BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0156 (PAB0156) DE:Hypothetical protein
(199 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (st... 386 e-106
pir||C71249 hypothetical protein PH0250 - Pyrococcus horikoshii ... 268 3e-71
pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii ... 108 7e-23
pir||A75088 hypothetical protein PAB1640 - Pyrococcus abyssi (st... 101 7e-21
pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (st... 96 2e-19
pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii ... 92 3e-18
pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (st... 90 2e-17
pir||E71165 hypothetical protein PH0522 - Pyrococcus horikoshii ... 89 4e-17
pir||B71056 hypothetical protein PH1144 - Pyrococcus horikoshii ... 87 2e-16
pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii ... 81 8e-15
pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (st... 68 6e-11
>pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (strain Orsay)
>gi|5457663|emb|CAB49154.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 199
Score = 386 bits (981), Expect = e-106
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MDILSLFKIGETVLVEYSGTSRVEALFYNLIARAGLPVLVDDIFDTYYEFYVRLKVAGFD 60
MDILSLFKIGETVLVEYSGTSRVEALFYNLIARAGLPVLVDDIFDTYYEFYVRLKVAGFD
Sbjct: 1 MDILSLFKIGETVLVEYSGTSRVEALFYNLIARAGLPVLVDDIFDTYYEFYVRLKVAGFD 60
Query: 61 VTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIHKL 120
VTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIHKL
Sbjct: 61 VTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIHKL 120
Query: 121 IILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVTER 180
IILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVTER
Sbjct: 121 IILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVTER 180
Query: 181 GVIIKKAINKEIIGEVIPL 199
GVIIKKAINKEIIGEVIPL
Sbjct: 181 GVIIKKAINKEIIGEVIPL 199
>pir||C71249 hypothetical protein PH0250 - Pyrococcus horikoshii
>gi|3256639|dbj|BAA29322.1| (AP000001) 207aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 207
Score = 268 bits (678), Expect = 3e-71
Identities = 126/192 (65%), Positives = 160/192 (82%), Gaps = 1/192 (0%)
Query: 6 LFKIGETVLVEYSGTSRVEALFYNLIARAGLPVLVDDIFDTYYEFYVRLKVAGFDVTPLE 65
LF++GETVLVEYSGTSR E L Y ++ + LP++VDDI DTYYEFY RLKVAGFDV PLE
Sbjct: 11 LFRVGETVLVEYSGTSRAELLLYYIVNNSKLPIVVDDILDTYYEFYTRLKVAGFDVAPLE 70
Query: 66 DAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIHKLIILGS 125
+ V+KMGG++ IG V+G LNISKYVISEQEY I+ ++ KD P +N VLG+HKLI+LG+
Sbjct: 71 NVQVIKMGGTKDIGRVIGRLNISKYVISEQEYMEIVSQL-KDYPVINPVLGLHKLILLGN 129
Query: 126 ILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVTERGVIIK 185
EN+NVVKMVS+YVGR+ER+AFYF+N+ V+ KHS PILDLLEEV TS+LE+T+ G+IIK
Sbjct: 130 TFENINVVKMVSNYVGREERIAFYFVNRNVIEKHSSPILDLLEEVVTSILEITDSGIIIK 189
Query: 186 KAINKEIIGEVI 197
K+I EI G+++
Sbjct: 190 KSIKDEIAGKIV 201
>pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii
>gi|3256926|dbj|BAA29609.1| (AP000002) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 108 bits (266), Expect = 7e-23
