BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0172 (PAB0172) DE:CONSERVED HYPOTHETICAL PROTEIN
(210 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75215 conserved hypothetical protein PAB0172 - Pyrococcus ... 421 e-117
pir||E71452 hypothetical protein PH0276 - Pyrococcus horikoshii ... 328 2e-89
sp|Q58102|Y690_METJA HYPOTHETICAL PROTEIN MJ0690 >gi|2128444|pir... 193 2e-48
pir||F69082 conserved hypothetical protein MTH1614 - Methanobact... 154 6e-37
gb|AAG20176.1| (AE005094) Vng2006c [Halobacterium sp. NRC-1] 146 2e-34
>pir||H75215 conserved hypothetical protein PAB0172 - Pyrococcus abyssi (strain
Orsay) >gi|5457684|emb|CAB49175.1| (AJ248283) CONSERVED
HYPOTHETICAL PROTEIN [Pyrococcus abyssi]
Length = 210
Score = 421 bits (1070), Expect = e-117
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MSMRVYHLFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVE 60
MSMRVYHLFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVE
Sbjct: 1 MSMRVYHLFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVE 60
Query: 61 LPRNILENAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRK 120
LPRNILENAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRK
Sbjct: 61 LPRNILENAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRK 120
Query: 121 ARSLEDRFNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGV 180
ARSLEDRFNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGV
Sbjct: 121 ARSLEDRFNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGV 180
Query: 181 DPLQIFPKRHVQSRVIGLKMKMMSSAGPEE 210
DPLQIFPKRHVQSRVIGLKMKMMSSAGPEE
Sbjct: 181 DPLQIFPKRHVQSRVIGLKMKMMSSAGPEE 210
>pir||E71452 hypothetical protein PH0276 - Pyrococcus horikoshii
>gi|3256665|dbj|BAA29348.1| (AP000001) 206aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 206
Score = 328 bits (833), Expect = 2e-89
Identities = 155/195 (79%), Positives = 175/195 (89%)
Query: 5 VYHLFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVELPRN 64
VYHLFSGGKDSSLAAWIL KLGYEV LV +TFGVLDNWKYA+ETA ILGFEHEVV LPR
Sbjct: 5 VYHLFSGGKDSSLAAWILRKLGYEVRLVTITFGVLDNWKYAKETADILGFEHEVVRLPRE 64
Query: 65 ILENAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRKARSL 124
+L AV MC+EDG+P RAIQ++HE ALEY+ASR V+RISDGTRRDDKVPFLD+RKARSL
Sbjct: 65 LLNMAVEMCIEDGKPGRAIQFLHEKALEYVASRSYVKRISDGTRRDDKVPFLDLRKARSL 124
Query: 125 EDRFNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGVDPLQ 184
EDRFNVAYIRPLLGLGYKTIREL N IF++EERESEK+EKGDYE ELRYML+ +G++P
Sbjct: 125 EDRFNVAYIRPLLGLGYKTIRELANSIFVIEERESEKLEKGDYEAELRYMLRERGINPKT 184
Query: 185 IFPKRHVQSRVIGLK 199
IFP RH+QSRV+G+K
Sbjct: 185 IFPSRHMQSRVVGIK 199
>sp|Q58102|Y690_METJA HYPOTHETICAL PROTEIN MJ0690 >gi|2128444|pir||B64386 hypothetical
protein MJ0690 - Methanococcus jannaschii
>gi|1591405|gb|AAB98685.1| (U67516) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 200
Score = 193 bits (485), Expect = 2e-48
Identities = 100/200 (50%), Positives = 139/200 (69%), Gaps = 3/200 (1%)
Query: 3 MRVYHLFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVELP 62
