BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0164 (radA) DE:DNA repair protein RAD51 (radA)
(356 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75214 DNA repair protein rad51 (rada) PAB0164 - Pyrococcus... 698 0.0
gb|AAC34998.1| (AF052597) recombinase [Pyrococcus furiosus] 633 e-180
gi|11498598 DNA repair protein RAD51 (radA) [Archaeoglobus fulgi... 442 e-123
emb|CAC12231.1| (AL445066) probable DNA repair protein Rad51 (Ra... 413 e-114
pir||H71450 probable DNA repair protein - Pyrococcus horikoshii ... 413 e-114
sp|O27436|RADA_METTH RADA PROTEIN >gi|7448303|pir||A69051 DNA re... 379 e-104
pir||D72766 probable radA protein APE0119 - Aeropyrum pernix (st... 358 4e-98
gb|AAG20547.1| (AE005125) DNA repair protein; RadA1 [Halobacteri... 353 2e-96
sp|Q55075|RADA_SULSO DNA REPAIR PROTEIN RADA >gi|2129447|pir||S7... 353 2e-96
dbj|BAA88984.1| (AB026115) RadA [Pyrobaculum islandicum] 353 2e-96
gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfat... 352 3e-96
sp|Q48328|RADA_HALVO DNA REPAIR PROTEIN RADA >gi|2129410|pir||S7... 351 7e-96
pir||T43802 recombination/repair protein radA [imported] - Halob... 342 3e-93
gb|AAD33955.1|AF145465_1 (AF145465) recombination/repair protein... 342 4e-93
pir||S71095 radA protein - Methanococcus jannaschii 339 3e-92
sp|Q49593|RADA_METJA DNA REPAIR PROTEIN RADA >gi|2127856|pir||E6... 339 3e-92
gb|AAC23499.1| (AF008421) RadA [Methanococcus voltae] 323 1e-87
gb|AAD16063.1| (AF090197) recombination/repair protein RadA [Cen... 309 4e-83
gb|AAF42940.1|AF234170_1 (AF234170) DMC1 protein [Hordeum vulgare] 284 1e-75
dbj|BAB16892.1| (AB041944) DMC1 [Cynops pyrrhogaster] 283 2e-75
gb|AAC16335.1| (AF062380) Dmc1 homolog [Leishmania major] 282 4e-75
sp|P37384|DMC1_LILLO MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG ... 280 1e-74
sp|Q14565|DMC1_HUMAN MEIOTIC RECOMBINATION PROTEIN DMC1/LIM15 HO... 279 3e-74
sp|Q96449|DMC1_SOYBN MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG ... 279 3e-74
emb|CAB45656.1| (AL022320) dJ199H16.1 (DMC1 ((dosage suppressor ... 279 3e-74
gi|5901996 DMC1 (dosage suppressor of mck1, yeast homolog) meios... 279 3e-74
sp|Q91918|R511_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 1 (XRAD51.... 279 3e-74
pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans 278 8e-74
pir||T37305 rad51 protein, short isoform - Caenorhabditis elegan... 278 8e-74
gb|AAC49617.1| (U76670) AtDMC1 [Arabidopsis thaliana] 277 1e-73
dbj|BAA78377.1| (AB020740) Rad51 [Cynops pyrrhogaster] 277 1e-73
sp|Q91917|R512_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 2 (XRAD51.... 277 1e-73
gi|6753650 disrupted meiotic cDNA 1 homolog [Mus musculus] >gi|2... 277 2e-73
gi|6321027 meiosis-specific protein related to RecA and Rad51p. ... 276 3e-73
sp|Q06609|RA51_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|2136... 276 3e-73
gi|11431556 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) ... 276 3e-73
gi|4506389 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) [... 275 4e-73
sp|P70099|RA51_CRIGR DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|1552... 274 1e-72
gb|AAC39117.1| (AF064516) Rad51 [Tetrahymena thermophila] 274 1e-72
sp|P37383|RA51_CHICK DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|479915... 273 2e-72
gi|6755276 Rad51 homolog (S. cerevisiae) [Mus musculus] >gi|5857... 273 2e-72
gb|AAB53331.1| (U94994) Dmc1 homolog [Bombyx mori] 272 5e-72
sp|O77507|RA51_RABIT DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|3387... 271 8e-72
gb|AAD51713.1|AF174136_1 (AF174136) RAD51 [Trypanosoma brucei] 270 1e-71
gb|AAC16334.1| (AF062379) Rad51 homolog [Leishmania major] 269 3e-71
sp|Q99133|RA51_USTMA DNA REPAIR PROTEIN RAD51 >gi|1480734|gb|AAC... 269 4e-71
gi|6320942 RecA homolog; Rad51p colocalizes to ~ 65 spots with D... 268 5e-71
sp|Q39009|DMC1_ARATH MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG ... 268 5e-71
sp|P50265|DLH1_CANAL MEIOTIC RECOMBINATION PROTEIN DLH1 (DMC1 HO... 267 2e-70
gb|AAB53330.1| (U94993) Rad51 homolog [Bombyx mori] 266 3e-70
emb|CAA73605.1| (Y13144) Rad51 homologue [Trypanosoma brucei] 265 6e-70
sp|P36601|RA51_SCHPO DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|629906... 263 2e-69
emb|CAA80878.1| (Z24756) RecA-like protein [Schizosaccharomyces ... 263 2e-69
pir||S37672 RAD51 protein - fission yeast (Schizosaccharomyces p... 263 2e-69
dbj|BAA89533.1| (AB036801) LIM15/DMC1 homolog [Coprinus cinereus] 263 2e-69
pir||S36159 RAD51 protein homolog - fission yeast (Schizosacchar... 262 4e-69
pir||T39157 meiotic recombination protein - fission yeast (Schi... 260 2e-68
pir||S70629 Rad51 homolog mei-3 - Neurospora crassa >gi|2182133|... 259 3e-68
sp|Q27297|RA51_DROME DNA REPAIR PROTEIN RAD51 HOMOLOG (RECA PROT... 257 1e-67
emb|CAB02454.1| (Z80341) uvsC [Aspergillus nidulellus] 257 1e-67
gb|AAB39323.2| (U63728) ARECA [Aspergillus nidulans] 257 1e-67
sp|O42634|DMC1_SCHPO MEIOTIC RECOMBINATION PROTEIN DMC1 >gi|1127... 257 2e-67
gb|AAC23703.1| (U21905) Rah1 [Coprinus cinereus] 256 3e-67
dbj|BAA92869.1| (AB040404) Pprad51 [Penicillium paxilli] 254 9e-67
gb|AAD32030.1|AF079429_1 (AF079429) RAD51 homolog RAD51B [Zea mays] 253 2e-66
gb|AAB37762.1| (U43528) RAD51 homolog AtRad51 [Arabidopsis thali... 252 4e-66
gb|AAD32029.1|AF079428_1 (AF079428) RAD51 homolog RAD51A [Zea mays] 250 2e-65
sp|Q40134|RA51_LYCES DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|744830... 249 4e-65
gb|AAF74403.1|AF198107_3 (AF198107) DNA repair protein RAD51 [Gi... 233 2e-60
emb|CAC01068.1| (AL390935) probable DNA repair protein rad51 hom... 201 1e-50
gb|AAG34563.1| (AF321522) recombination/repair protein [Methanos... 185 5e-46
gb|AAD16064.1| (AF090198) recombination/repair protein RadA [Arc... 173 3e-42
gb|AAD16068.1| (AF090202) recombination/repair protein RadA [Met... 163 2e-39
gb|AAD16067.1| (AF090201) recombination/repair protein RadA [Met... 155 7e-37
gb|AAD16087.1| (AF090221) recombination/repair protein RadA [unc... 155 9e-37
gb|AAD16086.1| (AF090220) recombination/repair protein RadA [unc... 154 1e-36
gb|AAD16081.1| (AF090215) recombination/repair protein RadA [unc... 153 3e-36
gb|AAD16085.1| (AF090219) recombination/repair protein RadA [unc... 153 3e-36
gb|AAD16073.1| (AF090207) recombination/repair protein RadA [Sul... 152 8e-36
gb|AAD16084.1| (AF090218) recombination/repair protein RadA [unc... 152 8e-36
gb|AAD16077.1| (AF090211) recombination/repair protein RadA [unc... 151 1e-35
gb|AAD16074.1| (AF090208) recombination/repair protein RadA [Sul... 150 2e-35
gb|AAD16088.1| (AF090222) recombination/repair protein RadA [unc... 150 2e-35
emb|CAC14294.1| (AJ296174) Rad51C protein [Arabidopsis thaliana] 150 3e-35
emb|CAC14091.1| (AJ299424) RAD51C protein [Arabidopsis thaliana] 148 9e-35
gb|AAD16071.1| (AF090205) recombination/repair protein RadA [Pic... 146 3e-34
gb|AAD16072.1| (AF090206) recombination/repair protein RadA [Pic... 146 3e-34
gb|AAD16075.1| (AF090209) recombination/repair protein RadA [unc... 145 1e-33
gb|AAD16078.1| (AF090212) recombination/repair protein RadA [unc... 145 1e-33
gb|AAD16082.1| (AF090216) recombination/repair protein RadA [unc... 145 1e-33
gb|AAD16079.1| (AF090213) recombination/repair protein RadA [unc... 142 5e-33
gb|AAD16083.1| (AF090217) recombination/repair protein RadA [unc... 141 9e-33
gb|AAD16076.1| (AF090210) recombination/repair protein RadA [unc... 139 3e-32
gb|AAD16065.1| (AF090199) recombination/repair protein RadA [Hal... 139 4e-32
gb|AAD16089.1| (AF090223) recombination/repair protein RadA [unc... 139 4e-32
gb|AAG32018.1|AF277261_1 (AF277261) disrupted meiotic cDNA 1 pro... 134 2e-30
gb|AAG31991.1|AF277234_1 (AF277234) disrupted meiotic cDNA 1 pro... 133 3e-30
gb|AAG32009.1|AF277252_1 (AF277252) disrupted meiotic cDNA 1 pro... 133 3e-30
gb|AAG32020.1|AF277263_1 (AF277263) disrupted meiotic cDNA 1 pro... 133 3e-30
gb|AAG31999.1|AF277242_1 (AF277242) disrupted meiotic cDNA 1 pro... 132 6e-30
gb|AAG32017.1|AF277260_1 (AF277260) disrupted meiotic cDNA 1 pro... 132 6e-30
gb|AAG32011.1|AF277254_1 (AF277254) disrupted meiotic cDNA 1 pro... 132 7e-30
gb|AAG31993.1|AF277236_1 (AF277236) disrupted meiotic cDNA 1 pro... 131 1e-29
gb|AAG32001.1|AF277244_1 (AF277244) disrupted meiotic cDNA 1 pro... 131 1e-29
gb|AAG31996.1|AF277239_1 (AF277239) disrupted meiotic cDNA 1 pro... 130 3e-29
gb|AAG32013.1|AF277256_1 (AF277256) disrupted meiotic cDNA 1 pro... 129 4e-29
gb|AAG31995.1|AF277238_1 (AF277238) disrupted meiotic cDNA 1 pro... 128 8e-29
gb|AAG32010.1|AF277253_1 (AF277253) disrupted meiotic cDNA 1 pro... 128 8e-29
gb|AAB82635.1| (AC002387) putative RAD51C-like DNA repair protei... 128 1e-28
gb|AAG32006.1|AF277249_1 (AF277249) disrupted meiotic cDNA 1 pro... 128 1e-28
gb|AAG31994.1|AF277237_1 (AF277237) disrupted meiotic cDNA 1 pro... 127 1e-28
gb|AAG31998.1|AF277241_1 (AF277241) disrupted meiotic cDNA 1 pro... 127 2e-28
gb|AAG32007.1|AF277250_1 (AF277250) disrupted meiotic cDNA 1 pro... 126 4e-28
pir||C75199 recombinase PAB2270 - Pyrococcus abyssi (strain Orsa... 125 1e-27
sp|O57859|R51L_PYRHO PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 124 1e-27
gb|AAD16066.1| (AF090200) recombination/repair protein RadA [Met... 124 1e-27
gb|AAG32005.1|AF277248_1 (AF277248) disrupted meiotic cDNA 1 pro... 123 4e-27
sp|O43502|R51C_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 3 >gi|2909... 119 5e-26
gb|AAD16070.1| (AF090204) recombination/repair protein RadA [Met... 118 9e-26
pir||T46872 DNA repair protein rec [validated] - Pyrococcus sp >... 114 1e-24
pir||T43936 probable DNA repair protein [imported] - Pyrococcus ... 111 2e-23
gb|AAG19917.1| (AE005075) DNA repair protein; RadA2 [Halobacteri... 108 1e-22
gi|6679613 RAD51 like 1 (S. cerevisiae) [Mus musculus] >gi|39145... 105 7e-22
gi|10835029 RAD51 (S. cerevisiae)-like 1 [Homo sapiens] >gi|1143... 105 9e-22
emb|CAA75680.1| (Y15571) possible altenative splicing. Variation... 105 9e-22
gi|11499679 DNA repair protein REC [Archaeoglobus fulgidus] >gi|... 104 2e-21
gi|4885659 X-ray repair complementing defective repair in Chines... 99 9e-20
gi|11433489 X-ray repair complementing defective repair in Chine... 98 2e-19
dbj|BAB08781.1| (AB011482) contains similarity to DNA repair pro... 92 9e-18
gb|AAD21490.1| (AC006587) putative RAD51B-like DNA repair protei... 89 6e-17
gi|6320207 RecA homolog (similar to DMC1, RAD51, and RAD55), int... 87 3e-16
pir||T43507 DNA repair protein rhp57 - fission yeast (Schizosac... 87 4e-16
gb|AAC42663.1| (AF069531) spindle B [Drosophila melanogaster] >g... 84 2e-15
sp|O75771|R51D_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 4 (R51H3) ... 82 1e-14
dbj|BAA25914.1| (AB013341) Trad [Homo sapiens] 82 1e-14
sp|O50248|R51L_METMP PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 80 4e-14
gi|6755278 RAD51 like 3 (S. cerevisiae) [Mus musculus] >gi|73880... 80 5e-14
emb|CAC12165.1| (AL445066) DNA repair protein RAD51 related prot... 80 5e-14
sp|Q57702|R51L_METJA PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 77 3e-13
sp|O27728|R51L_METTH PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 76 4e-13
sp|Q9PR61|RECA_UREPA RECA PROTEIN (RECOMBINASE A) >gi|11277981|p... 74 3e-12
gi|11425563 RAD51 (S. cerevisiae)-like 3 [Homo sapiens] 70 4e-11
>pir||F75214 DNA repair protein rad51 (rada) PAB0164 - Pyrococcus abyssi
(strain Orsay) >gi|5457674|emb|CAB49165.1| (AJ248283)
DNA repair protein RAD51 (radA) [Pyrococcus abyssi]
Length = 356
Score = 698 bits (1783), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MMIMGKKSSDPAVVEINDVDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLRE 60
MMIMGKKSSDPAVVEINDVDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLRE
Sbjct: 1 MMIMGKKSSDPAVVEINDVDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLRE 60
Query: 61 AGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRI 120
AGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRI
Sbjct: 61 AGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRI 120
Query: 121 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 180
STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT
Sbjct: 121 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 180
Query: 181 ENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVK 240
ENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVK
Sbjct: 181 ENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVK 240
Query: 241 LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFF 300
LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFF
Sbjct: 241 LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFF 300
Query: 301 GDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
GDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED
Sbjct: 301 GDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
>gb|AAC34998.1| (AF052597) recombinase [Pyrococcus furiosus]
Length = 349
Score = 633 bits (1614), Expect = e-180
Identities = 321/344 (93%), Positives = 331/344 (95%)
Query: 13 VVEINDVDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVA 72
V EI++ +EL E E T KKKKKEK IR+IEDLPGVGPATAEKLREAG+DTLEAIAVA
Sbjct: 6 VKEIDEFEELGFEPATEETPKKKKKEKIIRSIEDLPGVGPATAEKLREAGYDTLEAIAVA 65
Query: 73 SPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLG 132
SPIELKEVAGISEG ALKIIQAARKAANLGTFMRADEYLKKR +IGRISTGSKSLDKLLG
Sbjct: 66 SPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLLG 125
Query: 133 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI 192
GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI
Sbjct: 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI 185
Query: 193 AKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFR 252
A+NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD+PVKLLIVDSLTSHFR
Sbjct: 186 AQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245
Query: 253 SEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHIL 312
SEYIGRGALAERQQKLAKHLADLHRLANLY+IAVFVTNQVQARPDAFFGDPTRPIGGHIL
Sbjct: 246 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305
Query: 313 AHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
AHSATLRVYLRKGKGGKR+ARLIDAPHLPEGEAVF ITEKGIED
Sbjct: 306 AHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
>gi|11498598 DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus]
>gi|3914552|sp|O29269|RADA_ARCFU DNA REPAIR PROTEIN RADA
>gi|7448304|pir||A69374 DNA repair protein RAD51 (radA)
homolog - Archaeoglobus fulgidus
>gi|2649602|gb|AAB90248.1| (AE001035) DNA repair protein
RAD51 (radA) [Archaeoglobus fulgidus]
Length = 337
Score = 442 bits (1125), Expect = e-123
Identities = 213/325 (65%), Positives = 267/325 (81%)
Query: 32 SKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKI 91
S++ +E +I +ED+PGVGP TA KLREAG+ T+EA+AVASP EL V GI+EG A+KI
Sbjct: 2 SEESNEETKIIELEDIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKI 61
Query: 92 IQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 151
IQAARK AN+G F D+ L++R S+ +I+TGSK LD+LLGGG+ETQAITE FGEFGSGK
Sbjct: 62 IQAARKLANIGGFESGDKVLERRRSVKKITTGSKDLDELLGGGVETQAITEFFGEFGSGK 121
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H LAV VQLP +EGGL GSVI IDTENTFRPERI ++A+ +GLD +EVLK+IYVA+
Sbjct: 122 TQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQ 181
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A+NSNHQMLLV A++ ++L +PV+L+IVDSL SHFR+EY+GRG LA+RQQKL +H
Sbjct: 182 AYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRH 241
Query: 272 LADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV 331
L DL + LY A+ VTNQV ARPD FGDPT+P+GGHI+AH+AT R+YL+KGK R+
Sbjct: 242 LHDLMKFGELYNAAIVVTNQVMARPDVLFGDPTKPVGGHIVAHTATFRIYLKKGKDDLRI 301
Query: 332 ARLIDAPHLPEGEAVFRITEKGIED 356
ARLID+PHLPEGEA+FR+TE+GIED
Sbjct: 302 ARLIDSPHLPEGEAIFRVTERGIED 326
>emb|CAC12231.1| (AL445066) probable DNA repair protein Rad51 (RadA) [Thermoplasma
acidophilum]
Length = 323
Score = 413 bits (1049), Expect = e-114
Identities = 203/324 (62%), Positives = 256/324 (78%), Gaps = 5/324 (1%)
Query: 33 KKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKII 92
+ ++ +E +TIEDLPGVG ATAEKLRE G+D + AIAVASP +L +V GI EGAA KII
Sbjct: 3 ESNEENREKKTIEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKII 62
Query: 93 QAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKT 152
AARK A++G F +E L++R+SI +++TGSK+LD LLGGG+ETQAITE FGEFGSGKT
Sbjct: 63 AAARKFADIGNFETGEEILERRKSIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGKT 122
Query: 153 QLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARA 212
Q+ H LAV LP E+GG + V+ IDTENTFRPERI ++AK++G DPDE LK I+VARA
Sbjct: 123 QIMHQLAVNCTLPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARA 182
Query: 213 FNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL 272
+NS+HQ+LL ++A+D KE +KLLIVDSLT+HFRSEY+GRG+LAERQQ L KH+
Sbjct: 183 YNSHHQILLAEKAQDTAKEY-----NIKLLIVDSLTAHFRSEYVGRGSLAERQQLLNKHM 237
Query: 273 ADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVA 332
DL R +Y + VTNQV ARPD FFGDP PIGG+I+ H+AT R+YLRK KGGKR+A
Sbjct: 238 HDLLRFGTIYNAVIAVTNQVSARPDVFFGDPMAPIGGNIVGHTATFRIYLRKSKGGKRIA 297
Query: 333 RLIDAPHLPEGEAVFRITEKGIED 356
RLID+P+LPEGE V +I+E+G+ D
Sbjct: 298 RLIDSPYLPEGETVIQISEEGVSD 321
>pir||H71450 probable DNA repair protein - Pyrococcus horikoshii
>gi|3256652|dbj|BAA29335.1| (AP000001) 529aa long
hypothetical DNA repair protein [Pyrococcus horikoshii]
Length = 529
Score = 413 bits (1049), Expect = e-114
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR
Sbjct: 325 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 384
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH
Sbjct: 385 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 444
Query: 272 LADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV 331
LADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV
Sbjct: 445 LADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV 504
Query: 332 ARLIDAPHLPEGEAVFRITEKGIED 356
ARLIDAPHLPEGEAVFRITEKGIED
Sbjct: 505 ARLIDAPHLPEGEAVFRITEKGIED 529
Score = 259 bits (654), Expect = 4e-68
Identities = 137/152 (90%), Positives = 144/152 (94%), Gaps = 1/152 (0%)
Query: 1 MMIMGKKSSDPAVVEINDVDELELEVGEE-VTSKKKKKEKEIRTIEDLPGVGPATAEKLR 59
MMIM KK SDP VVEI++++ L LE+ EE TSKKKKKEKEI++IEDLPGVGPATAEKLR
Sbjct: 1 MMIMVKKGSDPEVVEIDEIEGLGLELEEESTTSKKKKKEKEIKSIEDLPGVGPATAEKLR 60
Query: 60 EAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGR 119
EAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGR
Sbjct: 61 EAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGR 120
Query: 120 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 151
ISTGSKSLDKLLGGGIETQAITEVFGEFGSGK
Sbjct: 121 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 152
>sp|O27436|RADA_METTH RADA PROTEIN >gi|7448303|pir||A69051 DNA repair protein RadA -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622493|gb|AAB85860.1| (AE000901) DNA repair protein
RadA [Methanobacterium thermoautotrophicum]
Length = 311
Score = 379 bits (962), Expect = e-104
Identities = 189/313 (60%), Positives = 242/313 (76%), Gaps = 5/313 (1%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+EDLP VG TA+KLR+AGF + +A A+ EL A I EG A K+I+AAR+A +
Sbjct: 4 LEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKID- 62
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F A + +++R+ +GRI+TGSK+LD+L+GGGIETQAITEVFGEFGSGK+QL+H LAV VQ
Sbjct: 63 FETAFDVMERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVTVQ 122
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQ 223
LP E GGL+ ++IDTENTFRPERI +IA LD +EVL I++ARAFNS+HQ+L+ +
Sbjct: 123 LPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAE 182
Query: 224 QAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYE 283
K+ EL+ K ++L+IVDSLT+HFR+EY+GR ALA RQQKL +HL L +AN Y
Sbjct: 183 ----KVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYN 238
Query: 284 IAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEG 343
AVFVTNQVQARPDAFFG PT+ IGGH+L H+AT R++L+KG GKR+ARL+D+PHLPEG
Sbjct: 239 AAVFVTNQVQARPDAFFGSPTKAIGGHVLGHAATYRIWLKKGLAGKRIARLVDSPHLPEG 298
Query: 344 EAVFRITEKGIED 356
E VF+IT GI D
Sbjct: 299 ECVFKITTAGIVD 311
>pir||D72766 probable radA protein APE0119 - Aeropyrum pernix (strain K1)
>gi|5103509|dbj|BAA79030.1| (AP000058) 319aa long
hypothetical radA protein [Aeropyrum pernix]
Length = 319
Score = 358 bits (910), Expect = 4e-98
Identities = 179/319 (56%), Positives = 241/319 (75%), Gaps = 6/319 (1%)
Query: 38 EKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARK 97
++EI+ I DLPGVGP TA+KL EAG+ TLEAIA A+P E+ + GI A KI+ AAR+
Sbjct: 5 KREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAARE 64
Query: 98 AANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHT 157
A N+ F A + + +I +I+TGS++LD+LLGGGIET+ ITE+FGEFGSGKTQ+ H
Sbjct: 65 ALNID-FKTAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQ 123
Query: 158 LAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNH 217
L+V VQLP ++GGL G +++DTE TFR ERI ++A+ GLDPDEV+K+IY RA NS+H
Sbjct: 124 LSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHH 183
Query: 218 QMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 277
