BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0165 (PAB0165) DE:METHYLTRANSFERASE RELATED PROTEIN
         (248 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75214 methyltransferase related protein PAB0165 - Pyrococc...   504  e-142
pir||C71451 hypothetical protein PH0266 - Pyrococcus horikoshii ...   363  1e-99
sp|Q60354|Y046_METJA HYPOTHETICAL PROTEIN MJ0046 >gi|2128097|pir...   183  1e-45

>pir||G75214 methyltransferase related protein PAB0165 - Pyrococcus abyssi
           (strain Orsay) >gi|5457675|emb|CAB49166.1| (AJ248283)
           METHYLTRANSFERASE RELATED PROTEIN [Pyrococcus abyssi]
           Length = 248
           
 Score =  504 bits (1283), Expect = e-142
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MPSWKDGKLGLPIRDALQIFPELREYVDEKGRLDFSNRRARILYNKAIAKAIFGLDIEYH 60
           MPSWKDGKLGLPIRDALQIFPELREYVDEKGRLDFSNRRARILYNKAIAKAIFGLDIEYH
Sbjct: 1   MPSWKDGKLGLPIRDALQIFPELREYVDEKGRLDFSNRRARILYNKAIAKAIFGLDIEYH 60

Query: 61  PRGLVTTPISRYIFLKTFLRGGERVLEIGTGHTAMMALMAAKIFNCEVTATEIDEEFFTY 120
           PRGLVTTPISRYIFLKTFLRGGERVLEIGTGHTAMMALMAAKIFNCEVTATEIDEEFFTY
Sbjct: 61  PRGLVTTPISRYIFLKTFLRGGERVLEIGTGHTAMMALMAAKIFNCEVTATEIDEEFFTY 120

Query: 121 AKDNIERNGAKVRLIKSNGGIIRDVIPEGEKFDVIFSAPPYYDKPTRGVLTYREGVGGGK 180
           AKDNIERNGAKVRLIKSNGGIIRDVIPEGEKFDVIFSAPPYYDKPTRGVLTYREGVGGGK
Sbjct: 121 AKDNIERNGAKVRLIKSNGGIIRDVIPEGEKFDVIFSAPPYYDKPTRGVLTYREGVGGGK 180

Query: 181 YGERFSIKLLKEAYDYLSKDGKVALFLPDKEPLIVVVAEKGKEIGYLVRDVRFKVGTRWR 240
           YGERFSIKLLKEAYDYLSKDGKVALFLPDKEPLIVVVAEKGKEIGYLVRDVRFKVGTRWR
Sbjct: 181 YGERFSIKLLKEAYDYLSKDGKVALFLPDKEPLIVVVAEKGKEIGYLVRDVRFKVGTRWR 240

Query: 241 HSLIFLRA 248
           HSLIFLRA
Sbjct: 241 HSLIFLRA 248


>pir||C71451 hypothetical protein PH0266 - Pyrococcus horikoshii
           >gi|3256655|dbj|BAA29338.1| (AP000001) 247aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 247
           
 Score =  363 bits (922), Expect = 1e-99
 Identities = 170/244 (69%), Positives = 208/244 (84%)

Query: 1   MPSWKDGKLGLPIRDALQIFPELREYVDEKGRLDFSNRRARILYNKAIAKAIFGLDIEYH 60
           M  W+DGKLGLPI++A+++FPEL+ ++DEKGRLDFSNR ARILYNKA+AK +F LDIEYH
Sbjct: 1   MIKWRDGKLGLPIKEAVELFPELKNFLDEKGRLDFSNREARILYNKAVAKVLFDLDIEYH 60

Query: 61  PRGLVTTPISRYIFLKTFLRGGERVLEIGTGHTAMMALMAAKIFNCEVTATEIDEEFFTY 120
           P+GLVT PISRYIFLKTFLRGGE+VLEIGTGHTA+M+L+A K+F C+VTATE+D EF++Y
Sbjct: 61  PKGLVTPPISRYIFLKTFLRGGEKVLEIGTGHTALMSLIAEKVFKCDVTATELDNEFYSY 120

