BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0155 (tldE) DE:PMBA PROTEIN (TLDE PROTEIN)
(427 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus aby... 846 0.0
pir||B71249 hypothetical protein PH0249 - Pyrococcus horikoshii ... 571 e-162
sp|Q57684|Y231_METJA HYPOTHETICAL PROTEIN MJ0231 >gi|2128001|pir... 180 3e-44
pir||B69009 conserved hypothetical protein MTH1070 - Methanobact... 168 1e-40
gi|11498264 antibiotic maturation protein (pmbA) [Archaeoglobus ... 162 7e-39
pir||B75180 antibiotic/peptide maturation related protein PAB195... 120 4e-26
sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir... 113 3e-24
emb|CAB57641.1| (Y18930) hypothetical protein [Sulfolobus solfat... 111 2e-23
gb|AAK40966.1| Zn-dependent protease, tldE protein homolog, puta... 111 2e-23
pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii >gi|3256... 110 3e-23
pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii 109 4e-23
sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|... 109 6e-23
pir||E70461 pmbA protein - Aquifex aeolicus >gi|2984159|gb|AAC07... 106 5e-22
pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii ... 104 1e-21
pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Ors... 100 3e-20
pir||E72342 pmbA-related protein - Thermotoga maritima (strain M... 100 5e-20
pir||S77207 hypothetical protein slr1435 - Synechocystis sp. (st... 98 3e-19
sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG 93 5e-18
pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii ... 91 2e-17
gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum] 89 1e-16
gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis] 88 2e-16
pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria ... 87 3e-16
pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningit... 87 4e-16
pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (st... 87 5e-16
sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13... 85 2e-15
pir||S75708 hypothetical protein sll0887 - Synechocystis sp. (st... 83 4e-15
pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07... 83 7e-15
gi|11498263 conserved hypothetical protein [Archaeoglobus fulgid... 83 7e-15
pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (st... 82 1e-14
pir||D83086 conserved hypothetical protein PA4474 [imported] - P... 81 2e-14
pir||D72342 tldD protein - Thermotoga maritima (strain MSB8) >gi... 79 1e-13
sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD p... 79 1e-13
pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii ... 78 1e-13
pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (gr... 76 5e-13
dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity... 76 7e-13
sp|P57191|PMBA_BUCAI PMBA PROTEIN HOMOLOG >gi|10038774|dbj|BAB12... 75 2e-12
pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa ... 73 5e-12
sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C6418... 71 2e-11
sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||... 70 4e-11
pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aerugin... 70 4e-11
pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment) 70 5e-11
>pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus abyssi (strain
Orsay) >gi|5457662|emb|CAB49153.1| (AJ248283) PMBA
PROTEIN (TLDE PROTEIN) [Pyrococcus abyssi]
Length = 427
Score = 846 bits (2163), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MREDVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLT 60
MREDVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLT
Sbjct: 1 MREDVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLT 60
Query: 61 QGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNL 120
QGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNL
Sbjct: 61 QGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNL 120
Query: 121 STEEIVEYGTELVDVPPNAEASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGT 180
STEEIVEYGTELVDVPPNAEASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGT
Sbjct: 121 STEEIVEYGTELVDVPPNAEASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGT 180
Query: 181 GSYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLP 240
GSYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLP
Sbjct: 181 GSYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLP 240
Query: 241 NVSARNVYLKRSRFTELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGI 300
NVSARNVYLKRSRFTELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGI
Sbjct: 241 NVSARNVYLKRSRFTELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGI 300
Query: 301 LSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGNDEQDEGIFIRGIYGEHT 360
LSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGNDEQDEGIFIRGIYGEHT
Sbjct: 301 LSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGNDEQDEGIFIRGIYGEHT 360
Query: 361 ANSVSGDFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKI 420
ANSVSGDFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKI
Sbjct: 361 ANSVSGDFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKI 420
Query: 421 TTVGKIV 427
TTVGKIV
Sbjct: 421 TTVGKIV 427
>pir||B71249 hypothetical protein PH0249 - Pyrococcus horikoshii
>gi|3256638|dbj|BAA29321.1| (AP000001) 426aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 426
Score = 571 bits (1456), Expect = e-162
Identities = 270/425 (63%), Positives = 349/425 (81%), Gaps = 2/425 (0%)
Query: 3 EDVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQG 62
+DVEKL+KIL+ + ++EWEIYW +SS S KFRKIR+ E+ER ++ VS GIGLR+L G
Sbjct: 4 DDVEKLVKILK--SFDVEWEIYWESASSLSLKFRKIRRAEIERSTYRVSSGIGLRILVGG 61
Query: 63 KIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNLST 122
KIGFSY+SGS+F++++LE LVKRA KIAK++G+ YP FPVP K+P++RGLYD +I +LS
Sbjct: 62 KIGFSYLSGSDFSKDELELLVKRALKIAKISGTEYPAFPVPGKYPSIRGLYDKRIVDLSI 121
Query: 123 EEIVEYGTELVDVPPNAEASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGTGS 182
E++ YGTELV++ EASIG ST RGIMNSNG EG E R+LL GLY +EK KG+GS
Sbjct: 122 EDLSYYGTELVNIEVFGEASIGTSTGIRGIMNSNGVEGSENRSLLTLGLYAYEKGKGSGS 181
Query: 183 YSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLPNV 242
Y KSFR LP +E +E ++E A++EF++S +A+K+EKY GEII+EPKA+ S LSIF+PNV
Sbjct: 182 YGKSFRVLPDMEKVVEEIKETAMFEFKLSREAKKIEKYEGEIIIEPKALISFLSIFVPNV 241
Query: 243 SARNVYLKRSRFTELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILS 302
SA++VY+KRSRF LG+EV+S +IIDDPT++ G+ SYSFDGEGNPG+RKFIIK+G+L+
Sbjct: 242 SAKSVYMKRSRFERLGVEVSSESFSIIDDPTIDEGLGSYSFDGEGNPGMRKFIIKDGVLT 301
Query: 303 SFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGNDEQDEGIFIRGIYGEHTAN 362
SFL+DQKYG L+GIGSTGNA R YSSQP I SN++I GN+ DEGIFIR +YGEHTAN
Sbjct: 302 SFLSDQKYGSLLGIGSTGNAIRSYSSQPIIDSSNLLIPSGNETLDEGIFIRSVYGEHTAN 361
Query: 363 SVSGDFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKITT 422
++GDFSLN++LGY+V ++PFKGNM+VGN+FEMLKNVT+I K +EILD F +PKITT
Sbjct: 362 PITGDFSLNIELGYIVNNRGVKPFKGNMIVGNIFEMLKNVTSIDKNVEILDDFIAPKITT 421
Query: 423 VGKIV 427
G+IV
Sbjct: 422 WGRIV 426
>sp|Q57684|Y231_METJA HYPOTHETICAL PROTEIN MJ0231 >gi|2128001|pir||H64328 hypothetical
protein MJ0231 - Methanococcus jannaschii
>gi|1590966|gb|AAB98219.1| (U67479) pmbA protein (pmbA)
[Methanococcus jannaschii]
Length = 416
Score = 180 bits (451), Expect = 3e-44
Identities = 135/434 (31%), Positives = 219/434 (50%), Gaps = 30/434 (6%)
Query: 4 DVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQGK 63
D+EKLIKI G E E+ + S S + V+ +S GIG+RV+ GK
Sbjct: 2 DLEKLIKI--GEKEGFETEVLFVKSYEVSVD---LDGKSVDSFQTGISYGIGVRVIKDGK 56
Query: 64 IGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTE 123
+GF+Y + + E +V +A K + Y F P+K+ +G++ +I +L E
Sbjct: 57 VGFAYANKFD------ENIVYKAMK--NLVEDKYTEFAHPQKYKEPKGMFYKEILDLDEE 108
Query: 124 EIVEYGTELVDVPPNAEASI--GLSTSERG---IMNSNGTEGREERTLLAFGLYVFEKSK 178
+++E + D+ + A + G + E G ++NSNG + E+ T + + +
Sbjct: 109 KLLEDLITMRDIALDNNAIVLSGGVSKEVGYARLINSNGVDVEEQDTYFSAAISIMYD-- 166
Query: 179 GTGSYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIF 238
G SY R ++E + +AL + S K Y G I+L P+A+ +LS
Sbjct: 167 GETSYECRTRHNI---FDVEEISYRAL-DLAKKSANGKAISYKGNIVLSPRALYDLLSYT 222
Query: 239 L-PNVSARNVYLKRSRFT-ELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFII 296
L P SA NV RS ++G ++ +TIIDD T++ + S DGEG + ++