Q+ +V DK+ ++ D +KL++VDS+TSHFR+E+ GR LA RQQ L +HL L R
Sbjct: 184 QIAIV----DKLFTMVKNDN-IKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMR 238
Query: 278 LANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDA 337
LA+++ +AV +TNQV ARPD F+GDPT+ +GGH+L H+ +RVYL+K +G KR+AR++DA
Sbjct: 239 LADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDA 298
Query: 338 PHLPEGEAVFRITEKGIED 356
PHLPEGE VF ITE GI D
Sbjct: 299 PHLPEGETVFAITEWGIRD 317
>gb|AAG20547.1| (AE005125) DNA repair protein; RadA1 [Halobacterium sp. NRC-1]
Length = 386
Score = 353 bits (895), Expect = 2e-96
Identities = 177/336 (52%), Positives = 238/336 (70%), Gaps = 24/336 (7%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+E+LPGVGPATAEKLR+ GFD +++AVA+ EL A I E A +IQAAR+AA++G
Sbjct: 49 LEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAADVGG 108
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F L++RE IG+++ +D LLGGG+ETQ+ITEV+GEFG+GK+Q+ H LAV VQ
Sbjct: 109 FETGATVLERREQIGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQ 168
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAKN---------------RGLDPDE------ 202
LP E GGL+G ++ID+E+TFRPERI ++ + G DE
Sbjct: 169 LPTEYGGLHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTEL 228
Query: 203 ---VLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRG 259
L I+VA+ FNSNHQMLL ++A++ E + D PV++L VDSLT+HFR+EY+GRG
Sbjct: 229 VDAFLDKIHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRG 288
Query: 260 ALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLR 319
LA+RQQKL KHL DL ++ NLY AV VTNQVQ+ PDAFFGDPT+PIGG+IL H +T R
Sbjct: 289 ELADRQQKLNKHLHDLEKVGNLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFR 348
Query: 320 VYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIE 355
+YLRK K KR+ +L+DAP+L +GEAV R+ ++G++
Sbjct: 349 MYLRKSKNDKRIVKLVDAPNLADGEAVMRVQDEGLK 384
>sp|Q55075|RADA_SULSO DNA REPAIR PROTEIN RADA >gi|2129447|pir||S71093 radA protein -
Sulfolobus solfataricus >gi|1378036|gb|AAC44123.1|
(U45310) RadA [Sulfolobus solfataricus]
Length = 324
Score = 353 bits (895), Expect = 2e-96
Identities = 179/325 (55%), Positives = 236/325 (72%), Gaps = 5/325 (1%)
Query: 32 SKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKI 91
S + +++K I+TI DLPG+ KL EAG+ +LE +AVASP +L AGI A KI
Sbjct: 2 SNEVEQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKI 61
Query: 92 IQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 151
I+ AR A ++ F A E K+R ++ +ISTGS++LD LL GGIET+ +TE FGEFGSGK
Sbjct: 62 IKEARDALDI-RFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGK 120
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+V VQLPPE+GGL+G ++IDTE TFR ERI +AK GLD D V+ +IY R
Sbjct: 121 TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V D ++EL++ D +KL++VDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 181 AINTDHQIAIV----DDLQELVSKDPSIKLIVVDSVTSHFRAEYPGREILAVRQQKLNKH 236
Query: 272 LADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV 331
L L RLA +Y+IAV +TNQV ARPD F+GDPT +GGH L H +R+ L+K +G +R+
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRI 296
Query: 332 ARLIDAPHLPEGEAVFRITEKGIED 356
AR++DAPHLPEGE VF +TE+GI D
Sbjct: 297 ARVVDAPHLPEGEVVFALTEEGIRD 321
>dbj|BAA88984.1| (AB026115) RadA [Pyrobaculum islandicum]
Length = 315
Score = 353 bits (895), Expect = 2e-96
Identities = 183/313 (58%), Positives = 235/313 (74%), Gaps = 6/313 (1%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+E+L GVG T KL+E GF T+ +A AS EL E+ G +E A +I++AARK L +
Sbjct: 9 VEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-NEERAQQIVEAARKMLGLHS 67
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F+ A E ++R+ I RISTG ++LD+LLGGGIET+A+TEV GEFGSGKTQL H LAVMVQ
Sbjct: 68 FVSALEVYERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQ 127
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQ 223
L E GGL I+IDTENTFRPERI +IAK RGLDPD+ L +I+ ARA++S+HQM+LV
Sbjct: 128 LAEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVD 187
Query: 224 QAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYE 283
QA+ I++ V LLIVDS+ +HFRSE+ GR LAERQQKL KH+ADL RLA+ Y+
Sbjct: 188 QAKSIIRQ-----HNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYD 242
Query: 284 IAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEG 343
+AV +TNQV A+PD FFG+P RP GG+ILAH AT R++LRK K R+A++ D+P+ PEG
Sbjct: 243 VAVVITNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEG 302
Query: 344 EAVFRITEKGIED 356
E FRITE+G+ D
Sbjct: 303 EVSFRITEEGLVD 315
>gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus]
Length = 324
Score = 352 bits (894), Expect = 3e-96
Identities = 179/325 (55%), Positives = 236/325 (72%), Gaps = 5/325 (1%)
Query: 32 SKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKI 91
S + +++K I+TI DLPG+ KL EAG+ +LE +AVASP +L AGI A KI
Sbjct: 2 SNEVEQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKI 61
Query: 92 IQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 151
I+ AR A ++ F A E K+R ++ +ISTGS++LD LL GGIET+ +TE FGEFGSGK
Sbjct: 62 IKEARDALDI-RFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGK 120
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+V VQLPPE+GGL+G ++IDTE TFR ERI +AK GLD D V+ +IY R
Sbjct: 121 TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V D ++EL++ D +KL++VDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 181 AINTDHQIAIV----DDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 272 LADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV 331
L L RLA +Y+IAV +TNQV ARPD F+GDPT +GGH L H +R+ L+K +G +R+
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRI 296
Query: 332 ARLIDAPHLPEGEAVFRITEKGIED 356
AR++DAPHLPEGE VF +TE+GI D
Sbjct: 297 ARVVDAPHLPEGEVVFALTEEGIRD 321
>sp|Q48328|RADA_HALVO DNA REPAIR PROTEIN RADA >gi|2129410|pir||S71094 radA protein -
Haloferax volcanii >gi|1378032|gb|AAC44121.1| (U45311)
RadA [Haloferax volcanii]
Length = 343
Score = 351 bits (891), Expect = 7e-96
Identities = 177/338 (52%), Positives = 241/338 (70%), Gaps = 28/338 (8%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+E LPGVGPATA+KL E+G+D+ ++IAVASP EL A I A II AAR AA++G
Sbjct: 6 LESLPGVGPATADKLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGG 65
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F L++R+ IG++S +D+LLGGG+ETQ+ITEV+GEFG+GK+Q+ H LAV VQ
Sbjct: 66 FETGSMVLERRQQIGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQ 125
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDP----------------------- 200
LPPE+GGL G I+ID+E+TFRPERI ++ RGL+
Sbjct: 126 LPPEQGGLGGGCIFIDSEDTFRPERIDDMV--RGLEDEALEATLDDREMEGSIDDEETIK 183
Query: 201 ---DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIG 257
D+ L I+VA+AFNSNHQ+LL ++A++ E +T+ PV+LL VDSLT+HFR+EY+G
Sbjct: 184 ALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVG 243
Query: 258 RGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 317
RG LAERQQKL KHL DL R+ +L+ + VTNQV + PD++FGDPT+PIGG+IL H++T
Sbjct: 244 RGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVSSNPDSYFGDPTQPIGGNILGHTST 303
Query: 318 LRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIE 355
R+YLRK KG KR+ RL+DAP+L +GEA+ R+ + G++
Sbjct: 304 FRIYLRKSKGDKRIVRLVDAPNLADGEAIMRVQDAGLK 341
>pir||T43802 recombination/repair protein radA [imported] - Halobacterium
salinarum >gi|4322492|gb|AAD16062.1| (AF090196)
recombination/repair protein RadA [Halobacterium
halobium]
Length = 353
Score = 342 bits (869), Expect = 3e-93
Identities = 173/336 (51%), Positives = 232/336 (68%), Gaps = 24/336 (7%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+EDLPGVGP T EKLR++GFD + + VA+ EL A I E A +IQAAR+AA++G
Sbjct: 16 LEDLPGVGPPTTEKLRDSGFDAFQILTVANSAELSNTADIGESTAADVIQAAREAADVGG 75
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F L+ RE IG+++ +D LLGGG+ETQ+ITEV+GEFG+GK+Q+ H LAV VQ
Sbjct: 76 FETGATVLEPREQIGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQ 135
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAKN---------------RGLDPDE------ 202
LP E G L+G ++ID+E+TFRPERI ++ + G DE
Sbjct: 136 LPTEYGALHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTEL 195
Query: 203 ---VLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRG 259
L I+VA+ FNSNHQMLL ++A++ E + D PV++L VDSLT+HFR+EY+GRG
Sbjct: 196 VDAFLDKIHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRG 255
Query: 260 ALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLR 319
LA+RQQKL KHL DL + +LY AV VTNQVQ+ PDAFFGDPT+PIGG+IL H +T R
Sbjct: 256 ELADRQQKLNKHLHDLEPVGDLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFR 315
Query: 320 VYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIE 355
+YLRK K KR+ +L+DAP+L +GEAV R+ ++G++
Sbjct: 316 MYLRKSKNDKRIVKLVDAPNLADGEAVMRVQDEGLK 351
>gb|AAD33955.1|AF145465_1 (AF145465) recombination/repair protein RadA [Desulfurococcus
amylolyticus]
Length = 328
Score = 342 bits (868), Expect = 4e-93
Identities = 175/322 (54%), Positives = 230/322 (71%), Gaps = 6/322 (1%)
Query: 35 KKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQA 94
K++ ++ D+PGVG + A+KL AG+ + +I VA EL E G+ KII+
Sbjct: 9 KERSSGFISVRDIPGVGSSIADKLEAAGYLSAWSIVVARAEELAERTGLPVLTVQKIIEN 68
Query: 95 ARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQL 154
ARK + TF A E ++R +IG+I+TGSKSLD+LLGGG+ET+ ITE FGE+GSGKTQ+
Sbjct: 69 ARKMLGI-TFKTAREVKQERSNIGKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQI 127
Query: 155 AHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFN 214
H L+V VQL PE+GGLNG ++IDTE TFR ERI +A+ GLDPD+V+ +IY RA+N
Sbjct: 128 CHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYN 187
Query: 215 SNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD 274
S+HQ+ +V + + + V+L+I+DS+TSHFR+EY GR LAERQQKL HL
Sbjct: 188 SDHQIAIVDELFTFVPK-----NDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLHQ 242
Query: 275 LHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARL 334
L RLA Y +AV VTNQV ARPD F+GDPT +GGH+LAH+ +R+ LRK KG KR+AR+
Sbjct: 243 LMRLAEAYNVAVVVTNQVMARPDVFYGDPTTAVGGHVLAHTPGVRIQLRKSKGNKRIARV 302
Query: 335 IDAPHLPEGEAVFRITEKGIED 356
+DAPHLPEGE VF ITE+GI D
Sbjct: 303 VDAPHLPEGEVVFVITEEGIRD 324
>pir||S71095 radA protein - Methanococcus jannaschii
Length = 320
Score = 339 bits (860), Expect = 3e-92
Identities = 179/322 (55%), Positives = 234/322 (72%), Gaps = 14/322 (4%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+ LPGVGP TAEKL+EAG+ IA AS EL E+ GISE AA +II+AAR+ NLG
Sbjct: 4 LTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAARIIEAARELCNLG- 62
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F E L +R++I ++STGSK+LD++LGGG+E+Q++TE G FGSGKTQ+AH V +Q
Sbjct: 63 FKSGTEVLSQRKNIWKLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQ 122
Query: 164 LPPE---EGGLNGSV------IWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFN 214
P + + + ++IDTE TFRPERI ++A+ GLD +EVL +I+VARA+N
Sbjct: 123 CPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYN 182
Query: 215 SNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD 274
S+ QML + E+ I+E N +KL+IVDSLTS FR+EYIGRG LAERQQKL +H+A
Sbjct: 183 SDMQMLYAENVENLIREGHN----IKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMAT 238
Query: 275 LHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARL 334
L++LA++Y V VTNQV ARPDA FG + IGGHI+ H+AT R++LRK KG KRVA+L
Sbjct: 239 LNKLADIYNCVVIVTNQVAARPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKL 298
Query: 335 IDAPHLPEGEAVFRITEKGIED 356
D+PHLP+ EA+FRITEKGI D
Sbjct: 299 YDSPHLPDAEAMFRITEKGIHD 320
>sp|Q49593|RADA_METJA DNA REPAIR PROTEIN RADA >gi|2127856|pir||E64408 DNA repair protein
radA - Methanococcus jannaschii >gi|2146708|pir||S71096
radA protein - Methanococcus jannaschii
>gi|1378034|gb|AAC44122.1| (U45312) RadA [Methanococcus
jannaschii] >gi|1591553|gb|AAB98875.1| (U67531) DNA
repair protein RAD51 (radA) [Methanococcus jannaschii]
Length = 352
Score = 339 bits (860), Expect = 3e-92
Identities = 179/322 (55%), Positives = 234/322 (72%), Gaps = 14/322 (4%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+ LPGVGP TAEKL+EAG+ IA AS EL E+ GISE AA +II+AAR+ NLG
Sbjct: 36 LTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAARIIEAARELCNLG- 94
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F E L +R++I ++STGSK+LD++LGGG+E+Q++TE G FGSGKTQ+AH V +Q
Sbjct: 95 FKSGTEVLSQRKNIWKLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQ 154
Query: 164 LPPE---EGGLNGSV------IWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFN 214
P + + + ++IDTE TFRPERI ++A+ GLD +EVL +I+VARA+N
Sbjct: 155 CPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYN 214
Query: 215 SNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD 274
S+ QML + E+ I+E N +KL+IVDSLTS FR+EYIGRG LAERQQKL +H+A
Sbjct: 215 SDMQMLYAENVENLIREGHN----IKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMAT 270
Query: 275 LHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARL 334
L++LA++Y V VTNQV ARPDA FG + IGGHI+ H+AT R++LRK KG KRVA+L
Sbjct: 271 LNKLADIYNCVVIVTNQVAARPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKL 330
Query: 335 IDAPHLPEGEAVFRITEKGIED 356
D+PHLP+ EA+FRITEKGI D
Sbjct: 331 YDSPHLPDAEAMFRITEKGIHD 352
>gb|AAC23499.1| (AF008421) RadA [Methanococcus voltae]
Length = 322
Score = 323 bits (820), Expect = 1e-87
Identities = 171/323 (52%), Positives = 228/323 (69%), Gaps = 15/323 (4%)
Query: 44 IEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
+ DLPGVGP+TAEKL EAG+ IA A+ EL ++ GISE AA K+I AR +LG
Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLG- 63
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F + LK+R ++ ++ST S LD +LGGG+E+Q++TE G FGSGKTQ+ H V +Q
Sbjct: 64 FKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123
Query: 164 LPP-----EEGGLNGSV-----IWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAF 213
P EE G V ++IDTE TFRPERI ++A++ G+D VL + +VARA+
Sbjct: 124 NPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAY 183
Query: 214 NSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 273
NS+ QML ++ ED I+E N +KL+++DSLTS FR+EY GRG LAERQQKL +H+A
Sbjct: 184 NSDMQMLFAEKIEDLIQEGNN----IKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMA 239
Query: 274 DLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVAR 333
L++LA+L+ V VTNQV A+PDAFFG + IGGHI+ H+AT R ++RKGKG KRVA+
Sbjct: 240 TLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAK 299
Query: 334 LIDAPHLPEGEAVFRITEKGIED 356
L D+PHLP+ EA+FRITEKGI+D
Sbjct: 300 LYDSPHLPDAEAIFRITEKGIQD 322
>gb|AAD16063.1| (AF090197) recombination/repair protein RadA [Cenarchaeum
symbiosum]
Length = 369
Score = 309 bits (782), Expect = 4e-83
Identities = 156/293 (53%), Positives = 206/293 (70%), Gaps = 10/293 (3%)
Query: 69 IAVASPIELKEVAGISEGAALKIIQAARKA-ANLGT----FMRADEYLKKRESIGRISTG 123
+ V P+EL E++ +S KI+ ARK A G F E K+R+SIG I+TG
Sbjct: 4 LVVRGPVELGEISSMSSEICEKIVTIARKRLAETGAITKDFASGSEIYKRRQSIGMITTG 63
Query: 124 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 183
+ +LD LLGGGIETQAITEVFGEFGSGKTQ HT+ V Q P EEGGL G V++IDTE T
Sbjct: 64 TDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGT 123
Query: 184 FRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLI 243
FRPER+ IAK +DP ++L I VARA+NS+HQ+L++++A I+E + +KL+I
Sbjct: 124 FRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQE-----ENIKLII 178
Query: 244 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDP 303
DS T FRSEY+GRG LA RQQKL +++ L R+A Y AV TNQV + PD+FFGDP
Sbjct: 179 SDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSSPDSFFGDP 238
Query: 304 TRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
TRP+GG+++ H++T R+Y RKG KRVA++ID+PH P EAVF + E+G++D
Sbjct: 239 TRPVGGNVVGHASTYRIYFRKGGKNKRVAKIIDSPHHPASEAVFELGERGVQD 291
>gb|AAF42940.1|AF234170_1 (AF234170) DMC1 protein [Hordeum vulgare]
Length = 344
Score = 284 bits (718), Expect = 1e-75
Identities = 159/326 (48%), Positives = 216/326 (65%), Gaps = 10/326 (3%)
Query: 35 KKKEKEIRTIEDL--PGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKII 92
+++E+ +I+ L G+ +KL++AG T + + + L + G+SE KI
Sbjct: 22 EEEEECFESIDKLITQGINAGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKIC 81
Query: 93 QAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKT 152
+AA K + G FM + L KR+S+ RI+TGS++LD+LLGGGIET ITE FGEF SGKT
Sbjct: 82 EAAEKLLSQG-FMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKT 140
Query: 153 QLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARA 212
QLAHTL V QLP G NG V +IDTE TFRPERI IA+ G+D + VL +I ARA
Sbjct: 141 QLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARA 200
Query: 213 FNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL 272
+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQQKLA+ L
Sbjct: 201 YTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQML 255
Query: 273 ADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKR 330
+ L ++A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LRKGKG +R
Sbjct: 256 SRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGKGEQR 315
Query: 331 VARLIDAPHLPEGEAVFRITEKGIED 356
V ++ DAP+LPEGEAVF+IT G+ D
Sbjct: 316 VCKIFDAPNLPEGEAVFQITTGGLAD 341
>dbj|BAB16892.1| (AB041944) DMC1 [Cynops pyrrhogaster]
Length = 342
Score = 283 bits (717), Expect = 2e-75
Identities = 159/339 (46%), Positives = 215/339 (62%), Gaps = 9/339 (2%)
Query: 23 ELEVGEEVTSKKKKKEKEIRTIEDLP--GVGPATAEKLREAGFDTLEAIAVASPIELKEV 80
E +V EE ++E + I+ L G+ A +KL+ G T++ I + + L +
Sbjct: 5 EDQVVEEEVGLHDEEESFFQDIDMLQKHGINVADIKKLKSVGICTVKGIQMTTKKALCNI 64
Query: 81 AGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAI 140
G+SE KI +A K G F+ A EY +KR+ + I+TGS+ DKLLGGGIE+ AI
Sbjct: 65 KGLSEAKVDKIKEAVNKLIEPG-FLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAI 123
Query: 141 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDP 200
TE FGEF +GKTQL+HTL V QLP +G G VI+IDTENTFRP+R+R+IA +D
Sbjct: 124 TETFGEFRTGKTQLSHTLCVTAQLPGTDGYTGGKVIFIDTENTFRPDRLRDIADRFSVDH 183
Query: 201 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGA 260
D VL ++ ARA+ S HQM L+ K E KLL++DS+ + FR ++ GRG
Sbjct: 184 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGI---FKLLVIDSIMALFRVDFSGRGE 240
Query: 261 LAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHSAT 317
LAERQQKLA+ LA L +++ Y +AVFVTNQ+ A P A F DP +PIGGHILAH++T
Sbjct: 241 LAERQQKLAQMLARLQKISEEYNVAVFVTNQMTADPGAAMSFQADPKKPIGGHILAHAST 300
Query: 318 LRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
R+ LRKG+G R+A++ D+P +PE EA F IT GI D
Sbjct: 301 TRISLRKGRGELRIAKIYDSPDMPENEATFAITAGGISD 339
>gb|AAC16335.1| (AF062380) Dmc1 homolog [Leishmania major]
Length = 364
Score = 282 bits (714), Expect = 4e-75
Identities = 151/312 (48%), Positives = 212/312 (67%), Gaps = 10/312 (3%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+G A KL++AG T+ + + +L ++ G+SE KII+AAR+ + +G F+
Sbjct: 56 GIGAADITKLKQAGIFTVPGVQMQCRKDLIQIKGLSEAKVDKIIEAARRVSEVG-FITGS 114
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGG-IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 167
L++R ++ RISTGS +LD+LLGGG IE+++ITE FGEF +GKTQ+ HTL V QLP E
Sbjct: 115 SCLQQRSTLLRISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLE 174
Query: 168 EGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAED 227
GG NG +++DTE TFRPERIR IA+ G+D + VL +I VARA+ HQ L+
Sbjct: 175 MGGGNGKAVYVDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAA 234
Query: 228 KIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVF 287
K+ E LL+VDS+T+ FR ++ GRG LAERQQKLAK L+ L ++A + IAV+
Sbjct: 235 KMAE-----DQFSLLVVDSITALFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVY 289
Query: 288 VTNQVQARP---DAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
+TNQV + P F DP +P+GGHILAH++T R+ LRKG+G +RV ++ D+P LPE E
Sbjct: 290 ITNQVVSDPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIFDSPSLPELE 349
Query: 345 AVFRITEKGIED 356
V+ I+E+GI D
Sbjct: 350 CVYSISEQGIID 361
>sp|P37384|DMC1_LILLO MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG >gi|629874|pir||JC2214
hypothetical 38.3K protein, LIM15 - trumpet lily
>gi|431168|dbj|BAA04845.1| (D21821) RAD51-like protein
[Lilium longiflorum]
Length = 349
Score = 280 bits (710), Expect = 1e-74
Identities = 155/335 (46%), Positives = 217/335 (64%), Gaps = 13/335 (3%)
Query: 29 EVTSKKKKKEKEIRTIEDLP-----GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGI 83
++ +++ +E+E E + G+ +KL++AG T + + + L + G+
Sbjct: 18 QLLDRQEAEEEEEDCFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGL 77
Query: 84 SEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEV 143
SE KI +AA K N+G ++ + L KR+S+ RI+TGS++LD+LLGGGIET ITE
Sbjct: 78 SEAKVDKICEAAEKLVNVG-YITGSDVLLKRKSVIRITTGSQALDELLGGGIETLQITEA 136
Query: 144 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEV 203
FGEF SGKTQ+AHTL V QLP G NG V +IDTE TFRP+RI IA+ G+D V
Sbjct: 137 FGEFRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDASAV 196
Query: 204 LKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAE 263
L +I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAE
Sbjct: 197 LDNIIYARAYTYEHQYNLLLALAAKMSE-----EPFRLLIVDSVIALFRVDFSGRGELAE 251
Query: 264 RQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVY 321
RQQKLA+ L+ L ++A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+
Sbjct: 252 RQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATVRLM 311
