GFASTNDL+K+E+ +K AIK+AKVS +Y +P+E +KQ D+DLEEK KL
Sbjct: 111 GFASTNDLTKIEEIVKTAIKMAKVSRISTSVYTRDPIEDNVEVKQGIKLKDIDLEEKVKL 170
Query: 119 GLEVEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQT 178
G+EV M++R+ IKT +FSYSD + +K+YL+SEGS+IE+ VPR+Y S+S+VA+ + MQT
Sbjct: 171 GVEVNNMLKRENIKTRKFSYSDIIVKKLYLSSEGSIIESTVPRVYLSISSVAKFSGKMQT 230
Query: 179 YWKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEA 238
YWKSFGGT GWE+VE +DF +WANF+S KA+SLLSARSPPSGEM +IMDPELAGVFIHEA
Sbjct: 231 YWKSFGGTGGWEIVEKIDFEHWANFVSKKAVSLLSARSPPSGEMQVIMDPELAGVFIHEA 290
Query: 239 LGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEII 298
LGHA EAD+V+Q ESIL+GM+GK+I EELTV+DDPTLPGKFGSY+YDDEG+PGKRVEII
Sbjct: 291 LGHASEADAVKQEESILAGMLGKRIAVEELTVVDDPTLPGKFGSYIYDDEGIPGKRVEII 350
Query: 299 KDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKF 358
+DGVL+NYLNDRETS LNL PNGHGRAQSY+HVPLVRMSNTYI PG+W EE+ +EVKF
Sbjct: 351 RDGVLVNYLNDRETSSLLNLEPNGHGRAQSYSHVPLVRMSNTYIEPGDWRFEEILDEVKF 410
Query: 359 GVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
GVYMIGDKGGQVD+A+G+FMF AKEGY+++ GEIK +RDV +SGNIL L+EIKA+G D
Sbjct: 411 GVYMIGDKGGQVDVASGNFMFAAKEGYLVENGEIKGHLRDVALSGNILSALREIKAIGND 470
Query: 419 LKIEFPGFCGKGQWVPVDDGGPHVLVKAIVGGRE 452
LKIEFPGFCGKGQWVPVDDGGPHVL KAIVGG E
Sbjct: 471 LKIEFPGFCGKGQWVPVDDGGPHVLTKAIVGGLE 504
>sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir||C69214 zinc
metalloproteinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621948|gb|AAB85354.1| (AE000862)
zinc metalloproteinase [Methanobacterium
thermoautotrophicum]
Length = 454
Score = 350 bits (889), Expect = 2e-95
Identities = 193/451 (42%), Positives = 277/451 (60%), Gaps = 6/451 (1%)
Query: 3 DELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFA 61
D L +++ + V++ DIR + + +++GK++ V+S G +RVL NG WGFA
Sbjct: 6 DYLGSILMDIEDRVEYADIRAGTSRTSSILMKDGKLQEVKSGRASGFRIRVLRNGSWGFA 65
Query: 62 STNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLE 121
T++ S+L + AIK+ +V + G P K +++ + DV EK +L +
Sbjct: 66 FTDEPSRLGEMALKAIKMTGSLRGDVQVGSGAPSVDKTMVRSSRPPSDVPAAEKRELVSD 125
Query: 122 VEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWK 181
D + ++ SY D + +LNSEGS+IE R+ L+AVA +Q K
Sbjct: 126 AHHAASVDGVVSTTVSYVDMESSSAFLNSEGSLIEMAETRVALFLNAVASDGSGIQFGHK 185
Query: 182 SFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGH 241
S GGT G+E++E D KA+ LL A PPSG I+ DPEL GVFIHEALGH
Sbjct: 186 SCGGTGGFEILEREDIEELGRRTGEKAVRLLKASPPPSGRFDIVTDPELTGVFIHEALGH 245
Query: 242 AVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDG 301
A EAD + QG+SIL G +G+KI SE +T+IDDPT+ G FGSY YD EG+ ++++G
Sbjct: 246 AAEADLILQGDSILEGKLGEKIASEGVTIIDDPTIDG-FGSYSYDAEGVRAAETVLVENG 304
Query: 302 VLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVY 361
VL + LN RET+ L L P+G+ R+ + P+VRMSNTY+ PG+ + +E+ E+++ GVY
Sbjct: 305 VLTSLLNSRETAFKLGLEPSGNARS-AIGDQPIVRMSNTYLKPGDLSFDELIEDIRNGVY 363
Query: 362 MIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKI 421
+ G +GGQVD G F F A E + I++GEI E V+DV +SGN+L+TLK + VG D ++
Sbjct: 364 LRGSRGGQVDTGKGIFQFNAAESFRIQDGEIAEPVKDVSLSGNVLETLKNVDGVGSDFRL 423
Query: 422 EFPGFCGK-GQWVPVDDGGPHVLVK-AIVGG 450
GFCGK GQ VPV DGGPHV ++ A+VGG
Sbjct: 424 GI-GFCGKSGQSVPVGDGGPHVRIRNAMVGG 453
>sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|AAB99001.1| (U67542)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 451
Score = 321 bits (814), Expect = 1e-86
Identities = 189/451 (41%), Positives = 277/451 (60%), Gaps = 18/451 (3%)
Query: 9 IEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLI-NGWGFASTNDLS 67
IEK + DIR T+++GK+E + S G+ VRVL NGWGF ++N +S
Sbjct: 7 IEKLLEVGDYADIRINFGESNTITLKDGKIEEISSGFGNGVAVRVLYKNGWGFVTSNIVS 66
Query: 68 K--LEDTIKMAIKLAKVSN--AEVPLYVGNPVEGKAIIKQKKDF-----LDVDLEEKTKL 118
+ +E I A K+AK+SN +E + + + KAII K DVD+EEK ++
Sbjct: 67 EEEIEKLINKAYKMAKISNEYSEKEIILK---DYKAIIDNYKMIGKINPTDVDIEEKKEI 123
Query: 119 GLEVEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQT 178
++ K + +KIK+ SYSD ++I++ SEGS IE + R ++ VA+ +Q
Sbjct: 124 IIDTYKNMTDEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMNCVAKENGNLQ- 182
Query: 179 YWKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEA 238
Y G G+E ++ N A ++AL LL A+ P G+ +I+DPELAGVFIHEA
Sbjct: 183 YGAERTGGFGFEKIKDNYLNL-ALEAKNRALRLLKAKPCPKGKFKVILDPELAGVFIHEA 241
Query: 239 LGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEII 298
+GHA EAD V Q +S+ +G+++GSE +TVIDD T+ G FGSY YDDEG+ GK+ II
Sbjct: 242 VGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEGVEGKKTVII 301
Query: 299 KDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKF 358
++G+L YL+ RET+ ++ G+GRA+ + P+VRMSNT+I PG+W+ EE+ E+ K
Sbjct: 302 ENGILKTYLHSRETAGRMDAELTGNGRAEG-LNKPIVRMSNTFIKPGDWSFEELLEDTKE 360
Query: 359 GVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
G+++ G +GGQVD G F F A E Y+I+ GE+ + ++D G+SG ILD L ++ AV +D
Sbjct: 361 GIFLKGSRGGQVDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDILFKVDAVTKD 420
Query: 419 LKIEFPGFCGK-GQWVPVDDGGPHVLVKAIV 448
++ G+CGK GQ VPV DGG V A V
Sbjct: 421 FELSV-GYCGKDGQSVPVGDGGGCVRTIATV 450
>pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii
Length = 451
Score = 321 bits (813), Expect = 1e-86
Identities = 189/449 (42%), Positives = 274/449 (60%), Gaps = 14/449 (3%)
Query: 9 IEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLI-NGWGFASTNDLS 67
IEK + DIR T+++GK+E + S G+ VRVL NGWGF ++N +S
Sbjct: 7 IEKLLEVGDYADIRINFGESNTITLKDGKIEEISSGFGNGVAVRVLYKNGWGFVTSNIVS 66
Query: 68 K--LEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDF-----LDVDLEEKTKLGL 120
+ +E I A K+AK+SN E + KAII K DVD+EEK ++ +
Sbjct: 67 EEEIEKLINKAYKMAKISN-EYSEKEXILKDYKAIIDNYKMIGKINPTDVDIEEKKEIII 125
Query: 121 EVEKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYW 180
+ K + +KIK+ SYSD ++I++ SEGS IE + R ++ VA+ +Q Y
Sbjct: 126 DTYKNMTDEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMNCVAKENGNLQ-YG 184
Query: 181 KSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALG 240
G G+E ++ N A ++AL LL A+ P G+ +I+DPELAGVFIHEA+G
Sbjct: 185 AERTGGFGFEKIKDNYLNL-ALEAKNRALRLLKAKPCPKGKFKVILDPELAGVFIHEAVG 243
Query: 241 HAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKD 300
HA EAD V Q +S+ +G+++GSE +TVIDD T+ G FGSY YDDEG+ GK+ II++
Sbjct: 244 HASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEGVEGKKTVIIEN 303
Query: 301 GVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGV 360
G+L YL+ RET+ ++ G+GRA+ + P+VRMSNT+I PG+W+ EE+ E+ K G+
Sbjct: 304 GILKTYLHSRETAGRMDAELTGNGRAEG-LNKPIVRMSNTFIKPGDWSFEELLEDTKEGI 362
Query: 361 YMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
++ G +GGQVD G F F A E Y+I+ GE+ + ++D G+SG ILD L ++ AV +D +
Sbjct: 363 FLKGSRGGQVDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDILFKVDAVTKDFE 422
Query: 421 IEFPGFCGK-GQWVPVDDGGPHVLVKAIV 448
+ G+CGK GQ VPV DGG V A V
Sbjct: 423 LSV-GYCGKDGQSVPVGDGGGCVRTIATV 450
>pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (strain Orsay)
>gi|5458032|emb|CAB49522.1| (AJ248284) TLDD RELATED
PROTEIN [Pyrococcus abyssi]
Length = 458
Score = 290 bits (735), Expect = 2e-77
Identities = 167/436 (38%), Positives = 253/436 (57%), Gaps = 13/436 (2%)
Query: 15 EVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSKLEDTI 73
+ +++++R+E+ T T+++G G+ +RVL NG WGF+ST+DLSKLE+ I
Sbjct: 19 KAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAI 78
Query: 74 KMAIKLAKVSNA----EVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRD 129
K A KLAK ++ ++ L PVE K K +VD+EEK K E+EK+++ D
Sbjct: 79 KEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKED 138
Query: 130 K-IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGT-V 187
+ +K+ Y D +KI L +EG+ IE ++ S+ + + S G
Sbjct: 139 ETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDY 198
Query: 188 GWELVESVDFNYWA-NFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEAD 246
GWEL+ + N + + K S L+ +P GE P++ P + G+ HEALGH EAD
Sbjct: 199 GWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEAD 258
Query: 247 SVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNY 306
S ++GK+I E +T+ + + G FG+ YDDEG+P K + II++G+L
Sbjct: 259 LTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEI 315
Query: 307 LNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDK 366
+ +RE + N+ PNGH RAQ Y + P++RM NT PG+W+ EEM E++KFG Y++ +
Sbjct: 316 MLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFR 375
Query: 367 GGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGF 426
GGQ + N +F G +EGY+I+ GEI E +RD I+G ++ LK+I AVG+D IE GF
Sbjct: 376 GGQAQL-NSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIE-TGF 433
Query: 427 CGKGQWVPVDDGGPHV 442
CGKGQ V GGPH+
Sbjct: 434 CGKGQIAFVSSGGPHM 449
>gi|11498263 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123065|sp|O29602|Y655_ARCFU HYPOTHETICAL PROTEIN
AF0655 >gi|7429834|pir||G69331 conserved hypothetical
protein AF0655 - Archaeoglobus fulgidus
>gi|2649963|gb|AAB90585.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 425
Score = 290 bits (735), Expect = 2e-77
Identities = 180/441 (40%), Positives = 264/441 (59%), Gaps = 23/441 (5%)
Query: 16 VKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTN--DLSKLEDT 72
++F DIR + +ENGK+E N+ G RVL NG WG N D L
Sbjct: 1 MRFWDIRRVENVSLNLQLENGKLEKPRYNKSTSKGFRVLKNGFWGIFEGNVADDEGLRQA 60
Query: 73 IKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIK 132
K A E+ +G+ ++ K+D D+ +EEK +L ++EK+IR D
Sbjct: 61 EKNAFTQGDGDIEEIA------TKGRYRMRVKRDPQDMSIEEKVELLKDLEKIIR-DVCV 113
Query: 133 TSRFSYSDFVTRKI--YLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWE 190
+++ Y F R++ Y +S GS +E V R S+ V + + Q K G+E
Sbjct: 114 STKLVY--FENRRVLQYRDSCGSEVEYEVLRTGVSIMGVGKGRSL-QFLSKRQMRVGGYE 170
Query: 191 LVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQ 250
+++ VD + I L++A +PPSGEM ++MD LAGVF+HEA GHAVEAD V Q
Sbjct: 171 VLDGVDEKAYE--IVEVLPKLVNALAPPSGEMSVVMDSSLAGVFVHEAFGHAVEADHVLQ 228
Query: 251 GESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDR 310
G ++L G + +K+ E +T+IDDPTLP +FG + +DDEG+ ++ I++DGVL ++L+ R
Sbjct: 229 GATVLKGRLNEKVADESVTIIDDPTLP-EFGFFPFDDEGVRAEKKVIVEDGVLKSFLHSR 287
Query: 311 ETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQV 370
ET+K L V G+ R+Q VP+VRMSNTYI ++ +E+ EE + GVY++G +GG+
Sbjct: 288 ETAKKLGGVA-GNARSQG-VDVPIVRMSNTYIDTHHYSFDELLEECRDGVYLVGSRGGET 345
Query: 371 DIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGFCGK- 429
+ A G F F A+ GY+IK GE+ E VRDV +SGN L+ L+ +K +GR+++ + PGFCGK
Sbjct: 346 NPATGYFHFNAQYGYLIKNGELAEMVRDVSLSGNTLEILRNVK-IGREIEFD-PGFCGKA 403
Query: 430 GQWVPVDDGGPHVLVKAIVGG 450
GQ VPV DG P VL +A VGG
Sbjct: 404 GQLVPVSDGSPPVLCRATVGG 424
>pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii
>gi|3257986|dbj|BAA30669.1| (AP000006) 458aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 458
Score = 281 bits (711), Expect = 1e-74
Identities = 161/436 (36%), Positives = 249/436 (56%), Gaps = 13/436 (2%)
Query: 15 EVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSKLEDTI 73
+ +++++R+E+ T +++G G+ +RVL+NG WGF+ST++L K+E+ I
Sbjct: 19 KAEYIELRYEDIKRTALNLKDGVFVNFTEKLNRGVAIRVLVNGAWGFSSTSELDKVEEAI 78
Query: 74 KMAIKLAKVSNA----EVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRD 129
K A KLAKV++ ++ L PVE K K +VD+EEK E+E +++ D
Sbjct: 79 KEAYKLAKVASETKKEKIKLAEIKPVEDFVKSKMKIKPREVDIEEKINHLKELENLLKED 138
Query: 130 K-IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGT-V 187
K +K+ Y D +KI L +EG+ IE ++ + + + + G
Sbjct: 139 KAVKSVNIRYEDGGGQKILLTNEGTKIEWDYNYLWQGVYVTGKEDGKLAMARDTIGAVDY 198
Query: 188 GWELVESVDFNYWA-NFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEAD 246
GWEL+ + N + I K S L +P GE P++ P + G+ HEALGH EAD
Sbjct: 199 GWELMTEKEPNEKVRDRILRKLHSQLKGITPKRGEFPVVAGPIIVGIIAHEALGHLAEAD 258
Query: 247 SVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNY 306
S ++GK+I E +T+ + + G FG+ YDDEG+P + + II++G+L
Sbjct: 259 LTMN--SPFKDLLGKQIAPEYVTM-SERHVEGGFGNDKYDDEGVPVRDIHIIENGILKEI 315
Query: 307 LNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDK 366
+ +RE + N+ PNGH RAQ Y + P++RM NT PG+W+ EEM E++KFG Y++ +
Sbjct: 316 MLNREYATKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFR 375
Query: 367 GGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGF 426
GGQ + N +F G +EGY+I+ GEI E +RD I+G ++ LK+I AVG+D IE GF
Sbjct: 376 GGQAQL-NSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKITAVGKDFGIEV-GF 433
Query: 427 CGKGQWVPVDDGGPHV 442
CGKGQ V GGPH+
Sbjct: 434 CGKGQTAFVSSGGPHM 449
>pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (strain Orsay)
>gi|5458677|emb|CAB50164.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 473
Score = 260 bits (657), Expect = 3e-68
Identities = 154/451 (34%), Positives = 258/451 (57%), Gaps = 22/451 (4%)
Query: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSK--LEDTIK 74
+ + RFE T +++NG +G++ + GIG+RVL++G GFASTN L+K + +T++