Sbjct: 223 LMPAFSAENVQRDRSVLKGKIGEQIFGENITIIDDGTLDYALYSSKCDGEGTATQKTVLV 282
Query: 297 KEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGN---DEQDEGIFIR 353
+ G+L ++L D K + G STGNASRGY S P +SP+N +I D+ DE ++I
Sbjct: 283 ENGVLKNYLYDIKRANREGKTSTGNASRGYRSLPYVSPTNFIIKETKNSLDDFDEYVYIN 342
Query: 354 GIYGEHTANSVSGDFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILD 413
G+ G HT+N ++GDF++ + Y + G+I P K M GN+FEM K + ++E
Sbjct: 343 GVIGSHTSNPITGDFAVEIQNSYYYKNGKIIPIKRGMFGGNIFEMFKEAIPL-NDVEQRG 401
Query: 414 GFASPKITTVGKIV 427
SP + G+I+
Sbjct: 402 KLISPSVVFKGEII 415
>pir||B69009 conserved hypothetical protein MTH1070 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622168|gb|AAB85559.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 430
Score = 168 bits (420), Expect = 1e-40
Identities = 117/395 (29%), Positives = 193/395 (48%), Gaps = 17/395 (4%)
Query: 37 KIRKVEVER-----GSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAK 91
K +VE++R G E GIG+R+L +G++GF+Y S + + R+ + ++A
Sbjct: 27 KTLEVEIQRDLIDFGKIESMTGIGIRILKEGRMGFAYTSDPDGV-DVAVRMAAQNLQLAD 85
Query: 92 VAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVD--VPPNAEASIGLSTSE 149
+ GF P +P+V+G++D +L E+ VE +++ + + + G T+
Sbjct: 86 PDENF--GFSEPSTYPSVKGIHDRSFDDLEVEDSVEMAGRMINRVLEEGCKPTSGGFTAS 143
Query: 150 R---GIMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALW 206
R I+NS G E T + + V G + + KL+ E V +A
Sbjct: 144 RIETFILNSEGVEESSSSTGFSAHISVTAGENGMKTTAYESDSSCKLDINPEWVAGRACR 203
Query: 207 EFEMSSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTE-LGIEVASGG 265
S R +E +L+ A A +L F SA NV RS + +G +V G
Sbjct: 204 IARDSMGGRSIESGRIPAVLDYHAAAGLLGTFAGAFSADNVQRGRSVLADRIGSQVTGEG 263
Query: 266 LTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRG 325
L++ DD T+EGG+ S FDGEG P R ++++GIL ++ + STGN RG
Sbjct: 264 LSVYDDGTLEGGLGSAPFDGEGTPSQRTALVEDGILRGYMHNIYTASKGRADSTGNGLRG 323
Query: 326 YSSQPSISPSNIMISPGND---EQDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGE 382
Y P++S +N ++ + + GIF+ + G HTAN +SGDFS+ + ++ GE
Sbjct: 324 YMEVPAVSTTNFILEFDSTVPLDDFRGIFVTDVLGAHTANPISGDFSVEANNAFMADSGE 383
Query: 383 IRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFAS 417
P K ML GN+FE++ V++ E + GF +
Sbjct: 384 FTPVKKAMLSGNIFELMMKVSSTDLERRQVGGFVT 418
>gi|11498264 antibiotic maturation protein (pmbA) [Archaeoglobus fulgidus]
>gi|7429843|pir||H69331 hypothetical protein AF0656 -
Archaeoglobus fulgidus >gi|2649962|gb|AAB90584.1|
(AE001059) antibiotic maturation protein (pmbA)
[Archaeoglobus fulgidus]
Length = 391
Score = 162 bits (406), Expect = 7e-39
Identities = 139/395 (35%), Positives = 204/395 (51%), Gaps = 41/395 (10%)
Query: 19 LEWEIYWGVSSSSSFKFR-KIRKVEVERGSFE-----VSGGIGLRVLTQGKIGFSYISGS 72
+EWE+ F++R K E+E G + V RV+ +G++GF+ S
Sbjct: 1 MEWEV---------FEYRTKGIMAEIEAGRLKIVSSYVDKSFSARVILKGRVGFASAS-- 49
Query: 73 NFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTEL 132
TR++ L A KIA+++ FP K +V+G+YD ++ +E I+E L
Sbjct: 50 --TRDEALSL---AEKIARISEDELEDFPNEKP-ASVKGIYDKRVEEADSELIMEEFERL 103
Query: 133 ---VDVPPNAEASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRR 189
V+ A A+I + E I NS G + RE+ T + + V +G +Y R
Sbjct: 104 RSAVEKANIASATIEHAVEEVRITNSFGLDSREKST--SSSMIVEAVFEGGSAYEVCGSR 161
Query: 190 LPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFL-PNVSARNVY 248
+E +IEG +KA S+KA K+E ++IL+P AV +LS L P++SA NV
Sbjct: 162 --SIELDIEGAAKKAEELAVDSAKAIKIEGGTYDVILQPIAVHQLLSNTLYPSLSAENVE 219
Query: 249 LKRSRFTELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQ 308
RS LG E G +T+IDDPTVEGG+ S FD EG + F+I G++ S+ D
Sbjct: 220 KGRS-VIRLGDEF--GRITVIDDPTVEGGLMSCGFDDEGVSARKTFLIDNGVVRSYYTDW 276
Query: 309 KYGHLIGIGSTGNASR-GYSSQPSISPSNIMISPGNDEQDEGIFIRGIYGEHTANSVSGD 367
K+ G+ TGN R SS P+ SN+++ + + D + I + G HTAN VSGD
Sbjct: 277 KHSKKYGV--TGNGFRLEESSFPAPMVSNVVLEVDDADDDNCLTIHSLIGSHTANPVSGD 334
Query: 368 FSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNV 402
FSL + Y GE + KG M+ GNVFE+LK V
Sbjct: 335 FSLECNNAYF---GE-KAVKGAMIYGNVFELLKKV 365
>pir||B75180 antibiotic/peptide maturation related protein PAB1956 - Pyrococcus
abyssi (strain Orsay) >gi|5458031|emb|CAB49521.1|
(AJ248284) ANTIBIOTIC/PEPTIDE MATURATION related protein
[Pyrococcus abyssi]
Length = 448
Score = 120 bits (297), Expect = 4e-26
Identities = 101/387 (26%), Positives = 183/387 (47%), Gaps = 23/387 (5%)
Query: 42 EVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKV--AGSIYPG 99
E+ G+ + +R + ++G + I + +E++++ ++ A K+AK+ +
Sbjct: 39 EISMGATRIEKVTIIRGIKDKRVGIAIIDTDS--KEEVKKAIEEAAKMAKLNTPDEKWSS 96
Query: 100 FPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVP----PN---AEASIGLSTSERGI 152
P P K+ + +D ++++STE +VE+ T + + PN A S G S +E I
Sbjct: 97 LPSPGKYREKPKVSED-LKSVSTETLVEFVTRGIKLARESDPNVTVAGGSAGTSWAEVEI 155
Query: 153 MNSNGTEGREE-RTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
NS G +E + F +V +K F LE ++EGV + L + +
Sbjct: 156 FNSQGINVSQEFGSAHIFFEFVGKKEGVVTPGIFDFDAKDNLELDVEGVVNRGLERVKWA 215
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFL-PNVSARNVYLKRSRFTE-LGIEVASGGLTII 269
++ + +I P A++ +LS L P S + K + + +G +VAS +TI
Sbjct: 216 YNVKEAKNEETTVIFGPWAISGLLSYALFPAFSGERLVKKTTPLADKVGEKVASDVITIY 275
Query: 270 DDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGY-SS 328
DD E I DGEG P + +I+EGI F+ D + + G STG+ R +
Sbjct: 276 DDTFHELSIAKAIADGEGVPTRKVTLIEEGIFKGFIWDNYWAKVYGTESTGHGQRDWRGG 335
Query: 329 QPSISPSNIMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGG 381
SI ++ +I G E E G + G+ G H++N +G+F++ + Y++ G
Sbjct: 336 GVSIGLNSAVIENGKRELSEIIGEIKHGYLVEGLQGAHSSNPDNGNFAVTANPAYLIEDG 395
Query: 382 EIRPFKGNMLVGNVFEMLKNVTNIGKE 408
E+ ++ GNV+E+LK T + K+
Sbjct: 396 EVVGSTVFLIAGNVYELLKQATEVSKD 422
>sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir||C69214 zinc
metalloproteinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621948|gb|AAB85354.1| (AE000862)
zinc metalloproteinase [Methanobacterium
thermoautotrophicum]
Length = 454
Score = 113 bits (281), Expect = 3e-24
Identities = 126/447 (28%), Positives = 192/447 (42%), Gaps = 52/447 (11%)
Query: 1 MREDVEKLIKILEGSNLNLEW-EIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVL 59
M D + L IL +E+ +I G S +SS + + EV+ G + G +RVL
Sbjct: 1 MEIDTDYLGSILMDIEDRVEYADIRAGTSRTSSILMKDGKLQEVKSGR---ASGFRIRVL 57
Query: 60 TQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRN 119
G GF++ ++ RL + A K K+ GS+ V P+V R
Sbjct: 58 RNGSWGFAFT-------DEPSRLGEMALKAIKMTGSLRGDVQVGSGAPSVDKTMVRSSRP 110
Query: 120 LSTEEIVEYGTELVDVPPNAEASIGLST--------SERGIMNSNGT--EGREERTLLAF 169
S E + D A +ST S +NS G+ E E R L
Sbjct: 111 PSDVPAAEKRELVSDAHHAASVDGVVSTTVSYVDMESSSAFLNSEGSLIEMAETRVALFL 170
Query: 170 --------GLYVFEKS-KGTGSYSKSFRRLPKLESEIEGVR--EKALWEFEMSSKARKLE 218
G+ KS GTG F L + + E G R EKA+ KA
Sbjct: 171 NAVASDGSGIQFGHKSCGGTGG----FEILEREDIEELGRRTGEKAV----RLLKASPPP 222
Query: 219 KYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTE--LGIEVASGGLTIIDDPTVEG 276
+I+ +P+ + L + + ++ L+ E LG ++AS G+TIIDDPT++G
Sbjct: 223 SGRFDIVTDPELTGVFIHEALGHAAEADLILQGDSILEGKLGEKIASEGVTIIDDPTIDG 282
Query: 277 GINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSN 336
SYS+D EG +++ G+L+S L ++ +G+ +GNA QP + SN
Sbjct: 283 -FGSYSYDAEGVRAAETVLVENGVLTSLLNSRETAFKLGLEPSGNARSAIGDQPIVRMSN 341
Query: 337 IMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEI-RPFKG 388
+ PG+ DE G+++RG G ++ G F N + ++ GEI P K
Sbjct: 342 TYLKPGDLSFDELIEDIRNGVYLRGSRGGQ-VDTGKGIFQFNAAESFRIQDGEIAEPVKD 400
Query: 389 NMLVGNVFEMLKNVTNIGKEIEILDGF 415
L GNV E LKNV +G + + GF
Sbjct: 401 VSLSGNVLETLKNVDGVGSDFRLGIGF 427
>emb|CAB57641.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 419
Score = 111 bits (275), Expect = 2e-23
Identities = 102/404 (25%), Positives = 190/404 (46%), Gaps = 27/404 (6%)
Query: 37 KIRKVEVERGSFEV-----SGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAK 91
K+R+ + + F V G G+R++ + Y G +T++ + +++ A KIAK
Sbjct: 22 KMREYTIAKDKFYVPIIVEETGYGIRLIDE-----KYRIGYIYTKKLNDNVLEEALKIAK 76
Query: 92 VAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASIGLSTSERG 151
+ S +P K P V+ + +++I ++ ++ EL + AS E
Sbjct: 77 LGESDKANI-LPSKQP-VKRINENQINEDVVQDTIKDLIELEEKVNLTSASASAINYEVS 134
Query: 152 IMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
