BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0163 (noxC) DE:NADH OXIDASE (NOXC)
(233 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75214 NADH oxidase (noxc) PAB0163 - Pyrococcus abyssi (str... 470 e-132
pir||D75137 hypothetical protein PAB1763 - Pyrococcus abyssi (st... 251 6e-66
pir||G64472 hypothetical protein MJ1384 - Methanococcus jannasch... 198 5e-50
pir||E72745 hypothetical protein APE0492 - Aeropyrum pernix (str... 164 9e-40
pir||E69021 conserved hypothetical protein MTH116 - Methanobacte... 132 3e-30
gb|AAC25178.1| (AF067649) SagB [Streptococcus pyogenes] 96 4e-19
gb|AAF26925.1|AF210843_22 (AF210843) nonribosomal peptide synthe... 87 2e-16
gb|AAF62881.1|AF217189_4 (AF217189) EpoB [Sorangium cellulosum] 83 4e-15
gb|AAF19812.1|AF188287_4 (AF188287) MtaD [Stigmatella aurantiaca] 76 5e-13
emb|CAC11516.1| (AL445064) conserved hypothetical protein [Therm... 71 1e-11
gi|11497842 NADH oxidase (noxC) [Archaeoglobus fulgidus] >gi|391... 70 2e-11
gb|AAG02365.1|AF210249_24 (AF210249) peptide synthetase NRPS0 [S... 69 6e-11
>pir||E75214 NADH oxidase (noxc) PAB0163 - Pyrococcus abyssi (strain Orsay)
>gi|5457673|emb|CAB49164.1| (AJ248283) NADH OXIDASE
(NOXC) [Pyrococcus abyssi]
Length = 233
Score = 470 bits (1197), Expect = e-132
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MFKKLAWFTILIVILGSVAILVKPYLGTSEWEAKSGGEVIKLPEPRLRGEMSVEEAIARR 60
MFKKLAWFTILIVILGSVAILVKPYLGTSEWEAKSGGEVIKLPEPRLRGEMSVEEAIARR
Sbjct: 1 MFKKLAWFTILIVILGSVAILVKPYLGTSEWEAKSGGEVIKLPEPRLRGEMSVEEAIARR 60
Query: 61 RSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAPSAGATYPFEVYVVVGKVMGLKPG 120
RSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAPSAGATYPFEVYVVVGKVMGLKPG
Sbjct: 61 RSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAPSAGATYPFEVYVVVGKVMGLKPG 120
Query: 121 VYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTTSVYGERGIRY 180
VYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTTSVYGERGIRY
Sbjct: 121 VYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTTSVYGERGIRY 180
Query: 181 VHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGHPLYIFPVGRV 233
VHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGHPLYIFPVGRV
Sbjct: 181 VHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGHPLYIFPVGRV 233
>pir||D75137 hypothetical protein PAB1763 - Pyrococcus abyssi (strain Orsay)
>gi|5458324|emb|CAB49813.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 196
Score = 251 bits (634), Expect = 6e-66
Identities = 121/193 (62%), Positives = 151/193 (77%), Gaps = 2/193 (1%)
Query: 40 IKLPEPRLRGEMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAPSA 99
IKLP P+ +G +S+EEAI +RRSIR Y EP+++EELSQ+LWAA G+ + R PSA
Sbjct: 3 IKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGK--RNYPSA 60
Query: 100 GATYPFEVYVVVGKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAIN 159
GA YP EVY VVG V G+KPG+Y YN EHSL+LVREG+ ++L A L Q+ V NA ++
Sbjct: 61 GARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVS 120
Query: 160 IVLVAYYERTTSVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILG 219
IV+VA+YERTTS YGERGIRYVH++ GH+GQNIYLQAT+L LGTVAVGAF DD V +LG
Sbjct: 121 IVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLG 180
Query: 220 TDGHPLYIFPVGR 232
DG PLY+FP+G+
