BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0175 (folp) DE:DIHYDROPTEROATE SYNTHASE
(504 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75216 dihydropteroate synthase PAB0175 - Pyrococcus abyssi... 988 0.0
pir||A71453 hypothetical protein PH0280 - Pyrococcus horikoshii ... 796 0.0
pir||H69099 conserved hypothetical protein MTH1741 - Methanobact... 285 9e-76
sp|Q57571|Y107_METJA HYPOTHETICAL PROTEIN MJ0107 >gi|2128129|pir... 274 1e-72
gi|11499009 dihydropteroate synthase [Archaeoglobus fulgidus] >g... 234 2e-60
gb|AAK42562.1| Dihydropteroate synthase, putative [Sulfolobus so... 167 2e-40
pir||E72474 hypothetical protein APE2438 - Aeropyrum pernix (str... 115 9e-25
>pir||C75216 dihydropteroate synthase PAB0175 - Pyrococcus abyssi (strain Orsay)
>gi|5457687|emb|CAB49178.1| (AJ248283) DIHYDROPTEROATE
SYNTHASE [Pyrococcus abyssi]
Length = 504
Score = 988 bits (2526), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MKILLVTGRLAEPLVRKYGKGCDVFVAPVTVAAFLTPRMIADFLEKAGVKGYDMILIPGL 60
MKILLVTGRLAEPLVRKYGKGCDVFVAPVTVAAFLTPRMIADFLEKAGVKGYDMILIPGL
Sbjct: 1 MKILLVTGRLAEPLVRKYGKGCDVFVAPVTVAAFLTPRMIADFLEKAGVKGYDMILIPGL 60
Query: 61 VRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDSLKKVRDI 120
VRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDSLKKVRDI
Sbjct: 61 VRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDSLKKVRDI 120
Query: 121 RNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEIKKRAEYYLGE 180
RNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEIKKRAEYYLGE
Sbjct: 121 RNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEIKKRAEYYLGE 180
Query: 181 GADIIDLGMISGETNLEFIETIPELKEMIDAPISLDSLNTKELERGLEFVDMVLSVDWGN 240
GADIIDLGMISGETNLEFIETIPELKEMIDAPISLDSLNTKELERGLEFVDMVLSVDWGN
Sbjct: 181 GADIIDLGMISGETNLEFIETIPELKEMIDAPISLDSLNTKELERGLEFVDMVLSVDWGN 240
Query: 241 VEELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYKRIIVDPILEHYPNF 300
VEELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYKRIIVDPILEHYPNF
Sbjct: 241 VEELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYKRIIVDPILEHYPNF 300
Query: 301 SRSLVAFYLYRSRNERDVMLAGVGNVTEMMDADSPGINALLASISSELKLSLLLTTEVSR 360
SRSLVAFYLYRSRNERDVMLAGVGNVTEMMDADSPGINALLASISSELKLSLLLTTEVSR
Sbjct: 301 SRSLVAFYLYRSRNERDVMLAGVGNVTEMMDADSPGINALLASISSELKLSLLLTTEVSR 360
Query: 361 KCVGSIRELRRGIDMTLLGGVKDVGLDLLILKEKRPKSVKFEVSRNLIKARRKDVKLEKI 420
KCVGSIRELRRGIDMTLLGGVKDVGLDLLILKEKRPKSVKFEVSRNLIKARRKDVKLEKI
Sbjct: 361 KCVGSIRELRRGIDMTLLGGVKDVGLDLLILKEKRPKSVKFEVSRNLIKARRKDVKLEKI 420
Query: 421 YFRIFTDKDEIYVNAYRGTELVMTIVGSEPNEIIDTILEMFNISPRHAFYLGRELEKAFT 480
YFRIFTDKDEIYVNAYRGTELVMTIVGSEPNEIIDTILEMFNISPRHAFYLGRELEKAFT
Sbjct: 421 YFRIFTDKDEIYVNAYRGTELVMTIVGSEPNEIIDTILEMFNISPRHAFYLGRELEKAFT 480
Query: 481 AIKLRKSYVQEGGLFTDFYSQKSL 504
AIKLRKSYVQEGGLFTDFYSQKSL
Sbjct: 481 AIKLRKSYVQEGGLFTDFYSQKSL 504
>pir||A71453 hypothetical protein PH0280 - Pyrococcus horikoshii