Query: 121 AKDNIERNGAKVRLIKSNGGIIRDVIPEGEKFDVIFSAPPYYDKPTRGVLTYREGVGGGK 180
           AK NI RN ++++L+KS+GGIIR V+P GE+FDVIFSAPPYY+K + GVLT RE +GGGK
Sbjct: 121 AKLNIARNNSRIKLLKSSGGIIRGVVPRGERFDVIFSAPPYYEKHSGGVLTEREALGGGK 180

Query: 181 YGERFSIKLLKEAYDYLSKDGKVALFLPDKEPLIVVVAEKGKEIGYLVRDVRFKVGTRWR 240
           +GE FSIKLL EA DYL+  GKVALFLP K  L+  +  KG  +GY VRD+ FKVGTR R
Sbjct: 181 FGEEFSIKLLNEALDYLNAGGKVALFLPHKRDLLNAIKMKGIRLGYEVRDILFKVGTRKR 240

Query: 241 HSLI 244
           HSLI
Sbjct: 241 HSLI 244


>sp|Q60354|Y046_METJA HYPOTHETICAL PROTEIN MJ0046 >gi|2128097|pir||F64305 hypothetical
           protein MJ0046 - Methanococcus jannaschii
           >gi|1590844|gb|AAB98026.1| (U67462) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 261
           
 Score =  183 bits (461), Expect = 1e-45
 Identities = 105/253 (41%), Positives = 158/253 (61%), Gaps = 20/253 (7%)

Query: 9   LGLPIRDALQIFPELREYVDEKG---RLDFSNRRARILYNKAIAKAIFGLDIEYHPRGLV 65
           LGL I DA++   +L++YV +KG   R++F ++ A I YNK + K +F LDIE+H  GL+
Sbjct: 2   LGLKIEDAIKYNEKLKKYVYKKGDKLRINFKDKEALIEYNKTVLKVLFDLDIEFHKNGLI 61

Query: 66  TTPISRYIFLKTFLR-----GGER--VLEIGTGHTAMMALMAAKIFNCEVTATEIDEEFF 118
            TPI+RY+F+K+        G E+  VLEIGTGH+A+++L+  K +N EV ATE+DEEF 
Sbjct: 62  PTPINRYLFIKSTFETLKELGIEKPTVLEIGTGHSAIISLLIKKFYNAEVYATEVDEEFI 121

Query: 119 TYAKDNIERNGAKVRLIKSNGGIIRDVIP-EGEKFDVIFSAPPYYDKPT-------RGVL 170
            +AK NIE+N   +++I S G  I  +   + +KFD+I S PP+Y K +        G L
Sbjct: 122 DFAKRNIEKNKLDIKIINSKGRAIEGIEELKDKKFDLIISYPPFYSKNSVASGRKFGGAL 181

Query: 171 TYR-EGVGGGKYGERFSIKLLKEAYDYLSKDGKVALFLPDK-EPLIVVVAEKGKEIGYLV 228
               E +GGGK+GE FS K+++E  ++L+K G ++L +P K E    ++ +K KE+G  V
Sbjct: 182 AKNVELIGGGKFGEEFSFKIIEEGINFLNKKGVISLMMPKKPEKRRELIIKKMKEVGLDV 241

Query: 229 RDVRFKVGTRWRH 241
                K G R R+
Sbjct: 242 EVDEIKTGNRLRY 254


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.144    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96881827
Number of Sequences: 2977
Number of extensions: 4168317
Number of successful extensions: 8896
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8889
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 189,106,746
effective HSP length: 52
effective length of query: 196
effective length of database: 157,985,422
effective search space: 30965142712
effective search space used: 30965142712
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)