BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0161 (PAB0161) DE:Hypothetical protein
(204 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75214 hypothetical protein PAB0161 - Pyrococcus abyssi (st... 413 e-114
pir||F71450 hypothetical protein PH0261 - Pyrococcus horikoshii ... 380 e-105
pir||D69210 conserved hypothetical protein MTH828 - Methanobacte... 123 1e-27
sp|Q58390|Y981_METJA HYPOTHETICAL PROTEIN MJ0981 >gi|2128617|pir... 104 1e-21
gi|11499548 conserved hypothetical protein [Archaeoglobus fulgid... 83 2e-15
>pir||C75214 hypothetical protein PAB0161 - Pyrococcus abyssi (strain Orsay)
>gi|5457671|emb|CAB49162.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 204
Score = 413 bits (1049), Expect = e-114
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MEEYYVCPQCGSEDVEVIKERGREVTLRCNECGYVWIVTLPKLRKIPIIVSKHERSFREF 60
MEEYYVCPQCGSEDVEVIKERGREVTLRCNECGYVWIVTLPKLRKIPIIVSKHERSFREF
Sbjct: 1 MEEYYVCPQCGSEDVEVIKERGREVTLRCNECGYVWIVTLPKLRKIPIIVSKHERSFREF 60
Query: 61 VELPEGEVVKVGDIVETDEDEVRILSIELPGGKRVRKAKVEEIQTLWGESLTYPKVFGVS 120
VELPEGEVVKVGDIVETDEDEVRILSIELPGGKRVRKAKVEEIQTLWGESLTYPKVFGVS
Sbjct: 61 VELPEGEVVKVGDIVETDEDEVRILSIELPGGKRVRKAKVEEIQTLWGESLTYPKVFGVS 120
Query: 121 IYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADKIVRLM 180
IYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADKIVRLM
Sbjct: 121 IYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADKIVRLM 180
Query: 181 GHAIKGRARRKLKIYEGYDALQNT 204
GHAIKGRARRKLKIYEGYDALQNT
Sbjct: 181 GHAIKGRARRKLKIYEGYDALQNT 204
>pir||F71450 hypothetical protein PH0261 - Pyrococcus horikoshii
>gi|3256650|dbj|BAA29333.1| (AP000001) 206aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 206
Score = 380 bits (966), Expect = e-105
Identities = 177/203 (87%), Positives = 199/203 (97%)
Query: 1 MEEYYVCPQCGSEDVEVIKERGREVTLRCNECGYVWIVTLPKLRKIPIIVSKHERSFREF 60
MEEYY+CPQCGSEDVEVIKERGRE+TL+CNECGYVWI+TLPK+ ++PIIVSKHERSF++F
Sbjct: 1 MEEYYICPQCGSEDVEVIKERGREITLKCNECGYVWIITLPKVVRVPIIVSKHERSFKKF 60
Query: 61 VELPEGEVVKVGDIVETDEDEVRILSIELPGGKRVRKAKVEEIQTLWGESLTYPKVFGVS 120
ELP+GE +KVGDI+E ++DEVRILSIELPGGKRV+KAKVEEIQTLWGESLTYPKVFGVS
Sbjct: 61 AELPKGETIKVGDIIELEDDEVRILSIELPGGKRVKKAKVEEIQTLWGESLTYPKVFGVS 120
Query: 121 IYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADKIVRLM 180
IYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKT+KKLMRSGKAKADKIVRLM
Sbjct: 121 IYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTDKKLMRSGKAKADKIVRLM 180
Query: 181 GHAIKGRARRKLKIYEGYDALQN 203
GHA++GRARRKLK+YEGY+AL++
Sbjct: 181 GHAVRGRARRKLKVYEGYEALES 203
>pir||D69210 conserved hypothetical protein MTH828 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621918|gb|AAB85326.1| (AE000860) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 202
Score = 123 bits (306), Expect = 1e-27
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 11/191 (5%)
Query: 7 CPQCGSEDVEVIKERGRE--------VTLRCNECGYVW--IVTLPKLRKIPIIVSKHERS 56
CP CGS V+K R E + L C ECG V+ + + K R I+VS+H +S
Sbjct: 3 CPICGSGSFRVLKSRTDESRSRKIKHLVLECEECGTVFRDSIVIEKPRTHRIVVSEHGKS 62