Sbjct: 19 YAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGFASTNILTKESIVETVQ 78
Query: 75 MAIKLAKVSNA--EVPLYVGNPVEGKAI--IKQKKDFLDVDLEEKTKLGLEVEKMIRRDK 130
A+KLAK ++ + P+ + +K KKDF DV EEK +L ++E+ +
Sbjct: 79 RAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEEKLELLKKIEEEVLSTN 138
Query: 131 IKTSR--FSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVA-RSADIMQTYWKSFGGTV 187
+K +YSD V KI++NSE +V+E+V+PR+ + V + Q + S +
Sbjct: 139 VKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYEEGQMEQAPFVSRAFSG 198
Query: 188 GWELVESVD-FNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEAD 246
G EL+E + + + + + + PP G++ +++ PE+AG+ +HE++GH E D
Sbjct: 199 GLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEVAGIAVHESVGHPYELD 258
Query: 247 SVRQGESILSG-------MIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIK 299
+ E+ +G M+G++IGSE +TVIDDPT+P +G Y+YDDEG+ + +I+
Sbjct: 259 RIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYLIR 318
Query: 300 DGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFG 359
+G++ +L +RE + L L N RA +Y P+VRM+NTY+APG+++ EE+ E++K G
Sbjct: 319 NGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIEDIKLG 378
Query: 360 VYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDL 419
VYM+ +D + +E Y+I+ GEIK V+ + + AVG+++
Sbjct: 379 VYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAVGKEV 438
Query: 420 KIEFPGFCGK---GQWVPVDDGGPHVLVKAI 447
+ PG CGK GQ VPV GG H ++ I
Sbjct: 439 EFH-PGTCGKGEPGQGVPVWMGGAHARLRDI 468
>pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii
>gi|3257259|dbj|BAA29942.1| (AP000003) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 254 bits (642), Expect = 2e-66
Identities = 156/453 (34%), Positives = 253/453 (55%), Gaps = 26/453 (5%)
Query: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSK--LEDTIK 74
+ + RFE ++NG EG+E + GIGVRVL+NG GFASTN L+K + +T+K
Sbjct: 27 YAEARFEEKQGISLAMKNGIPEGMEILSDKGIGVRVLVNGGMGFASTNVLTKESIAETVK 86
Query: 75 MAIKLAKVSNA--EVPLYVGNPVEGKAI--IKQKKDFLDVDLEEKTKLGLEVEKMIRRDK 130
A+KLAK ++ + P+ +K KKDF DV EEK +L ++E+ +
Sbjct: 87 RAVKLAKAASKLRKEPITFSEEDFHNVYYEVKMKKDFRDVSPEEKLELLKKIEEEVTSTN 146
Query: 131 IKTSR--FSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQT---YWKSFGG 185
+ +YSD V K+++NSE + IE+++PR+ + V M+ ++F G
Sbjct: 147 VNVPMRYIAYSDHVWHKVFMNSENAKIESLIPRVSVMYNLVVFENGQMEQAPFIQRAFSG 206
Query: 186 TVGWELVESVD-FNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVE 244
G EL+E + + + + + + P G++ +I+ PE+AG+ +HE++GH E
Sbjct: 207 --GLELIEKDEPWERAKREVETLRKIITEGKRSPEGKVDVIISPEVAGIAVHESVGHPYE 264
Query: 245 ADSVRQGESILSG-------MIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEI 297
D + E+ +G M+G++IGSE +TVIDDPT+P +G Y+YDDEG+ + +
Sbjct: 265 LDRIMGREAAQAGESFVKPEMLGERIGSEVVTVIDDPTIPNSWGFYLYDDEGVKARPRYL 324
Query: 298 IKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVK 357
I++G++ +L +RE + L L N RA +Y P+VRM+NTY+APG+++ EE+ E+VK
Sbjct: 325 IRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLAPGDYSFEELIEDVK 384
Query: 358 FGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGR 417
GVYM+ +D + +E Y+I+ GEIK V+ + + AVG+
Sbjct: 385 LGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEITTRGLWSSVDAVGK 444
Query: 418 DLKIEFPGFCGK---GQWVPVDDGGPHVLVKAI 447
+++ + G CGK GQ VPV GG H ++ I
Sbjct: 445 EVEF-YAGTCGKGEPGQGVPVWMGGAHARLRDI 476
>pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (strain K1)
>gi|5103477|dbj|BAA78998.1| (AP000058) 489aa long
hypothetical protein [Aeropyrum pernix]
Length = 489
Score = 252 bits (637), Expect = 6e-66
Identities = 159/462 (34%), Positives = 248/462 (53%), Gaps = 20/462 (4%)
Query: 5 LRNLIEKYSNE-VKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFAS 62
L L+EK ++ + + RF + V N +V G E G+ RV+++G GFAS
Sbjct: 26 LEKLVEKALDKGASYAEARFHARLGDSVLVVNDRVVGGGFEIEEGVAFRVIVDGALGFAS 85
Query: 63 TNDLSK--LEDTIKMAIKLAKVSNAEVPLYVGNPVE--GKA--IIKQKKDFLDVDLEEKT 116
T+ LS+ L+ + A+ +A+ S+ VG E G+A +K KKDF +++LE+K
Sbjct: 86 TSLLSEESLDSVVDHAVSIARSSSRGFRKKVGMSEERLGQAQYSLKVKKDFRNLELEDKA 145
Query: 117 KLGLEVEKMIRRDKI--KTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSAD 174
+ LE K + + K FSYSD + K+ + S+G IE+++PR+ + A D
Sbjct: 146 SIVLEYSKSLESKSVDLKAKTFSYSDVLEAKLIITSDGGNIESIIPRVSIFYNIAAEHGD 205
Query: 175 IMQTYWKSFGGTVGWELVESVDF-NYWANFISSKALSLLSARSPPSGEMPIIMDPELAGV 233
W G+ G ELV + + + ++S ++L+ A P G M +I+ PE+ G+
Sbjct: 206 RRANKWGHLAGSGGLELVGELGLESMLKDDVNSLEVNLVKAEPSPKGVMDVIISPEIVGL 265
Query: 234 FIHEALGHAVEADSVRQGESILSGM-----IGKKIGSEELTVIDDPTLPGKFGSYVYDDE 288
+HE++GH EAD V E+ +G+ + +IGS ++TV DDPT+PG +G Y+YDDE
Sbjct: 266 ALHESIGHPSEADRVMGREAAQAGLSYRMWLDGRIGSSKVTVADDPTVPGSYGFYLYDDE 325
Query: 289 GLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWT 348
+P + +I G L L+ R T+ + + NG RA +Y P+VRMSNTY+ PG+
Sbjct: 326 AVPARERILINKGELAELLHSRTTAYSFGVQSNGAARAMNYRSEPIVRMSNTYLKPGDMR 385
Query: 349 LEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDT 408
EE+ E+VK G+YM +D + E Y+IK G I + VRD +
Sbjct: 386 FEELLEDVKEGIYMKSYMEWNIDEFRLVARYVGLEAYLIKNGRIVKPVRDTVLEIPTESF 445
Query: 409 LKEIKAVGRDLKIEFPGFCGKG---QWVPVDDGGPHVLVKAI 447
+I VG+DL+ + G CGKG Q +PV GGPHV V+ +
Sbjct: 446 YSKIDGVGKDLRF-YAGICGKGEPPQPLPVWMGGPHVRVRDV 486
>gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, putative (tldD)
[Sulfolobus solfataricus]
Length = 443
Score = 238 bits (600), Expect = 1e-61
Identities = 154/439 (35%), Positives = 238/439 (54%), Gaps = 18/439 (4%)
Query: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN-GWGFASTNDLSK--LEDTIK 74
F DIR+E I E T+ + + V + G +RV+ N WGF +T+ +++ +EDTI
Sbjct: 15 FADIRYERVIANEVTITEDR-KYVSHGVDEGYSIRVIYNRNWGFKATDKITENEIEDTIN 73
Query: 75 MAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIKTS 134
+V+ +P GK I K +++ ++ DL K+ +V + IK+
Sbjct: 74 HIYGDERVNIVYLPSKHDTIKIGKDINKNEEEKIN-DLH---KVASQVNTL--HPSIKSY 127
Query: 135 RFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWELVES 194
Y D + K Y +SE I S+ VAR D+ + +G+ + +
Sbjct: 128 SIKYYDEIFHKEYYSSEDREIIADGSSSSLSILVVAREGDVTVEVSEILSTQMGY-IFDV 186
Query: 195 VDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESI 254
D N + + ++ L +P +GE P+I+ PE+ G+F HEA+GH EAD G
Sbjct: 187 FDINQVLANLQKRIINQLKGSTPKAGEYPVILAPEVVGIFTHEAIGHLSEADVTLNGS-- 244
Query: 255 LSGMIGKKIGSEELTVIDDPTLPGKFGSYVY-DDEGLPGKRVEIIKDGVLLNYLNDRETS 313
L + K+IG E L + D P + S VY DDEG+ G+ V+II++G+L ++ DR S
Sbjct: 245 LYKLRNKRIGDEFLNISDLPAMDHPQSSLVYYDDEGVEGREVKIIENGILKEFMTDRYYS 304
Query: 314 KALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIA 373
L P G+ RAQSY + L+RM NTY+ PG+ +L E+FE +K G Y++ GG+ +
Sbjct: 305 AYLGQPPTGNARAQSYRNFSLIRMRNTYMKPGDASLNELFEGIKEGYYLVSPIGGETS-S 363
Query: 374 NGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGFCGK-GQW 432
NG+F F +EGY ++ EIKE +R++GISGN + TL I+ + +D + GFC K GQ
Sbjct: 364 NGTFQFAIQEGYRVENSEIKEPLRNIGISGNTISTLNAIEMISKDFGMS-SGFCEKNGQT 422
Query: 433 VPVDDGGPHVLVKAI-VGG 450
V V +GGPH+ VK + VGG
Sbjct: 423 VQVSNGGPHIKVKKLKVGG 441
>emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 443
Score = 238 bits (600), Expect = 1e-61
Identities = 154/439 (35%), Positives = 238/439 (54%), Gaps = 18/439 (4%)
Query: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN-GWGFASTNDLSK--LEDTIK 74
F DIR+E I E T+ + + V + G +RV+ N WGF +T+ +++ +EDTI
Sbjct: 15 FADIRYERVIANEVTITEDR-KYVSHGVDEGYSIRVIYNRNWGFKATDKITENEIEDTIN 73
Query: 75 MAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIKTS 134
+V+ +P GK I K +++ ++ DL K+ +V + IK+
Sbjct: 74 HIYGDERVNIVYLPSKHDTIKIGKDINKNEEEKIN-DLH---KVASQVNTL--HPSIKSY 127
Query: 135 RFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWELVES 194
Y D + K Y +SE I S+ VAR D+ + +G+ + +
Sbjct: 128 SIKYYDEIFHKEYYSSEDREIIADGSSSSLSILVVAREGDVTVEVSEILSTQMGY-IFDV 186
Query: 195 VDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESI 254
D N + + ++ L +P +GE P+I+ PE+ G+F HEA+GH EAD G
Sbjct: 187 FDINQVLANLQKRIINQLKGSTPKAGEYPVILAPEVVGIFTHEAIGHLSEADVTLNGS-- 244
Query: 255 LSGMIGKKIGSEELTVIDDPTLPGKFGSYVY-DDEGLPGKRVEIIKDGVLLNYLNDRETS 313
L + K+IG E L + D P + S VY DDEG+ G+ V+II++G+L ++ DR S
Sbjct: 245 LYKLRNKRIGDEFLNISDLPAMDHPQSSLVYYDDEGVEGREVKIIENGILKEFMTDRYYS 304
Query: 314 KALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIA 373
L P G+ RAQSY + L+RM NTY+ PG+ +L E+FE +K G Y++ GG+ +
Sbjct: 305 AYLGQPPTGNARAQSYRNFSLIRMRNTYMKPGDASLNELFEGIKEGYYLVSPIGGETS-S 363
Query: 374 NGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGFCGK-GQW 432
NG+F F +EGY ++ EIKE +R++GISGN + TL I+ + +D + GFC K GQ
Sbjct: 364 NGTFQFAIQEGYRVENSEIKEPLRNIGISGNTISTLNAIEMISKDFGMS-SGFCEKNGQT 422
Query: 433 VPVDDGGPHVLVKAI-VGG 450
V V +GGPH+ VK + VGG
Sbjct: 423 VQVSNGGPHIKVKKLKVGG 441
>sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD protein - Escherichia
coli (strain K-12) >gi|606183|gb|AAA58046.1| (U18997)
ORF_f481 [Escherichia coli] >gi|1732437|dbj|BAA07913.1|
(D44451) TldD protein [Escherichia coli]
>gi|1789640|gb|AAC76276.1| (AE000403) suppresses
inhibitory activity of CsrA [Escherichia coli K12]
Length = 481
Score = 231 bits (584), Expect = 1e-59
Identities = 141/444 (31%), Positives = 239/444 (53%), Gaps = 14/444 (3%)
Query: 20 DIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN---GWGFASTNDLSKLEDTIKMA 76
D+ F+++ + + +E+ ++ N + G+GVR + G+ +A L LE + + A
Sbjct: 37 DLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAA 96
Query: 77 IKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRR--DKIKTS 134
+ + S +G VE + + EEK + V+K+ R +++
Sbjct: 97 RTIVRDSGDGKVQTLG-AVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEV 155
Query: 135 RFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWE---- 190
S S + ++G++ V P + S+S + + GG G+E
Sbjct: 156 TASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLA 215
Query: 191 -LVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVR 249
L V + WA AL LSA + P+G MP+++ GV +HEA+GH +E D R
Sbjct: 216 DLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNR 275
Query: 250 QGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLND 309
+G S+ SG +G+ + SE TV+DD T+ + GS DDEG PG+ +I++G+L Y+ D
Sbjct: 276 RGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQD 335
Query: 310 RETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQ 369
+ ++ + + P G+GR +SYAH+P+ RM+NTY+ PG+ T +E+ E V++G+Y GGQ
Sbjct: 336 KLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQ 395
Query: 370 VDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIE-FPGFCG 428
VDI +G F+F E Y+I+ G++ + V+ + G+ ++T+++I VG DLK++ G CG
Sbjct: 396 VDITSGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCG 455
Query: 429 K-GQWVPVDDGGPHVLVKAI-VGG 450
K GQ +PV G P + V + VGG
Sbjct: 456 KEGQSLPVGVGQPTLKVDNLTVGG 479
>pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654844|gb|AAF93595.1| (AE004129) tldD
protein [Vibrio cholerae]
Length = 481
Score = 223 bits (563), Expect = 3e-57
Identities = 142/465 (30%), Positives = 248/465 (52%), Gaps = 38/465 (8%)
Query: 13 SNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN---GWGFASTNDLSKL 69
+ ++ + DI F+++ + +E+ ++ N + G+GVR + G+ ++ L L
Sbjct: 30 TRQIDYADIYFQSSWHESLVLEDSIIKDGSFNIDCGVGVRAVSGEKTGFAYSDQIQLEGL 89
Query: 70 EDTIKMAIKLAK---------VSNAEVPLYVG--NPVEGKAIIKQKKDFLDVDLEEKTKL 118
+ + A +A+ A+ P + G NP+E + ++KT+L
Sbjct: 90 KQSAIAARGIAQQGQNLTVQAFKRAQHPAFYGAHNPLESW------------EKQQKTEL 137
Query: 119 GLEVEKMIRRDK--IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIM 176
+++ IR + I S S + + ++G+ + P + S+S +A+ D
Sbjct: 138 LKQLDAYIRTKEPLITEVSVSLSGVHEQILVAATDGTYAGDIRPLVRLSISVLAQKGDRR 197
Query: 177 QTYWKSFGGTVGW------ELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPEL 230
+ GG G+ E + + F++ A+ +AL L A + P+G MP+++
Sbjct: 198 ERGSAGGGGRFGYDYFLQEEAGQKIAFSF-ADEAIRQALVNLEAVAAPAGTMPVVLGSGW 256
Query: 231 AGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGL 290
GV +HEA+GH +E D R+G S+ +G +GKK+ S+ T++DD TL GS DDEG+
Sbjct: 257 PGVLLHEAVGHGLEGDFNRKGSSVFAGKVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGV 316
Query: 291 PGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLE 350
G+ +I+ G+L Y+ D+ ++ + + P G+GR +SYAH+P+ RM+NTY+ PGE T E
Sbjct: 317 SGQYNVLIEKGILKGYIQDKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPE 376
Query: 351 EMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLK 410
E+ VK G+Y GGQVDI +G F+F A E Y+I+ G+I ++ + G+ ++ ++
Sbjct: 377 EIIASVKKGIYAPNFGGGQVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAMQ 436
Query: 411 EIKAVGRDLKIE-FPGFCGK-GQWVPVDDGGPHVLVKAI-VGGRE 452
++ VG DL ++ G CGK GQ VPV G P + + A+ VGG E
Sbjct: 437 QVSMVGNDLALDRGVGVCGKAGQSVPVGVGQPTLKLDALTVGGTE 481
>sp|P73754|Y863_SYNY3 HYPOTHETICAL 50.4 KD PROTEIN SLR0863 >gi|7429837|pir||S74845 tldD
homolog slr0863 - Synechocystis sp. (strain PCC 6803)
>gi|1652888|dbj|BAA17806.1| (D90909) hypothetical
protein [Synechocystis sp.]