Query: 322 LRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
LRKGKG +RV ++ DAP+LPE EAVF+IT G+ D
Sbjct: 312 LRKGKGEQRVCKIFDAPNLPESEAVFQITPGGVAD 346
>sp|Q14565|DMC1_HUMAN MEIOTIC RECOMBINATION PROTEIN DMC1/LIM15 HOMOLOG
>gi|1363937|pir||JC4333 meiosis-specific RecA-like
protein - human >gi|1066001|dbj|BAA09932.1| (D63882)
HsLim15 [Homo sapiens]
Length = 340
Score = 279 bits (707), Expect = 3e-74
Identities = 153/311 (49%), Positives = 203/311 (65%), Gaps = 7/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ A +KL+ G T++ I + + L V G+SE KI +AA K G F+ A
Sbjct: 31 GINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPG-FLTAF 89
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +KR+ + I+TGS+ DKLLGGGIE+ AITE FGEF +GKTQL+HTL V QLP
Sbjct: 90 EYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG 149
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G G +I+IDTENTFRP+R+R+IA +D D VL ++ ARA+ S HQM L+ K
Sbjct: 150 GYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDPVLDNVLYARAYTSEHQMELLDYVAAK 209
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
E KLLI+DS+ + FR ++ GRG LAERQQKLA+ L+ L +++ Y +AVFV
Sbjct: 210 FHEEAGI---FKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 266
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQ+ A P A F DP +PIGGHILAH++T R+ LRKG+G R+A++ D+P +PE EA
Sbjct: 267 TNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEA 326
Query: 346 VFRITEKGIED 356
F IT GI D
Sbjct: 327 TFAITAGGIGD 337
>sp|Q96449|DMC1_SOYBN MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG >gi|7448302|pir||T08838
RecA/Rad51/DMC1-like protein - soybean
>gi|1518157|gb|AAB07025.1| (U66836) RecA/Rad51/DMC1-like
protein [Glycine max]
Length = 345
Score = 279 bits (707), Expect = 3e-74
Identities = 151/310 (48%), Positives = 206/310 (65%), Gaps = 8/310 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL++AG T + + + L + G+SE KI +AA K N G ++
Sbjct: 39 GINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLVNFG-YITGS 97
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ L KR+S+ RI+TGS++LD+LLGGG+ET AITE FGEF SGKTQLAHTL V QLP
Sbjct: 98 DALLKRKSVIRITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNM 157
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K
Sbjct: 158 RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 217
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E +P +LLIVDS+ + FR ++ GRG LA+RQQKLA+ L+ L ++A + +AV++
Sbjct: 218 MSE-----EPFRLLIVDSVIALFRVDFSGRGELADRQQKLAQMLSRLIKIAEEFNVAVYM 272
Query: 289 TNQVQARP--DAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV + P F DP +P GGH+LAH+AT+R+ RKGKG +R+ ++ DAP+LPE EAV
Sbjct: 273 TNQVISDPGGGVFVTDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPEAEAV 332
Query: 347 FRITEKGIED 356
F+IT GI D
Sbjct: 333 FQITAGGIAD 342
>emb|CAB45656.1| (AL022320) dJ199H16.1 (DMC1 ((dosage suppressor of mck1, yeast
homolog) meiosis-specific homologous recombination
protein (LIM15))) [Homo sapiens]
Length = 340
Score = 279 bits (707), Expect = 3e-74
Identities = 153/311 (49%), Positives = 203/311 (65%), Gaps = 7/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ A +KL+ G T++ I + + L V G+SE KI +AA K G F+ A
Sbjct: 31 GINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPG-FLTAF 89
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +KR+ + I+TGS+ DKLLGGGIE+ AITE FGEF +GKTQL+HTL V QLP
Sbjct: 90 EYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG 149
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G G +I+IDTENTFRP+R+R+IA +D D VL ++ ARA+ S HQM L+ K
Sbjct: 150 GYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAK 209
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
E KLLI+DS+ + FR ++ GRG LAERQQKLA+ L+ L +++ Y +AVFV
Sbjct: 210 FHEEAGI---FKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 266
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQ+ A P A F DP +PIGGHILAH++T R+ LRKG+G R+A++ D+P +PE EA
Sbjct: 267 TNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEA 326
Query: 346 VFRITEKGIED 356
F IT GI D
Sbjct: 327 TFAITAGGIGD 337
>gi|5901996 DMC1 (dosage suppressor of mck1, yeast homolog) meiosis-specific
homologous recombination; disrupted meiotic cDNA1,
yeast, homolog of [Homo sapiens] >gi|2135607|pir||S62354
meiosis-specific recombination protein DMC1 - human
>gi|1321636|dbj|BAA10970.1| (D64108) DMC1 homologue
[Homo sapiens]
Length = 340
Score = 279 bits (706), Expect = 3e-74
Identities = 153/311 (49%), Positives = 203/311 (65%), Gaps = 7/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ A +KL+ G T++ I + + L V G+SE KI +AA K G F+ A
Sbjct: 31 GINVADNKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPG-FLTAF 89
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +KR+ + I+TGS+ DKLLGGGIE+ AITE FGEF +GKTQL+HTL V QLP
Sbjct: 90 EYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG 149
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G G +I+IDTENTFRP+R+R+IA +D D VL ++ ARA+ S HQM L+ K
Sbjct: 150 GYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAK 209
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
E KLLI+DS+ + FR ++ GRG LAERQQKLA+ L+ L +++ Y +AVFV
Sbjct: 210 FHEEAGI---FKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 266
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQ+ A P A F DP +PIGGHILAH++T R+ LRKG+G R+A++ D+P +PE EA
Sbjct: 267 TNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEA 326
Query: 346 VFRITEKGIED 356
F IT GI D
Sbjct: 327 TFAITAGGIGD 337
>sp|Q91918|R511_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 1 (XRAD51.1)
>gi|1054624|dbj|BAA07501.1| (D38489) XRad51.1 [Xenopus
laevis]
Length = 336
Score = 279 bits (706), Expect = 3e-74
Identities = 157/331 (47%), Positives = 213/331 (63%), Gaps = 10/331 (3%)
Query: 29 EVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAA 88
E T ++ + I +E G+ +KL EAGF T+EA+A A EL + GISE A
Sbjct: 10 EATEEEHFGPQAISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAKA 68
Query: 89 LKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFG 148
KI+ A K +G F A E+ ++R I +ISTGSK LDKLL GG+ET +ITE+FGEF
Sbjct: 69 EKILAEAAKLVPMG-FTTATEFHQRRSEIIQISTGSKELDKLLQGGVETGSITEMFGEFR 127
Query: 149 SGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIY 208
+GKTQL HTLAV QLP + GG G ++IDTE TFRPER+ +A+ GL +VL ++
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 209 VARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 268
ARAFN++HQ L+ QA + E LLIVDS T+ +R++Y GRG L+ RQ L
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAE-----SRYALLIVDSATALYRTDYSGRGELSARQMHL 242
Query: 269 AKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKG 325
A+ L L RLA+ + +AV +TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG
Sbjct: 243 ARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 302
Query: 326 KGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+G R+ ++ D+P LPE EA+F I G+ D
Sbjct: 303 RGETRICKIYDSPCLPEAEAMFAINADGVGD 333
>pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans
Length = 391
Score = 278 bits (703), Expect = 8e-74
Identities = 154/312 (49%), Positives = 205/312 (65%), Gaps = 10/312 (3%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ KL+EAG+ T E++A + EL+ V GIS+ A KI++ A K +G F
Sbjct: 82 GISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQMG-FTTGA 140
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E KR + +I TGS SLD+LLGGGIET +ITEV+GE+ +GKTQL H+LAV+ QLP +
Sbjct: 141 EVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDM 200
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDT TFRPERI IA+ +D VL++I VARA+NS H M L+ +A
Sbjct: 201 GGGEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAM 260
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E ++IVD T+HFR+EY GRG LAERQ KL+ L L +LA+ Y +AV +
Sbjct: 261 MSE-----SRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVII 315
Query: 289 TNQVQARPDA----FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
TNQV A+ D F D +PIGGHI+AH +T R+YLRKGKG RVA+++ +P+LPE E
Sbjct: 316 TNQVVAQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 375
Query: 345 AVFRITEKGIED 356
A + IT GIED
Sbjct: 376 ATYSITNHGIED 387
>pir||T37305 rad51 protein, short isoform - Caenorhabditis elegans
>gi|2913897|dbj|BAA24982.1| (AB011382)
RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans]
>gi|3786402|gb|AAD10194.1| (AF061201) RAD51 short
isoform [Caenorhabditis elegans]
>gi|6434484|emb|CAB61038.1| (AL023838) predicted using
Genefinder~contains similarity to Pfam domain: PF00633
(Helix-hairpin-helix motif.), Score=30.1,
E-value=1.7e-05, N=1~cDNA EST CEMSE47F comes from this
gene~cDNA EST yk241d12.3 comes from this gene~cDNA EST
yk401c3.3 comes fr>
Length = 357
Score = 278 bits (703), Expect = 8e-74
Identities = 154/312 (49%), Positives = 205/312 (65%), Gaps = 10/312 (3%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ KL+EAG+ T E++A + EL+ V GIS+ A KI++ A K +G F
Sbjct: 48 GISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQMG-FTTGA 106
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E KR + +I TGS SLD+LLGGGIET +ITEV+GE+ +GKTQL H+LAV+ QLP +
Sbjct: 107 EVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDM 166
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDT TFRPERI IA+ +D VL++I VARA+NS H M L+ +A
Sbjct: 167 GGGEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAM 226
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E ++IVD T+HFR+EY GRG LAERQ KL+ L L +LA+ Y +AV +
Sbjct: 227 MSE-----SRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVII 281
Query: 289 TNQVQARPDA----FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
TNQV A+ D F D +PIGGHI+AH +T R+YLRKGKG RVA+++ +P+LPE E
Sbjct: 282 TNQVVAQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 341
Query: 345 AVFRITEKGIED 356
A + IT GIED
Sbjct: 342 ATYSITNHGIED 353
>gb|AAC49617.1| (U76670) AtDMC1 [Arabidopsis thaliana]
Length = 344
Score = 277 bits (702), Expect = 1e-73
Identities = 151/310 (48%), Positives = 202/310 (64%), Gaps = 8/310 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL+EAG T + + + L + G+SE KI +AA K N G +M
Sbjct: 38 GINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFG-YMTGS 96
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ L KR+S+ +I+TG ++LD LLGGGIET AITE FGEF SGKTQLAHTL V QLP
Sbjct: 97 DALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNM 156
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K
Sbjct: 157 KGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 216
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E +P ++LIVDS+ + FR ++ GRG LA+RQQKLA+ L+ L ++A + +AV++
Sbjct: 217 MSE-----EPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYM 271
Query: 289 TNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV A P F DP +P GGH+LAH+AT+R+ RKGKG RV ++ DAP+L E EA
Sbjct: 272 TNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEAS 331
Query: 347 FRITEKGIED 356
F+IT+ GI D
Sbjct: 332 FQITQGGIAD 341
>dbj|BAA78377.1| (AB020740) Rad51 [Cynops pyrrhogaster]
Length = 337
Score = 277 bits (701), Expect = 1e-73
Identities = 152/311 (48%), Positives = 205/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAGF T+EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 30 GINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAKADKILAEAAKLVPMG-FTTAT 88
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +++TGSK LDKLL GGIET +ITE+FGEF +GKTQL HTLAV QLP +
Sbjct: 89 EFHQRRSEIIQVTTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDR 148
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ ARAFN++HQ L+ QA
Sbjct: 149 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAM 208
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + +AV +
Sbjct: 209 MAE-----SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 263
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 264 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA 323
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 324 MFAINPDGVGD 334
>sp|Q91917|R512_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 2 (XRAD51.2)
>gi|1054622|dbj|BAA07500.1| (D38488) XRad51.2 [Xenopus
laevis]
Length = 336
Score = 277 bits (701), Expect = 1e-73
Identities = 156/331 (47%), Positives = 212/331 (63%), Gaps = 10/331 (3%)
Query: 29 EVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAA 88
E T ++ + I +E G+ +KL +AGF T+EA+A A EL + GISE A
Sbjct: 10 EATEEENFGPQAITRLEQC-GINANDVKKLEDAGFHTVEAVAYAPKKELLNIKGISEAKA 68
Query: 89 LKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFG 148
KI+ A K +G F A E+ ++R I +I TGSK LDKLL GGIET +ITE+FGEF
Sbjct: 69 EKILAEAAKLVPMG-FTTATEFHQRRSEIIQIGTGSKELDKLLQGGIETGSITEMFGEFR 127
Query: 149 SGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIY 208
+GKTQL HTLAV QLP + GG G ++IDTE TFRPER+ +A+ GL +VL ++
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 209 VARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 268
ARAFN++HQ L+ QA + E LLIVDS T+ +R++Y GRG L+ RQ L
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAE-----SRYALLIVDSATALYRTDYSGRGELSARQMHL 242
Query: 269 AKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKG 325
A+ L L RLA+ + +AV +TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG
Sbjct: 243 ARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 302
Query: 326 KGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+G R+ ++ D+P LPE EA+F I G+ D
Sbjct: 303 RGETRICKIYDSPCLPEAEAMFAINADGVGD 333
>gi|6753650 disrupted meiotic cDNA 1 homolog [Mus musculus]
>gi|2500100|sp|Q61880|DMC1_MOUSE MEIOTIC RECOMBINATION
PROTEIN DMC1/LIM15 HOMOLOG >gi|1085524|pir||JC4191
meiosis-specific recombination protein DMC1 homolog -
mouse >gi|961476|dbj|BAA09590.1| (D58419) MmLim15
protein [Mus musculus] >gi|1321647|dbj|BAA10969.1|
(D64107) DMC1 homologue [Mus musculus]
Length = 340
Score = 277 bits (700), Expect = 2e-73
Identities = 156/339 (46%), Positives = 216/339 (63%), Gaps = 9/339 (2%)
Query: 23 ELEVGEEVTSKKKKKEKEIRTIEDLP--GVGPATAEKLREAGFDTLEAIAVASPIELKEV 80
E +V +E + + +E + I+ L G+ A +KL+ G T++ I + + L V
Sbjct: 3 EDQVVQEESGFQDDEESLFQDIDLLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNV 62
Query: 81 AGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAI 140
G+SE KI +AA K G F+ A +Y ++R+ + I+TGS+ DKLLGGGIE+ AI
Sbjct: 63 KGLSEAKVEKIKEAANKLIEPG-FLTAFQYSERRKMVFHITTGSQEFDKLLGGGIESMAI 121
Query: 141 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDP 200
TE FGEF +GKTQL+HTL V QLP G G +I+IDTENTFRP+R+R+IA +D
Sbjct: 122 TEAFGEFRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDH 181
Query: 201 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGA 260
+ VL ++ ARA+ S HQM L+ K E KLLI+DS+ + FR ++ GRG
Sbjct: 182 EAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGI---FKLLIIDSIMALFRVDFSGRGE 238
Query: 261 LAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHSAT 317
LAERQQKLA+ L+ L +++ Y +AVFVTNQ+ A P A F DP +PIGGHILAH++T
Sbjct: 239 LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHAST 298
Query: 318 LRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
R+ LRKG+G R+A++ D+P +PE EA F IT GI D
Sbjct: 299 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 337
>gi|6321027 meiosis-specific protein related to RecA and Rad51p. Dmc1p
colocalizes with Rad51p to discrete subnuclear sites in
nuclear spreads during mid prophase, briefly colocalizes
with Zip1p, and then disappears by pachytene; Dmc1p
[Saccharomyces cerevisiae]
>gi|118683|sp|P25453|DMC1_YEAST MEIOTIC RECOMBINATION
PROTEIN DMC1 >gi|419829|pir||A38214 meiosis-specific
recombination protein DMC1 [validated] - yeast
(Saccharomyces cerevisiae) >gi|171401|gb|AAA34571.1|
(M87549) Dmc1 [Saccharomyces cerevisiae]
>gi|287608|dbj|BAA01637.1| (D10865) ORF1 [Saccharomyces
cerevisiae] >gi|603420|gb|AAB64706.1| (U18922) Dmc1p:
DNA repair protein [Saccharomyces cerevisiae]
>gi|446776|prf||1912300A ISC2 gene [Saccharomyces
cerevisiae]
Length = 334
Score = 276 bits (698), Expect = 3e-73
Identities = 151/324 (46%), Positives = 212/324 (64%), Gaps = 12/324 (3%)
Query: 39 KEIRTIEDLP--GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAAR 96
K I ++++L G+ + +KL+ G T+ + + L ++ G+SE KI +AA
Sbjct: 14 KNILSVDELQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAG 73
Query: 97 KAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAH 156
K +G F+ A L R+ + +STGSK LD +LGGGI T +ITEVFGEF GKTQ++H
Sbjct: 74 KIIQVG-FIPATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSH 132
Query: 157 TLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSN 216
TL V QLP E GG G V +IDTE TFRPERI++IA+ LDP+ L ++ ARA NS
Sbjct: 133 TLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSE 192
Query: 217 HQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 276
HQM LV+Q +++ + +L++VDS+ ++FR +Y GRG L+ERQQKL +HL L+
Sbjct: 193 HQMELVEQLGEEL-----SSGDYRLIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLN 247
Query: 277 RLANLYEIAVFVTNQVQARPDA----FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVA 332
RLA + +AVF+TNQVQ+ P A D +PIGGH+LAH++ R+ LRKG+G +RVA
Sbjct: 248 RLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLAHASATRILLRKGRGDERVA 307
Query: 333 RLIDAPHLPEGEAVFRITEKGIED 356
+L D+P +PE E V+ I EKGI D
Sbjct: 308 KLQDSPDMPEKECVYVIGEKGITD 331
>sp|Q06609|RA51_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|2136077|pir||I58295 RAD51
protein homolog - human >gi|285977|dbj|BAA03189.1|
(D14134) RAD51 [Homo sapiens] >gi|5733658|gb|AAD49705.1|
(AF165094) Rad51 [Homo sapiens]
>gi|7767554|gb|AAF69145.1| (AF233744) RAD51 [Homo
sapiens]
Length = 339
Score = 276 bits (698), Expect = 3e-73
Identities = 151/311 (48%), Positives = 205/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAGF T+EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMG-FTTAT 90
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +I+TGSK LDKLL GGIET +ITE+FGEF +GKTQ+ HTLAV QLP +
Sbjct: 91 EFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 150
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ ARAFN++HQ L+ QA
Sbjct: 151 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA--- 207
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ + LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + +AV +
Sbjct: 208 --SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 265
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 266 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA 325
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 326 MFAINADGVGD 336
>gi|11431556 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) [Homo sapiens]
Length = 408
Score = 276 bits (698), Expect = 3e-73
Identities = 151/311 (48%), Positives = 205/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAGF T+EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 101 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMG-FTTAT 159
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +I+TGSK LDKLL GGIET +ITE+FGEF +GKTQ+ HTLAV QLP +
Sbjct: 160 EFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 219
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ ARAFN++HQ L+ QA
Sbjct: 220 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA--- 276
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ + LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + +AV +
Sbjct: 277 --SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 334
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 335 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA 394
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 395 MFAINADGVGD 405
>gi|4506389 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) [Homo sapiens]
>gi|397827|dbj|BAA02962.1| (D13804) HsRad51 [Homo
sapiens]
Length = 339
Score = 275 bits (697), Expect = 4e-73
Identities = 151/311 (48%), Positives = 205/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAGF T+EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMG-FTTAT 90
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +I+TGSK LDKLL GGIET +ITE+FGEF +GKTQ+ HTLAV QLP +
Sbjct: 91 EFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 150
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ ARAFN++HQ L+ QA
Sbjct: 151 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA--- 207
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ + LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + +AV +
Sbjct: 208 --SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 265
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 266 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICQIYDSPCLPEAEA 325
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 326 MFAINADGVGD 336
>sp|P70099|RA51_CRIGR DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|1552258|emb|CAA69384.1|
(Y08202) rad51 [Cricetulus griseus]
Length = 339
Score = 274 bits (693), Expect = 1e-72
Identities = 150/311 (48%), Positives = 204/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAGF T+EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 32 GISANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMG-FTTAT 90
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +I+TGSK LDKLL GGIET +ITE+FGEF +GKTQ+ HTLAV QLP +