I N+ G E E+R +L+ + + Y +R K+ +E ++ + + ++
Sbjct: 135 IFNTEGVEVSEKRGVLSVQASANDGNNSPEIYEYLIKRDSKIS--LEKLKASIIEKVKIM 192
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFLPNV-SARNVYLKRSRFTELGIEVASGGLTIID 270
K +++ ++ KA+ S+ S P++ SARN Y + S F +LG E+ + L IID
Sbjct: 193 KKKERIDPKGYDVTFTQKALDSLFSSLFPSLFSARNFYKETSPF-KLG-ELVNENLEIID 250
Query: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASR------ 324
DP + S SFD EGNP +I+ G++ L + + + + +T +ASR
Sbjct: 251 DPLNQSLPFSRSFDDEGNPSRVSKVIESGLVKRPLTNTYWATRMSVENTSSASRNLDWVV 310
Query: 325 -GYSSQPSISPSNIMISPGNDE---QDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRG 380
Y P + SNI+ N E ++ + + + G TA+ SG+FSL ++ ++ R
Sbjct: 311 PSYFIPPHVDFSNIIFDYKNTESNIEENSVIVDQLEGIDTADLSSGNFSLVANVSWLNRK 370
Query: 381 GEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKITTVG 424
E + ++ GN+ ++LKN+ + K IE S K+ G
Sbjct: 371 DEKIGLEELLITGNLKQLLKNIVSTSKNIENYGKVVSGKLKVRG 414
>gb|AAK40966.1| Zn-dependent protease, tldE protein homolog, putative (tldE)
[Sulfolobus solfataricus]
Length = 419
Score = 111 bits (275), Expect = 2e-23
Identities = 102/404 (25%), Positives = 190/404 (46%), Gaps = 27/404 (6%)
Query: 37 KIRKVEVERGSFEV-----SGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAK 91
K+R+ + + F V G G+R++ + Y G +T++ + +++ A KIAK
Sbjct: 22 KMREYTIAKDKFYVPIIVEETGYGIRLIDE-----KYRIGYIYTKKLNDNVLEEALKIAK 76
Query: 92 VAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASIGLSTSERG 151
+ S +P K P V+ + +++I ++ ++ EL + AS E
Sbjct: 77 LGESDKANI-LPSKQP-VKRINENQINEDVVQDTIKDLIELEEKVNLTSASASAINYEVS 134
Query: 152 IMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
I N+ G E E+R +L+ + + Y +R K+ +E ++ + + ++
Sbjct: 135 IFNTEGVEVSEKRGVLSVQASANDGNNSPEIYEYLIKRDSKIS--LEKLKASIIEKVKIM 192
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFLPNV-SARNVYLKRSRFTELGIEVASGGLTIID 270
K +++ ++ KA+ S+ S P++ SARN Y + S F +LG E+ + L IID
Sbjct: 193 KKKERIDPKGYDVTFTQKALDSLFSSLFPSLFSARNFYKETSPF-KLG-ELVNENLEIID 250
Query: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASR------ 324
DP + S SFD EGNP +I+ G++ L + + + + +T +ASR
Sbjct: 251 DPLNQSLPFSRSFDDEGNPSRVSKVIESGLVKRPLTNTYWATRMSVENTSSASRNLDWVV 310
Query: 325 -GYSSQPSISPSNIMISPGNDE---QDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRG 380
Y P + SNI+ N E ++ + + + G TA+ SG+FSL ++ ++ R
Sbjct: 311 PSYFIPPHVDFSNIIFDYKNTESNIEENSVIVDQLEGIDTADLSSGNFSLVANVSWLNRK 370
Query: 381 GEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKITTVG 424
E + ++ GN+ ++LKN+ + K IE S K+ G
Sbjct: 371 DEKIGLEELLITGNLKQLLKNIVSTSKNIENYGKVVSGKLKVRG 414
>pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii
>gi|3256635|dbj|BAA29318.1| (AP000001) 504aa long
hypothetical tldd protein [Pyrococcus horikoshii]
Length = 504
Score = 110 bits (272), Expect = 3e-23
Identities = 116/445 (26%), Positives = 201/445 (45%), Gaps = 61/445 (13%)
Query: 5 VEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGG----------- 53
+++++K+LE SSSS KF IR +E + G
Sbjct: 52 IDEILKVLEK------------YSSSSEIKFMDIRMESIEYTELTIENGKVENLENNGER 99
Query: 54 -IGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAG---SIYPGFPVPKKFPNV 109
+G+RVL G + + S ++ T+ +E +VK A K+AKV+ S+Y P+
Sbjct: 100 GVGVRVLING---WGFASTNDLTK--IEEIVKTAIKMAKVSRISTSVYTRDPIEDNVEVK 154
Query: 110 RGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASIGLSTSERGIMNSN--GTEGRE-ERTL 166
+G+ K++++ EE V+ G E+ ++ + I+ +EG E T+
Sbjct: 155 QGI---KLKDIDLEEKVKLGVEVNNMLKRENIKTRKFSYSDIIVKKLYLSSEGSIIESTV 211
Query: 167 LAFGLYVFEKSKGTG---SYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNG- 222
L + +K +G +Y KSF E +E + + W +S KA L
Sbjct: 212 PRVYLSISSVAKFSGKMQTYWKSFGGTGGWEI-VEKI-DFEHWANFVSKKAVSLLSARSP 269
Query: 223 -----EIILEPKAVASILSIFLPNVSARNVYLKRSRFTE--LGIEVASGGLTIIDDPTVE 275
++I++P+ + L + S + + LG +A LT++DDPT+
Sbjct: 270 PSGEMQVIMDPELAGVFIHEALGHASEADAVKQEESILAGMLGKRIAVEELTVVDDPTLP 329
Query: 276 GGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNA-SRGYSSQPSISP 334
G SY +D EG PG R II++G+L ++L D++ L+ + G+ ++ YS P +
Sbjct: 330 GKFGSYIYDDEGIPGKRVEIIRDGVLVNYLNDRETSSLLNLEPNGHGRAQSYSHVPLVRM 389
Query: 335 SNIMISPGN-------DEQDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEIR-PF 386
SN I PG+ DE G+++ G G + SG+F GY+V GEI+
Sbjct: 390 SNTYIEPGDWRFEEILDEVKFGVYMIGDKGGQ-VDVASGNFMFAAKEGYLVENGEIKGHL 448
Query: 387 KGNMLVGNVFEMLKNVTNIGKEIEI 411
+ L GN+ L+ + IG +++I
Sbjct: 449 RDVALSGNILSALREIKAIGNDLKI 473
>pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii
Length = 451
Score = 109 bits (271), Expect = 4e-23
Identities = 107/436 (24%), Positives = 199/436 (45%), Gaps = 36/436 (8%)
Query: 3 EDVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQG 62
E +EKL+++ + +++ + + G S++ + K KI ++ G+ G+ +RVL
Sbjct: 5 EKIEKLLEVGDYADIRINF----GESNTITLKDGKIEEISSGFGN-----GVAVRVLY-- 53
Query: 63 KIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYD--DKIRNL 120
K G+ +++ + + E++E+L+ +AYK+AK++ + K + + Y KI N
Sbjct: 54 KNGWGFVTSNIVSEEEIEKLINKAYKMAKISNEYSEKEXILKDYKAIIDNYKMIGKI-NP 112
Query: 121 STEEIVEYGTELVDVPPNAE----ASIGLSTSE----RGIMNSNGTEGREERTLLAFGLY 172
+ +I E ++D N SI +S S+ R M S G+ E T +
Sbjct: 113 TDVDIEEKKEIIIDTYKNMTDEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMN 172
Query: 173 VFEKSKGTGSYSKSFRR---LPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPK 229
K G Y K++ + +A KA+ K ++IL+P+
Sbjct: 173 CVAKENGNLQYGAERTGGFGFEKIKDNYLNLALEAKNRALRLLKAKPCPKGKFKVILDPE 232
Query: 230 AVASILSIFLPNVSARNVYLKRSRF--TELGIEVASGGLTIIDDPTVEGGINSYSFDGEG 287
+ + + S ++ L+ +LG V S +T+IDD T+EG SY +D EG
Sbjct: 233 LAGVFIHEAVGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEG 292
Query: 288 NPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGN---- 343
G + II+ GIL ++L ++ + TGN ++P + SN I PG+
Sbjct: 293 VEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLNKPIVRMSNTFIKPGDWSFE 352
Query: 344 ---DEQDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEI-RPFKGNMLVGNVFEML 399
++ EGIF++G G ++ G F + Y++ GE+ + K L G + ++L
Sbjct: 353 ELLEDTKEGIFLKGSRGGQ-VDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDIL 411
Query: 400 KNVTNIGKEIEILDGF 415
V + K+ E+ G+
Sbjct: 412 FKVDAVTKDFELSVGY 427
>sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|AAB99001.1| (U67542)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 451
Score = 109 bits (270), Expect = 6e-23
Identities = 107/436 (24%), Positives = 199/436 (45%), Gaps = 36/436 (8%)
Query: 3 EDVEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQG 62
E +EKL+++ + +++ + + G S++ + K KI ++ G+ G+ +RVL
Sbjct: 5 EKIEKLLEVGDYADIRINF----GESNTITLKDGKIEEISSGFGN-----GVAVRVLY-- 53
Query: 63 KIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYD--DKIRNL 120
K G+ +++ + + E++E+L+ +AYK+AK++ + K + + Y KI N
Sbjct: 54 KNGWGFVTSNIVSEEEIEKLINKAYKMAKISNEYSEKEIILKDYKAIIDNYKMIGKI-NP 112
Query: 121 STEEIVEYGTELVDVPPNAE----ASIGLSTSE----RGIMNSNGTEGREERTLLAFGLY 172
+ +I E ++D N SI +S S+ R M S G+ E T +
Sbjct: 113 TDVDIEEKKEIIIDTYKNMTDEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMN 172
Query: 173 VFEKSKGTGSYSKSFRR---LPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPK 229
K G Y K++ + +A KA+ K ++IL+P+
Sbjct: 173 CVAKENGNLQYGAERTGGFGFEKIKDNYLNLALEAKNRALRLLKAKPCPKGKFKVILDPE 232
Query: 230 AVASILSIFLPNVSARNVYLKRSRF--TELGIEVASGGLTIIDDPTVEGGINSYSFDGEG 287
+ + + S ++ L+ +LG V S +T+IDD T+EG SY +D EG
Sbjct: 233 LAGVFIHEAVGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIEGAFGSYKYDDEG 292
Query: 288 NPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGN---- 343
G + II+ GIL ++L ++ + TGN ++P + SN I PG+
Sbjct: 293 VEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLNKPIVRMSNTFIKPGDWSFE 352
Query: 344 ---DEQDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEI-RPFKGNMLVGNVFEML 399
++ EGIF++G G ++ G F + Y++ GE+ + K L G + ++L
Sbjct: 353 ELLEDTKEGIFLKGSRGGQ-VDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGEILDIL 411
Query: 400 KNVTNIGKEIEILDGF 415
V + K+ E+ G+
Sbjct: 412 FKVDAVTKDFELSVGY 427
>pir||E70461 pmbA protein - Aquifex aeolicus >gi|2984159|gb|AAC07693.1|
(AE000761) peptide maturation [Aquifex aeolicus]
Length = 441
Score = 106 bits (262), Expect = 5e-22
Identities = 96/415 (23%), Positives = 181/415 (43%), Gaps = 34/415 (8%)