Length = 463
Score = 220 bits (556), Expect = 2e-56
Identities = 146/455 (32%), Positives = 238/455 (52%), Gaps = 14/455 (3%)
Query: 5 LRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFAST 63
L LI +Y ++ F+ IR E + T+ ++ + +VE + +G VRV G WGFAS
Sbjct: 10 LPELIGRYQSQADFISIRLEQSEGTQISLRSDQVETLSEGIAMGGQVRVCHQGGWGFASF 69
Query: 64 NDLSKLEDTIKMAIKLAK-VSNAEVPLYVGNPVEGKAIIKQK-KDFLDVDLEEKTKLGLE 121
N +L ++ AI A+ + + E L +PV+ I KD + L +K L
Sbjct: 70 NRWEQLRQRLEEAIAAARLIGDDETLLAPIDPVQQTFINPLTGKDPRQISLADKKALCDH 129
Query: 122 VEKMIR--RDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTY 179
++R DKI T+ YSD + SEG+++E + +A A+ + +Q
Sbjct: 130 YNDLLRGTSDKITTTHVRYSDSQQTVLLATSEGTLLEQCWWDLEMRFAATAKDGNGVQVG 189
Query: 180 WKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEAL 239
++ G G+ +E++D + +A+ L+ + P+++DP L G+F+HEA
Sbjct: 190 RETTGSRRGYGDLENLD--QVVQGAAQRAVKALTLPTVQGKTYPVVIDPILTGLFVHEAF 247
Query: 240 GHAVEADSVRQGESILSGM-IGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEII 298
GH EAD + + L M +G++ G EL + D PG GSY +DDEG+P ++I
Sbjct: 248 GHLSEADMLYENPDFLEVMSLGRRFGPPELQIFDGAAPPGHRGSYGFDDEGVPASTTQLI 307
Query: 299 KDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKF 358
KDG L+ L+ RET+ L P G+ R +Y + P+VRM+NT+I GE + + + ++
Sbjct: 308 KDGELVGRLHSRETAGKLGEKPTGNARCLNYHYPPIVRMTNTWIGRGETPVANLLDGIEE 367
Query: 359 GVYMIGDKGGQVDIANGS-FMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGR 417
G+Y GG + NG F F A E ++I+ G++ E V+DV +SGN+ TL I+A+
Sbjct: 368 GIYAQNWLGG---MTNGEMFTFSAGEAWMIRHGQLAEPVKDVTLSGNVFKTLANIEAIAD 424
Query: 418 DLKIEFPGFCGKG--QWVPVDDGGPHVLVKAIVGG 450
D + G CGKG + V GGP + ++ +V G
Sbjct: 425 DFYWDESGGCGKGGQNGLAVGCGGPSLRIRDVVVG 459
>gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum]
Length = 479
Score = 219 bits (552), Expect = 5e-56
Identities = 139/425 (32%), Positives = 230/425 (53%), Gaps = 9/425 (2%)
Query: 34 ENGKVEGVESNEEVGIGVR-VLINGWGFASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVG 92
+NG+++ + G G+R V + G+A ++D+S L I+ A +A V +
Sbjct: 53 DNGRLKQATYDTSQGFGLRAVKDDAVGYAHSSDVS-LPALIRAADAVAAVRGGYSGSFSA 111
Query: 93 NPVEGKAIIKQKKDFLDVD-LEEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTRKIY--LN 149
P + + LD E K KL E++ +R + + S + T ++ L
Sbjct: 112 PPPHTNVRLYGDDNPLDAPGFETKVKLLAEIDAYLRDKDPRVRQVSVTLGATWQVVEILR 171
Query: 150 SEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGW-ELVESVDFNYWANFISSKA 208
+G + P + ++S VA D ++ K +GG G+ E +ES ++ A+ +A
Sbjct: 172 PDGESYRDIRPLVRVNISVVAGQGDRQESGSKGYGGRAGYAEFIESKNWRDAADGALREA 231
Query: 209 LSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEEL 268
L L + P+GEM +++ GV +HEA+GH +E D R+ S +G++G+++ ++ +
Sbjct: 232 LVNLESIPAPAGEMDVVLGAGWPGVMLHEAVGHGLEGDFNRKRTSAFAGLMGRQVAAKGV 291
Query: 269 TVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQS 328
TV+DD T+ + GS DDEG P R +I+DG+L+ Y+ DR+ ++ +N+ P G+GR Q
Sbjct: 292 TVVDDGTIASRRGSLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMNMKPTGNGRRQG 351
Query: 329 YAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIK 388
YAHVP+ RM+NTY+ G+ E+ VK GV+ GGQVDI +G ++F E Y I+
Sbjct: 352 YAHVPMPRMTNTYMLAGDRDPAEILASVKNGVFAANFGGGQVDITSGKYVFQCTEAYKIE 411
Query: 389 EGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFP-GFCGK-GQWVPVDDGGPHVLVKA 446
G+I ++ + GN L I+ +G DL ++ G CGK GQ VPV G P +L++
Sbjct: 412 NGKIGAPLKGAMLIGNGPTDLHRIRMIGNDLALDTGIGTCGKNGQGVPVGVGQPSLLMER 471
Query: 447 I-VGG 450
I VGG
Sbjct: 472 ITVGG 476
>pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07784.1|
(AE000768) TldD protein [Aquifex aeolicus]
Length = 404
Score = 217 bits (548), Expect = 2e-55
Identities = 126/387 (32%), Positives = 210/387 (53%), Gaps = 12/387 (3%)
Query: 17 KFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING---WGFASTNDLSKLEDTI 73
++ +I +E + T +E+ K++ V + G+G+R++ NG +G+ + L++
Sbjct: 19 EYGEIFYEKSRTTRMHLEDRKIDKVTHGYDEGVGLRLIKNGKTYYGYTTNPTFENLKELA 78
Query: 74 KMAIKLAKVSNAEVPLYVGNP-VEG--KAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDK 130
K+ + P+ +G ++G + +I K+ L E + + DK
Sbjct: 79 KILAR----GEGHGPVAIGKRYIQGYTEVLIDPDKESLKFRAEILRRADEKARSF--GDK 132
Query: 131 IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWE 190
IK D + +N+ G E R+ F + VA + +Q ++S GG G+E
Sbjct: 133 IKQVLAVLMDKTREIMVINTLGETAEDTQKRVVFFVEVVASDGETLQRGYESLGGRRGFE 192
Query: 191 LVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQ 250
+ A + +AL +LSA+ P+G ++M + G IHEA+GH +EAD V+Q
Sbjct: 193 IFNETPPEVIAEKAAKRALLMLSAKPAPAGTFTVVMSSQAGGTMIHEAVGHGLEADLVQQ 252
Query: 251 GESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDR 310
G S+ +G +G+K+ SE +TVIDD TLP GS+ DDEG+P +R +IKDGVL+ Y+ DR
Sbjct: 253 GLSVYAGKLGEKVASELVTVIDDATLPYHNGSFTVDDEGVPAQRKVLIKDGVLVGYMYDR 312
Query: 311 ETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQV 370
+ + G+GR QSYAH+P+VRM+NT+I G+ E++ ++ K GV ++ GG+V
Sbjct: 313 LRAMKDGVESTGNGRRQSYAHIPIVRMTNTFIDKGQDNPEDIIKDTKKGVLVVKMGGGEV 372
Query: 371 DIANGSFMFGAKEGYIIKEGEIKEQVR 397
+ G F+F EGY+I+ GEI +R
Sbjct: 373 NTVTGDFVFEVMEGYMIENGEITYPIR 399
>pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9106089|gb|AAF83937.1|AE003949_1 (AE003949) TldD
protein [Xylella fastidiosa]
Length = 485
Score = 215 bits (542), Expect = 8e-55
Identities = 138/455 (30%), Positives = 246/455 (53%), Gaps = 24/455 (5%)
Query: 16 VKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSKLEDTIK 74
V F D+ F++ +++E+G V+ + E G+GVR + GFA ++D+++ + ++
Sbjct: 36 VDFGDLYFQHARRESWSIEDGIVKDGTHSIEQGVGVRAISGEKTGFAYSDDINR-DALLE 94
Query: 75 MAIKLAKVSNAEVPLYVGNPVEGK--AIIKQKKDF-----LD----VDLEEKTKLGLEVE 123
A +S + G+ V+G ++ Q+++ LD +D EK + V+
Sbjct: 95 AAYAARAISRSP-----GDGVQGTHAVLLHQERELCLYPALDPVGGMDNAEKIAVMRRVD 149
Query: 124 KMIRR--DKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWK 181
+++R ++ + S V + S+G + V P + ++ + ++ +
Sbjct: 150 QLLRAADPRVTQVMVNLSGGVDVVLIARSDGVLAADVRPLVRLNVQVIVEGHGRRESGYA 209
Query: 182 SFGGTVGW-ELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALG 240
GG G+ EL +A +AL L A P+G MP+++ GV +HEA+G
Sbjct: 210 GGGGRYGYAELFADGRPEAFAREALRQALVNLEAIPAPAGVMPVVLGAGWPGVLLHEAVG 269
Query: 241 HAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKD 300
H +E D R+G S+ +G IG+++ S +T++DD TL G+ GS DDEG P + +I+D
Sbjct: 270 HGLEGDFNRKGTSVYAGRIGERVASPGVTIVDDGTLDGRRGSLNIDDEGTPTQCTTLIED 329
Query: 301 GVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGV 360
GVL+ Y+ D ++ + + G+GR +S+AH+ + RM+NTY+ G + EEM VK G+
Sbjct: 330 GVLVGYMQDTLNARLMGVASTGNGRRESFAHLTMPRMTNTYMRAGVHSREEMIRSVKKGL 389
Query: 361 YMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
Y + GGQVDI +G ++F A E Y+I++G + ++ + GN +T++ ++ +G DL
Sbjct: 390 YAVNFGGGQVDITSGKYVFSATEAYLIEDGRVTAPIKGATLIGNGPETMQRVRMIGDDLA 449
Query: 421 IEF-PGFCGK-GQWVPVDDGGPHVLVKAI-VGGRE 452
++ G CGK GQ VPV G P +L+ + VGG +
Sbjct: 450 LDAGVGVCGKDGQSVPVGVGQPSLLIDGLTVGGTQ 484
>sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13101.1| (AP001119) tldD
protein [Buchnera sp. APS]
Length = 483
Score = 215 bits (542), Expect = 8e-55
Identities = 140/469 (29%), Positives = 241/469 (50%), Gaps = 38/469 (8%)
Query: 8 LIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVL---INGWGFASTN 64
L E + ++ + D+ F++ I+ + +EN ++ + + GIGVR + G+ ++
Sbjct: 25 LEELCTRQLDYGDLYFQSHIHESWILENSIIKEGNYHSDAGIGVRAIRGESTGFAYSDQI 84
Query: 65 DLSKLEDTIKMA--IKLAKVSNAEV--------PLYVG-NPVEGKAIIKQKKDFLDVDLE 113
L L + K A I L K S P+Y NP+EG +
Sbjct: 85 SLDSLRRSTKKAHSIILTKGSGKTKTLSKKTIEPIYKNVNPLEG------------FSSK 132
Query: 114 EKTKLGLEVEKMIRR--DKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVAR 171
EKT L + R ++ S + + + +++G+++ + P I FS+S +
Sbjct: 133 EKTDLLYRANYIARSLDHRVIEVNASLTGSYEQILVASTDGNLVSDIRPSIQFSISVLVE 192
Query: 172 SADIMQTYWKSFGGTVGWELVESVD-------FNYWANFISSKALSLLSARSPPSGEMPI 224
+ G + + D ++W+ AL LS++ SG P+
Sbjct: 193 DHGKRERGRSGGGSRTDYNFFLNQDDSSKEIRIDHWSKEAVRIALLNLSSKEALSGTFPV 252
Query: 225 IMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYV 284
++ GV +HEA+GH +E D R+G SI + MIGKK+ SE T+IDD T+ + GS
Sbjct: 253 VLGSGWPGVLLHEAIGHGLEGDFNRKGTSIFTNMIGKKVASELCTIIDDGTIKNQRGSLS 312
Query: 285 YDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAP 344
DDEG PG++ +I++G+L Y+ D+ ++ + + G+GR +SY+ +P+ RM+NTY+
Sbjct: 313 IDDEGTPGQKNILIENGILKKYMQDKLNARLMGVKSTGNGRRESYSCLPMPRMTNTYMLS 372
Query: 345 GEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGN 404
G+ L+++ + V +G+Y + GGQVDI +G F+F E Y+IK G+I +++ + G+
Sbjct: 373 GKSKLDDIIKSVDYGIYAVNFSGGQVDITSGKFVFSTSEAYLIKNGKIVTPIKNTTLIGS 432
Query: 405 ILDTLKEIKAVGRDLKI-EFPGFCGK-GQWVPVDDGGPHV-LVKAIVGG 450
L+ +++I VG DLK+ E G CGK GQ +PV G P + L +GG
Sbjct: 433 GLEVMQKISMVGDDLKMDEGMGICGKDGQNIPVGIGQPSMKLENLTIGG 481
>pir||D72342 tldD protein - Thermotoga maritima (strain MSB8)
>gi|4981251|gb|AAD35808.1|AE001743_10 (AE001743) tldD
protein [Thermotoga maritima]
Length = 499
Score = 209 bits (527), Expect = 5e-53
Identities = 142/445 (31%), Positives = 227/445 (50%), Gaps = 16/445 (3%)
Query: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGWG-FASTNDLSKLEDTIKMA 76
F ++ FE + +++GK+E S E VG+G+R + +A TNDLS+ E+ I +A
Sbjct: 58 FAELFFERKYENRYELKDGKIEQATSGEIVGVGIRGFLGTKAVYAYTNDLSR-ENLINVA 116
Query: 77 IKLAKV---SNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDK--- 130
K+ + + E + N + K ++ + EKT ++K K
Sbjct: 117 KKVGEALGETKVEDLTFNFNRTKRK---ERHVVLIPPAQVEKTDKVSVMKKAYYAAKNYS 173
Query: 131 --IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVG 188
IK Y D+ + NSEG+ E R ++AVA +++ + G +G
Sbjct: 174 ELIKQVVVWYWDYDQEILVANSEGTWAEDRRVRTRLMINAVAEKDGVLERGFYGPGAGMG 233
Query: 189 WELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSV 248
+E + +D A + A ++ A P+G+M +++ GV HEA+GH +EA SV
Sbjct: 234 FEFFDRIDVEEAAKKAARIAARMVEAEPAPAGKMTVVIANGFGGVIFHEAVGHGLEATSV 293
Query: 249 RQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLN 308
+G S+ +G +G+K+ +E ++ +DD T+P +GS DDEG P +R +I GVL+ YL
Sbjct: 294 AKGASVFAGKLGQKVAAECVSAVDDATIPNGWGSANVDDEGTPTQRTLLIDKGVLVGYLV 353
Query: 309 DRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGG 368
D+ + + + G GR Q Y P RMSNT+I PG++ EE+ ++G+Y GG
Sbjct: 354 DKLGERRMGMKSTGSGRRQDYTFPPTSRMSNTFILPGDYHPEEIIAATEYGLYAKTMGGG 413
Query: 369 QVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGFCG 428
V+ A G F F E Y+I++G I + VR + G + +++I VG DL + G CG
Sbjct: 414 SVNPATGEFNFAVSEAYLIEKGRITKPVRGATLIGKGHEIIQKIDMVGNDLARD-QGMCG 472
Query: 429 K-GQWVPVDDGGPHVLVKAI-VGGR 451
VP D G P + VK I VGGR
Sbjct: 473 SFSGSVPADVGQPTIRVKEIVVGGR 497
>pir||D83086 conserved hypothetical protein PA4474 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950711|gb|AAG07862.1|AE004861_3 (AE004861)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 480
Score = 205 bits (516), Expect = 9e-52
Identities = 144/463 (31%), Positives = 238/463 (51%), Gaps = 19/463 (4%)
Query: 2 IDELRNLIEKYSNE-VKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WG 59
+D L ++ + + + D+ F++ + + +E+G V+ N + G+GVR G
Sbjct: 20 LDSLPGILHELNGPGIDAADLYFQSQVSESWMLEDGIVKEGSFNLDQGVGVRAQSGEKTG 79
Query: 60 FASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQK----KDFLDV-DLEE 114
FA +N ++ E + A+ +S A G+ KA++ + ++ LDV E
Sbjct: 80 FAYSNAITA-EALKQAAVAARSISRAGQN---GSVQAFKAVVPARLYAGENPLDVLSRAE 135
Query: 115 KTKLGLEVEKMIRR--DKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARS 172
K +L +++ R +I+ S + + + S+GS+ + P + F++S +
Sbjct: 136 KVELLKQIDAATRALDPRIQQVTVSMAGVWEQILVAASDGSLAADIRPLVRFNVSVIVEQ 195
Query: 173 ADIMQTYWKSFGGTVGWE--LVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPEL 230
+ GG + L E Y A +AL L A P+G +P++M
Sbjct: 196 NGRRERGGHGGGGRTDYRYFLQEDRAMGY-AREALRQALVNLEAIPAPAGTLPVVMGAGW 254
Query: 231 AGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGL 290
+GV +HEA+GH +E D R+G S SG +G+K+ S T++DD TL G+ GS DDEG
Sbjct: 255 SGVLLHEAVGHGLEGDFNRKGSSAYSGRVGEKVASSLCTIVDDGTLAGRRGSLSVDDEGT 314
Query: 291 PGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLE 350
P +I++GVL Y+ D+ ++ + + G+GR +SYAH+P+ RM+NTY+ GE +
Sbjct: 315 PSNCNVLIENGVLKGYMQDKLNARLMGVARTGNGRRESYAHLPMPRMTNTYMLAGESDPQ 374