Sbjct: 91 EFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 150
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ AR FN++HQ L+ QA
Sbjct: 151 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQA--- 207
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ + LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + +AV +
Sbjct: 208 --SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 265
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 266 TNQVVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEAEA 325
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 326 MFAINADGVGD 336
>gb|AAC39117.1| (AF064516) Rad51 [Tetrahymena thermophila]
Length = 331
Score = 274 bits (693), Expect = 1e-72
Identities = 145/311 (46%), Positives = 204/311 (64%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ A +KL +AGF T+E+I+ + L ++ G++E KI+ A K F A
Sbjct: 24 GINNADVKKLIDAGFQTVESISYTAKKNLLQIKGMTEAKIDKILDVAAKLVP-NDFQTAA 82
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY KR+S+ ++TGS LDKLLGGG ET ++TE+FGEF +GKTQ+ HTL + QLP E+
Sbjct: 83 EYYVKRQSVINLTTGSTELDKLLGGGFETGSLTEIFGEFRTGKTQICHTLCITCQLPKEK 142
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ IA+ GLDP E ++++ ARAFN + Q L+ QA
Sbjct: 143 GGGEGKAMYIDTEGTFRPERLESIAERFGLDPQECMENVAYARAFNCDQQNKLLVQA--- 199
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
L + LLIVDS T+ +R++Y GRG L+ RQ L K L +L RLA+ + IAV +
Sbjct: 200 --AALMAESKYALLIVDSATALYRTDYSGRGELSVRQNHLGKFLRNLQRLADEFGIAVVI 257
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV ++ D F GD +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 258 TNQVMSQVDGAAMFAGDMKKPIGGNIMAHASTTRLYLRKGRGESRICKIYDSPCLPESEA 317
Query: 346 VFRITEKGIED 356
++ I + GIED
Sbjct: 318 IYAIGKGGIED 328
>sp|P37383|RA51_CHICK DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|479915|pir||S35642 RAD51
protein homolog - chicken >gi|299819|gb|AAB26354.1|
(S59426) Rad51 homolog [chickens, Peptide, 339 aa]
[Gallus gallus]
Length = 339
Score = 273 bits (691), Expect = 2e-72
Identities = 152/339 (44%), Positives = 217/339 (63%), Gaps = 9/339 (2%)
Query: 21 ELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEV 80
+++ E + +++++ E + + G+ +KL EAG+ T+E++A A EL +
Sbjct: 4 QVQFEASTDTSAEEESFGPEPISRLEQCGINANDVKKLEEAGYHTVESVAHAPKKELLNI 63
Query: 81 AGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAI 140
GISE A KI+ A K +G F A E+ ++R I +I+TGSK LDKLL GGIET +I
Sbjct: 64 KGISEAKADKILAEAAKLVPMG-FTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSI 122
Query: 141 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDP 200
TE+FGEF +GKTQL HTLAV QLP + GG G ++IDTE TFRPER+ +A+ GL
Sbjct: 123 TELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG 182
Query: 201 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGA 260
+VL ++ AR FN++HQ L+ QA + E LLIVDS T+ +R++Y GRG
Sbjct: 183 SDVLDNVAYARGFNTDHQTQLLYQASAMMAE-----SRYALLIVDSATALYRTDYSGRGE 237
Query: 261 LAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHSAT 317
L+ RQ LA+ L L RLA+ + +AV +TNQV A+ D F DP +PIGG+I+AH++T
Sbjct: 238 LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAST 297
Query: 318 LRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
R+YLRKG+G R+ ++ D+P LPE EA+F I G+ D
Sbjct: 298 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
>gi|6755276 Rad51 homolog (S. cerevisiae) [Mus musculus]
>gi|585772|sp|Q08297|RA51_MOUSE DNA REPAIR PROTEIN RAD51
HOMOLOG 1 >gi|477153|pir||A48221 RAD51 protein homolog -
mouse >gi|397831|dbj|BAA02961.1| (D13803) MmRad51 [Mus
musculus] >gi|407349|dbj|BAA02718.1| (D13473) Rad51
protein [Mus musculus] >gi|1093114|prf||2102359A
RAD51-like protein [Mus musculus]
Length = 339
Score = 273 bits (691), Expect = 2e-72
Identities = 149/311 (47%), Positives = 204/311 (64%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAG+ T+EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 32 GINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILTEAAKLVPMG-FTTAT 90
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +I+TGSK LDKLL GGIET +ITE+FGEF +GKTQ+ HTLAV QLP +
Sbjct: 91 EFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 150
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ AR FN++HQ L+ QA
Sbjct: 151 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQA--- 207
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ + LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + +AV +
Sbjct: 208 --SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 265
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 266 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA 325
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 326 MFAINADGVGD 336
>gb|AAB53331.1| (U94994) Dmc1 homolog [Bombyx mori]
Length = 341
Score = 272 bits (688), Expect = 5e-72
Identities = 146/311 (46%), Positives = 204/311 (64%), Gaps = 7/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ A +KL+ AG T++ I +++ +L + G S+ KI +A +K LG FM A
Sbjct: 32 GINVADIKKLKAAGICTIKGIQMSTKKKLTNIKGFSDTKVEKIKEACQKVVTLG-FMTAL 90
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E +R+ + +ISTGS LDKLL GGIE+ AITEVFGEF +GKTQL+HTL V Q+P +
Sbjct: 91 EVSDRRKQVFKISTGSTELDKLLAGGIESMAITEVFGEFRTGKTQLSHTLCVTTQIPNSK 150
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G G V+++DTE+TFRP+R+R IA LD + VL ++ ARA+ S HQ L+ K
Sbjct: 151 GYQGGKVMFLDTEHTFRPDRLRPIADRFNLDQNAVLDNVLYARAYTSEHQAELLDYVAAK 210
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
E KLLI+DS+ + FR ++ GRG LA+RQQKLA+ L+ L +++ Y +AVF+
Sbjct: 211 FHEEAGV---FKLLIIDSIMALFRVDFSGRGELADRQQKLAQVLSRLQKISEEYNVAVFI 267
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQ+ A P A F DP +PIGG+ILAH++T R+ LRKG+G R+A++ D+P LPE EA
Sbjct: 268 TNQMTADPGATLTFQADPKKPIGGNILAHASTTRISLRKGRGDNRIAKIYDSPDLPESEA 327
Query: 346 VFRITEKGIED 356
F IT G+ D
Sbjct: 328 TFAITNGGVAD 338
>sp|O77507|RA51_RABIT DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|3387769|gb|AAC28561.1|
(AF017729) Rad51 [Oryctolagus cuniculus]
Length = 339
Score = 271 bits (686), Expect = 8e-72
Identities = 149/311 (47%), Positives = 202/311 (64%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL EAGF T EA+A A EL + GISE A KI+ A K +G F A
Sbjct: 32 GINANDVKKLEEAGFHTEEAVAYAPKKELINIKGISEAKADKILTEAAKLVPMG-FTTAT 90
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E+ ++R I +I+TGSK LDKLL GGIET +ITE+FGEF +GKTQ+ HTLAV QLP +
Sbjct: 91 EFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 150
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ GL +VL ++ AR FN++HQ L+ QA
Sbjct: 151 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQA--- 207
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ + LLIVDS T+ +R++Y GRG L+ RQ LA+ L L RLA+ + + V +
Sbjct: 208 --SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVTVVI 265
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F DP +PIGG+I+AH++T R+YLRKG+G R+ ++ D+P LPE EA
Sbjct: 266 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA 325
Query: 346 VFRITEKGIED 356
+F I G+ D
Sbjct: 326 MFAINADGVGD 336
>gb|AAD51713.1|AF174136_1 (AF174136) RAD51 [Trypanosoma brucei]
Length = 373
Score = 270 bits (684), Expect = 1e-71
Identities = 155/352 (44%), Positives = 217/352 (61%), Gaps = 15/352 (4%)
Query: 10 DPAVVEIND-VDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEA 68
D AV +ND E++ +VG+ + + I + GV A +KL E GF T+E+
Sbjct: 29 DAAVDAVNDNTQEMQQQVGDAAGGPSFR----VLQIMENYGVASADIKKLMECGFLTVES 84
Query: 69 IAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLD 128
+A A + V GISE A KI+ K +G F RA + ++R+ ++TGS+ +D
Sbjct: 85 VAYAPKKSILAVKGISEAKAEKIMAECCKLTPMG-FTRATVFQEQRKETIMVTTGSREVD 143
Query: 129 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 188
KLLGGGIE +ITE+FGEF +GKTQL HTL V QLP +GG G ++IDTE TFRPER
Sbjct: 144 KLLGGGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQGGGEGMALYIDTEGTFRPER 203
Query: 189 IREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLT 248
+ +A+ LDP+ VL+++ ARA+N++HQ L+ QA + E V +++VDS T
Sbjct: 204 LVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATMAE-----HRVAIIVVDSAT 258
Query: 249 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPD----AFFGDPT 304
+ +R++Y GRG LA RQ L K L L LAN Y +AV VTNQV A D F D
Sbjct: 259 ALYRTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVVANVDGAAPTFQADSK 318
Query: 305 RPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+PIGGHI+AH++T R+ LRKG+G +R+ ++ D+P L E EA+F I E G+ D
Sbjct: 319 KPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAIFGIYENGVGD 370
>gb|AAC16334.1| (AF062379) Rad51 homolog [Leishmania major]
Length = 377
Score = 269 bits (681), Expect = 3e-71
Identities = 156/354 (44%), Positives = 214/354 (60%), Gaps = 12/354 (3%)
Query: 9 SDPAVVEINDVDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAE--KLREAGFDTL 66
S P V N+ E + + ++ T + R I+ L G A+++ KL E GF T+
Sbjct: 27 SQPQEVLQNEEQEPQQQQQQQSTDMAEPNASGFRVIQILENYGVASSDIKKLMECGFYTV 86
Query: 67 EAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKS 126
E+ A A + V GISE A KI+ K +G F A Y + R+ I ++TGS+
Sbjct: 87 ESAAYAPKKAILAVKGISENKAEKIMAECAKLVPMG-FTSAVAYHEARKEIIMVTTGSRE 145
Query: 127 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 186
+DKLLGGGIET +ITE+FGEF +GKTQL HTL V QLP +GG G ++IDTE TFRP
Sbjct: 146 VDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGGAEGMALYIDTEGTFRP 205
Query: 187 ERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDS 246
ER+ +A+ LDP++VL ++ ARAFN++HQ L+ QA + E L+IVDS
Sbjct: 206 ERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLLQASAMMAE-----NRFALIIVDS 260
Query: 247 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA----FFGD 302
T+ +R++Y GR LA RQ L K L LH LA Y +AV VTNQV A D F D
Sbjct: 261 ATALYRTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVANVDGSAQMFQAD 320
Query: 303 PTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+PIGGHI+AH++T R+ LRKG+G +R+ ++ D+P L E EA+F I + G+ D
Sbjct: 321 SKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAEAEAIFGIYDDGVGD 374
>sp|Q99133|RA51_USTMA DNA REPAIR PROTEIN RAD51 >gi|1480734|gb|AAC61878.1| (U62484) Rad51
[Ustilago maydis]
Length = 339
Score = 269 bits (680), Expect = 4e-71
Identities = 156/356 (43%), Positives = 227/356 (62%), Gaps = 23/356 (6%)
Query: 4 MGKKSSDPAVVEINDVDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGF 63
M + + DPA + +D+ E G SK +E+ G+ + +KL E+G+
Sbjct: 1 MSQNAQDPAQIGEDDMGEA---FGPLPVSK----------LEEF-GISSSDCKKLAESGY 46
Query: 64 DTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTG 123
+T+E+IA +L V G+SE A KI+ A + +G F A E+ +R + I+TG
Sbjct: 47 NTVESIAFTPKKQLLLVKGVSEAKADKILAEAARLVPMG-FTTATEFHARRNELISITTG 105
Query: 124 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 183
SK+LD +LGGG+ET +ITE++GEF +GK+QL HTLAV QLP + GG G ++IDTENT
Sbjct: 106 SKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTENT 165
Query: 184 FRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLI 243
FRP R+ +A+ GL+ +EVL ++ ARA+N++HQ+ L+ QA + E LLI
Sbjct: 166 FRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAE-----SRFSLLI 220
Query: 244 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPD---AFF 300
VDSLTS +R+++ GRG L+ RQ LAK L L RLA+ + +AV +TNQV A+ D AF
Sbjct: 221 VDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQVDGATAFT 280
Query: 301 GDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
D +PIGG+I+AH++T R+ LRKG+G +R+ R+ D+P LPE +AVF I +GI D
Sbjct: 281 ADAKKPIGGNIVAHASTTRLSLRKGRGNQRICRIADSPCLPEADAVFAIGPEGIID 336
>gi|6320942 RecA homolog; Rad51p colocalizes to ~ 65 spots with Dmc1p prior to
synapsis (independently of ZIP1 and DMC1), and interacts
with Rad52p and Rad55p; human Rad51p homolog interacts
with Brca2 protein which has been implicated in causing
breast cancer; Ra> >gi|131783|sp|P25454|RA51_YEAST DNA
REPAIR PROTEIN RAD51 >gi|322955|pir||A44348 RAD51
protein - yeast (Saccharomyces cerevisiae)
>gi|4275|emb|CAA45563.1| (X64270) similarities to
procaryotic RecA [Saccharomyces cerevisiae]
>gi|172339|gb|AAA34948.1| (M88470) RAD51 protein
[Saccharomyces cerevisiae] >gi|218469|dbj|BAA00913.1|
(D10023) Rad51 protein [Saccharomyces cerevisiae]
>gi|603333|gb|AAB64650.1| (U18839) Rad51p: RecA-like
protein [Saccharomyces cerevisiae]
Length = 400
Score = 268 bits (679), Expect = 5e-71
Identities = 144/311 (46%), Positives = 208/311 (66%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ A +KLRE+G T EA+A A +L E+ GISE A K++ A + +G AD
Sbjct: 90 GITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAAD 149
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
++++ E I ++TGSK+LD LLGGG+ET +ITE+FGEF +GK+QL HTLAV Q+P +
Sbjct: 150 FHMRRSELIC-LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDI 208
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRP R+ IA+ GLDPD+ L ++ ARA+N++HQ+ L+ A
Sbjct: 209 GGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQM 268
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E L++VDS+ + +R+++ GRG L+ RQ LAK + L RLA+ + +AV V
Sbjct: 269 MSE-----SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV 323
Query: 289 TNQVQARPD---AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D AF DP +PIGG+I+AHS+T R+ +KGKG +R+ +++D+P LPE E
Sbjct: 324 TNQVVAQVDGGMAFNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAEC 383
Query: 346 VFRITEKGIED 356
VF I E G+ D
Sbjct: 384 VFAIYEDGVGD 394
>sp|Q39009|DMC1_ARATH MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG >gi|1076395|pir||JC4092
DMC1/LIM15 homolog - Arabidopsis thaliana
>gi|871832|dbj|BAA08255.1| (D45415) recA-like protein
[Arabidopsis thaliana]
Length = 342
Score = 268 bits (679), Expect = 5e-71
Identities = 149/310 (48%), Positives = 200/310 (64%), Gaps = 10/310 (3%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL+EAG T + + + L + G+SE KI +AA K N G +M
Sbjct: 38 GINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFG-YMTGS 96
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ L KR+ + +I+TG ++LD LLGGGIET AITE FGEF SGKTQLAHTL V QLP
Sbjct: 97 DALIKRKLVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNM 156
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K
Sbjct: 157 KGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 216
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E +P ++LIVDS+ + FR ++ GRG LA+RQQKLA+ L+ L ++A + +AV++
Sbjct: 217 MSE-----EPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYM 271
Query: 289 TNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV A P F DP +P GGH+LAH+AT+R+ RKGKG RV ++ DAP+L EA
Sbjct: 272 TNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNL--AEAS 329
Query: 347 FRITEKGIED 356
F+IT+ GI D
Sbjct: 330 FQITQGGIAD 339
>sp|P50265|DLH1_CANAL MEIOTIC RECOMBINATION PROTEIN DLH1 (DMC1 HOMOLOG)
>gi|2131137|pir||S70390 DMC1/LIM15 homolog 1 - yeast
(Candida albicans) >gi|1145716|gb|AAC49400.1| (U39808)
Dlh1p [Candida albicans]
Length = 324
Score = 267 bits (675), Expect = 2e-70
Identities = 151/325 (46%), Positives = 209/325 (63%), Gaps = 12/325 (3%)
Query: 38 EKEIRTIEDLP--GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAA 95
E I +I+ L G+ KL+ AG ++ ++ + L ++ G+SE KI +AA
Sbjct: 4 EDSIISIDSLQDQGINAGDINKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEAA 63
Query: 96 RKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 155
K G F+ A + R + I+TGSK D++LGGGI++ +ITEVFGEF GKTQL
Sbjct: 64 GKIKKYG-FLPATIVAESRTKVFHITTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLC 122
Query: 156 HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNS 215
HTL V QLP + GG G V +IDTE TFRP+RIR IA+ G+D D L++I ARA NS
Sbjct: 123 HTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRIRSIAERYGVDADICLENISYARALNS 182
Query: 216 NHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 275
HQ+ LV+Q +++ E +LLIVDS+ + FR +Y GRG L ERQQKL +HL++L
Sbjct: 183 EHQIELVEQLGNELAE-----GTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNL 237
Query: 276 HRLANLYEIAVFVTNQVQARPDA----FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRV 331
R+A Y IAVF+TNQVQ+ P A D +P+GGH+LAH++ R+ LRKG+G +RV
Sbjct: 238 TRVAEDYNIAVFLTNQVQSDPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERV 297
Query: 332 ARLIDAPHLPEGEAVFRITEKGIED 356
A+L D+P++PE E V+ I E GI+D
Sbjct: 298 AKLQDSPNMPEKECVYVIGEGGIKD 322
>gb|AAB53330.1| (U94993) Rad51 homolog [Bombyx mori]
Length = 338
Score = 266 bits (673), Expect = 3e-70
Identities = 154/341 (45%), Positives = 215/341 (62%), Gaps = 20/341 (5%)
Query: 19 VDELELEVGEEVTSKKKKKEKEIRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELK 78
VDE E G ++ SK + G+ +KL EAG+ T+E++A A L
Sbjct: 12 VDEDADECGPQLISKLEGN-----------GITSGDIKKLEEAGYHTVESVAYAPKKWLI 60
Query: 79 EVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQ 138
+ GISE A KI+ A K +G F A E+ +KR I +++TGSK LD+LLGGGIET
Sbjct: 61 TIKGISEAKADKILAEASKLVPMG-FTTATEFHQKRAEIIQLTTGSKELDRLLGGGIETG 119
Query: 139 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGL 198
+ITE+FGEF +GKTQL HTLAV QLP E+ G G ++IDTE TFRPER+ +A+ G+
Sbjct: 120 SITEIFGEFRTGKTQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGM 179
Query: 199 DPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGR 258
+ VL ++ ARA+N++HQ L+ QA + E L+IVDS T+ +R++Y GR
Sbjct: 180 EGAAVLDNVAYARAYNTDHQTQLLVQACAMMAE-----SRYSLIIVDSATALYRTDYSGR 234
Query: 259 GALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHS 315
G L RQ L + + L RLA+ + +AV +TNQV A+ D+ F D +PIGGHI+AH+
Sbjct: 235 GELNSRQLHLGRFMRMLLRLADEFGVAVIITNQVVAQVDSVGVFNADTKKPIGGHIIAHA 294
Query: 316 ATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+T R+YLRKG+G RV ++ D+P LPE EA+F I+ +GI D
Sbjct: 295 STTRLYLRKGRGDNRVCKIYDSPCLPETEAMFAISAEGITD 335
>emb|CAA73605.1| (Y13144) Rad51 homologue [Trypanosoma brucei]
Length = 313
Score = 265 bits (670), Expect = 6e-70
Identities = 145/312 (46%), Positives = 200/312 (63%), Gaps = 10/312 (3%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
GV A +KL E GF T+E++A A + V GISE A KI+ + +G F RA
Sbjct: 5 GVASADIKKLMECGFLTVESVAYAPKKSILAVKGISEAKAEKIMAECCRLTPMG-FTRAT 63
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ ++R+ ++TGS+ +DKLLGGGIE +ITE+FGEF +GKTQL HTL V QLP +
Sbjct: 64 VFQEQRKETIMVTTGSREVDKLLGGGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQ 123
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRPER+ +A+ LDP+ VL+++ ARA+N++HQ L+ QA
Sbjct: 124 GGGEGMALYIDTEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASAT 183
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E V +++VDS T+ +R++Y GRG LA RQ L K L L LAN Y +AV V
Sbjct: 184 MAE-----HRVAIIVVDSATALYRTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVV 238
Query: 289 TNQVQARPD----AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
TNQV A D F D +PIGGHI+AH++T R+ LRKG+G +R+ ++ D+P L E E
Sbjct: 239 TNQVVANVDGAAPTFQADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESE 298
Query: 345 AVFRITEKGIED 356
A+F I E G+ D
Sbjct: 299 AIFGIYENGVGD 310
>sp|P36601|RA51_SCHPO DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|629906|pir||S42107 RAD51
protein homolog - fission yeast (Schizosaccharomyces
pombe) >gi|297522|emb|CAA80399.1| (Z22691) Rec A-like
Protein [Schizosaccharomyces pombe]
>gi|395378|emb|CAA80879.1| (Z24756) Rad51-like protein
[Schizosaccharomyces pombe]
Length = 365
Score = 263 bits (666), Expect = 2e-69
Identities = 143/310 (46%), Positives = 206/310 (66%), Gaps = 8/310 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ + +K+ EAG+ T+E+IA +L + GISE A K++ A K +G F A
Sbjct: 54 GITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKADKLLGEASKLVPMG-FTTAT 112
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +R + I+TGSK LD LL GG+ET +ITE+FGEF +GK+Q+ HTLAV QLP +
Sbjct: 113 EYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDM 172
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRP R+ +A GL+ +EVL ++ ARA+N++HQ+ L+QQA +
Sbjct: 173 GGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANM 232
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E LL+VDS T+ +R+++ GRG L+ RQ LA+ + L RLA+ + IAV +
Sbjct: 233 MSE-----SRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVI 287
Query: 289 TNQVQARPD--AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV A+ D +F DP +PIGG+ILAHS+T R+ LRKG+G +R+ ++ D+P LPE EA+
Sbjct: 288 TNQVVAQVDGISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI 347
Query: 347 FRITEKGIED 356
F I G+ D
Sbjct: 348 FAINSDGVGD 357
>emb|CAA80878.1| (Z24756) RecA-like protein [Schizosaccharomyces pombe]
Length = 358
Score = 263 bits (666), Expect = 2e-69
Identities = 143/310 (46%), Positives = 206/310 (66%), Gaps = 8/310 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ + +K+ EAG+ T+E+IA +L + GISE A K++ A K +G F A
Sbjct: 47 GITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKADKLLGEASKLVPMG-FTTAT 105
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +R + I+TGSK LD LL GG+ET +ITE+FGEF +GK+Q+ HTLAV QLP +
Sbjct: 106 EYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDM 165
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRP R+ +A GL+ +EVL ++ ARA+N++HQ+ L+QQA +
Sbjct: 166 GGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANM 225
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E LL+VDS T+ +R+++ GRG L+ RQ LA+ + L RLA+ + IAV +
Sbjct: 226 MSE-----SRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVI 280