Query: 35 FRKIRKVEVERGSFEVSG-------GIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAY 87
F +++K+++E + +V GIG+RVL ++GFSY S E+++ V++A
Sbjct: 22 FERVKKLKIEVSNEQVENVSSSEERGIGIRVLKDKRLGFSYTSFLG--EEEIKDTVEKAM 79
Query: 88 KIAKVAGSIYP-GFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASI-GL 145
++ ++ GF K +YD++ ++ +E +E ++ + I G+
Sbjct: 80 EMCEIQEPDEANGFIEKLKPSKAVSVYDEESLSIPLQEKMEIPVKMEKYAKELDKRIVGV 139
Query: 146 STS-------ERGIMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLES-EI 197
S E NS G E T + + S FR +L++
Sbjct: 140 RKSTLTEVEFEVRSFNSFGVEFGYRGTSYTSMIATLGTENDDSAISWEFRGARRLKNLNW 199
Query: 198 EGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLP----NVSARNVYLKRSR 253
+ + E A+++ E + ++ ++ A +L F P + + L + +
Sbjct: 200 KSMVEDAVFKTVNLLHPSPFETRSMPVVFFRESFAMLLDAFSPMFLGDYLVKGKTLLKDK 259
Query: 254 FTELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHL 313
E+ VAS +T++DD ++E G +++ +D EG P + +I +G+ FL
Sbjct: 260 VNEI---VASEKITLVDDGSMEEGFSTFPYDAEGVPTRKNLLIDKGVFKGFLHSLYTARK 316
Query: 314 IGIGSTGNASRG-YSSQPSISPSNIMISPGN-------DEQDEGIFIRGIYGEHTANSVS 365
TGN+ RG Y PS +N + GN DE + + G HT +++S
Sbjct: 317 SSQEPTGNSVRGSYKELPSSGTTNFYLEKGNLSFEELLSYYDEVFLVLEVMGLHTVDTIS 376
Query: 366 GDFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKI 420
GDFSL +G + + +G + GN+ ++LKNV +G ++ SP +
Sbjct: 377 GDFSLGCSGILYKKGKKDKTVRGITVAGNILDLLKNVEEVGNDLTFYGSVGSPSV 431
>pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii
>gi|3257987|dbj|BAA30670.1| (AP000006) 445aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 445
Score = 104 bits (258), Expect = 1e-21
Identities = 90/387 (23%), Positives = 177/387 (45%), Gaps = 23/387 (5%)
Query: 42 EVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAG--SIYPG 99
E+ G+ +S +R + +IG S + N ++E +++ ++ A K+A++ +
Sbjct: 36 EISMGTTRMSTITIVRGIKDNRIGISIVD--NDSKEDVKKAIEEAAKMARLNNPDDKWKS 93
Query: 100 FPVPKKFPNVRGLYDDKIRNLSTEEIVEY---GTELV-DVPPN---AEASIGLSTSERGI 152
P P K+ + +++++ STE + G +L + PN A S G S SE I
Sbjct: 94 LPEPGKYRE-KPKVNEELKEASTETLASMVIKGIQLARESDPNVTVAGGSAGASWSEFSI 152
Query: 153 MNSNGTEGREERTLL-AFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
NS+G +E F +V +K F L ++E + + + + +
Sbjct: 153 ANSHGVNVTQEYGHAHVFFEFVGKKEGVVTPGIFEFDIKDNLNLDVESIVNRGIERVKWA 212
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFL-PNVSARNVYLKRSRFTE-LGIEVASGGLTII 269
K ++ + +I P A++ + L P S + K + + +G ++AS +TI
Sbjct: 213 YKVKEAKNEEAPVIFSPWAISGLFHYALFPAFSGERLIKKTTPLADKVGEKIASDVITIY 272
Query: 270 DDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGY-SS 328
DD E + DGEG P + +I+ G+ F+ D + + G STG+ R +
Sbjct: 273 DDTFHELSVVKAIADGEGVPTRKTMLIENGVFKGFIWDNYWAKVYGTESTGHGQRDWRGG 332
Query: 329 QPSISPSNIMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGG 381
+I ++ +I G +E G + G+ G H++N +G+F+++ + Y++ G
Sbjct: 333 GVTIGLNSAVIENGKRSLEEMIQDIKHGYLVEGVQGAHSSNPDNGNFAISANPAYLIEDG 392
Query: 382 EIRPFKGNMLVGNVFEMLKNVTNIGKE 408
EI ++ N++E+LK + + KE
Sbjct: 393 EIAGSTVFLVASNIYELLKQASEVSKE 419
>pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Orsay)
>gi|5457661|emb|CAB49152.1| (AJ248283) TLDD PROTEIN
[Pyrococcus abyssi]
Length = 452
Score = 100 bits (247), Expect = 3e-20
Identities = 112/400 (28%), Positives = 190/400 (47%), Gaps = 43/400 (10%)
Query: 40 KVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGS---I 96
KVE + EV GIG+RVL G + + S ++ ++ LE +K A K+AKV+ + +
Sbjct: 37 KVEGVESNEEV--GIGVRVLING---WGFASTNDLSK--LEDTIKMAIKLAKVSNAEVPL 89
Query: 97 YPGFPVPKKFPNVRGLYDDK--IRNLSTEEIVEYGTELV-----DVPPNAEASIGLSTSE 149
Y G PV K + K ++ EE + G E+ D + S +
Sbjct: 90 YVGNPVEGK-----AIIKQKKDFLDVDLEEKTKLGLEVEKMIRRDKIKTSRFSYSDFVTR 144
Query: 150 RGIMNSNGTEGREERTLLAFGLYVFEKSKGT-GSYSKSFRRLPKLESEIEGVREKALWEF 208
+ +NS G+ + F L +S +Y KSF E +E V + W
Sbjct: 145 KIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGTVGWEL-VESV-DFNYWAN 202
Query: 209 EMSSKARKL----EKYNGE--IILEPKAVASILSIFLPN-VSARNVYLKRSRFTEL-GIE 260
+SSKA L +GE II++P+ + L + V A +V S + + G +
Sbjct: 203 FISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEADSVRQGESILSGMIGKK 262
Query: 261 VASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTG 320
+ S LT+IDDPT+ G SY +D EG PG R IIK+G+L ++L D++ + + G
Sbjct: 263 IGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNYLNDRETSKALNLVPNG 322
Query: 321 NA-SRGYSSQPSISPSNIMISPGN-------DEQDEGIFIRGIYGEHTANSVSGDFSLNV 372
+ ++ Y+ P + SN I+PG +E G+++ G G + +G F
Sbjct: 323 HGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDKGGQ-VDIANGSFMFGA 381
Query: 373 DLGYVVRGGEIRPFKGNM-LVGNVFEMLKNVTNIGKEIEI 411
GY+++ GEI+ ++ + GN+ + LK + +G++++I
Sbjct: 382 KEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKI 421
>pir||E72342 pmbA-related protein - Thermotoga maritima (strain MSB8)
>gi|4981252|gb|AAD35809.1|AE001743_11 (AE001743)
pmbA-related protein [Thermotoga maritima]
Length = 435
Score = 99.8 bits (245), Expect = 5e-20
Identities = 75/251 (29%), Positives = 122/251 (47%), Gaps = 18/251 (7%)
Query: 180 TGSYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFL 239
+GS+ + R L E G R + SK KY +++ A+ ++ +F+
Sbjct: 183 SGSWYELARTPEDLNPEEIGKRAAEEAISLIGSKTIPSGKY--PVLMRNTALLDLMEMFI 240
Query: 240 PNVSARNVYLKRSRFT-ELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKE 298
P +SA NV S +LG +V + ++I D P G++S FD EG P KF+++
Sbjct: 241 PMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLEN 300
Query: 299 GILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGN-------DEQDEGIF 351
G+L +FL + K G+ TGN G I P N+M+ PG E D G+
Sbjct: 301 GVLKTFLHNLKTARKEGVEPTGNGFVG-----GIRPVNLMLMPGEKSFEELLKEMDRGVV 355
Query: 352 IRGIYGEHT-ANSVSGDFSLNVDLGYVVRGGEIRPFKGNMLV-GNVFEMLKNVTNIGKEI 409
I + G H ANS+SG+FSL GY V GEI ++ + GN ++L+ + +G ++
Sbjct: 356 ITEVEGMHAGANSISGEFSLFAK-GYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDV 414
Query: 410 EILDGFASPKI 420
++ +P +
Sbjct: 415 KVSQHTIAPSV 425
>pir||S77207 hypothetical protein slr1435 - Synechocystis sp. (strain PCC 6803)
>gi|1652621|dbj|BAA17541.1| (D90907) PmbA protein
[Synechocystis sp.]
Length = 427
Score = 97.5 bits (239), Expect = 3e-19
Identities = 115/428 (26%), Positives = 189/428 (43%), Gaps = 51/428 (11%)
Query: 22 EIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLER 81
E+Y+ S S F R ++E E G+ LR+ G+ G + G + E
Sbjct: 21 EVYYSRSFSRPVFFEANRLKQLESSESE---GVALRLWKNGQAGLAVAYGP----VEPEI 73
Query: 82 LVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKI-RNLSTEEIVEYG--------TEL 132
LV++A +A ++ P P P +F R Y + + ++S E+++++G +E
Sbjct: 74 LVEKALALA----ALNP--PNPPRFTAPRQDYRESLGEDVSVEQLIDWGQTAIASLRSEF 127
Query: 133 VDVPPNAEASIGLSTSERGIMNSNGTEGR-EERTL-LAFGLYVFEKSKGTGSYS-KSFRR 189
+V + E + ST ++NS G + ER+L FG+ Y + R
Sbjct: 128 AEVLCSGE--LACSTDSTRLINSEGLDCTWTERSLSYYFGVEWIRGEDFLAIYDGEQCRG 185
Query: 190 LPKLESEIEGVREKALW-EFEMSSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVY 248
+ +E +R++ LW E + K+ I+L A + + + + V
Sbjct: 186 QTNVGQVVENLRQRLLWVEVNQQIQGGKMP-----ILLTSGAASLLWDTVGEALHGQRVA 240
Query: 249 LKRSRFTE-LGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLAD 307
S + E LG VA L I DPT FD EG+ + +IK G ++ F D
Sbjct: 241 EDSSPWAEKLGQTVAIEELNISQDPTAIPF--DCPFDDEGSRTQKLALIKNGKIAQFYTD 298
Query: 308 QKYGHLIGIGSTGNASR---GYSSQPSISPSNIMISPGNDEQDE-------GIFIRGIYG 357
+ +G +TGN R G + QP + N++I+PG D+ G+ + I G
Sbjct: 299 HETAEKLGTTTTGNGFRPSLGSAPQPGLV--NMLITPGTASFDQLLKKLGNGLVVDQILG 356
Query: 358 EHTANSVSGDFSLNVDLGYVVRGGEIR-PFKGNMLVGNVFEMLKNVTNIGKEIEILDGFA 416
+SGDFS+NVDLGY V+ GEI K M+ GN++E+L + +G + A
Sbjct: 357 GGA--DISGDFSINVDLGYRVQNGEITGRVKDTMVSGNIYELLNQIIALGSDRRWQGSCA 414
Query: 417 SPKITTVG 424
+P I G
Sbjct: 415 TPSIILDG 422
>sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG
Length = 482
Score = 93.2 bits (228), Expect = 5e-18
Identities = 107/431 (24%), Positives = 188/431 (42%), Gaps = 44/431 (10%)
Query: 15 SNLNLEW-EIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSN 73
S+ N+++ ++Y+ +S S+ + ++ GSF + G+G+R ++ K GF+Y N
Sbjct: 28 SHRNIDYADLYFQLSQDESWV---LEDGIIKEGSFHIDRGVGVRAVSGEKTGFAYADQIN 84
Query: 74 FTREQLERLVKRAYKIAKVA-GSIYPGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTEL 132
L++ + IA+V G++ P R + + +L+ E+ +E L
Sbjct: 85 LA--SLQQCAEAVKGIAQVKQGNLISPSAFNVVNPIARYAAINPLESLTKEKKIEL-LHL 141
