BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0159 (PAB0159) DE:Hypothetical protein
         (167 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75214 hypothetical protein PAB0159 - Pyrococcus abyssi (st...   348  2e-95
pir||C71450 hypothetical protein PH0258 - Pyrococcus horikoshii ...   252  1e-66

>pir||A75214 hypothetical protein PAB0159 - Pyrococcus abyssi (strain Orsay)
           >gi|5457669|emb|CAB49160.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 167
           
 Score =  348 bits (884), Expect = 2e-95
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MDVREIHEFLNRMWEETFRLREELREELEGFEVEEVTEVFNAYLYIDGEWKEMKYPHPAF 60
           MDVREIHEFLNRMWEETFRLREELREELEGFEVEEVTEVFNAYLYIDGEWKEMKYPHPAF
Sbjct: 1   MDVREIHEFLNRMWEETFRLREELREELEGFEVEEVTEVFNAYLYIDGEWKEMKYPHPAF 60

Query: 61  TIRPGGEVGATPQGFYFVFAFDKEDLKEEFVRDFIITFRQSFIYGMENFLEDFYNSTNPR 120
           TIRPGGEVGATPQGFYFVFAFDKEDLKEEFVRDFIITFRQSFIYGMENFLEDFYNSTNPR
Sbjct: 61  TIRPGGEVGATPQGFYFVFAFDKEDLKEEFVRDFIITFRQSFIYGMENFLEDFYNSTNPR 120

Query: 121 SFKEVWSDIVKSRERIINFEVDTDLNKDELKKELLKFINLAKRHGLL 167
           SFKEVWSDIVKSRERIINFEVDTDLNKDELKKELLKFINLAKRHGLL
Sbjct: 121 SFKEVWSDIVKSRERIINFEVDTDLNKDELKKELLKFINLAKRHGLL 167


>pir||C71450 hypothetical protein PH0258 - Pyrococcus horikoshii
           >gi|3256647|dbj|BAA29330.1| (AP000001) 168aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 168
           
 Score =  252 bits (638), Expect = 1e-66
 Identities = 118/168 (70%), Positives = 140/168 (83%), Gaps = 1/168 (0%)

Query: 1   MDVREIHEFLNRMWEETFRLREELREELEGFEVEEVTEVFNAYLYIDGEWKEMKYPHPAF 60
           MD+REIH FLN+MWEETF+LREELREEL+ FEVEEV EVFNAYLY+DG W+EMKYPHPAF
Sbjct: 1   MDIREIHNFLNKMWEETFKLREELREELKDFEVEEVGEVFNAYLYVDGRWEEMKYPHPAF 60

Query: 61  TIRPGGEVGATPQGFYFVFAFDKEDLKEEFVRDFIITF-RQSFIYGMENFLEDFYNSTNP 119
           TIRPGGEVGATPQGFYFVFAF K++L +EF+  F+  F +QSFIYGM+NFLEDFYN  NP
Sbjct: 61  TIRPGGEVGATPQGFYFVFAFSKDELTKEFIGRFLRKFKKQSFIYGMKNFLEDFYNPNNP 120

Query: 120 RSFKEVWSDIVKSRERIINFEVDTDLNKDELKKELLKFINLAKRHGLL 167
           R ++EV+  I  S E  INFEVDT  N++ELK++L +FI LA+   LL
Sbjct: 121 RGYEEVFEKIKNSDEEFINFEVDTSFNREELKRKLREFIELAREFDLL 168


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69068384
Number of Sequences: 2977
Number of extensions: 3126924
Number of successful extensions: 8261
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8258
Number of HSP's gapped (non-prelim): 2
length of query: 167
length of database: 189,106,746
effective HSP length: 51
effective length of query: 116
effective length of database: 158,583,909
effective search space: 18395733444
effective search space used: 18395733444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)