Identities = 62/196 (31%), Positives = 117/196 (59%), Gaps = 10/196 (5%)
Query: 8 KIGETVLVEYSGTSRVEALFYNLIARA---GLPVLVDDIFDTYYEFYVRLKVAGFDVTPL 64
K GE++L+E++ S Y+LI A G ++V D+ DT + K+AG D +
Sbjct: 14 KFGESILIEFNSVSFPSFGVYSLINWAKEKGYNIVVVDVLDTLKIYMGHEKIAGLDTGII 73
Query: 65 EDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIHKLIILG 124
+D V+K+GG IG ++ + I++ + E E + ++IKK+K + ++LGI K++ L
Sbjct: 74 DDVTVIKIGGRIEIGKILARILITEEKLLENELTRLCKEIKKEKTII-IILGIEKVLSLY 132
Query: 125 S--ILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVTERGV 182
S L+ ++++ + S++G + + +FYFIN +++ P+L LLEE AT+V+++ ++G
Sbjct: 133 STYTLDVLSLINFILSFIGEEWKKSFYFINVDMMSHLPFPVLQLLEEFATTVIKIVKKGS 192
Query: 183 I----IKKAINKEIIG 194
+ + KA+N E+ G
Sbjct: 193 VLHYTVLKALNVELDG 208
>pir||A75088 hypothetical protein PAB1640 - Pyrococcus abyssi (strain Orsay)
>gi|5458518|emb|CAB50006.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 101 bits (249), Expect = 7e-21
Identities = 64/186 (34%), Positives = 105/186 (56%), Gaps = 13/186 (6%)
Query: 10 GETVLVEYSGTSRVEALFYNLIAR---AGLPVLVDDIFDTYYEFYVRLKVAGFDVTPLED 66
GETVL+E S VEA+ LI +PVL++DI DT+ + + + G + + +
Sbjct: 15 GETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMGVKLD-MSN 73
Query: 67 AMVVKMGGSRRIGNVVGELNI----SKYVISEQEYATIIEKIKKDKPFLNLVLGIHKLII 122
V+K+GGS +GN+ ++ + S Y+ Y +++ + F+++VLG +L +
Sbjct: 74 VKVMKIGGSEDVGNITSKIKMESDPSMYL---SRYGNEFQRVSPQENFIDIVLGFDRLFV 130
Query: 123 LGSILE-NMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVT-ER 180
L S M V+K SY RK R+AFY + KG++ SP L +LE +ATSVLE++ +R
Sbjct: 131 LDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSVLELSQDR 190
Query: 181 GVIIKK 186
++I K
Sbjct: 191 NLLIIK 196
>pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (strain Orsay)
>gi|5458663|emb|CAB50150.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 209
Score = 96.3 bits (236), Expect = 2e-19
Identities = 59/200 (29%), Positives = 110/200 (54%), Gaps = 8/200 (4%)
Query: 2 DILSLFKIGETVLVEYSGTSRVEALFYNLIA---RAGLPVLVDDIFDTYYEFYVRLKVAG 58
+I + K GE L+EY + + ++L++ G +++ D+FD+ + ++ G
Sbjct: 4 EIFNGIKFGEIALIEYDSNTTPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAELLG 63
Query: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIH 118
FD + + A VVK+GG GNVV +L +++Y E+ IE++ +DK + + LG
Sbjct: 64 FDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKTIV-IPLGTE 122
Query: 119 KLIILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVT 178
K++ L E ++ ++ VG K + AF+FIN +V +P IL +LEE T+V+ +
Sbjct: 123 KVLSLYPFREQLSFTNFLALRVGDKRKKAFHFINTDLVKAVAPQILPMLEESFTTVMRLK 182
Query: 179 ERG----VIIKKAINKEIIG 194
+ G +I+ K++N ++ G
Sbjct: 183 KYGKVEKLIVVKSLNPKLDG 202
>pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii
>gi|3257271|dbj|BAA29954.1| (AP000003) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 92.4 bits (226), Expect = 3e-18
Identities = 60/201 (29%), Positives = 107/201 (52%), Gaps = 8/201 (3%)