Query: 289 TNQVQARPD--AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV A+ D +F DP +PIGG+ILAHS+T R+ LRKG+G +R+ ++ D+P LPE EA+
Sbjct: 281 TNQVVAQVDGISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI 340
Query: 347 FRITEKGIED 356
F I G+ D
Sbjct: 341 FAINSDGVGD 350
>pir||S37672 RAD51 protein - fission yeast (Schizosaccharomyces pombe)
>gi|397843|dbj|BAA02963.1| (D13805) SpRad51
[Schizosaccharomyces pombe] >gi|7708593|emb|CAB90141.1|
(AL355012) dna repair protein rad51 homolog
[Schizosaccharomyces pombe]
Length = 365
Score = 263 bits (666), Expect = 2e-69
Identities = 143/310 (46%), Positives = 206/310 (66%), Gaps = 8/310 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ + +K+ EAG+ T+E+IA +L + GISE A K++ A K +G F A
Sbjct: 54 GITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKADKLLGEASKLVPMG-FTTAT 112
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +R + I+TGSK LD LL GG+ET +ITE+FGEF +GK+Q+ HTLAV QLP +
Sbjct: 113 EYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDM 172
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRP R+ +A GL+ +EVL ++ ARA+N++HQ+ L+QQA +
Sbjct: 173 GGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANM 232
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E LL+VDS T+ +R+++ GRG L+ RQ LA+ + L RLA+ + IAV +
Sbjct: 233 MSE-----SRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVI 287
Query: 289 TNQVQARPD--AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV A+ D +F DP +PIGG+ILAHS+T R+ LRKG+G +R+ ++ D+P LPE EA+
Sbjct: 288 TNQVVAQVDGISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI 347
Query: 347 FRITEKGIED 356
F I G+ D
Sbjct: 348 FAINSDGVGD 357
>dbj|BAA89533.1| (AB036801) LIM15/DMC1 homolog [Coprinus cinereus]
Length = 345
Score = 263 bits (666), Expect = 2e-69
Identities = 142/318 (44%), Positives = 208/318 (64%), Gaps = 9/318 (2%)
Query: 43 TIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLG 102
++++L G + + A +T+ + + + +L ++ G+SE KI +AA+K
Sbjct: 32 SVDELQQHGINVQDITKSAAINTVSGVIMTTRRQLLKIKGMSEAKVEKIKEAAQKIHG-S 90
Query: 103 TFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 162
+F E KR+ + ISTGSK +D +LGGG+ +Q+ITEV+GE+ +GKTQLAHT++V+
Sbjct: 91 SFATGVEIQDKRKRVLVISTGSKLVDGILGGGVMSQSITEVYGEYRTGKTQLAHTMSVVA 150
Query: 163 QLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLV 222
QLPPE GG G V +IDTE TFRP+RIR IA G+D L++I ARAFNS HQM L+
Sbjct: 151 QLPPEYGGAAGKVAYIDTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELI 210
Query: 223 QQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY 282
+ + E DK +LLI+DS+ + FR +Y GRG L+ERQQKLA+ L+ L +L+ +
Sbjct: 211 NECSARFAE----DKDFRLLIIDSIMALFRVDYSGRGELSERQQKLAQMLSKLTKLSEEF 266
Query: 283 EIAVFVTNQVQARPDAFF----GDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAP 338
IAV +TNQVQ+ P A G +PIGGHIL+H++ R++LRKG+ +RVA+L+D+P
Sbjct: 267 NIAVLMTNQVQSDPGATMTFVAGGALKPIGGHILSHASATRIFLRKGRAEERVAKLVDSP 326
Query: 339 HLPEGEAVFRITEKGIED 356
PE EA +++ E G D
Sbjct: 327 DRPESEASYKLDEGGWAD 344
>pir||S36159 RAD51 protein homolog - fission yeast (Schizosaccharomyces pombe)
Length = 365
Score = 262 bits (663), Expect = 4e-69
Identities = 142/310 (45%), Positives = 206/310 (65%), Gaps = 8/310 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ + +K+ EAG+ T+E+IA +L + GISE A K++ A K +G F A
Sbjct: 54 GITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKADKLLGEASKLVPMG-FTTAT 112
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
EY +R + I+TGSK LD LL GG+ET +ITE+FGEF +GK+Q+ HTLAV QLP +
Sbjct: 113 EYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDM 172
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRP R+ +A GL+ +EVL ++ ARA+N++HQ+ L+QQA +
Sbjct: 173 GGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANM 232
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E LL+VDS T+ +R+++ GRG L+ RQ LA+ + + RLA+ + IAV +
Sbjct: 233 MSE-----SRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTVQRLADEFGIAVVI 287
Query: 289 TNQVQARPD--AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 346
TNQV A+ D +F DP +PIGG+ILAHS+T R+ LRKG+G +R+ ++ D+P LPE EA+
Sbjct: 288 TNQVVAQVDGISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI 347
Query: 347 FRITEKGIED 356
F I G+ D
Sbjct: 348 FAINSDGVGD 357
>pir||T39157 meiotic recombination protein - fission yeast (Schizosaccharomyces
pombe) >gi|2887332|emb|CAA17024.1| (AL021817) meiotic
recombination protein [Schizosaccharomyces pombe]
>gi|3176384|dbj|BAA28671.1| (AB008545) dmc1
[Schizosaccharomyces pombe]
Length = 332
Score = 260 bits (657), Expect = 2e-68
Identities = 145/334 (43%), Positives = 211/334 (62%), Gaps = 10/334 (2%)
Query: 28 EEVTSKKKKKEKEIRTIEDLP--GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISE 85
EE ++ IEDL G+G KL++AG T++ + +++ L ++ G SE
Sbjct: 2 EEFAEGNDDEQMIFSDIEDLTAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSE 61
Query: 86 GAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFG 145
K+ +AA K F A E + R+ + ISTGS++L+ +LGGGI++ +ITEVFG
Sbjct: 62 AKVDKLKEAASKMCP-ANFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFG 120
Query: 146 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLK 205
EF GKTQ++HTL V QLP + GG G V +IDTE TFRP+RI+ IA+ G+D D+ ++
Sbjct: 121 EFRCGKTQMSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAME 180
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I V+RA+NS QM + K+ + D +LLIVDS+ + FR +Y GRG L+ERQ
Sbjct: 181 NIIVSRAYNSEQQMEYI----TKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQ 236
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYL 322
QKL LA L+ ++ + +AVFVTNQVQA P A F + +P+GGH++AH++ R+ L
Sbjct: 237 QKLNIMLARLNHISEEFNVAVFVTNQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLL 296
Query: 323 RKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
RKG+G +RVA+L D+P +PE E + IT GI D
Sbjct: 297 RKGRGEERVAKLNDSPDMPEAECSYVITPGGIAD 330
>pir||S70629 Rad51 homolog mei-3 - Neurospora crassa >gi|2182133|dbj|BAA20366.1|
(D29638) MEI3 [Neurospora crassa]
Length = 353
Score = 259 bits (656), Expect = 3e-68
Identities = 142/321 (44%), Positives = 208/321 (64%), Gaps = 11/321 (3%)
Query: 41 IRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 100
+ +E + G+ + + + GF+T+E++A L+++ GISE A KI+ A K
Sbjct: 28 LSALEGVAGLTKRDIQLIVDGGFNTVESVAYTPRRVLEQIKGISEQKAGKILAEASKLVP 87
Query: 101 LGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 160
+G F A E ++R + I+TGSK+LD LL GGIET ++TE+FGEF +GK+Q+ HTLAV
Sbjct: 88 MG-FTTATEMHQRRSELISITTGSKNLDTLLAGGIETGSVTEIFGEFRTGKSQICHTLAV 146
Query: 161 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQML 220
QLP + GG G ++IDTE TFRP R+ +A GL +EVL ++ ARA+NS+HQ+
Sbjct: 147 TCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQ 206
Query: 221 LVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN 280
L+ QA + + LLIVDS TS +R++++GRG L+ RQ LAK + L RLA+
Sbjct: 207 LLNQA-----AAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQTHLAKFMRTLQRLAD 261
Query: 281 LYEIAVFVTNQVQAR----PDAFFG-DPTRPIGGHILAHSATLRVYLRKGKGGKRVARLI 335
+ IAV +TNQV A+ P A F DP +PIGG+I+AH++T R+ L+KG+G R+A++
Sbjct: 262 EFGIAVVITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIY 321
Query: 336 DAPHLPEGEAVFRITEKGIED 356
D+P LPE + +F I E GI D
Sbjct: 322 DSPCLPESDCLFAINEDGIGD 342
>sp|Q27297|RA51_DROME DNA REPAIR PROTEIN RAD51 HOMOLOG (RECA PROTEIN HOMOLOG)
>gi|693878|dbj|BAA04580.1| (D17726) Rad51 [Drosophila
melanogaster] >gi|762789|gb|AAA64873.1| (L41342) RAD51
homolog; putative [Drosophila melanogaster]
>gi|807700|dbj|BAA07039.1| (D37788) RecA protein
homologue [Drosophila melanogaster]
>gi|7301897|gb|AAF57005.1| (AE003772) Rad51 gene product
[Drosophila melanogaster]
Length = 336
Score = 257 bits (650), Expect = 1e-67
Identities = 155/338 (45%), Positives = 210/338 (61%), Gaps = 16/338 (4%)
Query: 28 EEVTSKKKKKEKEIR----TIEDLPGVGPATAEK---LREAGFDTLEAIAVASPIELKEV 80
E++T+ + ++E+E ++ L G G TA+ L++A T+E++A A+ +L +
Sbjct: 2 EKLTNVQAQQEEEEEEGPLSVTKLIG-GSITAKDIKLLQQASLHTVESVANATKKQLMAI 60
Query: 81 AGISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAI 140
G+ G +II A K LG F+ A + + R + ++STGSK LDKLLGGGIET +I
Sbjct: 61 PGLGGGKVEQIITEANKLVPLG-FLSARTFYQMRADVVQLSTGSKELDKLLGGGIETGSI 119
Query: 141 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDP 200
TE+FGEF GKTQL HTLAV QLP + G G ++IDTENTFRPER+ IA+ L+
Sbjct: 120 TEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNE 179
Query: 201 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGA 260
EVL ++ RA NS+ Q L+Q A + E LLIVDS + +RS+YIGRG
Sbjct: 180 SEVLDNVAFTRAHNSDQQTKLIQMAAGMLFE-----SRYALLIVDSAMALYRSDYIGRGE 234
Query: 261 LAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFG--DPTRPIGGHILAHSATL 318
LA RQ L L L RLA+ + +AV +TNQV A D G D +PIGGHI+AHS+T
Sbjct: 235 LAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTT 294
Query: 319 RVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
R+YLRKGKG R+ ++ D+P LPE EA+F I GI D
Sbjct: 295 RLYLRKGKGETRICKIYDSPCLPESEAMFAILPDGIGD 332
>emb|CAB02454.1| (Z80341) uvsC [Aspergillus nidulellus]
Length = 348
Score = 257 bits (650), Expect = 1e-67
Identities = 145/321 (45%), Positives = 206/321 (64%), Gaps = 11/321 (3%)
Query: 41 IRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 100
+ ++E + G+ + +AG+ T+E+IA L+++ GISE A KI+ A K
Sbjct: 25 LSSLEGMAGLTSRDIKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKILVEAAKLVP 84
Query: 101 LGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 160
+G F A E +R + I+TGSK LD LLGGGIET +ITE+FGEF +GK+Q+ HTLAV
Sbjct: 85 MG-FTTATEMHARRSELISITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAV 143
Query: 161 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQML 220
QLP + GG G ++IDTE TFRP R+ +A+ GL +EVL ++ ARA+NS+HQ+
Sbjct: 144 TCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQ 203
Query: 221 LVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN 280
L+ QA + E LL+VDS TS +R+++ GRG L+ RQ LAK + L RLA+
Sbjct: 204 LLNQASQMMCE-----TRFSLLVVDSATSLYRTDFNGRGELSTRQTHLAKFMRTLQRLAD 258
Query: 281 LYEIAVFVTNQVQAR----PDAFFG-DPTRPIGGHILAHSATLRVYLRKGKGGKRVARLI 335
+ IAV +TNQV A+ P A F DP +PIGG+I+AH++T R+ L+KG+G RV ++
Sbjct: 259 EFGIAVVITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIY 318
Query: 336 DAPHLPEGEAVFRITEKGIED 356
D+P LPE + +F I E GI D
Sbjct: 319 DSPCLPESDCLFAINEDGIGD 339
>gb|AAB39323.2| (U63728) ARECA [Aspergillus nidulans]
Length = 344
Score = 257 bits (650), Expect = 1e-67
Identities = 145/321 (45%), Positives = 206/321 (64%), Gaps = 11/321 (3%)
Query: 41 IRTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 100
+ ++E + G+ + +AG+ T+E+IA L+++ GISE A KI+ A K
Sbjct: 21 LSSLEGMAGLTSRDIKLFVDAGYHTVESIAYTPKRLLEQIKGISEQKATKILVEAAKLVP 80
Query: 101 LGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 160
+G F A E +R + I+TGSK LD LLGGGIET +ITE+FGEF +GK+Q+ HTLAV
Sbjct: 81 MG-FTTATEMHARRSELISITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAV 139
Query: 161 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQML 220
QLP + GG G ++IDTE TFRP R+ +A+ GL +EVL ++ ARA+NS+HQ+
Sbjct: 140 TCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQ 199
Query: 221 LVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN 280
L+ QA + E LL+VDS TS +R+++ GRG L+ RQ LAK + L RLA+
Sbjct: 200 LLNQASQMMCE-----TRFSLLVVDSATSLYRTDFNGRGELSTRQTHLAKFMRTLQRLAD 254
Query: 281 LYEIAVFVTNQVQAR----PDAFFG-DPTRPIGGHILAHSATLRVYLRKGKGGKRVARLI 335
+ IAV +TNQV A+ P A F DP +PIGG+I+AH++T R+ L+KG+G RV ++
Sbjct: 255 EFGIAVVITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIY 314
Query: 336 DAPHLPEGEAVFRITEKGIED 356
D+P LPE + +F I E GI D
Sbjct: 315 DSPCLPESDCLFAINEDGIGD 335
>sp|O42634|DMC1_SCHPO MEIOTIC RECOMBINATION PROTEIN DMC1 >gi|11279454|pir||T51302 meiotic
recombination protein Dmc1 - fission yeast
(Schizosaccharomyces pombe) >gi|2696694|dbj|BAA23984.1|
(D64035) SpDmc1 [Schizosaccharomyces pombe]
Length = 336
Score = 257 bits (649), Expect = 2e-67
Identities = 139/313 (44%), Positives = 204/313 (64%), Gaps = 8/313 (2%)
Query: 47 LPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMR 106
L G+G KL++AG T++ + +++ L ++ G SE K+ +AA K F
Sbjct: 27 LKGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVDKLKEAASKMCP-ANFST 85
Query: 107 ADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 166
A E + R+ + ISTGS++L+ +LGGGI++ +ITEVFGEF GKTQ++HTL V QLP
Sbjct: 86 AMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPR 145
Query: 167 EEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAE 226
+ GG G V +IDTE TFRP+RI+ IA+ G+D D+ +++I V+RA+NS QM +
Sbjct: 146 DMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYI---- 201
Query: 227 DKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAV 286
K+ + D +LLIVDS+ + FR +Y GRG L+ERQ+KL LA L+ ++ + +AV
Sbjct: 202 TKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQKKLNIMLARLNHISEEFNVAV 261
Query: 287 FVTNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEG 343
FVTNQVQA P A F + +P+GGH++AH++ R+ LRKG+G +RVA+L D+P +PE
Sbjct: 262 FVTNQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEA 321
Query: 344 EAVFRITEKGIED 356
E + IT GI D
Sbjct: 322 ECSYVITPGGIAD 334
>gb|AAC23703.1| (U21905) Rah1 [Coprinus cinereus]
Length = 343
Score = 256 bits (647), Expect = 3e-67
Identities = 144/312 (46%), Positives = 197/312 (62%), Gaps = 10/312 (3%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL +AG +T+EA+A L + GISE A KI+ A+K LG F A
Sbjct: 33 GIHANDIKKLADAGLNTVEAVAFTPKKNLLAIRGISEQKADKILAEAQKIVPLG-FQSAT 91
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
E +R + I+TGSK LD LLGGGIET AITE+FGEF +GK+Q+ HTLAV QLP
Sbjct: 92 EVHARRSELVHITTGSKQLDALLGGGIETGAITELFGEFRTGKSQICHTLAVTCQLPVSM 151
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++IDTE TFRP R+ +A+ GL+ +EVL ++ ARA+N++HQ L+ A
Sbjct: 152 GGGEGKCLYIDTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQQALLTSA--- 208
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
L ++ LLIVDS T+ +R+++ GRG L+ RQ L K L L RLA+ + IAV V
Sbjct: 209 --SALMSESRFCLLIVDSCTALYRTDFSGRGELSSRQTHLGKFLRTLQRLADEFGIAVVV 266
Query: 289 TNQVQARPDA----FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
TNQV + PDA + G+ +PIGG+I+AH++T R+ L+KG+G R ++ D+P LPE E
Sbjct: 267 TNQVMSTPDAAPGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGNTRACKIYDSPCLPESE 326
Query: 345 AVFRITEKGIED 356
F I GI D
Sbjct: 327 TTFAILPGGIGD 338
>dbj|BAA92869.1| (AB040404) Pprad51 [Penicillium paxilli]
Length = 347
Score = 254 bits (643), Expect = 9e-67
Identities = 145/318 (45%), Positives = 204/318 (63%), Gaps = 14/318 (4%)
Query: 47 LPGVGPATAEKLR---EAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT 103
L G TA ++ +AG+ T+E++A L+++ GISE A K++ A + +G
Sbjct: 28 LEGTAGLTARDIKLFVDAGYYTVESVAYTPKRVLEQIKGISEQKATKVLVEAARLVPMG- 86
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
F A E KR + I+TGSK LD LLGGGIET +ITE+FGEF +GK+Q+ HTLAV Q
Sbjct: 87 FTTATEMHAKRSELISITTGSKRLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQ 146
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQ 223
LP + GG G ++IDTE TFRP R+ +A+ GL +EVL ++ ARA+NS+HQ+ L+
Sbjct: 147 LPFDMGGGEGKCLYIDTEGTFRPVRLLAVAQRFGLVGEEVLDNVAYARAYNSDHQLQLLN 206
Query: 224 QAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYE 283
QA + E LLIVDS T+ +R+++ GRG L+ RQ LAK L L RLA+ +
Sbjct: 207 QASQMMCE-----TRFSLLIVDSATALYRTDFNGRGELSSRQTHLAKFLRTLQRLADEFG 261
Query: 284 IAVFVTNQVQAR----PDAFFG-DPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAP 338
+AV +TNQV A+ P A F DP +PIGG+I+AH++T R+ L+KG+G RV ++ D+P
Sbjct: 262 VAVVITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSP 321
Query: 339 HLPEGEAVFRITEKGIED 356
LPE + +F I E GI D
Sbjct: 322 CLPESDCLFAINEDGIGD 339
>gb|AAD32030.1|AF079429_1 (AF079429) RAD51 homolog RAD51B [Zea mays]
Length = 340
Score = 253 bits (640), Expect = 2e-66
Identities = 136/311 (43%), Positives = 207/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL++AG T+E++A + +L ++ GISE KII+AA K LG F A
Sbjct: 33 GIAALDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIEAASKLVPLG-FTSAS 91
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ +R I +++TGS+ LD++L GGIET +ITE++GEF SGKTQL HTL V QLP ++
Sbjct: 92 QLHAQRLEIIQLTTGSRELDQILDGGIETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQ 151
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++ID E TFRP+RI +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 152 GGGEGKALYIDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASM 211
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E L++VDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +
Sbjct: 212 MVE-----TRFALMVVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 266
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F G +PIGG+I+AH++T R++LRKG+G +R+ ++I +P L E EA
Sbjct: 267 TNQVVAQVDGAAMFAGPQIKPIGGNIMAHASTTRLFLRKGRGEERICKVISSPCLAEAEA 326
Query: 346 VFRITEKGIED 356
F+I+ +G+ D
Sbjct: 327 RFQISSEGVTD 337
>gb|AAB37762.1| (U43528) RAD51 homolog AtRad51 [Arabidopsis thaliana]
>gi|1706949|gb|AAC49555.1| (U43652) AtRAD51 [Arabidopsis
thaliana] >gi|2388778|emb|CAA04529.1| (AJ001100)
Rad51-like protein [Arabidopsis thaliana]
Length = 342
Score = 252 bits (637), Expect = 4e-66
Identities = 137/311 (44%), Positives = 204/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KLR+AG T+E +A +L ++ GIS+ KI++AA K LG F A
Sbjct: 35 GIASVDVKKLRDAGLCTVEGVAYTPRKDLLQIKGISDAKVDKIVEAASKLVPLG-FTSAS 93
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ +R+ I +I++GS+ LDK+L GGIET +ITE++GEF SGKTQL HTL V QLP ++
Sbjct: 94 QLHAQRQEIIQITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQ 153
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASM 213
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E LLIVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +
Sbjct: 214 MIE-----TRFALLIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F G +PIGG+I+AH+ T R+ LRKG+ +R+ ++I +P LPE EA
Sbjct: 269 TNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPEAEA 328
Query: 346 VFRITEKGIED 356
F+I+ +G+ D
Sbjct: 329 RFQISTEGVTD 339
>gb|AAD32029.1|AF079428_1 (AF079428) RAD51 homolog RAD51A [Zea mays]
Length = 340
Score = 250 bits (631), Expect = 2e-65
Identities = 135/311 (43%), Positives = 204/311 (65%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL+++G T+EA+A +L ++ GISE A KII+AA K LG F A
Sbjct: 33 GIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEAASKIVPLG-FTSAS 91
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ +R I +++TGS+ LDK+L GGIET +ITE++GEF SGKTQL HT V QLP ++
Sbjct: 92 QLHAQRLEIIQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTPCVTCQLPLDQ 151
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 152 GGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASM 211
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E L++VDS T+ +R+++ GRG L+ RQ +AK L L +LA+ + +AV +
Sbjct: 212 MIE-----TRFALMVVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVVI 266
Query: 289 TNQVQARPDA---FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F G +PIGG+I+AH++T R+ LRKG+G +R+ ++I +P L E EA
Sbjct: 267 TNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEA 326
Query: 346 VFRITEKGIED 356
F++ +GI D
Sbjct: 327 RFQLASEGIAD 337
>sp|Q40134|RA51_LYCES DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|7448301|pir||T06365 RAD51
protein homolog - tomato >gi|1143810|gb|AAC23700.1|
(U22441) LeRAD51 [Lycopersicon esculentum]
Length = 342
Score = 249 bits (629), Expect = 4e-65
Identities = 136/311 (43%), Positives = 203/311 (64%), Gaps = 9/311 (2%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ +KL++AG T+E++ A EL ++ GISE KII+AA K LG F A
Sbjct: 35 GIAALDVKKLKDAGLCTVESVVYAPRKELLQIKGISEAKVDKIIEAASKLVPLG-FTSAS 93
Query: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168
+ +R I +I++GSK LDK+L GGIET +ITE++GEF GKTQL HTL V QLP ++
Sbjct: 94 QLHAQRLEIIQITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQ 153
Query: 169 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 228
GG G ++ID E TFRP+R+ +IA GL+ +VL+++ ARA+N++HQ L+ +A
Sbjct: 154 GGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASM 213
Query: 229 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
+ E L+IVDS T+ +R+++ GRG L+ RQ LAK L L +LA+ + +AV +
Sbjct: 214 MVE-----TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVI 268
Query: 289 TNQVQARPD---AFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEA 345
TNQV A+ D F G +PIGG+I+AH++T R+ LRKG+ +R+ +++ +P L E EA
Sbjct: 269 TNQVVAQVDGSAVFAGPQIKPIGGNIMAHASTTRLALRKGRAEERICKVVSSPCLAEAEA 328
Query: 346 VFRITEKGIED 356
F+I+ +G+ D
Sbjct: 329 RFQISVEGVTD 339
>gb|AAF74403.1|AF198107_3 (AF198107) DNA repair protein RAD51 [Giardia intestinalis]
Length = 236
Score = 233 bits (588), Expect = 2e-60
Identities = 121/238 (50%), Positives = 161/238 (66%), Gaps = 8/238 (3%)
Query: 122 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 181
+G + LLGGG+ET +ITEVFGEF +GKTQL HTLAV QLP +GG G ++IDTE
Sbjct: 1 SGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDTE 60
Query: 182 NTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKL 241
TFRPE++ IA+ GL+P + L +I VAR + Q+ + L + L
Sbjct: 61 GTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPK-----LMVENQFSL 115
Query: 242 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--- 298