Query: 133 VDVPPNAE--------ASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGT---G 181
VD AE AS+ E IM ++GT + R L+ + V + G G
Sbjct: 142 VDRTARAEDHRVTKVSASLSSVYEEVLIMATDGTLAADIRPLVRLSISVLVEENGKRERG 201
Query: 182 SYSKSFR-RLPKLESEIEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASI-LSIFL 239
S R L ++G L+ E +A N + P + + L
Sbjct: 202 SCGSGGRFGLDWFFEVVDGDIRAVLFAKEAVRQAL----VNLSAVAAPAGLMPVVLGAGW 257
Query: 240 PNVSARNVY----------LKRSRFT-ELGIEVASGGLTIIDDPTVEGGINSYSFDGEGN 288
P V + S FT ++G +V S TI+DD T+E S + D EG
Sbjct: 258 PGVLLHEAVGHGLEGDFNRKESSLFTGKIGEQVTSPLCTIVDDGTIENRRGSLTIDDEGV 317
Query: 289 PGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASR-GYSSQPSISPSNIMISPGNDEQD 347
P +IK+GIL ++ D+ L+G+ +TGN R Y+ P +N + G + D
Sbjct: 318 PSQCNVLIKDGILQGYMQDKMNARLMGVSTTGNGRRESYAHLPMPRMTNTYMLAGQSQFD 377
Query: 348 EGI--FIRGIYGEH----TANSVSGDFSLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLK 400
+ I +GIY H + SG F + Y++ G+I +P KG L+G+ E+++
Sbjct: 378 DLIASVKQGIYAPHFGGGQVDITSGKFVFSTSEAYLIEKGKITKPVKGATLIGSGIEVMQ 437
Query: 401 NVTNIGKEIEI 411
++ + + E+
Sbjct: 438 KISMVADKSEL 448
>pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii
>gi|3257986|dbj|BAA30669.1| (AP000006) 458aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 458
Score = 91.3 bits (223), Expect = 2e-17
Identities = 100/396 (25%), Positives = 172/396 (43%), Gaps = 39/396 (9%)
Query: 49 EVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPN 108
+++ G+ +RVL G GFS S +++E +K AYK+AKVA +
Sbjct: 48 KLNRGVAIRVLVNGAWGFS----STSELDKVEEAIKEAYKLAKVASETKKEKIKLAEIKP 103
Query: 109 VRGLYDDKI----RNLSTEEIVEYGTELVDVPPNAEA--SIGLSTSERG----IMNSNGT 158
V K+ R + EE + + EL ++ +A S+ + + G ++ + GT
Sbjct: 104 VEDFVKSKMKIKPREVDIEEKINHLKELENLLKEDKAVKSVNIRYEDGGGQKILLTNEGT 163
Query: 159 EGREERTLLAFGLYVFEKSKGT--------GSYSKSFRRLPKLESEIEGVREKALWEFEM 210
+ + L G+YV K G G+ + + + E E VR++ L +
Sbjct: 164 KIEWDYNYLWQGVYVTGKEDGKLAMARDTIGAVDYGWELMTEKEPN-EKVRDRILRKLHS 222
Query: 211 SSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTELGIEVASGGLTIID 270
K ++ ++ P V I L +++ ++ + LG ++A +T+
Sbjct: 223 QLKGITPKRGEFPVVAGPIIVGIIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTM-S 281
Query: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNA-SRGYSSQ 329
+ VEGG + +D EG P II+ GIL + +++Y + G+A ++ Y
Sbjct: 282 ERHVEGGFGNDKYDDEGVPVRDIHIIENGILKEIMLNREYATKFNMEPNGHARAQDYRYP 341
Query: 330 PSISPSNIMISPGN---DEQDEGIFIRGIY------GEHTANSVSGDFSLNVDLGYVVRG 380
P I N + PG+ +E E I G Y G+ NS F + + GYV+R
Sbjct: 342 PIIRMRNTVFEPGDWSFEEMIEDIKF-GYYLVDFRGGQAQLNSA---FQVGIQEGYVIRN 397
Query: 381 GEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDGF 415
GEI P + + G E LK +T +GK+ I GF
Sbjct: 398 GEIAEPIRDTSITGVAIEALKKITAVGKDFGIEVGF 433
>gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum]
Length = 479
Score = 88.5 bits (216), Expect = 1e-16
Identities = 103/426 (24%), Positives = 178/426 (41%), Gaps = 44/426 (10%)
Query: 22 EIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLER 81
E++ S + + F R +++ +++ S G GLR + +G+++ S + L
Sbjct: 39 ELFLEYSQTEALMFDNGR---LKQATYDTSQGFGLRAVKDDAVGYAHSSDVS-----LPA 90
Query: 82 LVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTEE-----IVEYGTELVDVP 136
L++ A +A V G F P NVR DD + E + E L D
Sbjct: 91 LIRAADAVAAVRGGYSGSFSAPPPHTNVRLYGDDNPLDAPGFETKVKLLAEIDAYLRDKD 150
Query: 137 PNAE---ASIGLSTSERGIMNSNGTEGREERTLLAFGLYVF--------EKSKGTGSYS- 184
P ++G + I+ +G R+ R L+ + V SKG G +
Sbjct: 151 PRVRQVSVTLGATWQVVEILRPDGESYRDIRPLVRVNISVVAGQGDRQESGSKGYGGRAG 210
Query: 185 -KSFRRLPKLESEIEGVREKALWEFE-MSSKARKLEKYNGEIILEPKAVASILSIFLPNV 242
F +G +AL E + + A +++ ++L +L + +
Sbjct: 211 YAEFIESKNWRDAADGALREALVNLESIPAPAGEMD-----VVLGAGWPGVMLHEAVGHG 265
Query: 243 SARNVYLKR-SRFTEL-GIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGI 300
+ KR S F L G +VA+ G+T++DD T+ S S D EG P R +I++GI
Sbjct: 266 LEGDFNRKRTSAFAGLMGRQVAAKGVTVVDDGTIASRRGSLSIDDEGTPTNRTVLIEDGI 325
Query: 301 LSSFLADQKYGHLIGIGSTGNASR-GYSSQPSISPSNIMISPGNDEQDE-------GIFI 352
L ++ D++ L+ + TGN R GY+ P +N + G+ + E G+F
Sbjct: 326 LVGYMQDRQNARLMNMKPTGNGRRQGYAHVPMPRMTNTYMLAGDRDPAEILASVKNGVFA 385
Query: 353 RGIYGEHTANSVSGDFSLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEI 411
+G + SG + Y + G+I P KG ML+GN L + IG ++ +
Sbjct: 386 AN-FGGGQVDITSGKYVFQCTEAYKIENGKIGAPLKGAMLIGNGPTDLHRIRMIGNDLAL 444
Query: 412 LDGFAS 417
G +
Sbjct: 445 DTGIGT 450
>gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis]
Length = 448
Score = 87.8 bits (214), Expect = 2e-16
Identities = 95/386 (24%), Positives = 164/386 (41%), Gaps = 71/386 (18%)
Query: 54 IGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLY 113
IGLR+ + + +S S+F++E L+ LV+RA +A+ A
Sbjct: 56 IGLRLFIGHRS--ASVSSSDFSKEALDALVERAVAMAREAP------------------- 94
Query: 114 DDKIRNLSTEEIVEYGT-------ELVDVPPNAEASIGLSTSER-----GIMNSNGTEGR 161
+D+ L+ +E++ GT + ++ P + L + GI NS G
Sbjct: 95 EDRWAGLAPKELLMQGTAPEIESDDGKEIAPAVLRELALKAEDAARSVDGITNSEGASAS 154
Query: 162 EERTLLAFGLYV-FEKSKGTGSYSKSF-------------------RRLPKLES-EIEGV 200
RT+ A F + + SY S R L++ E+ G
Sbjct: 155 AGRTIFALATSEGFTRGSSSSSYGCSACVIAGQGVNMQRDYDFHATRYFEDLDAAELIGT 214
Query: 201 R--EKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTE-L 257
R E+ + + +++ II +P+ + LS + +S + K S + L
Sbjct: 215 RAAERTIARLNPT----RIDSGQMPIIFDPRVGSGFLSYLIQGISGGAITRKTSFLLDSL 270
Query: 258 GIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIG 317
G V + G+TI +DP + GI S +FDGEG P II +G L+ +L D +G+
Sbjct: 271 GKPVFNEGITIKEDPWRKRGIASRAFDGEGLPTKPNNIIDKGRLNGWLLDSAAARQLGMT 330
Query: 318 STGNASRGYSSQPSISPSNIMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFSL 370
TG+A RG PS +N+ + G +E GI++ + G N ++GD+S
Sbjct: 331 PTGHARRGVGGPPSTGTANLYLEAGKVTPEELMSDIKLGIYVTEMIGS-GVNMITGDYSR 389
Query: 371 NVDLGYVVRGGEI-RPFKGNMLVGNV 395
G+++R G++ P + GN+
Sbjct: 390 GAS-GFIIRDGQLAEPVAEITVAGNL 414
>pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379119|emb|CAB83668.1|
(AL162752) TLDD protein homolog [Neisseria meningitidis
Z2491]
Length = 480
Score = 87.4 bits (213), Expect = 3e-16
Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 39/401 (9%)
Query: 43 VERGSFEVSGGIGLRVLTQGKIGFSY-----ISGSNFTREQLERLVKRAYKIAKVAGSIY 97
V+ GSF+++ G+G+R ++ K F+Y I N + + + K++ S
Sbjct: 57 VKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSINRSARAVRAIGAAGGKVSAKMPSET 116
Query: 98 PGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASIGLSTSERGIMNS-- 155
G PV + GL D ++ VE + D P + GL+ + +
Sbjct: 117 RGKPVCSASDPIAGL--DSAAKVALLNKVEAIAKAAD-PRIVQVMAGLTCEYDMVYLARL 173
Query: 156 NGTEGREERTLLAFGLYVFEK---------SKGTGSYSKSFRRLPKLESEIEGVREKALW 206
+G + R ++ + V K + G G Y ++ + ++ ++AL
Sbjct: 174 DGKHAADIRPMVRLNVTVIAKQGERREQGSAGGGGRYDLAYFDENLVRQFVDAAVKQALT 233
Query: 207 EFEMS-SKARKLEKYNGE----IILEPKAVASILSIFLPNVSARNVYLKRSRFTELGIEV 261
E + A ++ G ++L + F N +V+ R +G V
Sbjct: 234 NLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEGDF--NRKGTSVFSGR-----IGERV 286
Query: 262 ASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGN 321
A+ G+T++D + G S + D EGN R +I++GIL ++ D+ L G STGN
Sbjct: 287 AAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVGYMQDETNARLTGTQSTGN 346
Query: 322 ASR-GYSSQPSISPSNIMISPGNDEQDEGI--FIRGIY----GEHTANSVSGDFSLNVDL 374
R Y+S P +N + G+ E +E I +GIY G + SG F +
Sbjct: 347 GRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVNFGGGQVDITSGKFVFSASE 406
Query: 375 GYVVRGGEIR-PFKGNMLVGNVFEMLKNVTNIGKEIEILDG 414
+ V GG ++ P KG ++GN E+LK+V+ IG + + G
Sbjct: 407 AWWVEGGRLQYPVKGATIIGNGPEVLKHVSMIGNDTALDSG 447
>pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7227328|gb|AAF42385.1| (AE002556) tldD
protein [Neisseria meningitidis MC58]
Length = 480
Score = 87.0 bits (212), Expect = 4e-16
Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 39/401 (9%)
Query: 43 VERGSFEVSGGIGLRVLTQGKIGFSY-----ISGSNFTREQLERLVKRAYKIAKVAGSIY 97
V+ GSF+++ G+G+R ++ K F+Y I N + + + K++ S
Sbjct: 57 VKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSINRSARAVRAIGAAGGKVSAKMPSET 116
Query: 98 PGFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASIGLSTSERGIMNS-- 155
G PV + GL D ++ VE + D P + GL+ + +
Sbjct: 117 RGKPVCSASDPIAGL--DSAAKVALLNKVEAIAKAAD-PRIVQVMAGLTCEYDMVYLARL 173
Query: 156 NGTEGREERTLLAFGLYVFEK---------SKGTGSYSKSFRRLPKLESEIEGVREKALW 206
