BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0162 (PAB0162) DE:Hypothetical protein
         (175 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75214 hypothetical protein PAB0162 - Pyrococcus abyssi (st...   353  6e-97
pir||G71450 hypothetical protein PH0262 - Pyrococcus horikoshii ...   231  4e-60
pir||B71040 hypothetical protein PH1610 - Pyrococcus horikoshii ...    76  3e-13
pir||G72486 hypothetical protein APE2535 - Aeropyrum pernix (str...    71  9e-12

>pir||D75214 hypothetical protein PAB0162 - Pyrococcus abyssi (strain Orsay)
           >gi|5457672|emb|CAB49163.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 175
           
 Score =  353 bits (897), Expect = 6e-97
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MRIFGILGPIIALAGVVFAYLLNRDWWSITENAISDLGRVGLPNNWVMNCGLIIGGLLLL 60
           MRIFGILGPIIALAGVVFAYLLNRDWWSITENAISDLGRVGLPNNWVMNCGLIIGGLLLL
Sbjct: 1   MRIFGILGPIIALAGVVFAYLLNRDWWSITENAISDLGRVGLPNNWVMNCGLIIGGLLLL 60

Query: 61  GYGAWRLKKSKNPGWAIYVVGSVFLVLIGVFPEGTEWHYEVSWGFFVSMFAAMLIISISI 120
           GYGAWRLKKSKNPGWAIYVVGSVFLVLIGVFPEGTEWHYEVSWGFFVSMFAAMLIISISI
Sbjct: 61  GYGAWRLKKSKNPGWAIYVVGSVFLVLIGVFPEGTEWHYEVSWGFFVSMFAAMLIISISI 120

Query: 121 LKKSRLGFLGLAVFCVSLPLALFSLKAFSGVAVAETVSILAFLIFQTLTLVVEDV 175
           LKKSRLGFLGLAVFCVSLPLALFSLKAFSGVAVAETVSILAFLIFQTLTLVVEDV
Sbjct: 121 LKKSRLGFLGLAVFCVSLPLALFSLKAFSGVAVAETVSILAFLIFQTLTLVVEDV 175


>pir||G71450 hypothetical protein PH0262 - Pyrococcus horikoshii
           >gi|3256651|dbj|BAA29334.1| (AP000001) 192aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 192
           
 Score =  231 bits (583), Expect = 4e-60
 Identities = 107/171 (62%), Positives = 141/171 (81%), Gaps = 1/171 (0%)

Query: 1   MRIFGILGPIIALAGVVFAYLLNRDWWSITENAISDLGRVGLPNNWVMNCGLIIGGLLLL 60
           M+I GI+GP I++ G++ +YL++RDWW ITENAISDLGR+GLP NWVMN  LI+G + L+
Sbjct: 19  MKILGIIGPGISVGGILISYLIHRDWWGITENAISDLGRIGLPYNWVMNISLILGSVCLI 78

Query: 61  GYGAWRLKKSKNPGWAIYVVGSVFLVLIGVFPEGTEWHYEVSWGFFVSMFAAMLIISIS- 119
            YGAWR KKSK+ GW +Y++GSVFL LIG+FPEGT  HYEVSWGFFVSMF A+L++SIS 
Sbjct: 79  IYGAWRFKKSKDIGWLLYMLGSVFLGLIGIFPEGTNLHYEVSWGFFVSMFLAILLLSISF 138

Query: 120 ILKKSRLGFLGLAVFCVSLPLALFSLKAFSGVAVAETVSILAFLIFQTLTL 170
           +++ ++LG +GL +F + +PLAL+SLK F GVAVAET+SI+ FLI+  L L
Sbjct: 139 LIRGNKLGIVGLMLFLLGVPLALWSLKKFEGVAVAETISIVVFLIWHYLML 189


>pir||B71040 hypothetical protein PH1610 - Pyrococcus horikoshii
           >gi|3258039|dbj|BAA30722.1| (AP000006) 183aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 183
           
 Score = 76.1 bits (184), Expect = 3e-13
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 8   GPIIALAGVVFAY--LLNRDWWSITENAISDLGRVGLPNN-WVMNCGLIIGGLLLLGYGA 64
           G +  LA   F Y  + N  W+S  +NA+SDLG     ++ W+ N GLI+    +L +  
Sbjct: 16  GTVGGLAYWFFVYWSISNNPWFSFFKNALSDLGDPAKASHPWIYNYGLIVTSPFVLAFSI 75

Query: 65  WRLKKSKNP----GWAIYVVGSVFLVLIGVFPEGTEWHYEVSWGFFVSMFAAMLIISISI 120
           + +  +KN     G A   + S+FL LIG+F  GT  H  VS  FF+  F  MLI  +  
Sbjct: 76  YLIIAAKNKIQTVGGAYISISSLFLALIGIFHAGTRPHVFVSTYFFIQFFLGMLIYGVG- 134

Query: 121 LKKSRLGFLGLAVFCVSLPLALFSLKAFSGVAVAETVSILAFLIF 165
             K+ +    + +F ++L L LF    +  VA+ ET  I+  ++F
Sbjct: 135 -SKTAIRLTSIIIFILAL-LGLFI--PWPSVALEETYEIVLIMLF 175


>pir||G72486 hypothetical protein APE2535 - Aeropyrum pernix (strain K1)
           >gi|5106240|dbj|BAA81551.1| (AP000064) 165aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 165
           
 Score = 71.0 bits (171), Expect = 9e-12
 Identities = 49/158 (31%), Positives = 79/158 (49%), Gaps = 9/158 (5%)

Query: 22  LNRDWWSITENAISDLGRVGLPNNWVMNCGLIIGGLLLLGYGAW----RLKKSKNPGWAI 77
           +N DW+  TE+A SDLG V     W+ N GLI+ GLL+  Y        +++ +  G  +
Sbjct: 1   MNSDWFVFTEHAFSDLGGVKARMPWIYNYGLILVGLLVTLYSLCPYRAAVERLEAFGSGL 60

Query: 78  YVVGSVFLVLIGVFPEGTEWHYEVSWGFFVSMFAAMLIISISILKKSR----LGFLGLAV 133
            +   +FL LIGV+P GT  H  VS  FF+ M  A++ +S+   +  R    +  L L++
Sbjct: 61  LLTAGLFLALIGVYPAGTRPHVFVSTWFFLQMDMALVALSLGAYRACRNLANMAALALSL 120

Query: 134 FCVSLPLALFSLKAFSGVAVAETVSILAF-LIFQTLTL 170
               + + +     +   AVAE   I+   ++   LTL
Sbjct: 121 AAFPVYILIGITLGWPSAAVAEAYGIVVIDIVVIILTL 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.146    0.463 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62924387
Number of Sequences: 2977
Number of extensions: 2673812
Number of successful extensions: 8209
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8203
Number of HSP's gapped (non-prelim): 4
length of query: 175
length of database: 189,106,746
effective HSP length: 47
effective length of query: 128
effective length of database: 160,977,857
effective search space: 20605165696
effective search space used: 20605165696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 162 (67.5 bits)