Query: 57 FREFVELPEGEVVKVGDIVETDEDEVRILSIELPGGKRVRKAKVEEIQTLWGESLTYPKV 116
+R+ VEL GE + GD + V + SIEL GKRV +A ++I+T+W SL P
Sbjct: 63 YRDEVELYPGEELSAGDALTVSGKLVEVTSIELKSGKRVDRATEDDIETVWAVSLEAPAR 122
Query: 117 FGVSIYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADKI 176
GVS+ L G + S KV +DRD F VG+V+++G + F+++ +KT +++R G A A I
Sbjct: 123 VGVSVDLHGEV-YSRKVEIDRDFIFRVGDVLKIGEHVFRIKSMKTGDRMIRRGSAPAHNI 181
Query: 177 VRLMGHAIKGR 187
R+ G + R
Sbjct: 182 KRIYGVPVNMR 192
>sp|Q58390|Y981_METJA HYPOTHETICAL PROTEIN MJ0981 >gi|2128617|pir||E64422 hypothetical
protein MJ0981 - Methanococcus jannaschii
>gi|1591643|gb|AAB98984.1| (U67541) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 204
Score = 104 bits (256), Expect = 1e-21
Identities = 67/183 (36%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 4 YYVCPQCGSEDVEVIKER----GREVTLRCNECGYVW-IVTLPKLRKIPIIVSKHERSFR 58
Y C CG E+ EV+K++ +RC CG V IV KL + +I+S+++ S
Sbjct: 8 YLKCENCGFEEQEVLKKKIYNKSAYYLVRCPNCGSVREIVDKVKLSQAKLIISRYDISES 67
Query: 59 EFVELPEGEVVKVGDIVETDEDEVRILSIELPGGKRVRKAKVEEIQTLWGESLTYPKVFG 118
+ + +PE E KVGD +E D +++ I IE P + V+ A E+I+ +WG+SL+ PK G
Sbjct: 68 KVINIPEDETYKVGDTIEIDGEKIEITKIETP--ESVKSALGEDIKVIWGKSLSIPKKLG 125
Query: 119 VSIYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADKIVR 178
+SI T + V D EF V +V + F+++ IKTEK + KAKA I R
Sbjct: 126 ISIN-DRSKTYGIYIYVPNDFEFEVEKVYRINDGFFRLKKIKTEKGTAK--KAKAKDIKR 182
Query: 179 LMG 181
L G
Sbjct: 183 LYG 185
>gi|11499548 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483189|pir||E69495 conserved hypothetical protein
AF1966 - Archaeoglobus fulgidus
>gi|2648579|gb|AAB89294.1| (AE000967) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 191
Score = 83.5 bits (203), Expect = 2e-15
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 25/204 (12%)
Query: 3 EYYVCPQCGSEDV-EVIKERGREVTLRCNECGYVWIVTLPKLRKIPI--IVSKHERSFRE 59
EY C CG E + E+I+E RC ECG + LP+ R++ + I+S S +
Sbjct: 4 EYIYCDTCGEETLHELIREEKN--LYRCTECG-TFTTHLPR-REVGVRAIISSGPESVKG 59
Query: 60 FVELPEGEVVKVGD--IVETDEDEV--RILSIELPGGKRVRKAKVEEIQTLWGESLTYPK 115
+ EGE ++ GD IVET+ I S+EL GKR A V EI+T+W + +
Sbjct: 60 SIRAYEGEKLEKGDEYIVETERGHKIGEITSLELKNGKRAESAAVGEIETVWLRDVGEVE 119
Query: 116 VFGVSIYLPGGITQSFKVVVDRDEEFVVGEVIEVGGYTFKVEMIKTEKKLMRSGKAKADK 175
V +S++ +T +K+VVD + EF VGEV+ V G F++ I KL+ G
Sbjct: 120 V-RMSLH-KRSVTTPYKMVVDGETEFEVGEVLHVDGKRFRIHRI----KLISGGV----- 168
Query: 176 IVRLMGHAIKGRARRKLKIYEGYD 199
L G + RAR +IY Y+
Sbjct: 169 ---LRGEGKRARAREIRRIYAKYE 189
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75417714
Number of Sequences: 2977
Number of extensions: 2996719
Number of successful extensions: 9662
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9652
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 189,106,746
effective HSP length: 54
effective length of query: 150
effective length of database: 156,788,448
effective search space: 23518267200
effective search space used: 23518267200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)