+G + R ++ + V K + G G Y ++ + ++ ++AL
Sbjct: 174 DGKHAADIRPMVRLNVTVIAKQGERREQGSAGGGGRYDLAYFDENLVHRFVDAAVKQALT 233
Query: 207 EFEMS-SKARKLEKYNGE----IILEPKAVASILSIFLPNVSARNVYLKRSRFTELGIEV 261
E + A ++ G ++L + F N +V+ R +G V
Sbjct: 234 NLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEGDF--NRKGTSVFSGR-----IGERV 286
Query: 262 ASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGN 321
A+ G+T++D + G S + D EGN R +I++GIL ++ D+ L G STGN
Sbjct: 287 AAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVGYMQDETNARLTGTQSTGN 346
Query: 322 ASR-GYSSQPSISPSNIMISPGNDEQDEGI--FIRGIY----GEHTANSVSGDFSLNVDL 374
R Y+S P +N + G+ E +E I +GIY G + SG F +
Sbjct: 347 GRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVNFGGGQVDITSGKFVFSASE 406
Query: 375 GYVVRGGEIR-PFKGNMLVGNVFEMLKNVTNIGKEIEILDG 414
+ V GG ++ P KG ++GN E+LK+V+ IG + + G
Sbjct: 407 AWWVEGGRLQYPVKGATIIGNGPEVLKHVSMIGNDTALDSG 447
>pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (strain Orsay)
>gi|5458032|emb|CAB49522.1| (AJ248284) TLDD RELATED
PROTEIN [Pyrococcus abyssi]
Length = 458
Score = 86.6 bits (211), Expect = 5e-16
Identities = 98/396 (24%), Positives = 169/396 (41%), Gaps = 39/396 (9%)
Query: 49 EVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPN 108
+++ G+ +RVL G GFS S + +LE +K AYK+AK A +
Sbjct: 48 KLNRGVAIRVLANGAWGFSSTSDLS----KLEEAIKEAYKLAKSASETKKEKIELAEIKP 103
Query: 109 VRGLYDDKI----RNLSTEEIVEYGTELVDVPPNAEA--SIGLSTSERG----IMNSNGT 158
V K+ R + EE V++ TEL + E S+ + + G ++ + GT
Sbjct: 104 VEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGT 163
Query: 159 EGREERTLLAFGLYVFEKSKGT--------GSYSKSFRRLPKLESEIEGVREKALWEFEM 210
+ L +YV K +G G+ + + + E E V+++ L +
Sbjct: 164 RIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDYGWELMTEKEPN-EKVKDRLLRKLHS 222
Query: 211 SSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTELGIEVASGGLTIID 270
++ ++ P V I L +++ ++ + LG ++A +T+
Sbjct: 223 QLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTM-S 281
Query: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNA-SRGYSSQ 329
+ VEGG + +D EG P II+ GIL + +++Y + G+A ++ Y
Sbjct: 282 ERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYP 341
Query: 330 PSISPSNIMISPGN---DEQDEGIFIRGIY------GEHTANSVSGDFSLNVDLGYVVRG 380
P I N + PG+ +E E I G Y G+ NS F + + GYV+R
Sbjct: 342 PIIRMRNTVFEPGDWSFEEMIEDIKF-GYYLVDFRGGQAQLNSA---FQVGIQEGYVIRN 397
Query: 381 GEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDGF 415
GEI P + + G E LK ++ +GK+ I GF
Sbjct: 398 GEIAEPIRDTSITGVAIEALKKISAVGKDFAIETGF 433
>sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13101.1| (AP001119) tldD
protein [Buchnera sp. APS]
Length = 483
Score = 84.7 bits (206), Expect = 2e-15
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 257 LGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGI 316
+G +VAS TIIDD T++ S S D EG PG + +I+ GIL ++ D+ L+G+
Sbjct: 287 IGKKVASELCTIIDDGTIKNQRGSLSIDDEGTPGQKNILIENGILKKYMQDKLNARLMGV 346
Query: 317 GSTGNASR-GYSSQPSISPSNIMISPGNDEQDEGIFIRGI-YGEHTAN-------SVSGD 367
STGN R YS P +N + G + D+ I+ + YG + N SG
Sbjct: 347 KSTGNGRRESYSCLPMPRMTNTYMLSGKSKLDD--IIKSVDYGIYAVNFSGGQVDITSGK 404
Query: 368 FSLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDG 414
F + Y+++ G+I P K L+G+ E+++ ++ +G ++++ +G
Sbjct: 405 FVFSTSEAYLIKNGKIVTPIKNTTLIGSGLEVMQKISMVGDDLKMDEG 452
>pir||S75708 hypothetical protein sll0887 - Synechocystis sp. (strain PCC 6803)
>gi|1001203|dbj|BAA10443.1| (D64003) hypothetical
protein [Synechocystis sp.]
Length = 446
Score = 83.5 bits (203), Expect = 4e-15
Identities = 83/298 (27%), Positives = 131/298 (43%), Gaps = 22/298 (7%)
Query: 144 GLS--TSERGIMNSNGTEGREERTLLAFGLYVFEKSKGTGSYS----KSFRRLPKLESE- 196
GLS T+ER +NS G + E R+ + LY + +G S K R L L+ +
Sbjct: 148 GLSEQTTERFYLNSAGAKRYECRSYASIYLYSRAEQEGKKPRSAGEMKISRDLASLDIDG 207
Query: 197 -IEGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFT 255
++ V+EK L + R + ++ +A S+L F +A+++ K+S T
Sbjct: 208 CLQTVKEKTLSHLDY----RPIPTGKYTVVFSARAFLSLLGAFSNLYNAQSILDKQSLAT 263
Query: 256 E--LGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHL 313
+ LG +AS L + DD G I++ FDGEG P R IIK G+L+ L
Sbjct: 264 KETLGTAIASELLCVSDDALHPGNISAERFDGEGTPTRRVDIIKNGVLTGLLHSAGTAKR 323
Query: 314 IGIGSTGNASRGYSSQPS------ISPSNIMISPGNDEQDEGIFIRGIYGEHT-ANSVSG 366
TG+A+ G S S D+ + ++I + H NS+ G
Sbjct: 324 FDTQPTGHANIGSKITVGAHFYHVYSEKTAEKSYSLDQAENVVYIDKLQALHAGVNSLQG 383
Query: 367 DFSLNVDLGYVVRGGEIRPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFASPKITTVG 424
FSL D G++V GE + + G+ E+LK + + E E+ G P + G
Sbjct: 384 SFSLPFD-GWLVNKGEKQSIDAATVAGDFLEVLKTIVYLEPEAEVTPGGVCPLVWVEG 440
>pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07784.1|
(AE000768) TldD protein [Aquifex aeolicus]
Length = 404
Score = 82.7 bits (201), Expect = 7e-15
Identities = 99/391 (25%), Positives = 177/391 (44%), Gaps = 28/391 (7%)
Query: 22 EIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTR-EQLE 80
EI++ S ++ + +V G E G+GLR++ GK + Y + F ++L
Sbjct: 22 EIFYEKSRTTRMHLEDRKIDKVTHGYDE---GVGLRLIKNGKTYYGYTTNPTFENLKELA 78
Query: 81 RLVKRAYKIAKVA-GSIY-PGFPVPKKFPNVRGL-YDDKIRNLSTEEIVEYGTELVDVPP 137
+++ R VA G Y G+ P+ L + +I + E+ +G ++ V
Sbjct: 79 KILARGEGHGPVAIGKRYIQGYTEVLIDPDKESLKFRAEILRRADEKARSFGDKIKQVL- 137
Query: 138 NAEASIGLSTSERGIMNSNGTEGREERTLLAFGLYVFEKSKGT---GSYSKSFRRLPKLE 194
A + T E ++N+ G + + + F + V T G S RR ++
Sbjct: 138 ---AVLMDKTREIMVINTLGETAEDTQKRVVFFVEVVASDGETLQRGYESLGGRRGFEIF 194
Query: 195 SEI--EGVREKALWEFEMSSKARKLEKYNGEIILEPKAVASILSIFLPN-VSARNVYLKR 251
+E E + EKA + A+ +++ +A +++ + + + A V
Sbjct: 195 NETPPEVIAEKAAKRALLMLSAKPAPAGTFTVVMSSQAGGTMIHEAVGHGLEADLVQQGL 254
Query: 252 SRFT-ELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKY 310
S + +LG +VAS +T+IDD T+ S++ D EG P RK +IK+G+L ++ D+
Sbjct: 255 SVYAGKLGEKVASELVTVIDDATLPYHNGSFTVDDEGVPAQRKVLIKDGVLVGYMYDRLR 314
Query: 311 GHLIGIGSTGNASR-GYSSQPSISPSNIMISPGNDEQDE-------GIFIRGIYGEHTAN 362
G+ STGN R Y+ P + +N I G D ++ G+ + + G N
Sbjct: 315 AMKDGVESTGNGRRQSYAHIPIVRMTNTFIDKGQDNPEDIIKDTKKGVLVVKM-GGGEVN 373
Query: 363 SVSGDFSLNVDLGYVVRGGEIR-PFKGNMLV 392
+V+GDF V GY++ GEI P +G L+
Sbjct: 374 TVTGDFVFEVMEGYMIENGEITYPIRGATLI 404
>gi|11498263 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123065|sp|O29602|Y655_ARCFU HYPOTHETICAL PROTEIN
AF0655 >gi|7429834|pir||G69331 conserved hypothetical
protein AF0655 - Archaeoglobus fulgidus
>gi|2649963|gb|AAB90585.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 425
Score = 82.7 bits (201), Expect = 7e-15
Identities = 94/317 (29%), Positives = 148/317 (46%), Gaps = 26/317 (8%)
Query: 118 RNLSTEEIVEYGTELVDVPPNAEASIGLSTSE-RGIMNSNGTEGRE-ERTLLAFGLYVFE 175
+++S EE VE +L + + S L E R ++ + G E E +L G+ +
Sbjct: 90 QDMSIEEKVELLKDLEKIIRDVCVSTKLVYFENRRVLQYRDSCGSEVEYEVLRTGVSIMG 149
Query: 176 KSKGTGSYSKSFRRLPKLESEI-EGVREKALWEFEMSSK-ARKLEKYNGEI-ILEPKAVA 232
KG S R++ E+ +GV EKA E+ K L +GE+ ++ ++A
Sbjct: 150 VGKGRSLQFLSKRQMRVGGYEVLDGVDEKAYEIVEVLPKLVNALAPPSGEMSVVMDSSLA 209
Query: 233 SIL--SIFLPNVSARNVY----LKRSRFTELGIEVASGGLTIIDDPTVEGGINSYSFDGE 286
+ F V A +V + + R E +VA +TIIDDPT+ + FD E
Sbjct: 210 GVFVHEAFGHAVEADHVLQGATVLKGRLNE---KVADESVTIIDDPTLPE-FGFFPFDDE 265
Query: 287 GNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIMISPGNDEQ 346
G +K I+++G+L SFL ++ +G G GNA P + SN I +
Sbjct: 266 GVRAEKKVIVEDGVLKSFLHSRETAKKLG-GVAGNARSQGVDVPIVRMSNTYIDTHHYSF 324
Query: 347 DE-------GIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEIRPFKGNM-LVGNVFEM 398
DE G+++ G G T N +G F N GY+++ GE+ ++ L GN E+
Sbjct: 325 DELLEECRDGVYLVGSRGGET-NPATGYFHFNAQYGYLIKNGELAEMVRDVSLSGNTLEI 383
Query: 399 LKNVTNIGKEIEILDGF 415
L+NV IG+EIE GF
Sbjct: 384 LRNV-KIGREIEFDPGF 399
>pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (strain Orsay)
>gi|5458676|emb|CAB50163.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 443
Score = 81.9 bits (199), Expect = 1e-14
Identities = 73/268 (27%), Positives = 124/268 (46%), Gaps = 20/268 (7%)
Query: 152 IMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
+ SNG E +E T + + F +G + S R L K + E G + + + +
Sbjct: 155 LTTSNGVEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGRKAGEIAKMARN 214
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFT-ELGIEVASGGLTIID 270