M V+ LFSGGKDSSL+A IL KLGY L+ + FGV+ ++K A ETAKILGF+H+V+ L
Sbjct: 4 MDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLD 63
Query: 63 RNILENAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRKAR 122
R I+E A +M +E P AIQY+H+ LE +A + ++DGTRRDD+VP L + +
Sbjct: 64 RKIVEKAADMIIEHKYPGPAIQYVHKTVLEILADEYSI--LADGTRRDDRVPKLSYSEIQ 121
Query: 123 SLEDRFNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGVDP 182
SLE R N+ YI PL+G GYKT+R L ++ FI+EE +S DYE E+R++LK +G P
Sbjct: 122 SLEMRKNIQYITPLMGFGYKTLRHLASEFFILEEIKSGTKLSSDYEAEIRHILKERGESP 181
Query: 183 LQIFPKRHVQSRVIGLKMKM 202
+ FP+ H Q+RV+GLK ++
Sbjct: 182 EKYFPE-HKQTRVVGLKKEI 200
>pir||F69082 conserved hypothetical protein MTH1614 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622739|gb|AAB86087.1| (AE000920) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 201
Score = 154 bits (386), Expect = 6e-37
Identities = 86/199 (43%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
Query: 8 LFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVELPRNILE 67
L+SGGKDSSLAA +L +LG + LV V FG+ D+WK A + A LGF H V++L IL
Sbjct: 6 LYSGGKDSSLAAVMLQRLGIQPELVTVNFGIHDSWKPASDAAASLGFPHRVLKLGDEILR 65
Query: 68 NAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRKARSLEDR 127
+A + DG P I++IH MA+E A+ D+ ++DGTRRDD+ P L + +SLEDR
Sbjct: 66 DAAETIINDGFPNNGIKHIHRMAVEAAATEYDM--VADGTRRDDRTPKLTRDEIQSLEDR 123
Query: 128 FNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGVDPLQIFP 187
N+ Y+ L GLG++T+ L + +F + S DYEVE+R +L+ G FP
Sbjct: 124 LNIEYVN-LDGLGHRTVNRLASMLFSLRRERSSIDNSSDYEVEVRLLLEEMGHSSESFFP 182
Query: 188 KRHVQSRVIGLKMKMMSSA 206
H Q+RV G KM A
Sbjct: 183 V-HFQTRVTGWNTKMKEDA 200
>gb|AAG20176.1| (AE005094) Vng2006c [Halobacterium sp. NRC-1]
Length = 196
Score = 146 bits (365), Expect = 2e-34
Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 6/194 (3%)
Query: 8 LFSGGKDSSLAAWILSKLGYEVTLVMVTFGVLDNWKYARETAKILGFEHEVVELPRNILE 67
L+SGGKDS+LAA +L + Y++TLV V FG+ D +AR A F+ E ++L R + +
Sbjct: 6 LYSGGKDSTLAALVLDRF-YDITLVTVHFGITDEHAHARAAAAETDFDFEALQLDRGVAD 64
Query: 68 NAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLDIRKARSLEDR 127
+AV + +EDG P IQ++HE ALE +A R D ++DGTRRDD+VP + A+SLEDR
Sbjct: 65 DAVALMVEDGYPRNGIQHVHEHALEAVAERFDA--VADGTRRDDRVPTVSRAHAQSLEDR 122
Query: 128 FNVAYIRPLLGLGYKTIRELVNKIFIVEERESEKIEKGDYEVELRYMLKLKGVDPL--QI 185
V Y+ PL G G I LV VE SE+I + DYE ELR +L D +
Sbjct: 123 HGVDYVSPLSGFGRGAIDRLVAAELDVETGPSEEIPRADYEAELRALLAADRDDTAISDV 182
Query: 186 FPKRHVQSRVIGLK 199
FP+ H Q+ V GL+
Sbjct: 183 FPE-HDQTYVHGLR 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73192390
Number of Sequences: 2977
Number of extensions: 2845048
Number of successful extensions: 7406
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7396
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 189,106,746
effective HSP length: 55
effective length of query: 155
effective length of database: 156,189,961
effective search space: 24209443955
effective search space used: 24209443955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)