+IVDSLT+ FR ++ GRG LA+RQQKL +HL+ L +LA+ + +AVFVTNQV A+ D
Sbjct: 116 VIVDSLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFVTNQVMAQVDGAAM 175
Query: 299 FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
F DP +PIGGHILAH++T R+YLRKG+G RVA++ D+P L EGEA + I +GI D
Sbjct: 176 FTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSLAEGEASYSIAAEGIID 233
>emb|CAC01068.1| (AL390935) probable DNA repair protein rad51 homolog 2 [Leishmania
major]
Length = 284
Score = 201 bits (505), Expect = 1e-50
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 9/222 (4%)
Query: 139 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGL 198
+ITE+FGEF +GKTQL HTL V QLP +GG G ++IDTE TFRPER+ +A+ L
Sbjct: 1 SITELFGEFRTGKTQLCHTLCVTCQLPISQGGAEGMALYIDTEGTFRPERLVAVAERYKL 60
Query: 199 DPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGR 258
DP++VL ++ ARAFN++HQ L+ QA + E L+IVDS T+ +R++Y GR
Sbjct: 61 DPEDVLANVACARAFNTDHQQQLLLQASAMMAE-----NRFALIIVDSATALYRTDYSGR 115
Query: 259 GALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA----FFGDPTRPIGGHILAH 314
LA RQ L K L LH LA Y +AV VTNQV A D F D +PIGGHI+AH
Sbjct: 116 NELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVANVDGSAQMFQADSKKPIGGHIMAH 175
Query: 315 SATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
++T R+ LRKG+G +R+ ++ D+P L E EA F + G+ D
Sbjct: 176 ASTTRLSLRKGRGEQRIIKVYDSPCLAEAEAXFGXYDDGVGD 217
>gb|AAG34563.1| (AF321522) recombination/repair protein [Methanosarcina barkeri]
Length = 159
Score = 185 bits (466), Expect = 5e-46
Identities = 91/153 (59%), Positives = 117/153 (75%), Gaps = 4/153 (2%)
Query: 145 GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVL 204
GEFGSGK+Q++H LAV VQLP E+GGL+ ++IDTENTFRPER+ +IA LD +E L
Sbjct: 11 GEFGSGKSQISHELAVTVQLPEEKGGLDAECVFIDTENTFRPERVEQIATGFELDTEEAL 70
Query: 205 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAER 264
+ I++ARAFNS+HQ+L+ DKI EL+ + +KL+IVDSLT+HFR+EY+GR LA R
Sbjct: 71 QRIHIARAFNSSHQILMA----DKINELIQSGTNIKLVIVDSLTAHFRAEYVGRETLATR 126
Query: 265 QQKLAKHLADLHRLANLYEIAVFVTNQVQARPD 297
QQKL +HL L +AN Y +AVFVTNQV A PD
Sbjct: 127 QQKLNQHLHTLQNIANTYNVAVFVTNQVAAXPD 159
>gb|AAD16064.1| (AF090198) recombination/repair protein RadA [Archaeoglobus
fulgidus]
Length = 136
Score = 173 bits (434), Expect = 3e-42
Identities = 85/136 (62%), Positives = 108/136 (78%)
Query: 153 QLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARA 212
Q+ H LAV VQLP +EGGL GSVI IDTENTFRPERI ++A+ +GLD +EVLK+IYVA+A
Sbjct: 1 QICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQA 60
Query: 213 FNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL 272
+NSNHQMLLV A++ ++L +PV+L+IVDSL SHFR+EY+GRG LA+RQQKL +HL
Sbjct: 61 YNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHL 120
Query: 273 ADLHRLANLYEIAVFV 288
DL + LY A+ V
Sbjct: 121 HDLMKFGELYNAAIVV 136
>gb|AAD16068.1| (AF090202) recombination/repair protein RadA [Methanothermus
fervidus]
Length = 133
Score = 163 bits (409), Expect = 2e-39
Identities = 84/137 (61%), Positives = 105/137 (76%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
+QLAH LAV VQLP E+GGL ++IDTENTFRPERI +IAK+ LD +VLK+IYVAR
Sbjct: 1 SQLAHELAVTVQLPIEKGGLEAEAVFIDTENTFRPERIEQIAKHFKLDTKKVLKNIYVAR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
AFNS+HQ+L+ +K+ +L+ K ++L+IVDSLTSHFR+EY+GR ALA RQQKL +H
Sbjct: 61 AFNSSHQILMA----EKVNDLIQEGKNIRLVIVDSLTSHFRAEYVGREALATRQQKLNQH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L LA Y IAVFV
Sbjct: 117 LHTLQNLATTYNIAVFV 133
>gb|AAD16067.1| (AF090201) recombination/repair protein RadA [Methanosarcina mazei]
Length = 143
Score = 155 bits (388), Expect = 7e-37
Identities = 82/143 (57%), Positives = 101/143 (70%), Gaps = 6/143 (4%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRG------LDPDEVLK 205
TQ+AH LAV VQ+ E GGL GSVI IDTENTFRPERI ++ L+P+E L+
Sbjct: 1 TQVAHQLAVNVQMDREHGGLGGSVIIIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQ 60
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I+VARA+NSNHQ+LLV A D EL KPV+LLIVDSL +HFR+EY+GRG LA+RQ
Sbjct: 61 NIHVARAYNSNHQILLVDSAVDLANELKEMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQ 120
Query: 266 QKLAKHLADLHRLANLYEIAVFV 288
QKL KH+ L R +L+ V V
Sbjct: 121 QKLNKHMHGLLRFGDLFNACVVV 143
>gb|AAD16087.1| (AF090221) recombination/repair protein RadA [uncultured archaeon
'Obsidian Pool #6']
Length = 132
Score = 155 bits (387), Expect = 9e-37
Identities = 78/137 (56%), Positives = 104/137 (74%), Gaps = 5/137 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+VMVQLP ++GGLN +++DTENTFRPERI +IAK RGLDP E L++I AR
Sbjct: 1 TQLCHQLSVMVQLPEDKGGLNAKALYVDTENTFRPERIMQIAKYRGLDPQEALRNILYAR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A+NS+HQM++++++ KI E N + L+++DSL +HFRSEY GR LAERQQKL H
Sbjct: 61 AYNSDHQMMIIEESR-KIIEREN----IGLIVIDSLVAHFRSEYPGRENLAERQQKLNHH 115
Query: 272 LADLHRLANLYEIAVFV 288
+A L R+A++Y AV V
Sbjct: 116 IAQLLRIADIYNAAVAV 132
>gb|AAD16086.1| (AF090220) recombination/repair protein RadA [uncultured archaeon
'Obsidian Pool #4']
Length = 132
Score = 154 bits (386), Expect = 1e-36
Identities = 75/137 (54%), Positives = 104/137 (75%), Gaps = 5/137 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+VMVQLP ++GGLN +++DTENTFRPERI +IAK RGLDP E L++I AR
Sbjct: 1 TQLCHQLSVMVQLPEDKGGLNAKALYVDTENTFRPERIMQIAKYRGLDPQEALRNILYAR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A+NS+HQM++++++ I++ + + L+++DSL +HFRSEY GR LAERQQKL H
Sbjct: 61 AYNSDHQMMIIEESRKIIEK-----ENLGLIVIDSLVAHFRSEYPGRENLAERQQKLNHH 115
Query: 272 LADLHRLANLYEIAVFV 288
+A L R+A++Y AV V
Sbjct: 116 IAQLLRIADIYNAAVVV 132
>gb|AAD16081.1| (AF090215) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #14']
Length = 133
Score = 153 bits (383), Expect = 3e-36
Identities = 78/137 (56%), Positives = 99/137 (71%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+V VQLPPE+GGLNG ++IDTE TFR ERI +AK GLDPD + +IY R
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLNGKAVYIDTEGTFRWERIEAMAKAVGLDPDTAMNNIYYMR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQM +V+ ++EL+ + +KL+IVDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 61 AINSDHQMAIVED----LQELITKEPAIKLVIVDSVTSHFRAEYPGRENLAVRQQKLNKH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y+IA +
Sbjct: 117 LHQLVRLAEMYDIATII 133
>gb|AAD16085.1| (AF090219) recombination/repair protein RadA [uncultured archaeon
'Obsidian Pool #3']
Length = 131
Score = 153 bits (383), Expect = 3e-36
Identities = 77/136 (56%), Positives = 103/136 (75%), Gaps = 5/136 (3%)
Query: 153 QLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARA 212
QL H L+VMVQLP ++GGLN +++DTENTFRPERI +IAK RGLDP E L++I ARA
Sbjct: 1 QLCHQLSVMVQLPEDKGGLNAKALYVDTENTFRPERIMQIAKYRGLDPQEALRNILYARA 60
Query: 213 FNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL 272
+NS+HQM++++++ KI E N + L+++DSL +HFRSEY GR LAERQQKL H+
Sbjct: 61 YNSDHQMMIIEESR-KIIEREN----IGLIVIDSLVAHFRSEYPGRENLAERQQKLNHHI 115
Query: 273 ADLHRLANLYEIAVFV 288
A L R+A++Y AV V
Sbjct: 116 AQLLRIADIYNAAVVV 131
>gb|AAD16073.1| (AF090207) recombination/repair protein RadA [Sulfolobus shibatae]
>gi|4322528|gb|AAD16080.1| (AF090214)
recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #13']
Length = 133
Score = 152 bits (379), Expect = 8e-36
Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+V VQLPPE+GGL+G ++IDTE TFR ERI +AK GLD D V+ +IY R
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V D ++EL++ D +KL++VDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 61 AINTDHQIAIV----DDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y+IAV +
Sbjct: 117 LHQLTRLAEVYDIAVII 133
>gb|AAD16084.1| (AF090218) recombination/repair protein RadA [uncultured archaeon
'Obsidian Pool #1']
Length = 133
Score = 152 bits (379), Expect = 8e-36
Identities = 77/137 (56%), Positives = 99/137 (72%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+V VQLPPE+GGLNG ++IDTE TFR ERI +AK GLDPD + +IY R
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLNGKAVYIDTEGTFRWERIEAMAKAVGLDPDTAMNNIYYMR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQM +V+ ++EL+ + +KL+IVDS+TSHFR+E+ GR LA RQQKL KH
Sbjct: 61 AINSDHQMAIVED----LQELITKEPAIKLVIVDSVTSHFRAEFPGRENLAVRQQKLNKH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y+IA +
Sbjct: 117 LHQLVRLAEMYDIATII 133
>gb|AAD16077.1| (AF090211) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #6']
Length = 133
Score = 151 bits (378), Expect = 1e-35
Identities = 77/137 (56%), Positives = 100/137 (72%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H L+V VQLPPE+GGL+G ++IDTE TFR ERI +AK GLD D V+ +IY R
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V D ++EL++ D +KL++VDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 61 AINTDHQIAIV----DDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA Y+IAV +
Sbjct: 117 LHQLTRLAEFYDIAVII 133
>gb|AAD16074.1| (AF090208) recombination/repair protein RadA [Sulfolobus
acidocaldarius]
Length = 133
Score = 150 bits (376), Expect = 2e-35
Identities = 76/137 (55%), Positives = 98/137 (71%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H +++ VQLP E+GGLNG ++IDTE TFR ERI +AK GL+ D + +IY R
Sbjct: 1 TQLCHQISISVQLPQEKGGLNGKAVYIDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQM +V D ++EL+ D +KL+IVDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 61 AINSDHQMAIV----DDLQELITKDPAIKLIIVDSITSHFRAEYPGRENLAVRQQKLNKH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y+IAV +
Sbjct: 117 LHQLVRLAEMYDIAVII 133
>gb|AAD16088.1| (AF090222) recombination/repair protein RadA [uncultured archaeon
'Obsidian Pool #9']
Length = 133
Score = 150 bits (375), Expect = 2e-35
Identities = 79/137 (57%), Positives = 98/137 (70%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H L+V VQLP E+GGLNG ++IDTE TFR ERI +AK LDPD V +IY R
Sbjct: 1 TQICHQLSVNVQLPYEKGGLNGKAVYIDTEGTFRWERIENMAKALNLDPDVVESNIYYMR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQ+ +V D ++EL+N D +KL+IVDS+TSHFR+EY GR LA RQQKL KH
Sbjct: 61 AINSDHQIAIV----DDLQELINKDPSIKLVIVDSVTSHFRAEYPGRENLAARQQKLNKH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y +AV V
Sbjct: 117 LHQLVRLAEMYNLAVVV 133
>emb|CAC14294.1| (AJ296174) Rad51C protein [Arabidopsis thaliana]
Length = 363
Score = 150 bits (374), Expect = 3e-35
Identities = 109/336 (32%), Positives = 171/336 (50%), Gaps = 41/336 (12%)
Query: 50 VGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT------ 103
+ P+ KL AG+ L +IA S +L A I+E A +I++ A ++ G+
Sbjct: 29 LSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNGSRSLING 88
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
A + L + ES+ RI+T LD +LGGGI + +TE+ G G GKTQ+ L+V VQ
Sbjct: 89 AKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQ 148
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAK--------------------NRGLDPDEV 203
+P E GGL G I+IDTE +F ER +IA+ + P+++
Sbjct: 149 IPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDI 208
Query: 204 LKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAE 263
L++I+ R + Q+ LV E I E +K VK++IVDS+T HFR +Y LA+
Sbjct: 209 LENIFYFRVCSYTEQIALVNHLEKFISE----NKDVKVVIVDSITFHFRQDY---DDLAQ 261
Query: 264 RQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIG---GHILAHSATLRV 320
R + L++ +LA + +AV + NQV + F + + + G +HS T RV
Sbjct: 262 RTRVLSEMALKFMKLAKKFSLAVVLLNQVTTK----FSEGSFQLALALGDSWSHSCTNRV 317
Query: 321 YLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
L G +R A + +P LP A + +T +G+ +
Sbjct: 318 IL-YWNGDERYAYIDKSPSLPSASASYTVTSRGLRN 352
>emb|CAC14091.1| (AJ299424) RAD51C protein [Arabidopsis thaliana]
Length = 363
Score = 148 bits (370), Expect = 9e-35
Identities = 108/336 (32%), Positives = 171/336 (50%), Gaps = 41/336 (12%)
Query: 50 VGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGT------ 103
+ P+ KL AG+ L +IA S +L A I+E A +I++ A ++ G+
Sbjct: 29 LSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNGSRSLING 88
Query: 104 FMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 163
A + L + ES+ RI+T LD +LGGGI + +TE+ G G GKTQ+ L+V VQ
Sbjct: 89 AKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQ 148
Query: 164 LPPEEGGLNGSVIWIDTENTFRPERIREIAK--------------------NRGLDPDEV 203
+P E GGL G I+IDTE +F +R +IA+ + P+++
Sbjct: 149 IPRECGGLGGKAIYIDTEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDI 208
Query: 204 LKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAE 263
L++I+ R + Q+ LV E I E +K VK++IVDS+T HFR +Y LA+
Sbjct: 209 LENIFYFRVCSYTEQIALVNHLEKFISE----NKDVKVVIVDSITFHFRQDY---DDLAQ 261
Query: 264 RQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIG---GHILAHSATLRV 320
R + L++ +LA + +AV + NQV + F + + + G +HS T RV
Sbjct: 262 RTRVLSEMALKFMKLAKKFSLAVVLLNQVTTK----FSEGSFQLALALGDSWSHSCTNRV 317
Query: 321 YLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
L G +R A + +P LP A + +T +G+ +
Sbjct: 318 IL-YWNGDERYAYIDKSPSLPSASASYTVTSRGLRN 352
>gb|AAD16071.1| (AF090205) recombination/repair protein RadA [Picrophilus torridus]
Length = 132
Score = 146 bits (366), Expect = 3e-34
Identities = 72/137 (52%), Positives = 99/137 (71%), Gaps = 5/137 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H LAV +P E+ G + V+ IDTENTFRPERI ++A+ + LDPD+ L+ I+VAR
Sbjct: 1 TQIMHQLAVNATMPVEKNGFDSDVLIIDTENTFRPERIIQMARAKDLDPDQTLERIHVAR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A+NS+HQ+LL ++A D +E ++LLIVDSLTSHFRSEY+GRG+LAERQQ L +H
Sbjct: 61 AYNSHHQILLAEKAADMAREY-----KIRLLIVDSLTSHFRSEYVGRGSLAERQQLLNRH 115
Query: 272 LADLHRLANLYEIAVFV 288
+ DL + +Y + V
Sbjct: 116 MHDLLKFGTIYNAVIAV 132
>gb|AAD16072.1| (AF090206) recombination/repair protein RadA [Picrophilus oshimae]
Length = 132
Score = 146 bits (365), Expect = 3e-34
Identities = 72/137 (52%), Positives = 99/137 (71%), Gaps = 5/137 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H LAV +P E+ G + V+ IDTENTFRPERI ++A+ + LDPD+ L+ I+VAR
Sbjct: 1 TQIMHQLAVNATMPVEKNGFDSDVLIIDTENTFRPERIIQMARAKDLDPDQTLERIHVAR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A+NS+HQ+LL ++A D +E ++LLIVDSLTSHFRSEY+GRG+LAERQQ L +H
Sbjct: 61 AYNSHHQILLAEKAADMAREY-----RIRLLIVDSLTSHFRSEYVGRGSLAERQQLLNRH 115
Query: 272 LADLHRLANLYEIAVFV 288
+ DL + +Y + V
Sbjct: 116 MHDLLKFGTIYNAVIAV 132
>gb|AAD16075.1| (AF090209) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #1']
Length = 132
Score = 145 bits (361), Expect = 1e-33
Identities = 77/137 (56%), Positives = 99/137 (72%), Gaps = 5/137 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H LAV VQLP ++GGL+G +IDTE TFR ERI ++A+ GLDPD+V+ +IY R
Sbjct: 1 TQVCHQLAVNVQLPEDKGGLSGKAAYIDTEGTFRWERIDQMARGLGLDPDKVMDNIYWIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQM +V Q + I + +PV+L+IVDSLTSHFR+E+ GR LA RQQ L KH
Sbjct: 61 AINSHHQMAIVDQLFEMIDK-----EPVRLVIVDSLTSHFRAEFPGRENLASRQQLLNKH 115
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y+IAV V
Sbjct: 116 LHQLMRLAEVYDIAVVV 132
>gb|AAD16078.1| (AF090212) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #8']
Length = 133
Score = 145 bits (361), Expect = 1e-33
Identities = 73/137 (53%), Positives = 98/137 (71%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H ++V VQLPPE+GGL G ++IDTE TFR ERIR +A GLDP E L +I R
Sbjct: 1 TQICHQISVNVQLPPEKGGLAGKALYIDTEGTFRTERIRAMASALGLDPKEALSNIMSIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V++ +D L+ D +KL++VDS+TSHFR+EY GR LA RQQKL +H
Sbjct: 61 AINTDHQIAIVEELQD----LIAKDDRIKLVVVDSVTSHFRAEYSGRENLAARQQKLNRH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y++AV V
Sbjct: 117 LHQLVRLAEIYDLAVVV 133
>gb|AAD16082.1| (AF090216) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #16']
Length = 133
Score = 145 bits (361), Expect = 1e-33
Identities = 73/137 (53%), Positives = 98/137 (71%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H ++V VQLPPE+GGL G ++IDTE TFR ERIR +A GLDP E L +I R
Sbjct: 1 TQICHQISVNVQLPPEKGGLAGKALYIDTEGTFRTERIRAMASALGLDPKEALSNIMSIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V++ +D L+ D +KL++VDS+TSHFR+EY GR LA RQQKL +H
Sbjct: 61 AINTDHQIAIVEELQD----LIAKDDRIKLVVVDSVTSHFRAEYSGRENLATRQQKLNRH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y++AV V
Sbjct: 117 LHQLVRLAEIYDLAVVV 133
>gb|AAD16079.1| (AF090213) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #9']
Length = 133
Score = 142 bits (355), Expect = 5e-33
Identities = 72/137 (52%), Positives = 98/137 (70%), Gaps = 4/137 (2%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL + L+V VQLPPE GGL G ++IDTE TFR ERI IA+ +DPD ++ +I R
Sbjct: 1 TQLCNQLSVNVQLPPERGGLGGKAVYIDTEGTFRWERIEAIARGAKVDPDSIMGNIMYIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQ+ +V++ ++EL+ D+ VKL++VDS TSHFR+EY GR LA RQQKL +H
Sbjct: 61 AVNSDHQIAIVEE----LQELIAKDQQVKLVVVDSATSHFRAEYTGRENLATRQQKLNRH 116
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y++AV +
Sbjct: 117 LYQLLRLAEIYDMAVVI 133
>gb|AAD16083.1| (AF090217) recombination/repair protein RadA [uncultured archaeon
'Queen's Laundry #28']
Length = 121
Score = 141 bits (353), Expect = 9e-33
Identities = 71/127 (55%), Positives = 97/127 (75%), Gaps = 8/127 (6%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
+Q+ H LAV VQLP GGL+G+ ++IDTENTFRPERI +A++ GL+PDEV++ I +
Sbjct: 1 SQICHQLAVNVQLPVRRGGLDGAALYIDTENTFRPERIISMARHLGLEPDEVMERIIYSE 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A+ S+HQMLL+++A+ +KE K V+L+I+DSLT+HFRS Y+GR LAERQQKL KH
Sbjct: 61 AYTSDHQMLLLEKADRVVKE-----KGVRLIIIDSLTAHFRSSYLGRELLAERQQKLNKH 115
Query: 272 LADLHRL 278
+HRL
Sbjct: 116 ---MHRL 119
>gb|AAD16076.1| (AF090210) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #4']
Length = 129
Score = 139 bits (348), Expect = 3e-32
Identities = 71/131 (54%), Positives = 93/131 (70%), Gaps = 4/131 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQL H ++V VQLPPE+GGL G ++IDTE TFR ERIR +A GLDP E L +I R
Sbjct: 1 TQLCHQISVNVQLPPEKGGLAGKALYIDTEGTFRTERIRAMASALGLDPKEALSNIMSIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A N++HQ+ +V++ +D L+ D +KL++VDS+TSHFR+EY GR LA RQQKL +H
Sbjct: 61 AINTDHQIAIVEELQD----LIAKDDRIKLVVVDSVTSHFRAEYSGRENLAARQQKLNRH 116
Query: 272 LADLHRLANLY 282
L L RLA +Y
Sbjct: 117 LHQLVRLAEIY 127
>gb|AAD16065.1| (AF090199) recombination/repair protein RadA [Haloarcula hispanica]
Length = 166
Score = 139 bits (347), Expect = 4e-32
Identities = 78/166 (46%), Positives = 104/166 (61%), Gaps = 29/166 (17%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKN---------------- 195
+Q+ H L+V VQLP E GGL GS I++D+E+TFRPERI ++ K
Sbjct: 1 SQVTHQLSVNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQMVKGLADEVLADTMVLHGIV 60
Query: 196 -RGLDPD------------EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLL 242
G D D VL+ I+VA+AFNSNHQ+LL ++A++ E + + PV+LL
Sbjct: 61 EEGDDADPTDEDLLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQDEEFPVRLL 120
Query: 243 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288
VDSLT+HFR+EY+GRG LA+RQQKL KHL DL R+ +L AV V
Sbjct: 121 AVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVV 166
>gb|AAD16089.1| (AF090223) recombination/repair protein RadA [uncultured archaeon
'Obsidian Pool #10']
Length = 132
Score = 139 bits (347), Expect = 4e-32
Identities = 75/137 (54%), Positives = 98/137 (70%), Gaps = 5/137 (3%)
Query: 152 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 211
TQ+ H LAV VQLP ++GGL ++IDTE TFR ERI ++A+ GLDPD+V+ +IY R
Sbjct: 1 TQVCHQLAVNVQLPEDKGGLGAKAVYIDTEGTFRWERIDQMARGLGLDPDKVMDNIYWIR 60
Query: 212 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 271
A NS+HQM +V D + +LL+ D VKL++VDSLTSHFR+E+ GR LA RQQ L +H
Sbjct: 61 AINSHHQMAIV----DSLFDLLSKDN-VKLVVVDSLTSHFRAEFPGRENLAARQQLLNRH 115
Query: 272 LADLHRLANLYEIAVFV 288
L L RLA +Y+ AV V
Sbjct: 116 LHQLMRLAEVYDAAVVV 132
>gb|AAG32018.1|AF277261_1 (AF277261) disrupted meiotic cDNA 1 protein [Psathyrostachys
fragilis fragilis]
Length = 138
Score = 134 bits (333), Expect = 2e-30
Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L ++A+ + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTKIADEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG31991.1|AF277234_1 (AF277234) disrupted meiotic cDNA 1 protein [Bromus sterilis]
>gi|11141545|gb|AAG31992.1|AF277235_1 (AF277235)
disrupted meiotic cDNA 1 protein [Aegilops tauschii]
>gi|11141561|gb|AAG32000.1|AF277243_1 (AF277243)
disrupted meiotic cDNA 1 protein [Amblyopyrum muticum]
>gi|11141577|gb|AAG32008.1|AF277251_1 (AF277251)
disrupted meiotic cDNA 1 protein [Australopyrum
retrofractum] >gi|11141585|gb|AAG32012.1|AF277255_1
(AF277255) disrupted meiotic cDNA 1 protein [Henrardia
persica] >gi|11141593|gb|AAG32016.1|AF277259_1
(AF277259) disrupted meiotic cDNA 1 protein [Hordeum
erectifolium] >gi|11141599|gb|AAG32019.1|AF277262_1
(AF277262) disrupted meiotic cDNA 1 protein [Hordeum
vulgare]
Length = 138
Score = 133 bits (332), Expect = 3e-30
Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L ++A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32009.1|AF277252_1 (AF277252) disrupted meiotic cDNA 1 protein [Australopyrum
pectinatum]
Length = 138
Score = 133 bits (332), Expect = 3e-30
Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L ++A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTKIAEEFNVAVYITNQVIADPXGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32020.1|AF277263_1 (AF277263) disrupted meiotic cDNA 1 protein [Psathyrostachys