+ K+ ++I +P A A++LS SA V S F +L +VAS +TI D
Sbjct: 215 PEQGPEGKF--DVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKD 272
Query: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQP 330
+ G + FD EG P +I+ G L ++L + G +T NA
Sbjct: 273 IGNLPNGYGTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAG------- 325
Query: 331 SISPS--NIMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFS-LNVDLGYVVRG 380
ISP NI++ PG+ +DE GI+I ++ N ++GDFS + D +++
Sbjct: 326 LISPRAWNIVLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIEN 385
Query: 381 GEIRPFKGNMLVGNVFEMLKNVTNIGKE 408
GE++P + + N+ +L+N+ + KE
Sbjct: 386 GELKPIRNIRVSDNMLRILQNIVGLTKE 413
>pir||D83086 conserved hypothetical protein PA4474 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950711|gb|AAG07862.1|AE004861_3 (AE004861)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 480
Score = 81.1 bits (197), Expect = 2e-14
Identities = 96/395 (24%), Positives = 167/395 (41%), Gaps = 26/395 (6%)
Query: 43 VERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVA--GSIYP-G 99
V+ GSF + G+G+R + K GF+Y + T E L++ A I++ GS+
Sbjct: 57 VKEGSFNLDQGVGVRAQSGEKTGFAYSNA--ITAEALKQAAVAARSISRAGQNGSVQAFK 114
Query: 100 FPVPKKFPNVRGLYDDKIRNLSTEEI--VEYGTELVDVPPNAEASIGLSTSERGIM--NS 155
VP + D R E + ++ T +D P + ++ ++ I+ S
Sbjct: 115 AVVPARLYAGENPLDVLSRAEKVELLKQIDAATRALD-PRIQQVTVSMAGVWEQILVAAS 173
Query: 156 NGTEGREERTLLAFGLYVFEKSKGT------GSYSKSFRRLPKLESEIEGVREKALWEFE 209
+G+ + R L+ F + V + G G ++ R E G +AL +
Sbjct: 174 DGSLAADIRPLVRFNVSVIVEQNGRRERGGHGGGGRTDYRYFLQEDRAMGYAREALRQAL 233
Query: 210 MSSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTE--LGIEVASGGLT 267
++ +A +++ +L + + + K S +G +VAS T
Sbjct: 234 VNLEAIPAPAGTLPVVMGAGWSGVLLHEAVGHGLEGDFNRKGSSAYSGRVGEKVASSLCT 293
Query: 268 IIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASR-GY 326
I+DD T+ G S S D EG P +I+ G+L ++ D+ L+G+ TGN R Y
Sbjct: 294 IVDDGTLAGRRGSLSVDDEGTPSNCNVLIENGVLKGYMQDKLNARLMGVARTGNGRRESY 353
Query: 327 SSQPSISPSNIMISPGNDEQDEGI--FIRGIY----GEHTANSVSGDFSLNVDLGYVVRG 380
+ P +N + G + E I +GIY G + SG F + Y++
Sbjct: 354 AHLPMPRMTNTYMLAGESDPQEIIASVEKGIYCANLGGGQVDITSGKFVFSTSEAYLIEN 413
Query: 381 GEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDG 414
G I P KG L+GN E + V+ +G ++ + G
Sbjct: 414 GRITTPVKGATLIGNGPEAMSRVSMVGNDLALDSG 448
>pir||D72342 tldD protein - Thermotoga maritima (strain MSB8)
>gi|4981251|gb|AAD35808.1|AE001743_10 (AE001743) tldD
protein [Thermotoga maritima]
Length = 499
Score = 78.8 bits (191), Expect = 1e-13
Identities = 49/162 (30%), Positives = 86/162 (52%), Gaps = 8/162 (4%)
Query: 256 ELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIG 315
+LG +VA+ ++ +DD T+ G S + D EG P R +I +G+L +L D+ +G
Sbjct: 303 KLGQKVAAECVSAVDDATIPNGWGSANVDDEGTPTQRTLLIDKGVLVGYLVDKLGERRMG 362
Query: 316 IGSTGNASR-GYSSQPSISPSNIMISPGNDEQDEGIFIR--GIY----GEHTANSVSGDF 368
+ STG+ R Y+ P+ SN I PG+ +E I G+Y G + N +G+F
Sbjct: 363 MKSTGSGRRQDYTFPPTSRMSNTFILPGDYHPEEIIAATEYGLYAKTMGGGSVNPATGEF 422
Query: 369 SLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEI 409
+ V Y++ G I +P +G L+G E+++ + +G ++
Sbjct: 423 NFAVSEAYLIEKGRITKPVRGATLIGKGHEIIQKIDMVGNDL 464
>sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD protein - Escherichia
coli (strain K-12) >gi|606183|gb|AAA58046.1| (U18997)
ORF_f481 [Escherichia coli] >gi|1732437|dbj|BAA07913.1|
(D44451) TldD protein [Escherichia coli]
>gi|1789640|gb|AAC76276.1| (AE000403) suppresses
inhibitory activity of CsrA [Escherichia coli K12]
Length = 481
Score = 78.8 bits (191), Expect = 1e-13
Identities = 89/411 (21%), Positives = 168/411 (40%), Gaps = 54/411 (13%)
Query: 43 VERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPV 102
++ GS+ + G+G+R ++ K GF+Y + LE+ + A I + +G G
Sbjct: 55 IKDGSYNIDQGVGVRAISGEKTGFAY--ADQISLLALEQSAQAARTIVRDSGD---GKVQ 109
Query: 103 PKKFPNVRGLYD--DKIRNLSTEEIVEYGTELVDVPPNAEASIGLSTSERG-------IM 153
LY D ++++S EE ++ + V A+ + T+ +
Sbjct: 110 TLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVA 169
Query: 154 NSNGTEGREERTLLAFGLYVFEK---------SKGTGSYSKSFRRLPKLESEIEGVREKA 204
++GT + R L+ + V + S G G + F ++++G
Sbjct: 170 ATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEF-----FLADLDGEVRAD 224
Query: 205 LWEFEMSSKARKLEKYNGEIILEPKAVASI-LSIFLPNVSARNV--YLKRSRFTELGIEV 261
W + +A ++ N + P + L P V + F G V
Sbjct: 225 AW----AKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSV 280
Query: 262 ASGGL---------TIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGH 312
SG + T++DD T+ S + D EG PG +I+ GIL ++ D+
Sbjct: 281 FSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNAR 340
Query: 313 LIGIGSTGNASR-GYSSQPSISPSNIMISPGNDEQDE-------GIFIRGIYGEHTANSV 364
L+G+ TGN R Y+ P +N + PG E GI+ +G +
Sbjct: 341 LMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPN-FGGGQVDIT 399
Query: 365 SGDFSLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDG 414
SG F + Y++ G++ +P KG L+G+ E ++ ++ +G ++++ +G
Sbjct: 400 SGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNG 450
>pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii
>gi|3257260|dbj|BAA29943.1| (AP000003) 443aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 443
Score = 78.4 bits (190), Expect = 1e-13
Identities = 72/268 (26%), Positives = 124/268 (45%), Gaps = 20/268 (7%)
Query: 152 IMNSNGTEGREERTLLAFGLYVFEKSKGTGSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
+ SN E +E T + + F +G + S R L K + E G + + + +
Sbjct: 155 LTTSNDVEAFDEGTGIEISVRAFIGDLESGHGTNSVRVLKKFDPESAGRKAGEIAKLARN 214
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFT-ELGIEVASGGLTIID 270
+ ++ ++I +P A A++LS SA V S F +L +VAS +TI D
Sbjct: 215 PEQGPEGRF--DVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEIVTIKD 272
Query: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQP 330
+ G + FD EG P +I +GIL ++L + G +T NA
Sbjct: 273 VGNLPNGYATRKFDDEGVPTKETILIHKGILKTYLFNTSLAKKYGRETTANAG------- 325
Query: 331 SISPS--NIMISPGNDEQDE-------GIFIRGIYGEHTANSVSGDFS-LNVDLGYVVRG 380
I+P NI++ PG+ +DE GI+I ++ N ++GDFS + D +++
Sbjct: 326 LIAPRAWNIVLEPGDYTKDELFQEVKKGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIEN 385
Query: 381 GEIRPFKGNMLVGNVFEMLKNVTNIGKE 408
GE++P + + N+ +L+NV + KE
Sbjct: 386 GELKPIRNIRVSDNMLRILQNVVALSKE 413
>pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654844|gb|AAF93595.1| (AE004129) tldD
protein [Vibrio cholerae]
Length = 481
Score = 76.5 bits (185), Expect = 5e-13
Identities = 50/164 (30%), Positives = 84/164 (50%), Gaps = 8/164 (4%)
Query: 256 ELGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIG 315
++G +V S TI+DD T++ S + D EG G +I++GIL ++ D+ L+G
Sbjct: 284 KVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGVSGQYNVLIEKGILKGYIQDKLNARLMG 343
Query: 316 IGSTGNASR-GYSSQPSISPSNIMISPGNDEQDEGI--FIRGIY----GEHTANSVSGDF 368
+ TGN R Y+ P +N + PG +E I +GIY G + SG F
Sbjct: 344 VAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPEEIIASVKKGIYAPNFGGGQVDITSGKF 403
Query: 369 SLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEI 411
+ Y++ G+I RP KG L+G+ E ++ V+ +G ++ +
Sbjct: 404 VFSASEAYLIENGKITRPIKGATLIGSGIEAMQQVSMVGNDLAL 447
>dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity of the cabon
storage regulator (CsrA) [Bacillus halodurans]
Length = 432
Score = 76.1 bits (184), Expect = 7e-13
Identities = 73/274 (26%), Positives = 129/274 (46%), Gaps = 23/274 (8%)
Query: 155 SNGTEGREE-RTLLAFGLYVFEKSKGTGSYSKSFRR-LPKLESEIEGVREKALWEFEMSS 212
++ +E +E+ RT Y+ + +G S R L + + E ++E L+ +
Sbjct: 128 TSSSELKEDIRTCFMLDFYITVQKEGRTKQSNLTRSWLSPINVQEEDLQELVLYTANAAM 187
Query: 213 K---ARKLEKYNGEIILEPKAVASIL-SIFLPNVSARNVYLKRSRFTE-LGIEVASGGLT 267
+ AR + +IL P A I + + A + +S F + LG V +T
Sbjct: 188 EKLDARPFPSGSYALILGPLAAPGIFHEVVGHGLEADIASIPQSAFHQRLGAMVGCEKVT 247
Query: 268 IIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGH-LIGIGSTGNASRGY 326
IIDDPT EG SYS D EG + +I++G + ++L+ GH G G N Y
Sbjct: 248 IIDDPTKEGLPGSYSLDDEGTIAQQTTLIEKGRVVNYLSHLHTGHPTNGHGRVIN----Y 303
Query: 327 SSQPSISPSNIMISPGNDEQDE-------GIFI-RGIYGEHTANSVSGDFSLNVDLGYVV 378
P + SN + PG D+ +E G+++ + I G+ N ++G+F ++V GY++
Sbjct: 304 QHLPLVRMSNTFLLPGTDDPEEMVSDTEVGLYVKKAINGD--VNMITGEFEIHVAEGYLI 361
Query: 379 RGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEI 411