Query: 2 DILSLFKIGETVLVEYSGTSRVEALFYNLIARA---GLPVLVDDIFDTYYEFYVRLKVAG 58
D+ K GE +L EY+ T+ + + Y LI A G P+++ DIFD+ + + ++ G
Sbjct: 6 DLFEKSKFGELILFEYNSTTPLLFIVYPLIKWAREKGYPLVIFDIFDSLTIYTKQAEMLG 65
Query: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKP-FLNLVLGI 117
E A +VK+GG +GN++ +++I +Y E+ +EK ++ +++VLG
Sbjct: 66 IKDKLYEGANIVKIGGRMNLGNIILKISIIEYGPFEKTLEDTLEKAYGERENVISIVLGT 125
Query: 118 HKLIILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEV 177
K+ + ++ G + R AFYF+N ++ K SPP+ LLEE T+V+++
Sbjct: 126 EKIFSFYPFRDQFMFSNFLALKTGDRRRKAFYFVNVDLLEKISPPMGPLLEEEFTTVVKL 185
Query: 178 TERGVIIK----KAINKEIIG 194
T+ IK K++N E+ G
Sbjct: 186 TKEDNKIKMKVIKSLNPELDG 206
>pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (strain Orsay)
>gi|5457713|emb|CAB49204.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 89.7 bits (219), Expect = 2e-17
Identities = 58/201 (28%), Positives = 115/201 (56%), Gaps = 9/201 (4%)
Query: 1 MDILSLFKIGETVLVEYSGTSRVEALFYNLI--ARA-GLPVLVDDIFDTYYEFYVRLKVA 57
+ I+ K GET+L+E+ Y ++ ARA G V++ DI DT + ++L++
Sbjct: 9 LHIMDNVKFGETLLLEHDSQIIPGIGLYYILKWARARGYEVIIYDILDTLRVYRIQLELL 68
Query: 58 GFDVTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKD-KPFLNLVLG 116
G D + +E A V+K GG +GNVV L+ + E+EY + E + +D + + +VLG
Sbjct: 69 GLDPSIVEYAKVIKEGGRFYVGNVVKRLSEVGVSVREKEYEKVEEDLARDHENIVTIVLG 128
Query: 117 IHKLIILGSILEN-MNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVL 175
+ KL +L ++ M ++ + + G + R+ Y +N +V +P ++ LLEE+AT+V+
Sbjct: 129 LEKLFLLSQSKQDIMALLNSILKHSGDRRRLTIYTVNVDIVKVATPFVIPLLEEIATTVI 188
Query: 176 --EVTERGVIIK--KAINKEI 192
++ + ++++ K++++E+
Sbjct: 189 KTKIEDFKIVLRIPKSVDREL 209
>pir||E71165 hypothetical protein PH0522 - Pyrococcus horikoshii
>gi|3256927|dbj|BAA29610.1| (AP000002) 248aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 248
Score = 88.9 bits (217), Expect = 4e-17
Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 2 DILSLFKIGETVLVEYSGTSRVEALFYNLIARA---GLPVLVDDIFDTYYEFYVRLKVAG 58
DI K GE+VL+E+ S Y+L A G V V D+ DT + K+ G
Sbjct: 28 DIWKGTKFGESVLMEFDSLSFSPLGVYSLAYWARMKGFKVSVVDVLDTLKIYLSYAKMIG 87
Query: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNISKYVISEQEYATIIEKIKKDKPFLNLVLGIH 118
+ D V+K+GG GNV + I++ + E+E + +K + +VLGI
Sbjct: 88 LGTSIANDIEVIKLGGRIDSGNVSTRIPITEEKVMEKELMKLYPHEDNEKTIV-IVLGIE 146
Query: 119 KLIILGSIL--ENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLE 176
K + L L + ++ + + S+VG + +FYFIN ++ S P L +LEE++T+V+E
Sbjct: 147 KFLALWCKLLPDILSFLNFMLSFVGEEWMKSFYFINVDLMKDFSFPALSMLEELSTTVVE 206
Query: 177 VTERG----VIIKKAINKEI 192
+++RG I++KA+N EI
Sbjct: 207 ISKRGPVLHYIVRKALNPEI 226
>pir||B71056 hypothetical protein PH1144 - Pyrococcus horikoshii
>gi|3257561|dbj|BAA30244.1| (AP000005) 218aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 218
Score = 86.6 bits (211), Expect = 2e-16
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 2 DILSLFKIGETVLVEYSGTSRVEALFYNLIARAG---LPVLVDDIFDTYYEFYVRLKVAG 58
+ L K GET+LVE +EAL ++ A LPVL++DI DT+ + LK+
Sbjct: 6 EFLKSKKFGETILVENDSPLGIEALTSYILEYAKQEKLPVLIEDILDTFPIYIKHLKLMN 65