fragilis villosus]
Length = 138
Score = 133 bits (331), Expect = 3e-30
Identities = 71/141 (50%), Positives = 97/141 (68%), Gaps = 7/141 (4%)
Query: 207 IYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQ 266
I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQQ
Sbjct: 3 IIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQQ 57
Query: 267 KLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRK 324
KLA+ L+ L ++A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LRK
Sbjct: 58 KLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRK 117
Query: 325 GKGGKRVARLIDAPHLPEGEA 345
GKG +RV ++ DAP+LPEGEA
Sbjct: 118 GKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG31999.1|AF277242_1 (AF277242) disrupted meiotic cDNA 1 protein [Comopyrum comosum]
>gi|11141565|gb|AAG32002.1|AF277245_1 (AF277245)
disrupted meiotic cDNA 1 protein [Pseudoroegneria
spicata] >gi|11141567|gb|AAG32003.1|AF277246_1
(AF277246) disrupted meiotic cDNA 1 protein [Elytrigia
elongata]
Length = 138
Score = 132 bits (329), Expect = 6e-30
Identities = 71/142 (50%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L +A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32017.1|AF277260_1 (AF277260) disrupted meiotic cDNA 1 protein [Hordeum brachyantherum
californicum]
Length = 138
Score = 132 bits (329), Expect = 6e-30
Identities = 70/142 (49%), Positives = 98/142 (68%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLI+DS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIMDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L ++A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32011.1|AF277254_1 (AF277254) disrupted meiotic cDNA 1 protein [Thinopyrum
bessarabicum]
Length = 138
Score = 132 bits (328), Expect = 7e-30
Identities = 70/142 (49%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L ++ + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTKIXEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG31993.1|AF277236_1 (AF277236) disrupted meiotic cDNA 1 protein [Eremopyrum distans]
Length = 138
Score = 131 bits (326), Expect = 1e-29
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ +A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSXXXXIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32001.1|AF277244_1 (AF277244) disrupted meiotic cDNA 1 protein [Peridictyon sanctum]
>gi|11141569|gb|AAG32004.1|AF277247_1 (AF277247)
disrupted meiotic cDNA 1 protein [Festucopsis
serpentini] >gi|11141589|gb|AAG32014.1|AF277257_1
(AF277257) disrupted meiotic cDNA 1 protein [Hordeum
marinum] >gi|11141603|gb|AAG32021.1|AF277264_1
(AF277264) disrupted meiotic cDNA 1 protein
[Psathyrostachys stoloniformis]
Length = 138
Score = 131 bits (326), Expect = 1e-29
Identities = 71/142 (50%), Positives = 96/142 (67%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG31996.1|AF277239_1 (AF277239) disrupted meiotic cDNA 1 protein [Heteranthelium
piliferum] >gi|11141555|gb|AAG31997.1|AF277240_1
(AF277240) disrupted meiotic cDNA 1 protein [Crithopsis
delileana] >gi|11141591|gb|AAG32015.1|AF277258_1
(AF277258) disrupted meiotic cDNA 1 protein [Hordeum
murinum glaucum]
Length = 138
Score = 130 bits (323), Expect = 3e-29
Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXXXFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32013.1|AF277256_1 (AF277256) disrupted meiotic cDNA 1 protein [Sitopsis speltoides]
Length = 138
Score = 129 bits (322), Expect = 4e-29
Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG31995.1|AF277238_1 (AF277238) disrupted meiotic cDNA 1 protein [Haynaldia villosa]
Length = 136
Score = 128 bits (319), Expect = 8e-29
Identities = 69/141 (48%), Positives = 94/141 (65%), Gaps = 7/141 (4%)
Query: 207 IYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQ 266
I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQQ
Sbjct: 1 IIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQQ 55
Query: 267 KLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRK 324
KLA+ + +A + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LRK
Sbjct: 56 KLAQMXSRXXXIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRK 115
Query: 325 GKGGKRVARLIDAPHLPEGEA 345
GKG +RV ++ DAP+LPEGEA
Sbjct: 116 GKGEQRVCKIFDAPNLPEGEA 136
>gb|AAG32010.1|AF277253_1 (AF277253) disrupted meiotic cDNA 1 protein [Australopyrum
velutinum]
Length = 138
Score = 128 bits (319), Expect = 8e-29
Identities = 70/142 (49%), Positives = 94/142 (65%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXXXXNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAB82635.1| (AC002387) putative RAD51C-like DNA repair protein [Arabidopsis
thaliana]
Length = 332
Score = 128 bits (318), Expect = 1e-28
Identities = 96/297 (32%), Positives = 149/297 (49%), Gaps = 36/297 (12%)
Query: 83 ISEGAALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITE 142
IS G A+ +++L A + L + ES+ RI+T LD +LGGGI + +TE
Sbjct: 38 ISAGYTCLSSIASVSSSDLARAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTE 97
Query: 143 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAK-------- 194
+ G G GKTQ+ L+V VQ+P E GGL G I+IDTE +F ER +IA+
Sbjct: 98 IGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEE 157
Query: 195 ------------NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLL 242
+ P+++L++I+ R + Q+ LV E I E N D ++
Sbjct: 158 YTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISE--NKD---VVV 212
Query: 243 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGD 302
IVDS+T HFR +Y LA+R + L++ +LA + +AV + NQV + F +
Sbjct: 213 IVDSITFHFRQDY---DDLAQRTRVLSEMALKFMKLAKKFSLAVVLLNQVTTK----FSE 265
Query: 303 PTRPIG---GHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+ + G +HS T RV L G +R A + +P LP A + +T +G+ +
Sbjct: 266 GSFQLALALGDSWSHSCTNRVIL-YWNGDERYAYIDKSPSLPSASASYTVTSRGLRN 321
>gb|AAG32006.1|AF277249_1 (AF277249) disrupted meiotic cDNA 1 protein [Taeniatherum
caput-medusae]
Length = 138
Score = 128 bits (318), Expect = 1e-28
Identities = 70/142 (49%), Positives = 94/142 (65%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXXXXXVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG31994.1|AF277237_1 (AF277237) disrupted meiotic cDNA 1 protein [Eremopyrum triticeum]
Length = 136
Score = 127 bits (317), Expect = 1e-28
Identities = 69/141 (48%), Positives = 93/141 (65%), Gaps = 7/141 (4%)
Query: 207 IYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQ 266
I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQQ
Sbjct: 1 IIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQQ 55
Query: 267 KLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRK 324
KLA+ L+ + +AV++TNQV A P F DP +P GGH+LAH+AT+R+ LRK
Sbjct: 56 KLAQMLSRXXXXXEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRK 115
Query: 325 GKGGKRVARLIDAPHLPEGEA 345
GKG +RV ++ DAP+LPEGEA
Sbjct: 116 GKGEQRVCKIFDAPNLPEGEA 136
>gb|AAG31998.1|AF277241_1 (AF277241) disrupted meiotic cDNA 1 protein [Agropyron cristatum]
Length = 138
Score = 127 bits (316), Expect = 2e-28
Identities = 69/142 (48%), Positives = 94/142 (65%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L +A+++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXXXXNVALYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>gb|AAG32007.1|AF277250_1 (AF277250) disrupted meiotic cDNA 1 protein [Crithodium monococcum]
Length = 138
Score = 126 bits (313), Expect = 4e-28
Identities = 69/142 (48%), Positives = 93/142 (64%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L +A ++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXXXXXVAXYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>pir||C75199 recombinase PAB2270 - Pyrococcus abyssi (strain Orsay)
>gi|5457551|emb|CAB49042.1| (AJ248283) Recombinase
[Pyrococcus abyssi]
Length = 239
Score = 125 bits (310), Expect = 1e-27
Identities = 93/253 (36%), Positives = 137/253 (53%), Gaps = 28/253 (11%)
Query: 105 MRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 164
MRA +Y K ++ +TG K LD+LLGGG+ I +V+G F +GKT T A+ V L
Sbjct: 1 MRASKYEAKGMTL---TTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGL 53
Query: 165 PPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 224
E G V ++DTE F PER++++A++RGLDP++ L + + N Q ++
Sbjct: 54 LNE-----GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRII-- 106
Query: 225 AEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEI 284
K+K ++ +DK L++VDSLT+H+R+E + +LAK L L LA +
Sbjct: 107 --SKLKTVV-SDK-FSLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNV 156
Query: 285 AVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
AV V NQV + + RPI H L + + K + G R+A L PEG
Sbjct: 157 AVIVVNQVYYDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGG 213
Query: 345 AV-FRITEKGIED 356
V F+IT+KGIED
Sbjct: 214 IVYFKITDKGIED 226
>sp|O57859|R51L_PYRHO PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|7429109|pir||E71232
probable DNA repair protein - Pyrococcus horikoshii
>gi|3256505|dbj|BAA29188.1| (AP000001) 228aa long
hypothetical DNA repair protein [Pyrococcus horikoshii]
Length = 228
Score = 124 bits (309), Expect = 1e-27
Identities = 86/238 (36%), Positives = 131/238 (54%), Gaps = 25/238 (10%)
Query: 120 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 179
++TG K LD+LLGGG+ + I +V+G F +GKT T A+ V L E G V ++D
Sbjct: 13 LTTGVKGLDELLGGGVARRVILQVYGPFATGKT----TFAMQVGLLNE-----GKVAYVD 63
Query: 180 TENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPV 239
TE F PER+ ++A++RGLDP++ L + + N Q ++ K+K ++ D+
Sbjct: 64 TEGGFSPERLAQMARSRGLDPEKALSKFIIFEPMDLNEQRRVI----SKLKTIV--DEKF 117
Query: 240 KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAF 299
L++VDSLT+H+R+E ++ +LAK L L LA +AV V NQV ++
Sbjct: 118 SLVVVDSLTAHYRAEG------SKNYGELAKQLQVLQWLARRKNVAVIVINQVYHDSNS- 170
Query: 300 FGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV-FRITEKGIED 356
+ RPI H L + + K + G R+A L PEG V F+IT+KG+ED
Sbjct: 171 --NSLRPIAEHTLGYRTKDILRFEKLRVGVRLAVLERHRFRPEGGIVYFKITDKGLED 226
>gb|AAD16066.1| (AF090200) recombination/repair protein RadA [Methanococcus voltae]
Length = 143
Score = 124 bits (309), Expect = 1e-27
Identities = 70/147 (47%), Positives = 97/147 (65%), Gaps = 14/147 (9%)
Query: 152 TQLAHTLAVMVQLPP-----EEGGLNGSV-----IWIDTENTFRPERIREIAKNRGLDPD 201
TQ+ H V +Q P EE G V ++IDTE TFRPERI ++A++ G+D
Sbjct: 1 TQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQ 60
Query: 202 EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGAL 261
VL + +VARA+NS+ QML ++ ED I+E N +KL+++DSLTS FR+EY GRG L
Sbjct: 61 TVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNN----IKLVVIDSLTSTFRNEYTGRGKL 116
Query: 262 AERQQKLAKHLADLHRLANLYEIAVFV 288
AERQQKL +H+A L++LA+L+ V V
Sbjct: 117 AERQQKLGRHMATLNKLADLFNCVVLV 143
>gb|AAG32005.1|AF277248_1 (AF277248) disrupted meiotic cDNA 1 protein [Secale strictum]
Length = 138
Score = 123 bits (305), Expect = 4e-27
Identities = 68/142 (47%), Positives = 91/142 (63%), Gaps = 7/142 (4%)
Query: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQ 265
+I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LAERQ
Sbjct: 2 NIIYARAYTYEHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFSGRGELAERQ 56
Query: 266 QKLAKHLADLHRLANLYEIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLR 323
QKLA+ L+ L ++TNQV A P F DP +P GGH+LAH+AT+R+ LR
Sbjct: 57 QKLAQMLSRLTXXXXXXXXXXYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116
Query: 324 KGKGGKRVARLIDAPHLPEGEA 345
KGKG +RV ++ DAP+LPEGEA
Sbjct: 117 KGKGEQRVCKIFDAPNLPEGEA 138
>sp|O43502|R51C_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 3 >gi|2909801|gb|AAC39604.1|
(AF029669) Rad51C [Homo sapiens]
Length = 376
Score = 119 bits (295), Expect = 5e-26
Identities = 105/339 (30%), Positives = 158/339 (45%), Gaps = 41/339 (12%)
Query: 50 VGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAAR------KAANLGT 103
+ PA KL AGF T E + P EL + GIS+ AL+ +Q R K GT
Sbjct: 19 LSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGT 78
Query: 104 F-----MRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTL 158
A E L++ + G I T +LD +LGGG+ TE+ G G GKTQL L
Sbjct: 79 SESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQL 138
Query: 159 AVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA------------KNRGLDP------ 200
AV VQ+P GG+ G ++IDTE +F +R+ ++A K++G +
Sbjct: 139 AVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALED 198
Query: 201 ---DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIG 257
D +L HIY R ++ LL Q + + L+ V+L+IVD + FR +
Sbjct: 199 FTLDNILSHIYYFRC--RDYTELLAQVY--LLPDFLSEHSKVRLVIVDGIAFPFRHDL-- 252
Query: 258 RGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 317
L+ R + L + LAN + +AV +TNQ+ + D P G H+AT
Sbjct: 253 -DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQA-LLVPALGESWGHAAT 310
Query: 318 LRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356
+R+ + +R+A L +P E +F+I +G D
Sbjct: 311 IRLIFHWDR-KQRLATLYKSPSQKECTVLFQIKPQGFRD 348
>gb|AAD16070.1| (AF090204) recombination/repair protein RadA [Methanococcus
maripaludis]
Length = 143
Score = 118 bits (293), Expect = 9e-26
Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 14/147 (9%)
Query: 152 TQLAHTLAVMVQLPPEE-GGLNGSV---------IWIDTENTFRPERIREIAKNRGLDPD 201
TQ+ H V +Q+ + L G V ++IDTE TFRPER+ ++A+ G+D
Sbjct: 1 TQIMHQTCVNLQMREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQ 60
Query: 202 EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGAL 261
VL + +VARA+NS+ QML ++ ED IK N +KL+I+DSLTS FR+E+ GRG L
Sbjct: 61 TVLDNTFVARAYNSDMQMLFAEKIEDLIKGGNN----IKLVIIDSLTSTFRNEFTGRGKL 116
Query: 262 AERQQKLAKHLADLHRLANLYEIAVFV 288
AERQQKL +H+A L++LA+LY V V
Sbjct: 117 AERQQKLGRHMATLNKLADLYNCIVLV 143
>pir||T46872 DNA repair protein rec [validated] - Pyrococcus sp
>gi|6009935|dbj|BAA11830.2| (D83176) Pk-rec [Pyrococcus
sp.]
Length = 220
Score = 114 bits (283), Expect = 1e-24
Identities = 86/240 (35%), Positives = 125/240 (51%), Gaps = 26/240 (10%)
Query: 120 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG-SVIWI 178
+STG+KSLD LLGGG +T+V+G + SGKT LA + G L+G V ++
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA----------LQTGLLSGKKVAYV 51
Query: 179 DTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKP 238
DTE F PER+ ++A+ RGL+P+E L + + Q ++ + + D
Sbjct: 52 DTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTV------DSN 105
Query: 239 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDA 298
L++VDS+T+H+R+E G +AE L++ L L +A + I V V NQV
Sbjct: 106 FALVVVDSITAHYRAEENRSGLIAE----LSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161
Query: 299 FFGDPTRPIGGHILAHSATLRVYLRK-GKGGKRVARLIDAPHLPEG-EAVFRITEKGIED 356
+ T+P+ L + + L K K G RVA L PEG A FRITE+GIED
Sbjct: 162 ---EMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIED 218
>pir||T43936 probable DNA repair protein [imported] - Pyrococcus furiosus
>gi|2967439|dbj|BAA25166.1| (D84670) ORF5 [Pyrococcus
furiosus] >gi|3560539|gb|AAC34999.1| (AF052598)
recombinase [Pyrococcus furiosus]
Length = 225
Score = 111 bits (274), Expect = 2e-23
Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 25/238 (10%)
Query: 120 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 179
++TG K LD+LLGGG+ I +V+G F +GKT T A+ V L E G V ++D
Sbjct: 7 LTTGVKGLDELLGGGVAKGVILQVYGPFATGKT----TFAMQVGLLNE-----GKVAYVD 57
Query: 180 TENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPV 239
TE F PER+ ++A++R LD ++ L+ + + N Q +Q ++K ++N +
Sbjct: 58 TEGGFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQ----RQVIARLKNIVN--EKF 111
Query: 240 KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAF 299
L++VDS T+H+R+E + +L+K L L +A +AV V NQV ++
Sbjct: 112 SLVVVDSFTAHYRAEG------SREYGELSKQLQVLQWIARRKNVAVIVVNQVYYDSNSG 165
Query: 300 FGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV-FRITEKGIED 356
+PI H L + + + + G R+A L PEG V F+IT+KG+ED
Sbjct: 166 I---LKPIAEHTLGYKTKDILRFERLRVGVRIAVLERHRFRPEGGMVYFKITDKGLED 220
>gb|AAG19917.1| (AE005075) DNA repair protein; RadA2 [Halobacterium sp. NRC-1]
Length = 236
Score = 108 bits (266), Expect = 1e-22
Identities = 77/243 (31%), Positives = 121/243 (49%), Gaps = 16/243 (6%)
Query: 114 RESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG 173
RE + TG +LD+LLGGG+E +T+++G +GKT +A T AV G
Sbjct: 2 REDDTHLPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTT------AAAGG 55
Query: 174 SVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELL 233
+++DTE R +++ + R DP+ ++ V+ A + + Q V+ D
Sbjct: 56 LAVYVDTEG-LSLARFQQLLEARATDPEAASANVIVSDAHDFDEQAQAVRDTADFADR-- 112
Query: 234 NTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQ 293
L++VDS+T +R G + +++A + L LA +++AV VTNQV
Sbjct: 113 -----ADLIVVDSVTGFYRLARGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVF 167
Query: 294 ARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE-AVFRITEK 352
D D RP+GGH LAH + L + +GG R A L P+GE A F+IT+
Sbjct: 168 TDVDN-DSDRARPLGGHTLAHWTGTVLRLDRFRGGTRRATLEKHRAKPDGEHAQFQITDG 226
Query: 353 GIE 355
GI+
Sbjct: 227 GID 229
>gi|6679613 RAD51 like 1 (S. cerevisiae) [Mus musculus]
>gi|3914533|sp|O35719|R51B_MOUSE DNA REPAIR PROTEIN
RAD51 HOMOLOG 2 >gi|2262211|gb|AAB63359.1| (U92068)
RecA-like protein [Mus musculus]
Length = 350
Score = 105 bits (260), Expect = 7e-22
Identities = 82/257 (31%), Positives = 131/257 (50%), Gaps = 20/257 (7%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ P ++L + SP+EL +V G+S +++ KA M+
Sbjct: 10 GLSPELCDRLSRYLIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC--APQMQTA 67
Query: 109 EYLKKRESI----GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 164
LK R S +ST +LD+ L GG+ ++TE+ G G GKTQ ++V+ L
Sbjct: 68 YELKTRRSAHLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATL 127
Query: 165 PPEEGGLNGSVIWIDTENTFRPERIREIAKNR---GLDPDEVL----KHIYVARAFNSNH 217
P GGL G+V++IDTE+ F ER+ EIA++R + +E L +++ R
Sbjct: 128 PTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEG 187
Query: 218 QMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADL 275
L+Q+ E +E+++ K VKL+IVDS+ S R E+ + G + ER + L K + L
Sbjct: 188 ---LLQRLESLEEEIIS--KGVKLVIVDSIASVVRKEFDPKLQGNIKERNKFLGKGASLL 242
Query: 276 HRLANLYEIAVFVTNQV 292
LA + I V +TNQ+
Sbjct: 243 KYLAGEFSIPVILTNQI 259
>gi|10835029 RAD51 (S. cerevisiae)-like 1 [Homo sapiens]
>gi|11435206|ref|XP_007456.1| RAD51 (S. cerevisiae)-like
1 [Homo sapiens] >gi|3914524|sp|O15315|R51B_HUMAN DNA
REPAIR PROTEIN RAD51 HOMOLOG 2 (R51H2)
>gi|2262209|gb|AAB63358.1| (U92074) RecA-like protein
[Homo sapiens] >gi|2801405|gb|AAC39723.1| (U84138) DNA
repair protein RAD51B [Homo sapiens]
Length = 350
Score = 105 bits (259), Expect = 9e-22
Identities = 87/340 (25%), Positives = 153/340 (44%), Gaps = 41/340 (12%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ ++L T + SP+EL +V G+S +++ +A M+
Sbjct: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC--APKMQTA 67
Query: 109 EYLKKRESI----GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 164
+K + S +ST +LD+ L GG+ ++TE+ G G GKTQ ++++ L
Sbjct: 68 YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
Query: 165 PPEEGGLNGSVIWIDTENTFRPERIREIAKN---RGLDPDEVL----KHIYVARAFNSNH 217
P GGL G+V++IDTE+ F ER+ EIA++ R + +E L +++ R +
Sbjct: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
Query: 218 QMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIG--RGALAERQQKLAKHLADL 275
+ ++ E++I K +KL+I+DS+ S R E+ +G L ER + LA+ + L
Sbjct: 188 VLQRIESLEEEI-----ISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSL 242
Query: 276 HRLANLYEIAVFVTNQVQARPDAFFGDPTRPIG---------------------GHILAH 314
LA + I V +TNQ+ + G+ +H
Sbjct: 243 KYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSH 302
Query: 315 SATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGI 354
S R+ L+ +R + +P P V+ I E+G+
Sbjct: 303 SVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>emb|CAA75680.1| (Y15571) possible altenative splicing. Variation under U92074 [Homo
sapiens]
Length = 350
Score = 105 bits (259), Expect = 9e-22
Identities = 87/340 (25%), Positives = 153/340 (44%), Gaps = 41/340 (12%)
Query: 49 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 108
G+ ++L T + SP+EL +V G+S +++ +A M+
Sbjct: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC--APKMQTA 67
Query: 109 EYLKKRESI----GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 164
+K + S +ST +LD+ L GG+ ++TE+ G G GKTQ ++++ L
Sbjct: 68 YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
Query: 165 PPEEGGLNGSVIWIDTENTFRPERIREIAKN---RGLDPDEVL----KHIYVARAFNSNH 217
P GGL G+V++IDTE+ F ER+ EIA++ R + +E L +++ R +
Sbjct: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
Query: 218 QMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIG--RGALAERQQKLAKHLADL 275
+ ++ E++I K +KL+I+DS+ S R E+ +G L ER + LA+ + L
Sbjct: 188 VLQRIESLEEEI-----ISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSL 242
Query: 276 HRLANLYEIAVFVTNQVQARPDAFFGDPTRPIG---------------------GHILAH 314
LA + I V +TNQ+ + G+ +H
Sbjct: 243 KYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSH 302
Query: 315 SATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGI 354
S R+ L+ +R + +P P V+ I E+G+
Sbjct: 303 SVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|11499679 DNA repair protein REC [Archaeoglobus fulgidus]