G+I P L G+ ++L+++ +G + I
Sbjct: 362 EKGQITSPILPTTLKGDGQKLLQSIDRVGNDFAI 395
>sp|P57191|PMBA_BUCAI PMBA PROTEIN HOMOLOG >gi|10038774|dbj|BAB12809.1| (AP001118) pmbA
protein [Buchnera sp. APS]
Length = 446
Score = 74.9 bits (181), Expect = 2e-12
Identities = 101/433 (23%), Positives = 179/433 (41%), Gaps = 51/433 (11%)
Query: 5 VEKLIKILEGSNLNLEWEIYWGVSSSSSFKFRKIRKVEVERGSFEVSGGIGLRVLTQGKI 64
V+ +K+ + N ++E I + S + +R VE F GG+ + V K
Sbjct: 18 VKNTLKLSKNINASVEVFIKKTIGISVN-----VRNNVVENVEFNSDGGLFITVYN--KF 70
Query: 65 GFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPNVRGLYDDKIRNLSTEE 124
+S +F+ + ++ ++ A I+K + S + GL D K + E
Sbjct: 71 SKGSVSSKDFSIKNIKNMLDIAINISKYSSSDF-----------FSGLPDIKFLCFHSME 119
Query: 125 IVEYGTELVDVPPNAEASI----GLSTSERGIMNSNGTEGREERTLLAFG--LYVFEKSK 178
+ + ++ + SI S++ I+NS G+ T+ FG L V EK K
Sbjct: 120 LDLFHPWEFNIENAIKMSILSEKSAFESDKRIVNSEGSFLNSHTTINVFGNSLGVLEKYK 179
Query: 179 GTG-------------------SYSKSFRRLPKLESEIEGVREKALWEFEMSSKARKLEK 219
T YS S R ++ EI G + + S RK++
Sbjct: 180 STRYSNYTCMIAKDKNSMQRDFDYSLSRRIDDLIKPEILGQKTAKRAISRLGS--RKIQT 237
Query: 220 YNGEIILEPKAVASILSIFLPNVSARNVYLKRS-RFTELGIEVASGGLTIIDDPTVEGGI 278
II + S +S NVY K + +L +++ L I ++P ++ G+
Sbjct: 238 MRSPIIFSSEISHMFFSHLASAISGDNVYQKSTFLINDLKMKIFPDWLDIEENPHLKRGL 297
Query: 279 NSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSISPSNIM 338
S FD EG K+IIK GIL ++L + + + STGN G +S NI
Sbjct: 298 GSKPFDNEGVATEIKYIIKAGILQTWLLNCYNARKLKLDSTGNC--GGIHNWLVSNQNIS 355
Query: 339 ISPGNDEQDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEIR-PFKGNMLVGNVFE 397
+ D+GI + + G+ + ++G++S +G+ V G+I P + GN+
Sbjct: 356 FEELLKKMDQGILVTELMGQ-GVDIINGNYSRGA-VGFWVEKGKISYPINEITISGNLRN 413
Query: 398 MLKNVTNIGKEIE 410
M N+ +I +++
Sbjct: 414 MWNNIVSISSDVD 426
>pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9106089|gb|AAF83937.1|AE003949_1 (AE003949) TldD
protein [Xylella fastidiosa]
Length = 485
Score = 73.4 bits (177), Expect = 5e-12
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 257 LGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGI 316
+G VAS G+TI+DD T++G S + D EG P +I++G+L ++ D L+G+
Sbjct: 288 IGERVASPGVTIVDDGTLDGRRGSLNIDDEGTPTQCTTLIEDGVLVGYMQDTLNARLMGV 347
Query: 317 GSTGNASR---GYSSQPSISPSNIMISPGNDEQDEGIFIRGIY----GEHTANSVSGDFS 369
STGN R + + P ++ + + + E+ +G+Y G + SG +
Sbjct: 348 ASTGNGRRESFAHLTMPRMTNTYMRAGVHSREEMIRSVKKGLYAVNFGGGQVDITSGKYV 407
Query: 370 LNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEI 411
+ Y++ G + P KG L+GN E ++ V IG ++ +
Sbjct: 408 FSATEAYLIEDGRVTAPIKGATLIGNGPETMQRVRMIGDDLAL 450
>sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C64186 pmbA protein -
Haemophilus influenzae (strain Rd KW20)
>gi|1574709|gb|AAC22807.1| (U32795) pmbA protein (pmbA)
[Haemophilus influenzae Rd]
Length = 451
Score = 71.4 bits (172), Expect = 2e-11
Identities = 93/400 (23%), Positives = 163/400 (40%), Gaps = 47/400 (11%)
Query: 39 RKVEVERGSFEVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYP 98
R E+E F G +G+ V + G + S S+ + ++ V+ A IAK
Sbjct: 51 RLQEIENVEFTNDGALGISVYMGQQKGNA--STSDLSESAIKNAVEAALAIAKYTSP--- 105
Query: 99 GFPVPKKFPNVRGLYDDKIRNLSTEEIVEYGTELVDVPPNAEASI-----GLSTSERGIM 153
+ GL D + ++ Y +DV E ++ L ER I+
Sbjct: 106 --------DDCTGLADKDLMAFDAPDLELYHAADIDVDKATELALQAEQAALQADER-II 156
Query: 154 NSNGTEGREERTLLAFG-LYVFEKSKGTGSYSKSFRRLPKLESEIEGVRE---------- 202
NSNG + +G + +S + YS S + +E +E E
Sbjct: 157 NSNGASFNSHTGVKVYGNSHGMLQSYLSSRYSLSCSVIGGVEDALENDYEYTISREFDKL 216
Query: 203 -KALWEFEMSSKA-------RKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRF 254
+W E +K +KL +I I+S F +S ++Y K S
Sbjct: 217 QSPIWVGENCAKKVVSRLNPQKLSTREVPVIFLNDVATGIISHFAAAISGGSLYRKSSFL 276
Query: 255 TE-LGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHL 313
+ LG +V +I + P + + S FD EG + I++ GIL ++L G
Sbjct: 277 LDHLGKQVLPDWFSISERPHLLRRLASTPFDSEGVRTQDREIVENGILQTYLVTSYSGKK 336
Query: 314 IGIGSTGNAS--RGYSSQPSISPSNIMISPGNDEQDEGIFIRGIYGEHTANSVSGDFSLN 371
+G+ STG+A + +P+++ ++ + G+ + + G+ N V+GD+S
Sbjct: 337 LGMSSTGHAGGIHNWLVKPNLTGG---LTALLRQMGTGLLVTDVMGQ-GVNIVTGDYSRG 392
Query: 372 VDLGYVVRGGEIR-PFKGNMLVGNVFEMLKNVTNIGKEIE 410
G+ V GEI+ P + G + +MLKN+ + +IE
Sbjct: 393 AS-GFWVENGEIQYPVAEITIAGQLQDMLKNMLAVADDIE 431
>sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||S13730 pmbA protein -
Escherichia coli >gi|42440|emb|CAA38091.1| (X54152) pmbA
is involved in the production of antibiotic MccB17
[Escherichia coli] >gi|537077|gb|AAA97132.1| (U14003)
pmbA gene product [Escherichia coli]
>gi|1732440|dbj|BAA07915.1| (D44452) TldE protein
[Escherichia coli] >gi|1790682|gb|AAC77192.1| (AE000494)
maturation of antibiotic MccB17, see tld genes
[Escherichia coli K12]
Length = 450
Score = 70.2 bits (169), Expect = 4e-11
Identities = 53/198 (26%), Positives = 94/198 (46%), Gaps = 6/198 (3%)
Query: 215 RKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTE-LGIEVASGGLTIIDDPT 273
RKL +I + + + ++ +VY K + + LG ++ LTI + P
Sbjct: 237 RKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPH 296
Query: 274 VEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQPSIS 333
+ G+ S FD EG R+ IIK+GIL+ +L +G+ STG+A G I+
Sbjct: 297 LLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHA--GGIHNWRIA 354
Query: 334 PSNIMISPGNDEQDEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGEIR-PFKGNMLV 392
+ E G+ + + G+ ++++GD+S G+ V GEI+ P +
Sbjct: 355 GQGLSFEQMLKEMGTGLVVTELMGQ-GVSAITGDYSRGA-AGFWVENGEIQYPVSEITIA 412
Query: 393 GNVFEMLKNVTNIGKEIE 410
GN+ +M +N+ +G +IE
Sbjct: 413 GNLKDMWRNIVTVGNDIE 430
>pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9950709|gb|AAG07860.1|AE004861_1 (AE004861)
PmbA protein [Pseudomonas aeruginosa]
Length = 449
Score = 70.2 bits (169), Expect = 4e-11
Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 24/269 (8%)
Query: 154 NSNGTEGREERTLLAFGLYVFEKSKGT--GSYSKSFRRLPKLESEIEGVREKALWEFEMS 211
NS+G G T + + + +G Y R + + E + +A
Sbjct: 173 NSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASR 232
Query: 212 SKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTE--LGIEVASGGLTII 269
AR ++ ++ P+ + FL +S ++Y ++S F E LG + L+I
Sbjct: 233 LGARPVQTAEVPVLFAPEIAVGLFGHFLGAISGGSLY-RKSSFLEGALGQRLFPEWLSID 291
Query: 270 DDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNASRGYSSQ 329
+ P + G + S SFD +G K ++ G L S++ G +G+ ST NA
Sbjct: 292 ERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAG------ 345
Query: 330 PSISPSNIMISPGNDEQ-------DEGIFIRGIYGEHTANSVSGDFSLNVDLGYVVRGGE 382
N+ +S G+++Q + G+ + + G+ N V+GD+S GY V GE
Sbjct: 346 ---GVHNLFVSHGDEDQAALIRRMERGLLVTELMGQ-GVNLVTGDYSRGA-AGYWVENGE 400
Query: 383 IR-PFKGNMLVGNVFEMLKNVTNIGKEIE 410
I+ P + + N+ ++ + + +GK+IE
Sbjct: 401 IQFPVQEVTIAANLRDLFRRIVAVGKDIE 429
>pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment)
Length = 313
Score = 69.9 bits (168), Expect = 5e-11
Identities = 47/170 (27%), Positives = 79/170 (45%), Gaps = 9/170 (5%)
Query: 257 LGIEVASGGLTIIDDPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGI 316
+G +VA+ G+T++DD T+ S S D EG P R +I++GIL ++ D++ L+ +
Sbjct: 115 MGRQVAAKGVTVVDDGTIASRRGSLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMNM 174
Query: 317 GSTGN-ASRGYSSQPSISPSNIMISPGNDEQDEGIFI-------RGIYGEHTANSVSGDF 368
TGN A+R Y+ P +N + G G+ R +G + SG +
Sbjct: 175 KPTGNAAARRYAHVPMPRMTNTYMLRGRSRSGRGVLASVKNAASRANFGGGQVDITSGKY 234
Query: 369 SLNVDLGYVVRGGEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDGFAS 417
Y G+ P +G ML+GN L + IG ++ + G +
Sbjct: 235 VSQCTEAYKSENGKSGGPAEGRMLIGNGPTDLHRIRMIGNDLALDTGIGT 284
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.137 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163390276
Number of Sequences: 2977
Number of extensions: 7309949
Number of successful extensions: 12846
Number of sequences better than 1.0e-10: 41
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 12768
Number of HSP's gapped (non-prelim): 53
length of query: 427
length of database: 189,106,746
effective HSP length: 59
effective length of query: 368
effective length of database: 153,796,013
effective search space: 56596932784
effective search space used: 56596932784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 166 (69.1 bits)