Query: 351 EMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLK 410
E+ V+ G+Y GGQVDI +G F+F E Y+I+ G I V+ + GN + +
Sbjct: 375 EIIASVEKGIYCANLGGGQVDITSGKFVFSTSEAYLIENGRITTPVKGATLIGNGPEAMS 434
Query: 411 EIKAVGRDLKIEF-PGFCGK-GQWVPVDDGGPHVLVKAI-VGG 450
+ VG DL ++ G CGK GQ VPV G P + + AI VGG
Sbjct: 435 RVSMVGNDLALDSGVGTCGKDGQSVPVGVGQPTLKIDAITVGG 477
>sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG
Length = 482
Score = 199 bits (500), Expect = 7e-50
Identities = 133/464 (28%), Positives = 243/464 (51%), Gaps = 21/464 (4%)
Query: 5 LRNLIEKYSNE-VKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN---GWGF 60
L N+ + S+ + + D+ F+ + + +E+G ++ + + G+GVR + G+ +
Sbjct: 20 LLNIFDIMSHRNIDYADLYFQLSQDESWVLEDGIIKEGSFHIDRGVGVRAVSGEKTGFAY 79
Query: 61 ASTNDLSKLEDTIKMAIKLAKVSNAEV----PLYVGNPVEGKAIIKQKKDFLDVDLEEKT 116
A +L+ L+ + +A+V + V NP+ A I + E+K
Sbjct: 80 ADQINLASLQQCAEAVKGIAQVKQGNLISPSAFNVVNPIARYAAINPLESLTK---EKKI 136
Query: 117 KLGLEVEKMIRRDKIKTSRFS--YSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSAD 174
+L V++ R + + ++ S S + + ++G++ + P + S+S +
Sbjct: 137 ELLHLVDRTARAEDHRVTKVSASLSSVYEEVLIMATDGTLAADIRPLVRLSISVLVEENG 196
Query: 175 IMQTYWKSFGGTVGWE-LVESVDFNYWANFISSKA----LSLLSARSPPSGEMPIIMDPE 229
+ GG G + E VD + A + +A L LSA + P+G MP+++
Sbjct: 197 KRERGSCGSGGRFGLDWFFEVVDGDIRAVLFAKEAVRQALVNLSAVAAPAGLMPVVLGAG 256
Query: 230 LAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEG 289
GV +HEA+GH +E D R+ S+ +G IG+++ S T++DD T+ + GS DDEG
Sbjct: 257 WPGVLLHEAVGHGLEGDFNRKESSLFTGKIGEQVTSPLCTIVDDGTIENRRGSLTIDDEG 316
Query: 290 LPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTL 349
+P + +IKDG+L Y+ D+ ++ + + G+GR +SYAH+P+ RM+NTY+ G+
Sbjct: 317 VPSQCNVLIKDGILQGYMQDKMNARLMGVSTTGNGRRESYAHLPMPRMTNTYMLAGQSQF 376
Query: 350 EEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTL 409
+++ VK G+Y GGQVDI +G F+F E Y+I++G+I + V+ + G+ ++ +
Sbjct: 377 DDLIASVKQGIYAPHFGGGQVDITSGKFVFSTSEAYLIEKGKITKPVKGATLIGSGIEVM 436
Query: 410 KEIKAVGRDLKIEFP-GFCGK-GQWVPVDDGGPHVLVKAI-VGG 450
++I V +++ G CGK GQ VPV G P + + I VGG
Sbjct: 437 QKISMVADKSELDLGIGVCGKEGQSVPVGVGQPALKIDEITVGG 480
>pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379119|emb|CAB83668.1|
(AL162752) TLDD protein homolog [Neisseria meningitidis
Z2491]
Length = 480
Score = 191 bits (481), Expect = 1e-47
Identities = 127/450 (28%), Positives = 225/450 (49%), Gaps = 16/450 (3%)
Query: 13 SNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN---GWGFASTNDLSKL 69
++ V + DI + T Y + +E G V+ G+GVR + + +A + + +
Sbjct: 32 AHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSI 91
Query: 70 EDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRR- 128
+ + A++ + +V + + GK + +D K L +VE + +
Sbjct: 92 NRSAR-AVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAIAKAA 150
Query: 129 DKIKTSRFSYSDFVTRKIYL-NSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTV 187
D + +YL +G + P + +++ +A+ + + S GG
Sbjct: 151 DPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQ--GSAGGGG 208
Query: 188 GWELVESVDFNYWANFISS---KALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVE 244
++L D N F+ + +AL+ L +R P+GEM +++ GV +HEA+GH +E
Sbjct: 209 RYDLAY-FDENLVRQFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLE 267
Query: 245 ADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLL 304
D R+G S+ SG IG+++ ++ +TV+D + G+ GS DDEG +R +I+DG+L+
Sbjct: 268 GDFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILV 327
Query: 305 NYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIG 364
Y+ D ++ G+GR +SYA P+ RM+NT++ G + EE+ + G+Y +
Sbjct: 328 GYMQDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVN 387
Query: 365 DKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEF- 423
GGQVDI +G F+F A E + ++ G ++ V+ I GN + LK + +G D ++
Sbjct: 388 FGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVSMIGNDTALDSG 447
Query: 424 PGFCGK-GQWVPVDDGGPHVLVKA--IVGG 450
G CGK GQ VPV G P + + A VGG
Sbjct: 448 VGVCGKEGQSVPVGVGQPTLRIDAGLTVGG 477
>pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7227328|gb|AAF42385.1| (AE002556) tldD
protein [Neisseria meningitidis MC58]
Length = 480
Score = 191 bits (480), Expect = 1e-47
Identities = 122/447 (27%), Positives = 220/447 (48%), Gaps = 10/447 (2%)
Query: 13 SNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN---GWGFASTNDLSKL 69
++ V + DI + T Y + +E G V+ G+GVR + + +A + + +
Sbjct: 32 AHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSI 91
Query: 70 EDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRR- 128
+ + A++ + +V + + GK + +D K L +VE + +
Sbjct: 92 NRSAR-AVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAIAKAA 150
Query: 129 DKIKTSRFSYSDFVTRKIYL-NSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTV 187
D + +YL +G + P + +++ +A+ + + GG
Sbjct: 151 DPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQGSAGGGGRY 210
Query: 188 GWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADS 247
+ + + + +AL+ L +R P+GEM +++ GV +HEA+GH +E D
Sbjct: 211 DLAYFDENLVHRFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEGDF 270
Query: 248 VRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYL 307
R+G S+ SG IG+++ ++ +TV+D + G+ GS DDEG +R +I+DG+L+ Y+
Sbjct: 271 NRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVGYM 330
Query: 308 NDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKG 367
D ++ G+GR +SYA P+ RM+NT++ G + EE+ + G+Y + G
Sbjct: 331 QDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVNFGG 390
Query: 368 GQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEF-PGF 426
GQVDI +G F+F A E + ++ G ++ V+ I GN + LK + +G D ++ G
Sbjct: 391 GQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVSMIGNDTALDSGVGV 450
Query: 427 CGK-GQWVPVDDGGPHVLVKA--IVGG 450
CGK GQ VPV G P + + A VGG
Sbjct: 451 CGKEGQSVPVGVGQPTLRIDAGLTVGG 477
>emb|CAC11942.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 455
Score = 185 bits (465), Expect = 9e-46
Identities = 127/453 (28%), Positives = 218/453 (48%), Gaps = 16/453 (3%)
Query: 5 LRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING--WGFAS 62
L +++ ++ F D RF + NG+ + + + G +RV+ + +
Sbjct: 2 LDRILDYAGSKSAFADARFMEIEGRGAVIRNGEFDESLYSNDSGYAIRVVNDSIAMAYVD 61
Query: 63 TNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEV 122
+ D K+ + A+ L + +Y G + D L + + E
Sbjct: 62 SEDWDKVRAVVDDAV-LRSRRPGKNRIYRGRSEKASWSEIGSDHVRDHSLGDMIAILKEA 120
Query: 123 EKMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKS 182
+ + ++ S + SD ++Y N++GS +E RI+F+ D + +
Sbjct: 121 DSVAEEANVRIS--ALSDRFVHQVYENTDGSHVEGTYSRIFFNYLVGVSENDRYEQSSEE 178
Query: 183 FGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHA 242
FG T G++ + + S ++ A S G +I+ PE++G+ HE+ GH
Sbjct: 179 FGWTGGYDAFDFKTISETMKNDVSNLREIILAPSVEPGNFDVIVGPEISGIVAHESAGHP 238
Query: 243 VEADSVRQGESILSG---MIGK----KIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRV 295
E D + E+ L+G + GK +IGSE+++VIDDPTL G +G Y+YDDEG+ ++
Sbjct: 239 TEYDRIAGREAALAGESFLTGKTFPYRIGSEKVSVIDDPTLKGSYGYYLYDDEGVRARKR 298
Query: 296 EIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEE 355
+ ++G +L +RE++ + NG GR+ S+ PL RMS TYI PG+++ EE+FE
Sbjct: 299 YLYRNGYTSEFLINRESAAWIGQESNGSGRSSSWDMEPLARMSTTYIEPGDYSFEELFEG 358
Query: 356 VKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAV 415
V G+Y+ +D + + KE Y I+ G+IK +VR + N + + AV
Sbjct: 359 VHRGIYIKSFTEWNIDDIRFNERYVGKEAYYIENGDIKGRVRRPILETNTIKFYSAVDAV 418
Query: 416 GRDLKIEFPGFCGKG---QWVPVDDGGPHVLVK 445
G+DL G CGKG Q V V GGPH+ ++
Sbjct: 419 GKDLHFS-AGICGKGDPEQGVEVWMGGPHMRLR 450
>gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 458
Score = 182 bits (458), Expect = 6e-45
Identities = 138/457 (30%), Positives = 227/457 (49%), Gaps = 22/457 (4%)
Query: 4 ELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFAS 62
+L++L +K+ ++++R + NG++ G + G VR +G FAS
Sbjct: 3 DLQSLYDKF--RYPYVEVRRHIVSTFGMSFLNGRLMGSFRFTDDGYSVRYYKDGVLYFAS 60
Query: 63 TNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEV 122
+N+ + L + K K+ E L P EG +K+ K F + ++EK +
Sbjct: 61 SNNPNDLLSSNKEY----KIEGWESGLDNTEPKEGSYEVKEGKPFDLMSVDEKISFFKNL 116
Query: 123 EKMIRRDK-IKTSRFSYSDFVTRK-IYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYW 180
+ ++ + +K+ F Y + + K I +N GS I VPR+Y ++ V + T +
Sbjct: 117 YEAVKDFRSVKSVSFFYDESIEEKEIIVN--GSRIVGRVPRLYVGMNLVLNENNRTATAF 174
Query: 181 KSFGGTVGWELVESVDFN-YWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEAL 239
GG+ G E++E ++ N + + S L +S +++ L G+ HE++
Sbjct: 175 YELGGSGGLEVLERMNLNEVVVDKVRSVTEVLAKGKSFGERTTDVVLSNMLTGIMAHESV 234
Query: 240 GHAVEADSV------RQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGK 293
GH EAD V + G S L+ + +IGS+ +TVIDDPT+P G Y DDEG+ +
Sbjct: 235 GHPFEADRVLGREFAQAGLSYLAELKDNRIGSDVVTVIDDPTIPNSGGYYTTDDEGVEAR 294
Query: 294 RVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMF 353
+IKDG + YL +R +S N+ NG RA ++ PL+RMSNT+ PG T +E+
Sbjct: 295 PKYLIKDGKVNEYLQNRFSSSKFNVKSNGSARAANFDREPLIRMSNTFFKPGNMTFDELL 354
Query: 354 EEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIK 413
E+VK GVY+ +D + E Y IK G+I + V G + LK +
Sbjct: 355 EDVKEGVYIKSYMEWNIDDMRLGQRYVGLEAYEIKNGKIGDPVLFPVFQGKTTELLKAVD 414
Query: 414 AVGRDLKIEFPGFCGKG---QWVPVDDGGPHVLVKAI 447
AV L + +PG CGKG Q +PV GGP++ ++ +
Sbjct: 415 AVDNTL-VFYPGTCGKGDPDQGIPVWLGGPNMRLRNV 450
>pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment)
Length = 313
Score = 173 bits (433), Expect = 5e-42
Identities = 105/314 (33%), Positives = 169/314 (53%), Gaps = 16/314 (5%)
Query: 148 LNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWELVESVDFNYWANFISS- 206
L +G + P + ++S VA D ++ K +GG G+ +FN A+ ++
Sbjct: 2 LRPDGESYRDIRPLVRVNISVVAGQGDRQESGSKGYGGRAGY-----AEFNLRASNLART 56
Query: 207 ------KALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIG 260
+AL L + P+GEM +++ GV +HEA+GH +E D R+ S SG++G
Sbjct: 57 PPTALREALVNLESIPAPAGEMDVVLGAGWPGVMLHEAVGHGLEGDFNRKRTSAFSGLMG 116
Query: 261 KKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVP 320
+++ ++ +TV+DD T+ + GS DDEG P R +I+DG+L+ Y+ DR+ ++ +N+ P
Sbjct: 117 RQVAAKGVTVVDDGTIASRRGSLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMNMKP 176
Query: 321 NGHGRAQSYAHVPLVRMSNTYIAPG-EWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMF 379
G+ A+ YAHVP+ RM+NTY+ G + + VK GGQVDI +G ++
Sbjct: 177 TGNAAARRYAHVPMPRMTNTYMLRGRSRSGRGVLASVKNAASRANFGGGQVDITSGKYVS 236
Query: 380 GAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFP-GFCGK-GQWVPVDD 437
E Y + G+ + GN L I+ +G DL ++ G CGK GQ VPV
Sbjct: 237 QCTEAYKSENGKSGGPAEGRMLIGNGPTDLHRIRMIGNDLALDTGIGTCGKNGQGVPVGV 296
Query: 438 GGPHVLVKAI-VGG 450
G P +L++ I VGG
Sbjct: 297 GQPSLLMERITVGG 310
>dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity of the cabon
storage regulator (CsrA) [Bacillus halodurans]
Length = 432
Score = 158 bits (395), Expect = 1e-37
Identities = 95/257 (36%), Positives = 136/257 (51%), Gaps = 8/257 (3%)
Query: 192 VESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQG 251
V+ D + ++ A+ L AR PSG +I+ P A HE +GH +EAD
Sbjct: 170 VQEEDLQELVLYTANAAMEKLDARPFPSGSYALILGPLAAPGIFHEVVGHGLEADIASIP 229
Query: 252 ESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRE 311
+S +G +G E++T+IDDPT G GSY DDEG ++ +I+ G ++NYL+
Sbjct: 230 QSAFHQRLGAMVGCEKVTIIDDPTKEGLPGSYSLDDEGTIAQQTTLIEKGRVVNYLSHLH 289
Query: 312 TSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVD 371
T NGHGR +Y H+PLVRMSNT++ PG EEM + + G+Y+ G V+
Sbjct: 290 TGHP----TNGHGRVINYQHLPLVRMSNTFLLPGTDDPEEMVSDTEVGLYVKKAINGDVN 345
Query: 372 IANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKI--EFPGFCGK 429
+ G F EGY+I++G+I + + G+ L+ I VG D I E G CGK
Sbjct: 346 MITGEFEIHVAEGYLIEKGQITSPILPTTLKGDGQKLLQSIDRVGNDFAIHSEVRGGCGK 405
Query: 430 -GQW-VPVDDGGPHVLV 444
GQ +PV G P V V
Sbjct: 406 LGQSPLPVSAGSPTVRV 422
>sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|7429840|pir||S75512
hypothetical protein slr1322 - Synechocystis sp. (strain
PCC 6803) >gi|1653157|dbj|BAA18073.1| (D90911)
hypothetical protein [Synechocystis sp.]