Sbjct: 181 VDGDPLYVFPIGK 193
>pir||G64472 hypothetical protein MJ1384 - Methanococcus jannaschii
>gi|1592030|gb|AAB99394.1| (U67578) NADH oxidase
[Methanococcus jannaschii]
Length = 198
Score = 198 bits (498), Expect = 5e-50
Identities = 97/196 (49%), Positives = 137/196 (69%), Gaps = 2/196 (1%)
Query: 37 GEVIKLPEPRLRGEMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAA 96
G+ +++ P + E+ +E+ + +RRS+R Y PLT+ ELS +L+AA G+TDER F+
Sbjct: 2 GDTMEIQLPDIE-EIKLEDVLIKRRSVREYCSSPLTLRELSHILFAAYGVTDERG-FKTV 59
Query: 97 PSAGATYPFEVYVVVGKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNA 156
PSAGATYP E+YV V V+G++ GVY Y P HS++ + + +L AAL Q ++ A
Sbjct: 60 PSAGATYPLEIYVNVRDVVGVEEGVYKYIPERHSIVRILDEEVGHELALAALKQMFIAIA 119
Query: 157 AINIVLVAYYERTTSVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVAD 216
I +++ A YERTT VYG+RG RYVHME GH+ QN+YL ATSLGLGTV+VGAF+D+ + +
Sbjct: 120 PIVLIIAANYERTTRVYGDRGFRYVHMEVGHVAQNVYLMATSLGLGTVSVGAFYDNEIRE 179
Query: 217 ILGTDGHPLYIFPVGR 232
IL +PL + PVGR
Sbjct: 180 ILKIKEYPLLLMPVGR 195
>pir||E72745 hypothetical protein APE0492 - Aeropyrum pernix (strain K1)
>gi|5104141|dbj|BAA79457.1| (AP000059) 280aa long
hypothetical protein [Aeropyrum pernix]
Length = 280
Score = 164 bits (411), Expect = 9e-40
Identities = 94/214 (43%), Positives = 121/214 (55%), Gaps = 6/214 (2%)
Query: 24 PYLGTSEWEAKSGGEVIKLPEPRLRGEMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAA 83
PY ++ + LPEP + V EAI RRRS R++ PLT+ E+S +L+
Sbjct: 64 PYASDGYYKTYKHTRCVGLPEPTKVSGVDVLEAIRRRRSRRSFSRRPLTLTEVSTILFHV 123
Query: 84 QGITDER---RKFRAAPSAGATYPFEVYVVVGKVMGLKPGVYLYNPFEHSLILVREGNFM 140
GIT R PSAGA P E Y+VV +V GLKPG+Y YNP H L ++REG +
Sbjct: 124 AGITGLAWWGGPKRPYPSAGALQPVEAYLVVERVEGLKPGLYHYNPSGHCLEMLREGKLL 183
Query: 141 QDLEEAALNQKWVGNAAINIVLVAYYERTTSVYGERGIRYVHMEAGHIGQNIYLQATSLG 200
L + +L Q V AA +VL A Y RT S YG R RYVH + G G+N+YL +LG
Sbjct: 184 GRLADVSLGQDHVAEAAAALVLTAVYTRTGSKYGHRSYRYVHWDTGFAGENVYLVCEALG 243
Query: 201 LGTVAVGAFHDDVVADILGTD---GHPLYIFPVG 231
L TVAVGAF+DD + L D P+ +FPVG
Sbjct: 244 LATVAVGAFYDDEMCGFLEIDCPWEMPMLVFPVG 277
>pir||E69021 conserved hypothetical protein MTH116 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621155|gb|AAB84622.1| (AE000801) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 247
Score = 132 bits (330), Expect = 3e-30
Identities = 74/190 (38%), Positives = 108/190 (55%), Gaps = 6/190 (3%)
Query: 50 EMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGIT--DERRKFRAAPSAGATYPFEV 107
+ ++ I RRS R+Y D PL ++ELS LLWA QGI FR PSAG + FE
Sbjct: 58 DANIVTCIRNRRSRRSYLDTPLGLDELSFLLWATQGIRIIAGDTAFRNVPSAGCRHTFET 117
Query: 108 YVVVGKVMGLKPGVYLYNPFEHSLIL-VREGNFMQDLEEAALNQKWVGNAAINIVLVAYY 166
Y+ V V GL G+Y Y P H L++ R+ + Q + EA NQ++ GN+A+ +
Sbjct: 118 YLAVFNVEGLDTGLYRYIPSTHQLMVEYRDESLPQRIIEATFNQRFTGNSAVTFIWTTVP 177
Query: 167 ERTTSVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDG---H 223
R YG R + M+AGH+ QN+YL ++G GT AVGA+ + + ++LG DG
Sbjct: 178 YRMEWRYGLAAHRVILMDAGHVCQNLYLACEAIGAGTCAVGAYDQEYLDEVLGVDGVDEF 237
Query: 224 PLYIFPVGRV 233
+Y+ PVG++
Sbjct: 238 AIYLAPVGKI 247
>gb|AAC25178.1| (AF067649) SagB [Streptococcus pyogenes]
Length = 316
Score = 96.0 bits (235), Expect = 4e-19
Identities = 62/219 (28%), Positives = 110/219 (49%), Gaps = 19/219 (8%)