>gi|6225909|sp|O28184|R51L_ARCFU PROBABLE DNA REPAIR
PROTEIN RAD51-LIKE >gi|7429108|pir||H69511 DNA repair
protein REC homolog - Archaeoglobus fulgidus
>gi|2648436|gb|AAB89159.1| (AE000959) DNA repair protein
REC [Archaeoglobus fulgidus]
Length = 221
Score = 104 bits (256), Expect = 2e-21
Identities = 81/237 (34%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 120 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 179
I TGSK +D LLGGG+ET +T+++G G+GKT L LA + V +ID
Sbjct: 6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLA-------KNAAEQFKVAYID 58
Query: 180 TENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPV 239
TE ER+R+I + + +++V + Q + +Q+AE +L ++K V
Sbjct: 59 TEG-LSGERVRQI-----FGDERLFSNVFVYEVYRFRQQGVAIQEAE----KLCRSEK-V 107
Query: 240 KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAF 299
KL+IVD TS +RSE + +++L L L +A Y++AV +TNQ+ D
Sbjct: 108 KLVIVDCFTSLYRSELEDDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFT--DVG 165
Query: 300 FGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVF-RITEKGIE 355
G RP+GG L H + + + L + R A LI + EG++ F RIT++GIE
Sbjct: 166 SG-VDRPLGGPSLEHLSKVIIALER-SNELRKATLIKHRWMKEGKSCFYRITDRGIE 220
>gi|4885659 X-ray repair complementing defective repair in Chinese hamster
cells 3; X-ray-repair, complementing defective, repair
in Chinese hamster [Homo sapiens]
>gi|2921390|gb|AAC05368.1| (AF035586) X-ray repair
cross-complementing protein 3 [Homo sapiens]
Length = 346
Score = 98.7 bits (242), Expect = 9e-20
Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 31/337 (9%)
Query: 46 DLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFM 105
DL + P +++A +++ + S +LK + +S +++ A + +
Sbjct: 4 DLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSIL 63
Query: 106 RADEYLKKRESIG----RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 161
A + +++E R+S G LD LL GG+ ITE+ G +GKTQLA L +
Sbjct: 64 TALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123
Query: 162 VQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLL 221
VQ P + GGL ++I TE+ F +R++++ + +V + F S Q+ +
Sbjct: 124 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGS--QIFI 181
Query: 222 VQQAE-DKIKELLNTDKPV-------KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 273
A+ D + E +N PV +L+++DS+ + FR E+ + A A R + L A
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQ-ASAPRARHLQSLGA 240
Query: 274 DLHRLANLYEIAVFVTNQVQAR---------PDAFFGDPTRPIGGHILAHSATLRVY--- 321
L L++ ++ V NQV P F+ + P G A+ +R+
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
Query: 322 LRKGKGG----KRVARLIDAPHLPEGEAVFRITEKGI 354
LR+ + R R++ APHLP + I+ +G+
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|11433489 X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens] >gi|2921500|gb|AAC04805.1|
(AF037222) XRCC3 [Homo sapiens]
Length = 346
Score = 97.9 bits (240), Expect = 2e-19
Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 31/337 (9%)
Query: 46 DLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFM 105
DL + P +++A +++ + S +LK + +S +++ A + +
Sbjct: 4 DLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSIL 63
Query: 106 RADEYLKKRESIG----RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 161
A + +++E R+S G LD LL GG+ ITE+ G +GKTQLA L +
Sbjct: 64 TALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123
Query: 162 VQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLL 221
VQ P + GGL ++I TE+ F +R++++ + +V + F S Q+ +
Sbjct: 124 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGS--QIFI 181
Query: 222 VQQAE-DKIKELLNTDKPV-------KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 273
A+ D + E +N PV +L+++DS+ + FR E+ + A A R + L A
Sbjct: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQ-ASAPRARHLQSLGA 240
Query: 274 DLHRLANLYEIAVFVTNQVQAR---------PDAFFGDPTRPIGGHILAHSATLRVY--- 321
L L++ ++ V NQV P F+ + P G A+ +R+
Sbjct: 241 MLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
Query: 322 LRKGKGG----KRVARLIDAPHLPEGEAVFRITEKGI 354
LR+ + R R++ APHLP + I+ +G+
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>dbj|BAB08781.1| (AB011482) contains similarity to DNA repair protein~gene_id:MUA2.3
[Arabidopsis thaliana]
Length = 304
Score = 92.1 bits (225), Expect = 9e-18
Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 46/295 (15%)
Query: 105 MRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 164
++ + L++ + +++TG + LD L GGI ++TE+ E G GKTQL L++ QL
Sbjct: 6 IKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQL 65
Query: 165 PPEEGGLNGSVIWIDTENTFRPERIREIAKN-RGLDP-------DEVLKHIYVARAFNSN 216
P GGLNGS +++ +E F R+ +++ +P D H++V + +
Sbjct: 66 PISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVD 125
Query: 217 HQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGA-LAERQQKLAKHLADL 275
H ++ + + + T P+KL+++DS+ + FRSE+ + L +R K L
Sbjct: 126 HLFDIMPRIDGFVGN-SKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKL 184
Query: 276 HRLANLYEIAVFVTNQVQARPDAFFGDPTRPIG----------------GHILAHSATLR 319
+LA+ +++A+ +TNQV + G IG G A+ R
Sbjct: 185 KQLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSR 244
Query: 320 VYLRKGKG--------------------GKRVARLIDAPHLPEGEAVFRITEKGI 354
++ + G KR ++ +P+LP F IT +GI
Sbjct: 245 FFISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGI 299
>gb|AAD21490.1| (AC006587) putative RAD51B-like DNA repair protein [Arabidopsis
thaliana]
Length = 353
Score = 89.3 bits (218), Expect = 6e-17
Identities = 79/257 (30%), Positives = 119/257 (45%), Gaps = 41/257 (15%)
Query: 118 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 177
G + T K LD L GGI +TE+ G G GK+Q LA+ P GGL+G VI+
Sbjct: 83 GHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIY 142
Query: 178 IDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDK 237
ID E+ F R+ E+ GL+ + H+ + +Q+ ++ I +
Sbjct: 143 IDVESKFSSRRVIEM----GLESFPEVFHLKGMAQEVVCGTAICIQELKNSILQ-----N 193
Query: 238 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQV----- 292
VKLL++DS+T+ E A+RQ +L H++ L YE+ VTNQV
Sbjct: 194 QVKLLVIDSMTALLSGE---NKPGAQRQPQLGWHISFLK-----YEL---VTNQVRSQNR 242
Query: 293 --------QARPDAFFGDPTRPIGGHIL-------AHSATLRVYLRKGKGGKRVARLIDA 337
QA+ F D T+ H++ AH+ T+R+ L + K GKR+ ++ +
Sbjct: 243 DETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVTIRLVL-EAKSGKRIIKVAKS 301
Query: 338 PHLPEGEAVFRITEKGI 354
P P F IT GI
Sbjct: 302 PMSPPLAFPFHITSAGI 318
>gi|6320207 RecA homolog (similar to DMC1, RAD51, and RAD55), interacts with
Rad 55p by two-hybrid analysis; Rad57p [Saccharomyces
cerevisiae] >gi|131784|sp|P25301|RA57_YEAST DNA REPAIR
PROTEIN RAD57 >gi|83450|pir||JQ1275 RAD57 protein -
yeast (Saccharomyces cerevisiae)
>gi|172345|gb|AAA34950.1| (M65061) DNA repair protein
[Saccharomyces cerevisiae] >gi|642809|emb|CAA88064.1|
(Z48008) Rad57p [Saccharomyces cerevisiae]
Length = 460
Score = 87.0 bits (212), Expect = 3e-16
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 121 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 180
+T ++D+LLGGGI T ITE+FGE +GK+QL LA+ VQL GGL G ++I T
Sbjct: 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITT 160
Query: 181 ENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ--AEDKIKELLNTDK- 237
E +R+ + +R P I + F + L+ Q+ ++ LL K
Sbjct: 161 EGDLPTQRLESMLSSR---PAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKG 217
Query: 238 PVKLLIVDSLTSHFRSEYIGRGALAERQQK--LAKHLADLHRLANLYEIAVFVTNQVQAR 295
+KL+I+DS++ H R E + ++ K L + L LA+ Y ++V V NQV +
Sbjct: 218 SIKLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDK 277
Query: 296 P 296
P
Sbjct: 278 P 278
>pir||T43507 DNA repair protein rhp57 - fission yeast (Schizosaccharomyces
pombe) >gi|5821322|dbj|BAA83768.1| (AB024744) DNA repair
protein Rhp57 [Schizosaccharomyces pombe]
Length = 354
Score = 86.6 bits (211), Expect = 4e-16
Identities = 62/195 (31%), Positives = 102/195 (51%), Gaps = 23/195 (11%)
Query: 120 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 179
++TG LD+ L GGI +TE+ GE GSGK+Q L +MVQLP GG+N + ++I
Sbjct: 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFIS 134
Query: 180 TENTFRPERIREIAK------NRGLDPDEVLKH----IYVARAFNSNHQMLLVQQAEDKI 229
TE+ +R+ E+A+ + D ++K+ +Y + Q ++Q ++
Sbjct: 135 TESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQEHIIQY---QL 191
Query: 230 KELLNTDKPVKLLIVDSLTSHFRSE---------YIGRGALAERQQKLAKHLADLHRLAN 280
L N DK + L+I+DS+ S++R+E + +A+R +L K L LA+
Sbjct: 192 PILFNRDK-IGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMTLRTLAH 250
Query: 281 LYEIAVFVTNQVQAR 295
+E AV + NQV R
Sbjct: 251 QHEAAVVIANQVSDR 265
>gb|AAC42663.1| (AF069531) spindle B [Drosophila melanogaster]
>gi|7299874|gb|AAF55050.1| (AE003704) spn-B gene product
[Drosophila melanogaster]
Length = 341
Score = 84.3 bits (205), Expect = 2e-15
Identities = 77/250 (30%), Positives = 119/250 (46%), Gaps = 27/250 (10%)
Query: 119 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI 178
R+S G +LD+ GGG+ T+ ITE+ G G GKTQL L++ VQLP E GGL V +I
Sbjct: 87 RVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYI 146
Query: 179 DTENTFRPERIREIAKN-RGLDPDEVLKHIYVARAFNSNH--QMLLVQQAEDKIKELLNT 235
TE++F R+ +++K P+ L ++ F NH L+ ++I L+
Sbjct: 147 CTESSFPARRLLQMSKACEKRHPEMELN--FLGNIFVENHIEAEPLLACVINRIPRLMQ- 203
Query: 236 DKPVKLLIVDSLTSHFR--SEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQ 293
+ L+I+DS+ + FR ++Y+ R A ++LA L A+ Y AV NQV
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLER---ARHMRRLADALLS---YADKYNCAVVCVNQVA 257
Query: 294 ARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVA---------RLIDAPHLPEGE 344
R G P G AH R+ + + R+ ++ +P P
Sbjct: 258 TRD----GQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPNDF 313
Query: 345 AVFRITEKGI 354
A F IT +G+
Sbjct: 314 AEFLITAEGV 323
>sp|O75771|R51D_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 4 (R51H3) (TRAD)
>gi|3292970|emb|CAA75681.1| (Y15572) R51H3 [Homo
sapiens]
Length = 328
Score = 81.9 bits (199), Expect = 1e-14
Identities = 79/305 (25%), Positives = 139/305 (44%), Gaps = 19/305 (6%)
Query: 48 PGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRA 107
PG+ + LR T+ + A E+ + G+S A + + + + A
Sbjct: 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGA 69
Query: 108 DEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 167
D Y + + S +STG SLDKLL G+ T +TE+ G GSGKTQ+ +A V
Sbjct: 70 DLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV----- 124
Query: 168 EGGLNGSVIWIDTENTFRPERIREIAKNRGLDPD---EVLKHIYVARAFNSNHQMLLVQQ 224
GL +V+++D+ R+ ++ + + D + E L+ I V AF+ + ++Q+
Sbjct: 125 AHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQE 184
Query: 225 AEDKI-KELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYE 283
+ +++ + VK+++VDS+T+ S +G G E + + +L LA
Sbjct: 185 LRGTVAQQVTGSSGTVKVVVVDSVTA-VVSPLLG-GQQREGLALMMQLARELKTLARDLG 242
Query: 284 IAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYL-----RKGKGGKRVARLIDAP 338
+AV VTN + D+ +P G + + R+ L GG+R+A L +
Sbjct: 243 MAVVVTNHITRDRDS---GRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSS 299
Query: 339 HLPEG 343
P G
Sbjct: 300 RQPTG 304
>dbj|BAA25914.1| (AB013341) Trad [Homo sapiens]
Length = 328
Score = 81.5 bits (198), Expect = 1e-14
Identities = 79/305 (25%), Positives = 139/305 (44%), Gaps = 19/305 (6%)
Query: 48 PGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRA 107
PG+ + LR T+ + A E+ + G+S A + + + + A
Sbjct: 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGA 69
Query: 108 DEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 167
D Y + + S +STG SLDKLL G+ T +TE+ G GSGKTQ+ +A V
Sbjct: 70 DLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV----- 124
Query: 168 EGGLNGSVIWIDTENTFRPERIREIAKNRGLDPD---EVLKHIYVARAFNSNHQMLLVQQ 224
GL +V+++D+ R+ ++ + + D + E L+ I V AF+ + ++Q+
Sbjct: 125 AHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALQRIQVVHAFDIFQMLDVLQE 184
Query: 225 AEDKI-KELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYE 283
+ +++ + VK+++VDS+T+ S +G G E + + +L LA
Sbjct: 185 LRGTVAQQVTGSSGTVKVVVVDSVTA-VVSPLLG-GQQREGLALMMQLARELKTLARDLG 242
Query: 284 IAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYL-----RKGKGGKRVARLIDAP 338
+AV VTN + D+ +P G + + R+ L GG+R+A L +
Sbjct: 243 MAVVVTNHITRDRDS---GRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSS 299
Query: 339 HLPEG 343
P G
Sbjct: 300 RQPTG 304
>sp|O50248|R51L_METMP PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|2665476|gb|AAB88382.1|
(AF034787) DNA repair protein [Methanococcus
maripaludis]
Length = 216
Score = 80.0 bits (194), Expect = 4e-14
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 25/231 (10%)
Query: 127 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 186
L++LL G IE + IT+++G G GKT + ++ L E G N V++IDTE +
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKT----NICIISMLKAIENGKN--VVYIDTEGSLSI 55
Query: 187 ERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDS 246
ERI++++ G D DE+LK+I + + Q +A +KI L N V L+I+D
Sbjct: 56 ERIKQLS---GKDCDELLKNIIIYEPSSFEEQ----SEALEKIFLLEN----VGLIIIDG 104
Query: 247 LTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTR 305
+ S +R E + + + L K +++L +++ + +TNQV+ D+ G
Sbjct: 105 IVSLYRLELCDKINENTKLNRMLGKQISNLLKVSRQKNSGILITNQVK---DSING--IE 159
Query: 306 PIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV-FRITEKGIE 355
P GG +L + + + + K + +++ L H EGE + F+I + G+E
Sbjct: 160 PAGGRLLEYWSKSIIKIEKSESIRKLT-LEKHRHAKEGENLRFKILQNGLE 209
>gi|6755278 RAD51 like 3 (S. cerevisiae) [Mus musculus]
>gi|7388045|sp|O55230|R51D_MOUSE DNA REPAIR PROTEIN
RAD51 HOMOLOG 4 >gi|2696715|dbj|BAA24010.1| (AB007040)
Trad [Mus musculus] >gi|2920580|gb|AAC40093.1|
(AF034955) RAD51D [Mus musculus]
>gi|3005974|emb|CAA75679.1| (Y15570) R51H3 [Mus
musculus]
Length = 329
Score = 79.6 bits (193), Expect = 5e-14
Identities = 82/306 (26%), Positives = 137/306 (43%), Gaps = 20/306 (6%)
Query: 48 PGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRA 107
PG+ T + LR T+ +A A E+ + G+S A + + + + A
Sbjct: 10 PGLTEETVQLLRGRKIKTVADLAAADLEEVAQKCGLSYKALVALRRVLLAQFSAFPLNGA 69
Query: 108 DEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 167
D Y + + S +STG SLDKLL G+ T +TE+ G GSGKTQ+ +A V
Sbjct: 70 DLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANV----- 124
Query: 168 EGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDE---VLKHIYVARAFNSNHQMLLVQQ 224
L +V+++D+ R+ ++ + R D ++ L+ I V R+F+ + ++Q
Sbjct: 125 AHSLQQNVLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQD 184
Query: 225 AEDKIKELLNTDK-PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYE 283
I + T VK++IVDS+T+ + +G G E + + +L LA
Sbjct: 185 LRGTIAQQEATSSGAVKVVIVDSVTA-VVAPLLG-GQQREGLALMMQLARELKILARDLG 242
Query: 284 IAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKG------GKRVARLIDA 337
+AV VTN + D G +P G + + R+ L +G +R L +
Sbjct: 243 VAVVVTNHLTRDWD---GRRFKPALGRSWSFVPSTRILLDVTEGAGTLGSSQRTVCLTKS 299
Query: 338 PHLPEG 343
P P G
Sbjct: 300 PRQPTG 305
>emb|CAC12165.1| (AL445066) DNA repair protein RAD51 related protein [Thermoplasma
acidophilum]
Length = 245
Score = 79.6 bits (193), Expect = 5e-14
Identities = 67/245 (27%), Positives = 118/245 (47%), Gaps = 30/245 (12%)
Query: 114 RESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG 173
++ + RI TG +D LL GG+E ITE+FGE GSGKT + ++ GL
Sbjct: 23 QQGVRRIQTGVGCIDALLNGGLEGGIITEIFGEGGSGKT----NICMIASCSAMSQGL-- 76
Query: 174 SVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELL 233
VI+ID+E PER + ++ + + R ++ + Q + + +A ++
Sbjct: 77 KVIYIDSEG-LSPERFLAVCRSD-------ISMFKLFRVYSLDDQEVAIMKA----SKMA 124
Query: 234 NTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA---KHLADLHRLANLYEIAVFVTN 290
+ D+ + ++++DS + FR E +RQ ++A + L+ L +A I V +TN
Sbjct: 125 DRDQKIGMIVLDSFSEFFRLE-----KSDDRQARIAEFQRQLSLLSSVAAKKNIPVLITN 179
Query: 291 QVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEG-EAVFRI 349
Q+ D P GG ++ H+ + + K G+R + + EG A+FRI
Sbjct: 180 QIYQDID---NGTLLPFGGFLVDHAMKAILRIEKMPDGRRRITVTKHRSVREGVSAMFRI 236
Query: 350 TEKGI 354
T+ G+
Sbjct: 237 TDDGV 241
>sp|Q57702|R51L_METJA PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|2127859|pir||G64331 DNA
repair protein RAD51 - Methanococcus jannaschii
>gi|1590984|gb|AAB98241.1| (U67480) DNA repair protein
REC [Methanococcus jannaschii]
Length = 212
Score = 77.3 bits (187), Expect = 3e-13
Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 27/232 (11%)
Query: 127 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 186
L ++L G E IT+++G G GKT + ++ +G VI+IDTE
Sbjct: 2 LKEILLGNAEKGIITQIYGPPGVGKTNICIINSI-------NAVNSGKVIYIDTEGGLSI 54
Query: 187 ERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDS 246
ERI++IA N + VL+++ + AF+ Q ++Q KEL L++VD+
Sbjct: 55 ERIKQIASN---NYKIVLENMIIYNAFDFYEQDKIIQ------KELPLITNNASLIVVDN 105
Query: 247 LTSHFR---SEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDP 303
+TS +R S+ + + + L + L +LA +AV +TNQV+ + F
Sbjct: 106 ITSLYRLELSDEANKNIMLNKM--LGNQVKTLLKLAKTNNLAVIITNQVRETVNGF---- 159
Query: 304 TRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIE 355
GG +L + + V L K G R+A L H E FRI E+GIE
Sbjct: 160 -EASGGRLLEYWSKCIVRLEK-LNGDRLAILEKHLHAGEERVKFRIVERGIE 209
>sp|O27728|R51L_METTH PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|7429107|pir||D69093 DNA
repair protein Rad51 homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622824|gb|AAB86165.1| (AE000927) DNA repair protein
Rad51 homolog [Methanobacterium thermoautotrophicum]
Length = 234
Score = 76.5 bits (185), Expect = 4e-13
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 21/249 (8%)
Query: 111 LKKRESIG---RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 167
+KK +G RI T S S+D++LGGG+E + IT+ +G GSGKT + LAV E
Sbjct: 1 MKKLRDMGENRRIPTES-SIDRILGGGVERRTITQFYGPPGSGKTNITIKLAV------E 53
Query: 168 EGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAED 227
+ ++IDTE ERIR+++ G D V I V + Q +Q+
Sbjct: 54 TARRGKNTVFIDTEGGLSVERIRQVS---GDIFDRVADSIIVFEPSSFTEQGEALQRTFS 110
Query: 228 KIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVF 287
+K L+++DS + +R + G + L + + L ++A +++A
Sbjct: 111 FLK---THGDSTDLVVLDSAVALYR---LKEGNASSFNLDLGRQMFLLLQMARRFDLAAV 164
Query: 288 VTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKG-KGGKRVARLIDAPHLPEGEAV 346
+TNQ+ + + P+GG +L + + + V L G + G+R A L + EG V
Sbjct: 165 ITNQIYSITGDDGREYVSPVGGTLLRYWSKVMVELEMGERPGERFAVLRRHRNRLEGSRV 224
Query: 347 -FRITEKGI 354
FRI GI
Sbjct: 225 GFRIVADGI 233
>sp|Q9PR61|RECA_UREPA RECA PROTEIN (RECOMBINASE A) >gi|11277981|pir||C82935 recombination
protein UU084 [imported] - Ureaplasma urealyticum
>gi|6899036|gb|AAF30489.1|AE002108_2 (AE002108)
recombination protein [Ureaplasma urealyticum]
Length = 334
Score = 73.7 bits (178), Expect = 3e-12
Identities = 65/227 (28%), Positives = 109/227 (47%), Gaps = 29/227 (12%)
Query: 103 TFMRADEYLKKRESIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVM 161
++ ADE K E I ISTGS +D++ G GI ITE++G SGKT +A
Sbjct: 24 SYFIADEI--KDEKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIA------ 75
Query: 162 VQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLL 221
+Q E G+V+ +D E +F +I + L D L + + +
Sbjct: 76 LQTIAECQKTGGTVVLLDLEGSF------DINYAKSLKVD--LTKLIITQPQTG------ 121
Query: 222 VQQAEDKIKELLNTDKPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHR 277
+QA D I+ L+ T+ + L+++DS+ + SEY + + + ++K L +
Sbjct: 122 -EQAFDMIETLIKTNS-IDLIVIDSVAAMLPESEYQANMNEALMGAHARLMSKGLRKIQP 179
Query: 278 LANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 324
L N + A+ NQ++ + + FFG+P GG L A+LR+ +K
Sbjct: 180 LINKSKTAIIFINQLREKINTFFGNPEMTTGGKALKFYASLRIETKK 226
>gi|11425563 RAD51 (S. cerevisiae)-like 3 [Homo sapiens]
Length = 289
Score = 69.9 bits (168), Expect = 4e-11
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 125 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 184
KSLDKLL G+ T +TE+ G GSGKTQ+ +A V GL +V+++D+
Sbjct: 48 KSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AHGLQQNVLYVDSNGGL 102
Query: 185 RPERIREIAKNRGLDPD---EVLKHIYVARAFNSNHQMLLVQQAEDKI-KELLNTDKPVK 240
R+ ++ + + D + E L+ I V AF+ + ++Q+ + +++ + VK
Sbjct: 103 TASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVK 162
Query: 241 LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFF 300
+++VDS+T+ S +G G E + + +L LA +AV VTN + D+
Sbjct: 163 VVVVDSVTA-VVSPLLG-GQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDS-- 218
Query: 301 GDPTRPIGGHILAHSATLRVYL-----RKGKGGKRVARLIDAPHLPEG 343
+P G + + R+ L GG+R+A L + P G
Sbjct: 219 -GRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTG 265
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.135 0.371
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126956829
Number of Sequences: 2977
Number of extensions: 5366245
Number of successful extensions: 19965
Number of sequences better than 1.0e-10: 145
Number of HSP's better than 0.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 19567
Number of HSP's gapped (non-prelim): 152
length of query: 356
length of database: 189,106,746
effective HSP length: 60
effective length of query: 296
effective length of database: 153,197,526
effective search space: 45346467696
effective search space used: 45346467696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 165 (68.7 bits)