Length = 489
Score = 153 bits (383), Expect = 4e-36
Identities = 123/447 (27%), Positives = 196/447 (43%), Gaps = 15/447 (3%)
Query: 18 FMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN-GWGFASTNDLS------KLE 70
F++ E Y E+ + + G GVRV G + STND+S LE
Sbjct: 45 FVEFFLEKVNYVSCLAEDDAITSLTPRLSSGCGVRVYKGKGDCYVSTNDISFNGLRTALE 104
Query: 71 DTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLD--VDLEEKTKLGLEVEKMIRR 128
+ + + VP + A K+K +L ++E + + L + +
Sbjct: 105 KGLSILGLTLPAGQSFVPELNLEMLRDYAGAKEKDQWLHRCSPMQEMSDILLGANQKLDH 164
Query: 129 --DKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGT 186
++ R +Y + S+G+ + S + + K G T
Sbjct: 165 YASHAQSRRAAYFRDWQEVLVAASDGTFARDIRLTQSVGFSLFCADGEHRTSIGKRSGDT 224
Query: 187 VGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEAD 246
+ + + D A ++ A +L A SG PIIM + GV HEA GH +E
Sbjct: 225 SNPDYLRTWDAETSAQEVAESAGKMLYADYVESGNYPIIMANQFGGVIFHEACGHLLETT 284
Query: 247 SVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNY 306
+ + G+KI E LT D+ FG+ DDEG+P +R +I++G+L N+
Sbjct: 285 QIEHKTTPFLDKKGEKIAHENLTAWDEGLTDNAFGTIDMDDEGMPTQRTLLIENGILKNF 344
Query: 307 LNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDK 366
+ DR S G GR QSYA+ RM NTYIAPG ++++++F V+ G+Y
Sbjct: 345 IADRTGSIRTGHPRTGSGRRQSYAYAAASRMRNTYIAPGNYSVDDIFNSVEKGIYCKQMG 404
Query: 367 GGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGF 426
GG V A G F F E Y+++ G++ + ++ + G + + +I +DL + GF
Sbjct: 405 GGSVG-ATGEFNFAVSEAYLVENGKLTKPLKGATLIGTATEIMNKISMSSQDLGLA-AGF 462
Query: 427 CGK-GQWVPVDDGGPHVLVKAI-VGGR 451
CG V V G PH+ V I VGGR
Sbjct: 463 CGSVSGSVYVTVGQPHIKVDGITVGGR 489
>pir||E70461 pmbA protein - Aquifex aeolicus >gi|2984159|gb|AAC07693.1|
(AE000761) peptide maturation [Aquifex aeolicus]
Length = 441
Score = 144 bits (359), Expect = 2e-33
Identities = 117/466 (25%), Positives = 224/466 (47%), Gaps = 44/466 (9%)
Query: 2 IDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN---GW 58
+D L NL++KY ++ FE + V N +VE V S+EE GIG+RVL + G+
Sbjct: 1 MDNLENLVKKYIKPGYEYEVFFERVKKLKIEVSNEQVENVSSSEERGIGIRVLKDKRLGF 60
Query: 59 GFASTNDLSKLEDTIKMAIKLAKVSNA-EVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTK 117
+ S +++DT++ A+++ ++ E ++ KA+ ++ L + L+EK +
Sbjct: 61 SYTSFLGEEEIKDTVEKAMEMCEIQEPDEANGFIEKLKPSKAVSVYDEESLSIPLQEKME 120
Query: 118 LGLEVEKMIRR-DK----IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARS 172
+ +++EK + DK ++ S + +F R NS G + F + +
Sbjct: 121 IPVKMEKYAKELDKRIVGVRKSTLTEVEFEVRSF--NSFG---------VEFGYRGTSYT 169
Query: 173 ADIMQTYWKSFGGTVGWEL-----VESVDFNYWANFISSKALSLLSARSPPSGEMPIIMD 227
+ I ++ + WE ++++++ K ++LL + MP++
Sbjct: 170 SMIATLGTENDDSAISWEFRGARRLKNLNWKSMVEDAVFKTVNLLHPSPFETRSMPVVFF 229
Query: 228 PELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDD 287
E + + +A D + +G+++L + + + SE++T++DD ++ F ++ YD
Sbjct: 230 RESFAMLL-DAFSPMFLGDYLVKGKTLLKDKVNEIVASEKITLVDDGSMEEGFSTFPYDA 288
Query: 288 EGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEW 347
EG+P ++ +I GV +L+ T++ + P G+ SY +P +N Y+ G
Sbjct: 289 EGVPTRKNLLIDKGVFKGFLHSLYTARKSSQEPTGNSVRGSYKELPSSGTTNFYLEKGNL 348
Query: 348 TLEEM---FEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGN 404
+ EE+ ++EV + ++G VD +G F G G + K+G+ + VR + ++GN
Sbjct: 349 SFEELLSYYDEVFLVLEVMGLH--TVDTISGDFSLGC-SGILYKKGKKDKTVRGITVAGN 405
Query: 405 ILDTLKEIKAVGRDLKIEFPGFCGKGQWVPVDDGGPHVLVKAIVGG 450
ILD LK ++ VG DL F G G P VLVK + G
Sbjct: 406 ILDLLKNVEEVGNDLT-----FYG-------SVGSPSVLVKKLTLG 439
>pir||B83330 hypothetical protein PA2529 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948585|gb|AAG05917.1|AE004680_5
(AE004680) hypothetical protein [Pseudomonas aeruginosa]
Length = 477
Score = 136 bits (340), Expect = 4e-31
Identities = 125/456 (27%), Positives = 213/456 (46%), Gaps = 30/456 (6%)
Query: 1 MIDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGW-G 59
MID L++ + +F +R+ +V E +++ G + V +NG
Sbjct: 1 MIDPLKHRFAALRSRAEFHSLRYVQRSGEYLSVRRNVSEPPHFSQDRGAMLCVRLNGVEA 60
Query: 60 FASTNDLSK------LEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQ-KKDFLDVDL 112
+A+TNDLS LE + A ++A+ + +V P G++ + +D L
Sbjct: 61 YAATNDLSAAGLQAALEQAERQAERIARHALFDVRGLP--PASGRSQYRSPNQDAPFPSL 118
Query: 113 EEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTRK--IYLNSEGSVIETVVPRIYFSLSAVA 170
E +L E + RD+ + +S V+R+ +YLNS G+ +Y S A
Sbjct: 119 AECYELLAEESAKVPRDE-RLVNWSVFLEVSRQEQLYLNSAGAEQYHEQRFVYPGASVTA 177
Query: 171 RSADIMQTYWKSFGG-----TVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPII 225
QT +SFGG G E++E + A I+ +AL LL+A + PSG ++
Sbjct: 178 YDGHDSQT--RSFGGHHAGQQGGAEVIERLGLVGAAPRIADQALQLLAAPNTPSGRCDLL 235
Query: 226 MDPELAGVFIHEALGHAVEADSVRQGESILSGM-------IGK-KIGSEELTVIDDPTLP 277
+ P+ + IHE++GH +E D + E +G G+ + GS L V DP +P
Sbjct: 236 LMPDQMILQIHESIGHPLELDRILGDERNYAGTSFIKTEDFGRYQYGSSLLNVSFDPEIP 295
Query: 278 GKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRM 337
+ SY DD+G P ++ +I++G LL L + L + RA S+ P+ RM
Sbjct: 296 EELASYRQDDDGSPARKEYLIREGRLLRPLGGALSQHRSGLEGVANSRASSWNRAPIDRM 355
Query: 338 SNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVR 397
+N + PG+ + ++ ++ GV M ++ +D A F FG + G +I++GE+K V+
Sbjct: 356 ANLNLEPGDKSFAQLVAGIERGVLMSYNRSWSIDDARNKFQFGCEWGQLIEDGELKGVVK 415
Query: 398 DVGISGNILDTLKEIKAVGRDLKIEFPG--FCGKGQ 431
+ G + + AVG E G +CGKG+
Sbjct: 416 NPNYRGISAQFWRNLSAVGDAGTFEVLGTPYCGKGE 451
>pir||E72342 pmbA-related protein - Thermotoga maritima (strain MSB8)
>gi|4981252|gb|AAD35809.1|AE001743_11 (AE001743)
pmbA-related protein [Thermotoga maritima]
Length = 435
Score = 133 bits (331), Expect = 4e-30
Identities = 111/428 (25%), Positives = 206/428 (47%), Gaps = 28/428 (6%)
Query: 3 DELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFA 61
D L L +K EV+ I F T + NG ++ + + ++VL +G G
Sbjct: 8 DRLFALAKKNGVEVQ---ISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTF 64
Query: 62 STNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLD----VDLEEKTK 117
T L E + A+ +V ++E Y EG ++ + ++ + ++EK
Sbjct: 65 RTQVLENPEKCFEEALSNLQVKDSEEKEYF---FEGGKEYREMETYVGRFEKLSVKEKMD 121
Query: 118 LGLEVEKMIRRDK--IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADI 175
+ + + +D+ + Y D V +KI N+ G +E+ + + A+AR A+
Sbjct: 122 MAKKAHESAAKDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANP 181
Query: 176 MQTYWKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFI 235
W T E ++ + +A+SL+ +++ PSG+ P++M A + +
Sbjct: 182 RSGSWYELARTP-----EDLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMR-NTALLDL 235
Query: 236 HEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRV 295
E + A++V++ S L G +G+++G+ +++ D P P S +DDEG+P
Sbjct: 236 MEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEK 295
Query: 296 EIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEE 355
++++GVL +L++ +T++ + P G+G V +R N + PGE + EE+ +E
Sbjct: 296 FVLENGVLKTFLHNLKTARKEGVEPTGNG------FVGGIRPVNLMLMPGEKSFEELLKE 349
Query: 356 VKFGVYMIGDKG--GQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIK 413
+ GV + +G + +G F AK GY ++ GEI V D+ ISGN LD L++I
Sbjct: 350 MDRGVVITEVEGMHAGANSISGEFSLFAK-GYWVENGEIAHGVEDITISGNFLDLLRKIV 408
Query: 414 AVGRDLKI 421
VG D+K+
Sbjct: 409 LVGNDVKV 416
>pir||D70703 tldD homolog Rv2315c - Mycobacterium tuberculosis (strain H37RV)
>gi|1524285|emb|CAB02052.1| (Z79702) hypothetical
protein Rv2315c [Mycobacterium tuberculosis]
Length = 505
Score = 125 bits (312), Expect = 7e-28
Identities = 122/461 (26%), Positives = 203/461 (43%), Gaps = 35/461 (7%)
Query: 20 DIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSK--LEDTIKMA 76
D+R + +G++E + E+G+ VRV++ G WGFAS +L+ T + A
Sbjct: 36 DLRVHRISTEIIQLRDGELETAVISRELGLAVRVIVAGTWGFASHAELAPDVAAATARHA 95
Query: 77 IKLAKVS---NAEVPLYVGNPV--EGKAIIKQKKDFLDVDLEEKTKLGLEVE-KMIRRDK 130
+ +A V N E PV + + + + D V EK + + +++ D
Sbjct: 96 VHVATVLAALNTERVRLAPEPVYTDAEWVSNYRIDPFGVPASEKIAVLRDYSGRLLDADG 155
Query: 131 IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSA-----DIMQTYWKSFGG 185
I S + + Y ++ GS I R+ L AVA + + M+T
Sbjct: 156 IDHVSASLNAVKEQTFYADTFGSSITQQRVRLLPCLDAVAVDSAAGNFESMRTLAPPTAR 215
Query: 186 TVGWELVESVDFNYWANFISSKALSLLSARSPPS---GEMPIIMDPELAGVFIHEALGHA 242
GWE+V + W + ++ L PS G +++DP + IHE++GHA
Sbjct: 216 --GWEVVAGDEIWNWTDELAQLPSLLAEKVRAPSVMPGPTDLVIDPTNLWLTIHESIGHA 273
Query: 243 VEADSVRQGESILSGM-------IGK-KIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKR 294
E D E+ +G +G + GS + V D T + YDDEG+ +
Sbjct: 274 TEYDRAIGYEAAYAGTSFATPDKLGTLRYGSPVMNVTADRTAEFGLATVGYDDEGVAAQS 333
Query: 295 VEIIKDGVLLNYLNDRETSKALNLV-PNGHGRAQSYAHVPLVRMSNTYIAPG--EWTLEE 351
++++DGV + Y DR + L NG A S HVP+ RM+N + PG + + +
Sbjct: 334 WDLVRDGVFVGYQLDRAFAPRLGEPRSNGCSYADSPHHVPIQRMANISLQPGIEDLSTAD 393
Query: 352 MFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKE 411
+ V G+Y++GDK +D+ +F F + + I+ G++ Q+RDV + D
Sbjct: 394 LIGRVDDGIYIVGDKSWSIDMQRYNFQFTGQRFFRIRGGQLYGQLRDVAYQSSTTDFWNA 453
Query: 412 IKAVGRDLKIEFPGF--CGK---GQWVPVDDGGPHVLVKAI 447
++AVG G CGK GQ V G P L + +
Sbjct: 454 MEAVGGPSTWRMGGAINCGKAQPGQVAAVSHGCPSALFRGV 494
>pir||T36780 hypothetical protein SCI28.10 - Streptomyces coelicolor (fragment)
>gi|5525068|emb|CAB50884.1| (AL096844) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 435
Score = 116 bits (287), Expect = 6e-25
Identities = 110/405 (27%), Positives = 184/405 (45%), Gaps = 38/405 (9%)
Query: 20 DIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSKLEDTIKMA-- 76
D R E + + + + G ++G VRV+ G WGFAS DL+ L+ K+A
Sbjct: 34 DFRLERVRNASWRLRDARPAGSSDTTDLGYAVRVVHGGTWGFASGVDLT-LDAAAKVASQ 92
Query: 77 -IKLAKVSNAEVPLYVGN---------PVEG-KAIIKQKK--DFLDVDLEEKTKLGLEVE 123
+ +AK+S A+V G+ PV K+ I + F D ++ L
Sbjct: 93 AVAMAKLS-AQVIKAAGSDERVELAAEPVHADKSWISAYEIDPFSVPDADKAALLADWSA 151
Query: 124 KMIRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVA-----RSADIMQT 178
+++ D + S K Y ++ G+V R++ L+AV+ D M+T