Query: 28 TSEWEAKSGGEVIKLPEPRLRGEMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGIT 87
+S + +S ++I+LP+P + ++ I +RRS R + D + +++LS +L+ A G++
Sbjct: 97 SSSYVYESQEKIIRLPKPT-KISTALSTCIIKRRSHRQFSDRQMPLQDLSNILYYACGVS 155
Query: 88 DE---------RRKFRAAPSAGATYPFEVYVVVGKVMGLKPGVYLYNPFEHSLILVR--- 135
+ + R S G YP + + L G Y Y P++H+L R
Sbjct: 156 SQASIRDGASDKITLRNCASGGGLYPIHLVFYARNISKLIDGFYEYLPYQHALRCYRHSS 215
Query: 136 EGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTTSVYGERGIRYVHMEAGHIGQNIYLQ 195
E N E A+N + N I I+ V +Y + T YG + Y +E+G I QNI L
Sbjct: 216 EENVRDFAEYGAINAE---NCNIIIIYVYHYMKNTRKYGNQATAYAFIESGEIAQNIQLT 272
Query: 196 ATSLGLGTVAVGAFHDDVVADILGTDG---HPLYIFPVG 231
AT+L G++ +G ++ + + ++L DG H +++ VG
Sbjct: 273 ATALTYGSIDIGGYNKEYLQELLDLDGLGEHVIHMTLVG 311
>gb|AAF26925.1|AF210843_22 (AF210843) nonribosomal peptide synthetase [Sorangium cellulosum]
Length = 1410
Score = 86.6 bits (211), Expect = 2e-16
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 7/178 (3%)
Query: 55 EAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERR---KFRAAPSAGATYPFEVYVVV 111
+ ARRRS+RT+ + P+ E + L + + KFR PSAG+TYP + Y V
Sbjct: 1041 DVYARRRSVRTFLEAPIPFVEFGRFLSCLSSVEPDGATLPKFRY-PSAGSTYPVQTYAYV 1099
Query: 112 --GKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERT 169
G++ G+ G Y Y+PFEH L+ + + + N AA N++ V +
Sbjct: 1100 KSGRIEGVDEGFYYYHPFEHRLLKLSDHGIERGAH-VRQNFDVFDEAAFNLLFVGRIDAI 1158
Query: 170 TSVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGHPLYI 227
S+YG + +EAG++ Q + QA S +G VG F+ + V +L +Y+
Sbjct: 1159 ESLYGSSSREFCLLEAGYMAQLLMEQAPSCNIGVCPVGQFNFEQVRPVLDLRHSDVYV 1216
>gb|AAF62881.1|AF217189_4 (AF217189) EpoB [Sorangium cellulosum]
Length = 1410
Score = 82.7 bits (201), Expect = 4e-15
Identities = 53/178 (29%), Positives = 84/178 (46%), Gaps = 7/178 (3%)
Query: 55 EAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERR---KFRAAPSAGATYPFEVYVVV 111
+ ARRRS+RT+ + P+ E + L + + KFR PSAG+TYP + Y
Sbjct: 1041 DVYARRRSVRTFLEAPIPFVEFGRFLSCLSSVEPDGAALPKFRY-PSAGSTYPVQTYAYA 1099
Query: 112 --GKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERT 169
G++ G+ G Y Y+PFEH L+ V + + N AA ++ V +
Sbjct: 1100 KSGRIEGVDEGFYYYHPFEHRLLKVSDHGIERGAH-VPQNFDVFDEAAFGLLFVGRIDAI 1158
Query: 170 TSVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGHPLYI 227
S+YG + +EAG++ Q + QA S +G VG F + V +L +Y+
Sbjct: 1159 ESLYGSLSREFCLLEAGYMAQLLMEQAPSCNIGVCPVGQFDFEQVRPVLDLRHSDVYV 1216
>gb|AAF19812.1|AF188287_4 (AF188287) MtaD [Stigmatella aurantiaca]
Length = 3291
Score = 75.7 bits (183), Expect = 5e-13
Identities = 52/169 (30%), Positives = 83/169 (48%), Gaps = 6/169 (3%)
Query: 60 RRSIRTYKDEPLTIEELSQLLWAAQGITDERR---KFRAAPSAGATYPFEVYVVV--GKV 114
R+S +++ EP+++E LS+LL I E K+R A SAG YP +VY+ V G+V
Sbjct: 1065 RQSAQSFLSEPVSLERLSELLSCLMQIALEDSMMPKYRYA-SAGGLYPVQVYLHVKPGRV 1123
Query: 115 MGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTTSVYG 174
GL G Y Y+P H L+L+ M + A+ N+ AA ++ LV +YG
Sbjct: 1124 GGLAGGTYYYHPKRHELVLLTADAAMDRSQHASRNRPVFDAAAFSVFLVGKLSAIAPLYG 1183
Query: 175 ERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGH 223
+ +EAG++ Q + A + +G +G + + L D H
Sbjct: 1184 SMARDFCMLEAGYMAQLLMSVAPAHKMGLCPIGVMDFEPLRSQLALDEH 1232