Query: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNI-SKYVISEQEYATIIEKIKKDKPFLNLVLGI 117
++ L V+K+GG IGNVV L + S I Y ++ + F++++ G+
Sbjct: 66 RELD-LSSVNVMKIGGVEDIGNVVSRLKLESDPSIYISRYTAEFSRVASKENFIDMIFGV 124
Query: 118 HKLIILGSI-LENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLE 176
+L L + ++ + Y RK+R+AFYF+ K ++ L LE++ TSVL
Sbjct: 125 DRLFTLDDTGVLTYEILASMKQYSTRKDRLAFYFVEKKIIENIPTNPLLALEDIGTSVLM 184
Query: 177 VT-ERGVIIKKAI 188
+ ER ++I K +
Sbjct: 185 LNQERDILIIKFV 197
>pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii
>gi|3257562|dbj|BAA30245.1| (AP000005) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 81.1 bits (197), Expect = 8e-15
Identities = 63/211 (29%), Positives = 105/211 (48%), Gaps = 14/211 (6%)
Query: 2 DILSLFKIGETVLVEYSGTSRV-EALFYNLIARA---GLPVLVDDIFDTYYEFYVRLKVA 57
++L K GET ++ Y G S + E + ++ A +PV++DD D LK+
Sbjct: 6 ELLDEIKFGETTILFYPGLSYIREFIILKILNHAKIRNIPVIIDDNLDALSIVSRNLKIL 65
Query: 58 GFDVTPLEDAMVVKMGGSRRIGNVVGELNISKYV-ISEQEYATIIEKIKKD---KPFLNL 113
GF +DA VVK GG + IG ++ + + + QEY+ I++ K+ + F+N+
Sbjct: 66 GF-AEDFQDAYVVKTGGRQNIGKIITRVRLHPDPRVYIQEYSENIQRSLKEHRIERFINI 124
Query: 114 VLGIHKLI-ILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVAT 172
VLGI L L S E +V + ++G K R AFY +N+ + P + L VAT
Sbjct: 125 VLGIEDLFRYLNSPHEVYLLVLAIQRFLGDKRRKAFYIVNENSLKVLPPQVYLELMRVAT 184
Query: 173 SVLEVTER----GVIIKKAINKEIIGEVIPL 199
+++ + I K++N +IG+ I L
Sbjct: 185 TIIRAVPNFITANLTIIKSLNPGLIGKEISL 215
>pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (strain Orsay)
>gi|5458519|emb|CAB50007.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 68.3 bits (164), Expect = 6e-11
Identities = 60/203 (29%), Positives = 92/203 (44%), Gaps = 12/203 (5%)
Query: 3 ILSLFKIGETVLVEYSGTSRVEALFYNLIARAG----LPVLVDDIFDTYYEFYVRLKVAG 58
++ K GET +V Y S V L N + +P+L+DD D+ L+V G
Sbjct: 4 VIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLG 63
Query: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNISKYV-ISEQEYATIIEKIKKDKPFLNLVLGI 117
D D VVK GG +GNVV + + Q YA +K D +LN+ LGI
Sbjct: 64 ID-EDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKID-GYLNISLGI 121
Query: 118 HKLI-ILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLE 176
L L S E ++ + ++G R A Y IN+ + I LE +A++V+
Sbjct: 122 EDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVIR 181
Query: 177 VTER----GVIIKKAINKEIIGE 195
++ + I K+ N E+IG+
Sbjct: 182 ASQDLEKVRITILKSTNIELIGK 204
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66852504
Number of Sequences: 2977
Number of extensions: 2619002
Number of successful extensions: 6305
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6283
Number of HSP's gapped (non-prelim): 12
length of query: 199
length of database: 189,106,746
effective HSP length: 56
effective length of query: 143
effective length of database: 155,591,474
effective search space: 22249580782
effective search space used: 22249580782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)