Sbjct: 152 RLLAADGVDHVDASLLTVHENKFYADTAGTVTTQQRVRLHPVLTAVSVDDSSGEFDSMRT 211
Query: 179 YWKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPP--SGEMPIIMDPELAGVFIH 236
G GWE + +++ + L R+P +G +++DP + IH
Sbjct: 212 LAPPAGR--GWEYLTGTGWDWDSELAEIPELLAEKMRAPSVEAGLYDLVVDPSNLWLTIH 269
Query: 237 EALGHAVEADSVRQGESILSG-------MIGK-KIGSEELTVIDDPTLPGKFGSYVYDDE 288
E++GHA E D E+ +G +GK + GSE + V D T + YDDE
Sbjct: 270 ESIGHATELDRALGYEAAYAGTSFATFDQLGKLRYGSELMNVTGDRTAEHGLATVGYDDE 329
Query: 289 GLPGKRVEIIKDGVLLNYLNDRETSKALNLV-PNGHGRAQSYAHVPLVRMSNTYIA--PG 345
G+ G+ +++KDG L+ Y DR ++ NG A S AHVP+ RM+N + PG
Sbjct: 330 GVEGQSWDLVKDGTLVGYQLDRRIARLTGFERSNGCAYADSPAHVPVQRMANVSLLPDPG 389
Query: 346 EWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEG 390
+ E++ V G+Y++GD+ +D+ +F F + + I+ G
Sbjct: 390 GLSTEDLIGGVDRGIYVVGDRSWSIDMQRYNFQFTGQRFFRIENG 434
>gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis]
Length = 448
Score = 113 bits (280), Expect = 4e-24
Identities = 106/407 (26%), Positives = 185/407 (45%), Gaps = 26/407 (6%)
Query: 20 DIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGWGFA-STNDLSK--LEDTIKMA 76
D+ F + +V G++E V +E IG+R+ I + S++D SK L+ ++ A
Sbjct: 27 DVVFVQGQSQDISVRLGQLEDVGRSEGAEIGLRLFIGHRSASVSSSDFSKEALDALVERA 86
Query: 77 IKLAKVSNAEVPLYVGNP-----VEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKI 131
+ +A+ A + G ++G A + D ++ +L L+ E R
Sbjct: 87 VAMAR--EAPEDRWAGLAPKELLMQGTAPEIESDDGKEIAPAVLRELALKAEDAARSVDG 144
Query: 132 KTSRFSYSDFVTRKIYL--NSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGW 189
T+ S R I+ SEG + S +A MQ + F T +
Sbjct: 145 ITNSEGASASAGRTIFALATSEGFTRGSSSSSYGCSACVIAGQGVNMQRDY-DFHATRYF 203
Query: 190 ELVESVDFNYWANFISSKALSLLSARSPP----SGEMPIIMDPELAGVFIHEALGHAVEA 245
E +++ A I ++A AR P SG+MPII DP + F+ + +
Sbjct: 204 EDLDA------AELIGTRAAERTIARLNPTRIDSGQMPIIFDPRVGSGFLSYLI-QGISG 256
Query: 246 DSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLN 305
++ + S L +GK + +E +T+ +DP S +D EGLP K II G L
Sbjct: 257 GAITRKTSFLLDSLGKPVFNEGITIKEDPWRKRGIASRAFDGEGLPTKPNNIIDKGRLNG 316
Query: 306 YLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGD 365
+L D ++ L + P GH R + P +N Y+ G+ T EE+ ++K G+Y+
Sbjct: 317 WLLDSAAARQLGMTPTGHAR-RGVGGPPSTGTANLYLEAGKVTPEELMSDIKLGIYVTEM 375
Query: 366 KGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEI 412
G V++ G + GA G+II++G++ E V ++ ++GN+ D ++
Sbjct: 376 IGSGVNMITGDYSRGA-SGFIIRDGQLAEPVAEITVAGNLKDIFMQM 421
>pir||B71249 hypothetical protein PH0249 - Pyrococcus horikoshii
>gi|3256638|dbj|BAA29321.1| (AP000001) 426aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 426
Score = 111 bits (276), Expect = 1e-23
Identities = 120/436 (27%), Positives = 198/436 (44%), Gaps = 54/436 (12%)
Query: 9 IEKYSNEVKFMDIRFENTIYTEFT---------VENGKVEGVESNEEVGIGVRVLING-- 57
+EK +K D+ +E IY E + ++E GIG+R+L+ G
Sbjct: 6 VEKLVKILKSFDVEWE--IYWESASSLSLKFRKIRRAEIERSTYRVSSGIGLRILVGGKI 63
Query: 58 -WGFASTNDLSK--LEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQ---KKDFLDVD 111
+ + S +D SK LE +K A+K+AK+S E P + PV GK + K +D+
Sbjct: 64 GFSYLSGSDFSKDELELLVKRALKIAKISGTEYPAF---PVPGKYPSIRGLYDKRIVDLS 120
Query: 112 LEEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTR---KIYLNSEGSVIETVVPRIYFSLSA 168
+E+ + G E+ + F + T + +NS G +E R +L
Sbjct: 121 IEDLSYYGTEL--------VNIEVFGEASIGTSTGIRGIMNSNG--VEGSENRSLLTLGL 170
Query: 169 VA-RSADIMQTYWKSFGGTVGWE-LVESVDFNYWANFISSKALSLLSARSPPSGEMPIIM 226
A +Y KSF E +VE + F S+ A+ E II+
Sbjct: 171 YAYEKGKGSGSYGKSFRVLPDMEKVVEEIKETAMFEFKLSR-----EAKKIEKYEGEIII 225
Query: 227 DPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYD 286
+P+ F+ + + V A SV S +G ++ SE ++IDDPT+ GSY +D
Sbjct: 226 EPKALISFLSIFVPN-VSAKSVYMKRSRFE-RLGVEVSSESFSIIDDPTIDEGLGSYSFD 283
Query: 287 DEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGE 346
EG PG R IIKDGVL ++L+D++ L + G+ +SY+ P++ SN I G
Sbjct: 284 GEGNPGMRKFIIKDGVLTSFLSDQKYGSLLGIGSTGNA-IRSYSSQPIIDSSNLLIPSGN 342
Query: 347 WTLEEMFEEVKFGVYMIGDKGGQ-VDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNI 405
TL+E G+++ G + G F + GYI+ +K ++ I GNI
Sbjct: 343 ETLDE-------GIFIRSVYGEHTANPITGDFSLNIELGYIVNNRGVKPFKGNM-IVGNI 394
Query: 406 LDTLKEIKAVGRDLKI 421
+ LK + ++ ++++I
Sbjct: 395 FEMLKNVTSIDKNVEI 410
>pir||B69009 conserved hypothetical protein MTH1070 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622168|gb|AAB85559.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 430
Score = 110 bits (273), Expect = 3e-23
Identities = 96/414 (23%), Positives = 190/414 (45%), Gaps = 33/414 (7%)
Query: 8 LIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDL 66
+ E Y K +++ + + ++ GK+E + GIG+R+L G GFA T+D
Sbjct: 18 MAEVYIEREKTLEVEIQRDL-----IDFGKIESM-----TGIGIRILKEGRMGFAYTSDP 67
Query: 67 SKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIK-QKKDFLDVDLEEKTKLGLEVEKM 125
++ ++MA + ++++ + P ++ + F D+++E+ ++ +
Sbjct: 68 DGVDVAVRMAAQNLQLADPDENFGFSEPSTYPSVKGIHDRSFDDLEVEDSVEMAGRMINR 127
Query: 126 IRRDKIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGG 185
+ + K + ++ LNSEG + S S+ SA I T ++
Sbjct: 128 VLEEGCKPTSGGFTASRIETFILNSEG---------VEESSSSTGFSAHISVTAGENGMK 178
Query: 186 TVGWELVESVDFNYWANFISSKALSL----LSARSPPSGEMPIIMDPELAGVFIHEALGH 241
T +E S + +++ +A + + RS SG +P ++D A + G
Sbjct: 179 TTAYESDSSCKLDINPEWVAGRACRIARDSMGGRSIESGRIPAVLDYHAAAGLLGTFAG- 237
Query: 242 AVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDG 301
A AD+V++G S+L+ IG ++ E L+V DD TL G GS +D EG P +R +++DG
Sbjct: 238 AFSADNVQRGRSVLADRIGSQVTGEGLSVYDDGTLEGGLGSAPFDGEGTPSQRTALVEDG 297
Query: 302 VLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVY 361
+L Y+++ T+ G+G + Y VP V +N + E+ ++ + G++
Sbjct: 298 ILRGYMHNIYTASKGRADSTGNG-LRGYMEVPAVSTTNFIL---EFDSTVPLDDFR-GIF 352
Query: 362 MIGDKGGQ-VDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKA 414
+ G + +G F A ++ GE V+ +SGNI + + ++ +
Sbjct: 353 VTDVLGAHTANPISGDFSVEANNAFMADSGEF-TPVKKAMLSGNIFELMMKVSS 405
>sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||S13730 pmbA protein -
Escherichia coli >gi|42440|emb|CAA38091.1| (X54152) pmbA
is involved in the production of antibiotic MccB17
[Escherichia coli] >gi|537077|gb|AAA97132.1| (U14003)
pmbA gene product [Escherichia coli]
>gi|1732440|dbj|BAA07915.1| (D44452) TldE protein
[Escherichia coli] >gi|1790682|gb|AAC77192.1| (AE000494)
maturation of antibiotic MccB17, see tld genes
[Escherichia coli K12]
Length = 450
Score = 102 bits (253), Expect = 6e-21
Identities = 110/430 (25%), Positives = 192/430 (44%), Gaps = 27/430 (6%)
Query: 9 IEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLI-NGWGFASTNDLS 67
+E S + ++ T + G+VE VE N + +G+ V N G AS+ DLS
Sbjct: 26 LELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLS 85
Query: 68 K--LEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFL---DVDLEEKTKLGLEV 122
+ T++ A+ +A+ ++ + V + E A D +V +E +L
Sbjct: 86 PQAIARTVQAALDIARYTSPDPCAGVADK-ELLAFDAPDLDLFHPAEVSPDEAIELAARA 144
Query: 123 EKM-IRRDK--IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTY 179
E+ ++ DK T S++ K++ NS G + R S +A M+
Sbjct: 145 EQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDME-- 202
Query: 180 WKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELA-GVFIHEA 238
+ + T+G + + + + + LS LS R + + P+I E+A G+F H
Sbjct: 203 -RDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGH-- 259
Query: 239 LGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEII 298
L A+ SV + + L +GK+I + LT+ + P L S +D EG+ +R +II
Sbjct: 260 LVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDII 319
Query: 299 KDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKF 358
KDG+L +L +++ L L GH + N IA + E+M +E+
Sbjct: 320 KDGILTQWLLTSYSARKLGLKSTGHAGG----------IHNWRIAGQGLSFEQMLKEMGT 369
Query: 359 GVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
G+ + G V G + GA G+ ++ GEI+ V ++ I+GN+ D + I VG D
Sbjct: 370 GLVVTELMGQGVSAITGDYSRGA-AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGND 428
Query: 419 LKIEFPGFCG 428
++ CG
Sbjct: 429 IETRSNIQCG 438
>pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus abyssi (strain
Orsay) >gi|5457662|emb|CAB49153.1| (AJ248283) PMBA
PROTEIN (TLDE PROTEIN) [Pyrococcus abyssi]
Length = 427
Score = 100 bits (247), Expect = 3e-20
Identities = 112/400 (28%), Positives = 190/400 (47%), Gaps = 43/400 (10%)
Query: 37 KVEGVESNEEV--GIGVRVLING---WGFASTNDLSK--LEDTIKMAIKLAKVSNAEVPL 89
KVE + EV GIG+RVL G + + S ++ ++ LE +K A K+AKV+ + +
Sbjct: 40 KVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGS---I 96
Query: 90 YVGNPVEGK-----AIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTR 144
Y G PV K + K ++ EE + G E+ D + S +
Sbjct: 97 YPGFPVPKKFPNVRGLYDDK--IRNLSTEEIVEYGTELV-----DVPPNAEASIGLSTSE 149
Query: 145 KIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWEL-VESV-DFNYWAN 202
+ +NS G+ + F L +S +Y KSF E +E V + W
Sbjct: 150 RGIMNSNGTEGREERTLLAFGLYVFEKSKGT-GSYSKSFRRLPKLESEIEGVREKALWEF 208
Query: 203 FISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKK 262
+SSKA L +GE II++P+ + L + V A +V S + + G +
Sbjct: 209 EMSSKARKL----EKYNGE--IILEPKAVASILSIFLPN-VSARNVYLKRSRFTEL-GIE 260
Query: 263 IGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNG 322
+ S LT+IDDPT+ G SY +D EG PG R IIK+G+L ++L D++ + + G
Sbjct: 261 VASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTG 320
Query: 323 HGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQ-VDIANGSFMFGA 381
+ ++ Y+ P + SN I+PG +E G+++ G G + +G F
Sbjct: 321 NA-SRGYSSQPSISPSNIMISPGN-------DEQDEGIFIRGIYGEHTANSVSGDFSLNV 372
Query: 382 KEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKI 421
GY+++ GEI+ ++ + GN+ + LK + +G++++I
Sbjct: 373 DLGYVVRGGEIRPFKGNM-LVGNVFEMLKNVTNIGKEIEI 411
>pir||S77207 hypothetical protein slr1435 - Synechocystis sp. (strain PCC 6803)
>gi|1652621|dbj|BAA17541.1| (D90907) PmbA protein
[Synechocystis sp.]