>emb|CAC11516.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 319
Score = 71.0 bits (171), Expect = 1e-11
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 40 IKLPEPRLRG--EMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAP 97
IK+P P+ G E++++ + RR+ R +++E + +E+ S +LW A R
Sbjct: 93 IKMPIPKNVGLEEVNLKNVLLGRRTTRIFQNESMKLEDFSSILWNALSRVRHVRNLSYED 152
Query: 98 S----AGATYPFEVYVVVGKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWV 153
A F+ YV+ + L+ G+YLY+ +H L ++ G+F +++ +
Sbjct: 153 PLDYFASHGTEFDFYVIAYNINHLQNGIYLYDVKDHFLSELKSGDFREEMIHNLWWHQAP 212
Query: 154 GNAAINIVLVAYYERTTSVY-GERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHD- 211
A I+ V +E+ Y ER +R + +EAG I Q + +A +G G++ A D
Sbjct: 213 KTANFTILFVTDFEQYQWRYRHERALRNIFIEAGRIAQRLIFEAERMGFGSLPTPATRDS 272
Query: 212 --DVVADILGTDGHPLYIFPVGR 232
D + + LY VG+
Sbjct: 273 SFDKMLSLKRNKQFVLYTITVGK 295
>gi|11497842 NADH oxidase (noxC) [Archaeoglobus fulgidus]
>gi|3915352|sp|O30013|Y226_ARCFU PUTATIVE NADH
DEHYDROGENASE/NAD(P)H NITROREDUCTASE AF0226
>gi|7430214|pir||B69278 NADH oxidase (noxC) homolog -
Archaeoglobus fulgidus >gi|2650415|gb|AAB91006.1|
(AE001090) NADH oxidase (noxC) [Archaeoglobus fulgidus]
Length = 172
Score = 70.2 bits (169), Expect = 2e-11
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 36/183 (19%)
Query: 51 MSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAPSAGATYPFEVYVV 110
M + + RR SIR + + + E L ++L A AAPSAG
Sbjct: 1 MECLDLLFRRVSIRKFTQDDVDDEILMKILEAGN----------AAPSAG---------- 40
Query: 111 VGKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTT 170
N +++R + L AAL Q ++ A + IV+ A Y R+
Sbjct: 41 --------------NLQARDFVVIRNPETKKRLAMAALKQMFIAEAPVVIVVCANYPRSM 86
Query: 171 SVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILGTDGH--PLYIF 228
VYGERG Y +A +NI L T+L LG V VGAF ++ V++IL + P+ I
Sbjct: 87 RVYGERGRLYAEQDATAAIENILLAVTALNLGAVWVGAFDEEQVSEILELPEYVRPMAII 146
Query: 229 PVG 231
P+G
Sbjct: 147 PIG 149
>gb|AAG02365.1|AF210249_24 (AF210249) peptide synthetase NRPS0 [Streptomyces verticillus]
Length = 935
Score = 68.7 bits (165), Expect = 6e-11
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 57 IARRRSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAA-PSAGATYPFEVYVVV--GK 113
+ RRS + P+T+ +L+ LL A + + + + A PSAG++YP + Y++V GK
Sbjct: 749 LTARRSHHRFDPGPVTLPDLAALLGALRRVRGPGGEPKYAYPSAGSSYPVQTYLLVHPGK 808
Query: 114 VMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAINIVLVAYYERTTSVY 173
V GL G + +P + L+ + + A +N+ G AA ++ L+A + T +Y
Sbjct: 809 VTGLPGGSHYVHPARNRLVSIDPTATLPADAHAEINRAAYGEAAFSLYLIAAIDAITPLY 868
Query: 174 GERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVG 207
G+ + EAG + Q + A G+G VG
Sbjct: 869 GDLSWDFTVFEAGAMTQLLMRTAVGTGIGLCPVG 902
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87541893
Number of Sequences: 2977
Number of extensions: 3525610
Number of successful extensions: 7900
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7875
Number of HSP's gapped (non-prelim): 14
length of query: 233
length of database: 189,106,746
effective HSP length: 53
effective length of query: 180
effective length of database: 157,386,935
effective search space: 28329648300
effective search space used: 28329648300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)