Length = 427
Score = 99.1 bits (243), Expect = 9e-20
Identities = 97/394 (24%), Positives = 180/394 (45%), Gaps = 31/394 (7%)
Query: 34 ENGKVEGVESNEEVGIGVRVLINGW-GFASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVG 92
E +++ +ES+E G+ +R+ NG G A + E ++ A+ LA ++ P +
Sbjct: 35 EANRLKQLESSESEGVALRLWKNGQAGLAVAYGPVEPEILVEKALALAALNPPNPPRFTA 94
Query: 93 NPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIK---TSRFSYSDFVTRKIYLN 149
+ + + + DV +E+ G +R + + + + S TR I N
Sbjct: 95 PRQDYRESLGE-----DVSVEQLIDWGQTAIASLRSEFAEVLCSGELACSTDSTRLI--N 147
Query: 150 SEGSVIETVVPRI--YFSLSAVARSADIMQTY--WKSFGGTVGWELVESVDFNYWANFIS 205
SEG + YF + + R D + Y + G T ++VE+ +
Sbjct: 148 SEGLDCTWTERSLSYYFGVEWI-RGEDFLAIYDGEQCRGQTNVGQVVEN---------LR 197
Query: 206 SKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGS 265
+ L + + G+MPI++ A + + + +G A+ V + S + +G+ +
Sbjct: 198 QRLLWVEVNQQIQGGKMPILLTSGAASL-LWDTVGEALHGQRVAEDSSPWAEKLGQTVAI 256
Query: 266 EELTVIDDPT-LPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHG 324
EEL + DPT +P +DDEG +++ +IK+G + + D ET++ L G+G
Sbjct: 257 EELNISQDPTAIPF---DCPFDDEGSRTQKLALIKNGKIAQFYTDHETAEKLGTTTTGNG 313
Query: 325 RAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEG 384
S P + N I PG + +++ +++ G+ + GG DI +G F G
Sbjct: 314 FRPSLGSAPQPGLVNMLITPGTASFDQLLKKLGNGLVVDQILGGGADI-SGDFSINVDLG 372
Query: 385 YIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
Y ++ GEI +V+D +SGNI + L +I A+G D
Sbjct: 373 YRVQNGEITGRVKDTMVSGNIYELLNQIIALGSD 406
>pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9657118|gb|AAF95676.1| (AE004322) pmbA
protein [Vibrio cholerae]
Length = 447
Score = 96.7 bits (237), Expect = 5e-19
Identities = 102/401 (25%), Positives = 183/401 (45%), Gaps = 40/401 (9%)
Query: 37 KVEGVESNEEVGIGVRVLINGW-GFASTNDLSK--LEDTIKMAIKLAKVSNAEVPLYVGN 93
+VE VE N + +G+ V G AST+DLS+ + T+ A+ +A+ ++A+ Y G
Sbjct: 50 EVENVEFNSDGALGITVYRGQRKGSASTSDLSEKAIRQTVLAALDIAQYTSADP--YAG- 106
Query: 94 PVEGKAIIKQKKDFLDV--------DLEEKTKLGLEVEKMIRRDKIKTSRF-SYSDFVTR 144
P + ++++ D LD+ D+ + + E + KIK S SY
Sbjct: 107 PAPKELMVQEIPD-LDLFHPDEPNPDVAAQIAIAAERAALGYSKKIKQSDGGSYDSHYGV 165
Query: 145 KIYLNSEGSVIETVVPRIYFSLSAVA--RSADIMQTYWKSFGGTVG--WELVESVDFNYW 200
++Y NS G + R S S + R+ ++ + Y + W ESV
Sbjct: 166 RVYGNSHGLLASYASSRHSISCSVIGEGRNGEMERDYSYTVARHRDDLWT-PESVGLQAA 224
Query: 201 ANFISSKALSLLSARSPPSGEMPIIMDPELA-GVFIHEALGHAVEADSVRQGESILSGMI 259
N +S L + +G+ P++ ++A G+ H + A+ ++ + S L +
Sbjct: 225 ENTVSR-----LDPQKLKTGQFPVMFAADVATGLIGHLVM--AISGGNLYRKSSFLLDHL 277
Query: 260 GKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLV 319
GK I + + P + S +D EG+ + +EII DGVL YL ++ +N+
Sbjct: 278 GKTILPTWFNISERPHVMRGLASSPFDSEGVRTQDLEIITDGVLATYLLTSYAARKMNMT 337
Query: 320 PNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMF 379
P GH + N Y+ ++M +E+ G+ + G V++ G +
Sbjct: 338 PTGHAGG----------IHNWYVKSTGQNYQQMLKELGTGLLVTEVMGQGVNVVTGDYSR 387
Query: 380 GAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
GA G+ ++ GEIK V ++ I+GN+ L++I AVG D++
Sbjct: 388 GA-AGFWVENGEIKYPVSEITIAGNLKQMLQQIVAVGSDIE 427
>sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C64186 pmbA protein -
Haemophilus influenzae (strain Rd KW20)
>gi|1574709|gb|AAC22807.1| (U32795) pmbA protein (pmbA)
[Haemophilus influenzae Rd]
Length = 451
Score = 96.3 bits (236), Expect = 6e-19
Identities = 94/393 (23%), Positives = 190/393 (47%), Gaps = 24/393 (6%)
Query: 37 KVEGVESNEEVGIGVRVLINGW-GFASTNDLSK--LEDTIKMAIKLAKVSNAE--VPLYV 91
++E VE + +G+ V + G AST+DLS+ +++ ++ A+ +AK ++ + L
Sbjct: 54 EIENVEFTNDGALGISVYMGQQKGNASTSDLSESAIKNAVEAALAIAKYTSPDDCTGLAD 113
Query: 92 GNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKM-IRRDK--IKTSRFSYSDFVTRKIYL 148
+ + A + D+D+++ T+L L+ E+ ++ D+ I ++ S++ K+Y
Sbjct: 114 KDLMAFDAPDLELYHAADIDVDKATELALQAEQAALQADERIINSNGASFNSHTGVKVYG 173
Query: 149 NSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWELVESVDFNYWANFISSKA 208
NS G + + R S S + D ++ ++ T+ E + + + K
Sbjct: 174 NSHGMLQSYLSSRYSLSCSVIGGVEDALENDYEY---TISREFDKLQSPIWVGENCAKKV 230
Query: 209 LSLLSARSPPSGEMPIIMDPELA-GVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEE 267
+S L+ + + E+P+I ++A G+ H A A+ S+ + S L +GK++ +
Sbjct: 231 VSRLNPQKLSTREVPVIFLNDVATGIISHFAA--AISGGSLYRKSSFLLDHLGKQVLPDW 288
Query: 268 LTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQ 327
++ + P L + S +D EG+ + EI+++G+L YL + K L + GH
Sbjct: 289 FSISERPHLLRRLASTPFDSEGVRTQDREIVENGILQTYLVTSYSGKKLGMSSTGHAGG- 347
Query: 328 SYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYII 387
H LV+ + T L + ++ G+ + G V+I G + GA G+ +
Sbjct: 348 --IHNWLVKPNLT------GGLTALLRQMGTGLLVTDVMGQGVNIVTGDYSRGA-SGFWV 398
Query: 388 KEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
+ GEI+ V ++ I+G + D LK + AV D++
Sbjct: 399 ENGEIQYPVAEITIAGQLQDMLKNMLAVADDIE 431
>pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9950709|gb|AAG07860.1|AE004861_1 (AE004861)
PmbA protein [Pseudomonas aeruginosa]
Length = 449
Score = 94.0 bits (230), Expect = 3e-18
Identities = 95/406 (23%), Positives = 180/406 (43%), Gaps = 41/406 (10%)
Query: 32 TVENGKVEGVESNEEVGIGVRVLIN---GWGFASTNDLSKLEDTIKMAIKLAKVSNAEVP 88
+V G+VE VE N + G G+ + G S + + +T+ A+ +A+ ++ +
Sbjct: 48 SVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAALAIARHTSEDEC 107
Query: 89 LYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTR---- 144
+ + ++ ++DL L E + + R + + F+ VT+
Sbjct: 108 AGLADAA------LMARELPELDLYHPWSLSPE-QAVERALACEAAAFAADKRVTKADGT 160
Query: 145 --------KIYLNSEGSVIETVVPRIYFSLSAVARSADIMQT-YWKSFGGTVGWELVESV 195
++Y NS G + R S +A MQ YW G L +
Sbjct: 161 TLNTHQGCRVYGNSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRR-GEALASAE 219
Query: 196 DFNYWANFISSKALSLLSARSPPSGEMPIIMDPELA-GVFIHEALGHAVEADSVRQGESI 254
A + +A S L AR + E+P++ PE+A G+F H LG A+ S+ + S
Sbjct: 220 SIGRRA---AERAASRLGARPVQTAEVPVLFAPEIAVGLFGH-FLG-AISGGSLYRKSSF 274
Query: 255 LSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSK 314
L G +G+++ E L++ + P L G GS +D +GL +++G L++Y+ + +
Sbjct: 275 LEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGR 334
Query: 315 ALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIAN 374
L L + + N +++ G+ + ++ G+ + G V++
Sbjct: 335 KLGLPSTANAGG----------VHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVT 384
Query: 375 GSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLK 420
G + GA GY ++ GEI+ V++V I+ N+ D + I AVG+D++
Sbjct: 385 GDYSRGAA-GYWVENGEIQFPVQEVTIAANLRDLFRRIVAVGKDIE 429
>sp|P57191|PMBA_BUCAI PMBA PROTEIN HOMOLOG >gi|10038774|dbj|BAB12809.1| (AP001118) pmbA
protein [Buchnera sp. APS]
Length = 446
Score = 92.8 bits (227), Expect = 7e-18
Identities = 97/429 (22%), Positives = 197/429 (45%), Gaps = 27/429 (6%)
Query: 1 MIDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLIN-GWG 59
+++ ++N ++ N +++ + TI V N VE VE N + G+ + V G
Sbjct: 14 LVNTVKNTLKLSKNINASVEVFIKKTIGISVNVRNNVVENVEFNSDGGLFITVYNKFSKG 73
Query: 60 FASTNDLS--KLEDTIKMAIKLAKVSNAEVPLYVGNP-VEGKAIIKQKKDFL---DVDLE 113
S+ D S +++ + +AI ++K S+++ + G P ++ + D + ++E
Sbjct: 74 SVSSKDFSIKNIKNMLDIAINISKYSSSD--FFSGLPDIKFLCFHSMELDLFHPWEFNIE 131
Query: 114 EKTKLGLEVEKM-IRRDK-IKTSRFSY-SDFVTRKIYLNSEGSVIETVVPRIYFSLSAVA 170
K+ + EK DK I S S+ + T ++ NS G + + R +A
Sbjct: 132 NAIKMSILSEKSAFESDKRIVNSEGSFLNSHTTINVFGNSLGVLEKYKSTRYSNYTCMIA 191
Query: 171 RSADIMQTYWKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPEL 230
+ + MQ + F ++ + + + + +A+S L +R + PII E+
Sbjct: 192 KDKNSMQ---RDFDYSLSRRIDDLIKPEILGQKTAKRAISRLGSRKIQTMRSPIIFSSEI 248
Query: 231 AGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGL 290
+ +F L A+ D+V Q + L + KI + L + ++P L GS +D+EG+
Sbjct: 249 SHMFFSH-LASAISGDNVYQKSTFLINDLKMKIFPDWLDIEENPHLKRGLGSKPFDNEGV 307
Query: 291 PGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLE 350
+ IIK G+L +L + ++ L L G+ + N ++ + E
Sbjct: 308 ATEIKYIIKAGILQTWLLNCYNARKLKLDSTGNCGG----------IHNWLVSNQNISFE 357
Query: 351 EMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLK 410
E+ +++ G+ + G VDI NG++ GA G+ +++G+I + ++ ISGN+ +
Sbjct: 358 ELLKKMDQGILVTELMGQGVDIINGNYSRGA-VGFWVEKGKISYPINEITISGNLRNMWN 416
Query: 411 EIKAVGRDL 419
I ++ D+
Sbjct: 417 NIVSISSDV 425
>pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii
>gi|3257260|dbj|BAA29943.1| (AP000003) 443aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 443
Score = 89.3 bits (218), Expect = 8e-17
Identities = 64/212 (30%), Positives = 114/212 (53%), Gaps = 17/212 (8%)
Query: 214 ARSP---PSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTV 270
AR+P P G +I DP LA + +G A A +V G S + + +K+ SE +T+
Sbjct: 212 ARNPEQGPEGRFDVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEIVTI 270
Query: 271 IDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYA 330
D LP + + +DDEG+P K +I G+L YL + +K +GR ++ A
Sbjct: 271 KDVGNLPNGYATRKFDDEGVPTKETILIHKGILKTYLFNTSLAKK-------YGR-ETTA 322
Query: 331 HVPLV--RMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQV-DIANGSFMFGAKEG-YI 386
+ L+ R N + PG++T +E+F+EVK G+Y+ + + G F ++G ++
Sbjct: 323 NAGLIAPRAWNIVLEPGDYTKDELFQEVKKGIYITNVWYTRFQNYMTGDFSTIPRDGIFL 382
Query: 387 IKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
I+ GE+K +R++ +S N+L L+ + A+ ++
Sbjct: 383 IENGELK-PIRNIRVSDNMLRILQNVVALSKE 413
>pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (strain Orsay)
>gi|5458676|emb|CAB50163.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 443
Score = 87.8 bits (214), Expect = 2e-16
Identities = 63/212 (29%), Positives = 115/212 (53%), Gaps = 17/212 (8%)
Query: 214 ARSP---PSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTV 270
AR+P P G+ +I DP LA + +G A A +V G S + + +K+ SE +T+
Sbjct: 212 ARNPEQGPEGKFDVIFDP-LAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTI 270
Query: 271 IDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYA 330
D LP +G+ +DDEG+P + +I+ G L YL + +K +G+ ++ A
Sbjct: 271 KDIGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKK-------YGK-ETTA 322
Query: 331 HVPLV--RMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQV-DIANGSFMFGAKEG-YI 386
+ L+ R N + PG++T +E+F+EVK G+Y+ + + G F ++G ++
Sbjct: 323 NAGLISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFL 382
Query: 387 IKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
I+ GE+K +R++ +S N+L L+ I + ++
Sbjct: 383 IENGELK-PIRNIRVSDNMLRILQNIVGLTKE 413
>pir||D81151 pmbA protein NMB0839 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7226074|gb|AAF41250.1| (AE002437) pmbA
protein [Neisseria meningitidis MC58]
Length = 443
Score = 83.9 bits (204), Expect = 3e-15
Identities = 92/413 (22%), Positives = 179/413 (43%), Gaps = 41/413 (9%)
Query: 23 FENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGW-GFASTNDLSK--LEDTIKMAIKL 79
F ++ +V G++E +E ++ + + V + G AST D S+ L+DT+K AI +
Sbjct: 33 FSESLGQSVSVRLGEIEQIEFQQDKSLDITVYVGKRKGRASTADFSEKALQDTVKAAIDI 92
Query: 80 AKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGL----------EVEKMIRRD 129
A+ + + + + I + + DL+ + +GL E E++ +
Sbjct: 93 ARHTAEDGCAGLADACLMAKHIGDPDLYHEWDLDTEAAVGLAKQCEQAALNEDERIENSE 152
Query: 130 --KIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQT-YW-KSFGG 185
++T + Y +Y N+ G S S VA + MQ YW S
Sbjct: 153 GAAVQTGHYQY-------VYGNTHGFAAHRQGTHHSISCSVVAADENGMQRDYWYDSACR 205
Query: 186 TVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEA 245
+ E++ + + L L +RS P+G P++ D ++G I +G A+
Sbjct: 206 HPDMDSPETI-----GQTAARRTLRRLGSRSIPTGSYPVLFDTTVSGGLIGHLVG-ALSG 259
Query: 246 DSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLN 305
++ + S L IGKK+ + L + ++P +P F S +D EG+ +I++G++
Sbjct: 260 GALYRQSSFLIDSIGKKVLPDFLNLREEPHIPRSFRSSYFDAEGVATAPRFVIQNGIVEG 319
Query: 306 YLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGD 365
Y +++ L + G+ AH N Y+ T ++ +E+ G+ +
Sbjct: 320 YFLSSYSARKLGMQTTGNAGG---AH-------NLYLNHTHETQSDLLKEMGTGLLVTEL 369
Query: 366 KGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
G + G + GA G+ ++ G I V ++ ++G + D ++I V D
Sbjct: 370 MGQGANTITGDYSRGA-AGFWVENGVIAYPVHEITVAGRLQDMYRDIVGVADD 421
>pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii
>gi|3257987|dbj|BAA30670.1| (AP000006) 445aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 445
Score = 83.5 bits (203), Expect = 5e-15
Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 2/199 (1%)
Query: 221 EMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKF 280
E P+I P H AL A + + + + L+ +G+KI S+ +T+ DD
Sbjct: 222 EAPVIFSPWAISGLFHYALFPAFSGERLIKKTTPLADKVGEKIASDVITIYDDTFHELSV 281
Query: 281 GSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNT 340
+ D EG+P ++ +I++GV ++ D +K GHG+ + +++
Sbjct: 282 VKAIADGEGVPTRKTMLIENGVFKGFIWDNYWAKVYGTESTGHGQRDWRGGGVTIGLNSA 341
Query: 341 YIAPGEWTLEEMFEEVKFGVYMIGDKGG-QVDIANGSFMFGAKEGYIIKEGEIKEQVRDV 399
I G+ +LEEM +++K G + G +G + NG+F A Y+I++GEI +
Sbjct: 342 VIENGKRSLEEMIQDIKHGYLVEGVQGAHSSNPDNGNFAISANPAYLIEDGEIAGSTVFL 401
Query: 400 GISGNILDTLKEIKAVGRD 418
++ NI + LK+ V ++
Sbjct: 402 -VASNIYELLKQASEVSKE 419
>pir||H81869 hypothetical protein NMA1048 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379746|emb|CAB84314.1|
(AL162755) hypothetical protein NMA1048 [Neisseria
meningitidis Z2491]
Length = 443
Score = 80.8 bits (196), Expect = 3e-14
Identities = 90/413 (21%), Positives = 177/413 (42%), Gaps = 41/413 (9%)
Query: 23 FENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGW-GFASTNDLSK--LEDTIKMAIKL 79
F ++ +V G++E +E ++ + + V + G A T D S+ L DT++ A +
Sbjct: 33 FSESLGQSVSVRLGEIEQIEFQQDKSLDITVYVGKRKGRAGTADFSEQALRDTVRAAADI 92
Query: 80 AKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGL----------EVEKMIRRD 129
A+ + + + +P I + + DL+ + +GL E E++ +
Sbjct: 93 ARHTAEDGCAGLADPELMAQHIGDPDLYHEWDLDTEAAVGLAKQCEQAALNEDERIENSE 152
Query: 130 --KIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQT-YW-KSFGG 185
++T + Y +Y N+ G S S VA + MQ YW S
Sbjct: 153 GAAVQTGHYQY-------VYGNTYGFAAHRQSTHHSISCSVVAADENGMQRDYWYDSACR 205
Query: 186 TVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEA 245
+ E++ + + L L +RS P+G P++ D ++G I +G A+
Sbjct: 206 HPDMDSPETI-----GQTAARRTLRRLGSRSIPTGNYPVLFDTTVSGGLIGHLVG-ALSG 259
Query: 246 DSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLN 305
++ + S L IGKK+ + L + ++P +P F S +D EG+ +I++G++
Sbjct: 260 GALYRQSSFLIDSIGKKVLPDFLNLREEPHIPRSFRSSYFDAEGVATAPRFVIQNGIVEG 319
Query: 306 YLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGD 365
Y +++ L + G+ AH N Y+ T ++ +E+ G+ +
Sbjct: 320 YFLSSYSARKLGMQTTGNAGG---AH-------NLYLNHTHETQSDLLKEMGTGLLVTEL 369
Query: 366 KGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRD 418
G + G + GA G+ ++ G I V ++ ++G + D ++I V D
Sbjct: 370 MGQGANTITGDYSRGA-AGFWVENGVIAYPVHEITVAGRLQDMYRDIVGVADD 421
>pir||S75708 hypothetical protein sll0887 - Synechocystis sp. (strain PCC 6803)
>gi|1001203|dbj|BAA10443.1| (D64003) hypothetical
protein [Synechocystis sp.]
Length = 446
Score = 80.4 bits (195), Expect = 4e-14
Identities = 95/411 (23%), Positives = 178/411 (43%), Gaps = 30/411 (7%)
Query: 33 VENGKVEGVESNEEVGIGVRVLINGWGFASTNDLSKLEDTIKMAIKLAKVSNAEVPLY-- 90
V++G+ + VE++ + VRV W ++ D + I LA + AE +
Sbjct: 37 VDSGEPKQVEASNRASVIVRV----WNEKGLVGVTSTTDLDQAGISLALETAAEASAFGI 92
Query: 91 VGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIKTSRF---------SYSDF 141
N + + + D+ E +G + +++ ++ + S+
Sbjct: 93 TDNIPDFSPEAQVPIGGAENDVAEPAPMGDLITTLVKAEQDLLASHPAITGVPYNGLSEQ 152
Query: 142 VTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWELVESVDFNYWA 201
T + YLNS G+ + R Y S+ +R+ + + + +L S+D +
Sbjct: 153 TTERFYLNSAGA--KRYECRSYASIYLYSRAEQEGKKPRSAGEMKISRDLA-SLDIDGCL 209
Query: 202 NFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSG-MIG 260
+ K LS L R P+G+ ++ A + + A + A S+ +S+ + +G
Sbjct: 210 QTVKEKTLSHLDYRPIPTGKYTVVFSAR-AFLSLLGAFSNLYNAQSILDKQSLATKETLG 268
Query: 261 KKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVP 320
I SE L V DD PG + +D EG P +RV+IIK+GVL L+ T+K + P
Sbjct: 269 TAIASELLCVSDDALHPGNISAERFDGEGTPTRRVDIIKNGVLTGLLHSAGTAKRFDTQP 328
Query: 321 NGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMF--EEVKFGVYM--IGDKGGQVDIANGS 376
GH S V ++ Y E T E+ + ++ + VY+ + V+ GS
Sbjct: 329 TGHANIGSKITVG----AHFYHVYSEKTAEKSYSLDQAENVVYIDKLQALHAGVNSLQGS 384
Query: 377 FMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGFC 427
F +G+++ +GE K+ + ++G+ L+ LK I + + ++ G C
Sbjct: 385 FSL-PFDGWLVNKGE-KQSIDAATVAGDFLEVLKTIVYLEPEAEVTPGGVC 433
>dbj|BAB05756.1| (AP001514) unknown conserved protein in others [Bacillus
halodurans]
Length = 419
Score = 79.6 bits (193), Expect = 7e-14
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 3/182 (1%)
Query: 237 EALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVE 296
+ALG+ AD++ + L M GK+I S T+ D LP S +DDEG+ + +
Sbjct: 216 KALGNLFIADTIDRSVPALWKMKGKRIASTVFTLKDQAHLPQSIASSPFDDEGVLSQDIT 275
Query: 297 IIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEV 356
I+ G + L+ ++ + + NG +S+ P ++ +N + PG + E + +E+
Sbjct: 276 ILAKGTFQHALHSITSASKHHQISNGRAYRKSFDLAPKIQYTNLLVEPGTRSTENLLKEM 335
Query: 357 KFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVG 416
K G + GQ I G MF A +G+ I EG+ E++ V I + L+ I AV
Sbjct: 336 KTGFLINRSFDGQ--IIAGRLMFKA-DGWKIHEGQRVERISRVRIEAPLFQMLRSIVAVA 392
Query: 417 RD 418
+D
Sbjct: 393 KD 394
>pir||B75180 antibiotic/peptide maturation related protein PAB1956 - Pyrococcus
abyssi (strain Orsay) >gi|5458031|emb|CAB49521.1|
(AJ248284) ANTIBIOTIC/PEPTIDE MATURATION related protein
[Pyrococcus abyssi]
Length = 448
Score = 76.9 bits (186), Expect = 4e-13
Identities = 92/426 (21%), Positives = 175/426 (40%), Gaps = 19/426 (4%)
Query: 2 IDELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVE-GVESNEEVGI--GVRVLINGW 58
++EL EK+ +E++ + R E VE ++ G E+V I G++ G
Sbjct: 7 MEELIKYGEKFFDELEIVVRRSRGI---EVNVELNEISMGATRIEKVTIIRGIKDKRVGI 63
Query: 59 GFASTNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQK--KDFLDVDLEEKT 116
T+ +++ I+ A K+AK++ + + P GK K K +D V E
Sbjct: 64 AIIDTDSKEEVKKAIEEAAKMAKLNTPDEK-WSSLPSPGKYREKPKVSEDLKSVSTETLV 122
Query: 117 KLGLEVEKMIRRD--KIKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSAD 174
+ K+ R + + S NS+G + + V +
Sbjct: 123 EFVTRGIKLARESDPNVTVAGGSAGTSWAEVEIFNSQGINVSQEFGSAHIFFEFVGKKEG 182
Query: 175 IMQTYWKSFGGTVGWEL-VESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGV 233
++ F EL VE V N + + + + E +I P
Sbjct: 183 VVTPGIFDFDAKDNLELDVEGV-----VNRGLERVKWAYNVKEAKNEETTVIFGPWAISG 237
Query: 234 FIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGK 293
+ AL A + + + + L+ +G+K+ S+ +T+ DD + D EG+P +
Sbjct: 238 LLSYALFPAFSGERLVKKTTPLADKVGEKVASDVITIYDDTFHELSIAKAIADGEGVPTR 297
Query: 294 RVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMF 353
+V +I++G+ ++ D +K GHG+ + +++ I G+ L E+
Sbjct: 298 KVTLIEEGIFKGFIWDNYWAKVYGTESTGHGQRDWRGGGVSIGLNSAVIENGKRELSEII 357
Query: 354 EEVKFGVYMIGDKGG-QVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEI 412
E+K G + G +G + NG+F A Y+I++GE+ + I+GN+ + LK+
Sbjct: 358 GEIKHGYLVEGLQGAHSSNPDNGNFAVTANPAYLIEDGEVVGSTVFL-IAGNVYELLKQA 416
Query: 413 KAVGRD 418
V +D
Sbjct: 417 TEVSKD 422
>pir||I64173 hypothetical protein HI1653 - Haemophilus influenzae (strain Rd
KW20)
Length = 122
Score = 76.5 bits (185), Expect = 6e-13
Identities = 43/118 (36%), Positives = 70/118 (58%), Gaps = 3/118 (2%)
Query: 336 RMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKEGYIIKEGEIKEQ 395
RM+NTY+ G+ +++ VK G+Y GGQVDI +G F+F E Y+I++G+I +
Sbjct: 3 RMTNTYMLAGQSQFDDLIASVKQGIYAPHFGGGQVDITSGKFVFSTSEAYLIEKGKITKP 62
Query: 396 VRDVGISGNILDTLKEIKAVGRDLKIEFP-GFCGK-GQWVPVDDGGPHVLVKAI-VGG 450
V+ + G+ ++ +++I V +++ G CGK GQ VPV G P + + I VGG
Sbjct: 63 VKGATLIGSGIEVMQKISMVADKSELDLGIGVCGKEGQSVPVGVGQPALKIDEITVGG 120
>sp|Q57684|Y231_METJA HYPOTHETICAL PROTEIN MJ0231 >gi|2128001|pir||H64328 hypothetical
protein MJ0231 - Methanococcus jannaschii
>gi|1590966|gb|AAB98219.1| (U67479) pmbA protein (pmbA)
[Methanococcus jannaschii]
Length = 416
Score = 75.7 bits (183), Expect = 1e-12
Identities = 103/414 (24%), Positives = 179/414 (42%), Gaps = 31/414 (7%)
Query: 4 ELRNLIEKYSNEVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLINGW-GFAS 62
+L LI+ E ++ F + ++ V+ ++ GIGVRV+ +G GFA
Sbjct: 2 DLEKLIKIGEKEGFETEVLFVKSYEVSVDLDGKSVDSFQTGISYGIGVRVIKDGKVGFAY 61
Query: 63 TNDLSKLEDTIKMAIKLAKVSNAEVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEV 122
N E+ + A+K + E K + K+ LD+D EEK LE
Sbjct: 62 ANKFD--ENIVYKAMKNLVEDKYTEFAHPQKYKEPKGMFY--KEILDLD-EEKL---LED 113
Query: 123 EKMIRRDKIKTSRFSYSDFVTRKI----YLNSEGSVIETVVPRIYFSLSAVARSADIMQT 178
+R + + S V++++ +NS G +E YFS + IM
Sbjct: 114 LITMRDIALDNNAIVLSGGVSKEVGYARLINSNGVDVEE--QDTYFSAAI-----SIMYD 166
Query: 179 YWKSFGGTVGWELVESVDFNYWANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEA 238
S+ + + + +Y A ++ K+ + + S + I++ P +
Sbjct: 167 GETSYECRTRHNIFDVEEISYRALDLAKKSANGKAI----SYKGNIVLSPRALYDLLSYT 222
Query: 239 LGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEII 298
L A A++V++ S+L G IG++I E +T+IDD TL S D EG ++ ++
Sbjct: 223 LMPAFSAENVQRDRSVLKGKIGEQIFGENITIIDDGTLDYALYSSKCDGEGTATQKTVLV 282
Query: 299 KDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKF 358
++GVL NYL D + + G+ ++ Y +P V +N I + +L++ F+E
Sbjct: 283 ENGVLKNYLYDIKRANREGKTSTGNA-SRGYRSLPYVSPTNFIIKETKNSLDD-FDEY-- 338
Query: 359 GVYMIGDKGGQV-DIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKE 411
VY+ G G + G F + Y K G+I R + GNI + KE
Sbjct: 339 -VYINGVIGSHTSNPITGDFAVEIQNSYYYKNGKIIPIKRGM-FGGNIFEMFKE 390
>emb|CAC11943.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 430
Score = 74.9 bits (181), Expect = 2e-12
Identities = 58/201 (28%), Positives = 96/201 (46%), Gaps = 9/201 (4%)
Query: 220 GEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKKIGSEELTVIDDPTLPGK 279
G +I+ P AG I +A A +V G S L +G++I + + + DDPT
Sbjct: 208 GHYDVILAPMAAGNIITSG-SYAFSAHTVISGLSFLQDSMGRQIAAPMVNLYDDPTDTAG 266
Query: 280 FGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGHGRAQSYAHVPLVRMSN 339
V+D+EG RV II+ GVL YL+ T++ +N G+ A +
Sbjct: 267 MAYRVFDEEGTATSRVPIIEHGVLNTYLHSTSTARYMNTETTGN------AGIISPEAWQ 320
Query: 340 TYIAPGEWTLEEMFEEVKFGVYMIGDKGGQV-DIANGSFMFGAKEG-YIIKEGEIKEQVR 397
+ G+ + EE+ + + GV++ + D NG F ++G Y I+ GEI E
Sbjct: 321 LEMDGGDASAEELISDTREGVFIRNSWYLRFQDYRNGVFSTVPRDGVYYIRNGEIAEAWD 380
Query: 398 DVGISGNILDTLKEIKAVGRD 418
+ IS +I + LK+I A+ ++
Sbjct: 381 GIRISDSIPEILKKISALSKE 401
>gi|11498264 antibiotic maturation protein (pmbA) [Archaeoglobus fulgidus]
>gi|7429843|pir||H69331 hypothetical protein AF0656 -
Archaeoglobus fulgidus >gi|2649962|gb|AAB90584.1|
(AE001059) antibiotic maturation protein (pmbA)
[Archaeoglobus fulgidus]
Length = 391
Score = 74.5 bits (180), Expect = 2e-12
Identities = 93/394 (23%), Positives = 166/394 (41%), Gaps = 57/394 (14%)
Query: 33 VENGKVEGVESNEEVGIGVRVLINGW-GFASTNDLSKLEDTIKMAIKLAKVSNAEVPLYV 91
+E G+++ V S + RV++ G GFAS S ++ + +A K+A++S E+ +
Sbjct: 17 IEAGRLKIVSSYVDKSFSARVILKGRVGFASA---STRDEALSLAEKIARISEDELEDFP 73
Query: 92 GN-PVEGKAIIKQKKDFLDVDL--EEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTRKIYL 148
P K I ++ + D +L EE +L VEK
Sbjct: 74 NEKPASVKGIYDKRVEEADSELIMEEFERLRSAVEKA----------------------- 110
Query: 149 NSEGSVIETVVPRIY----FSLSAVARSADIMQTYWKSFGGTVGWELVES----VDFNYW 200
N + IE V + F L + +S F G +E+ S +D
Sbjct: 111 NIASATIEHAVEEVRITNSFGLDSREKSTSSSMIVEAVFEGGSAYEVCGSRSIELDIEGA 170
Query: 201 ANFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIG 260
A A+ A G +I+ P + L ++ A++V +G S++ +G
Sbjct: 171 AKKAEELAVDSAKAIKIEGGTYDVILQPIAVHQLLSNTLYPSLSAENVEKGRSVIR--LG 228
Query: 261 KKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVP 320
+ G +TVIDDPT+ G S +DDEG+ ++ +I +GV+ +Y D + SK +
Sbjct: 229 DEFG--RITVIDDPTVEGGLMSCGFDDEGVSARKTFLIDNGVVRSYYTDWKHSKKYGVTG 286
Query: 321 NGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVY-MIGDKGGQVDIANGSFMF 379
NG +S P+V SN + +++ ++ ++ +IG + +G F
Sbjct: 287 NGFRLEESSFPAPMV--SNVVL-----EVDDADDDNCLTIHSLIGSH--TANPVSGDFSL 337
Query: 380 GAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIK 413
Y GE + V+ I GN+ + LK+++
Sbjct: 338 ECNNAYF---GE--KAVKGAMIYGNVFELLKKVE 366
>gb|AAF65318.1|AF234655_1 (AF234655) LmbIH [Streptomyces lincolnensis]
Length = 199
Score = 69.5 bits (167), Expect = 8e-11
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
Query: 264 GSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNGH 323
GSE ++V+ DPT G G+ +DDEG P +I+ G L+ L+ R + A
Sbjct: 1 GSEHVSVVADPTGTGA-GATPWDDEGTPTAAAPLIERGTLVGLLSSRTVAAASGRPLTAA 59
Query: 324 GRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQVDIANGSFMFGAKE 383
G A +PLVRM+N + PG T +++ + + G+ + G+ +D F F +
Sbjct: 60 GARAEGAALPLVRMTNVNLLPGSGTEQDLLDTMGEGLLLTGNHSFSIDDHREVFHFTCEL 119
Query: 384 GYIIKEGEIKEQVRDVGISGNILDTLKEIKAVG--RDLKIEFPGFCGKGQ 431
+ I+ G+ E +R G LD + V + FC KGQ
Sbjct: 120 AWRIRGGQRVEPLRGPRYHGRTLDFWRSCAHVAGPEAWTMHSVTFCMKGQ 169
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.138 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171487902
Number of Sequences: 2977
Number of extensions: 7576424
Number of successful extensions: 18092
Number of sequences better than 1.0e-10: 58
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 17930
Number of HSP's gapped (non-prelim): 60
length of query: 452
length of database: 189,106,746
effective HSP length: 57
effective length of query: 395
effective length of database: 154,992,987
effective search space: 61222229865
effective search space used: 61222229865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)