>gi|3256669|dbj|BAA29352.1| (AP000001) 508aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 508
Score = 796 bits (2034), Expect = 0.0
Identities = 385/504 (76%), Positives = 451/504 (89%), Gaps = 2/504 (0%)
Query: 1 MKILLVTGRLAEPLVRKYGKGCDVFVAPVTVAAFLTPRMIADFLEKAGVKGYDMILIPGL 60
MKILLVTG+LAEP+VRKYGKGCDVFV PVTVAAFLTPRMIADFLEKAGVKGYD+ILIPGL
Sbjct: 1 MKILLVTGKLAEPIVRKYGKGCDVFVTPVTVAAFLTPRMIADFLEKAGVKGYDIILIPGL 60
Query: 61 VRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDSLKKVRDI 120
VRGSTE+IEE+ GIPTFKGP+NA+DLP+VLKAIKQGFKLSK IPADELFSRD+L+KV DI
Sbjct: 61 VRGSTEIIEEKTGIPTFKGPKNAIDLPIVLKAIKQGFKLSKTIPADELFSRDALRKVEDI 120
Query: 121 RNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEIKKRAEYYLGE 180
RNKT+NKSY+ +ALKKPWN LVGSLPVG DFP RI+AEIVDAP+LS + K+A YYL E
Sbjct: 121 RNKTKNKSYIRKALKKPWNILVGSLPVGFDFPARIIAEIVDAPKLSLEGLVKKANYYLSE 180
Query: 181 GADIIDLGMISGETNLEFIETIPELKEMI--DAPISLDSLNTKELERGLEFVDMVLSVDW 238
GADI+D+GM++GETN++F++ IPE +E++ + PISLDSLN KELE GL+FVDM+LSVDW
Sbjct: 181 GADIVDIGMVAGETNVKFLDVIPEFREVLGREVPISLDSLNAKELEAGLDFVDMILSVDW 240
Query: 239 GNVEELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYKRIIVDPILEHYP 298
NVE+L+TDKPVVLIPTDMK G F NP++RVESLEKLKE A SLGYKRII D ILEHYP
Sbjct: 241 SNVEDLVTDKPVVLIPTDMKNGYFPLNPRDRVESLEKLKEKALSLGYKRIIADLILEHYP 300
Query: 299 NFSRSLVAFYLYRSRNERDVMLAGVGNVTEMMDADSPGINALLASISSELKLSLLLTTEV 358
FSRS+VAF LYR RN D+MLAGVGNVTEM DADSPGINALLA I+SEL++S+LLTTEV
Sbjct: 301 GFSRSIVAFSLYRDRNREDIMLAGVGNVTEMTDADSPGINALLAGIASELRISMLLTTEV 360
Query: 359 SRKCVGSIRELRRGIDMTLLGGVKDVGLDLLILKEKRPKSVKFEVSRNLIKARRKDVKLE 418
SRKC GSIRELRR IDMTLLGGVKDVGL+LL+LKEK+ K ++FE+S+N+++A+RK+VKLE
Sbjct: 361 SRKCTGSIRELRRAIDMTLLGGVKDVGLNLLLLKEKKDKGLRFEISKNIVEAKRKEVKLE 420
Query: 419 KIYFRIFTDKDEIYVNAYRGTELVMTIVGSEPNEIIDTILEMFNISPRHAFYLGRELEKA 478
YFRIF D +IYVNAY+G LV+TIVG+EPNEI+DTIL+ F++SPRHAFYLGRELEKA
Sbjct: 421 DTYFRIFVDNGKIYVNAYKGMNLVITIVGNEPNEIMDTILDYFSLSPRHAFYLGRELEKA 480
Query: 479 FTAIKLRKSYVQEGGLFTDFYSQK 502
+TA+KLR+SY QE LF DFY++K
Sbjct: 481 YTALKLRRSYAQEEELFRDFYTKK 504
>pir||H69099 conserved hypothetical protein MTH1741 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622873|gb|AAB86211.1| (AE000930) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 524
Score = 285 bits (721), Expect = 9e-76
Identities = 196/528 (37%), Positives = 290/528 (54%), Gaps = 43/528 (8%)
Query: 1 MKILLVTGRLAEPLVRKYGKGCD----VFVAPVTVAAFLTPRMIADFLEKAGVKGY---D 53
MK+L++TG+LA VR+ + V VA +AAFLTPR I + K D
Sbjct: 1 MKVLIITGKLASETVREASSTSEHEVHVHVADTPIAAFLTPRRIISEIGKINFSDDGEPD 60
Query: 54 MILIPGLVRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDS 113
++++PGL+ +I ER GIP +KGP +A DLP+VL + + +LS E PAD+L +
Sbjct: 61 ILIVPGLIPKDVGIIGERTGIPAYKGPTDAADLPIVLDLLGE-LELSTEKPADKLIEEEQ 119
Query: 114 LKK----VRDIRNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAP-RLSPS 168
K+ + D N R + L++ N LVG LP G DFP R++AE+ +AP L
Sbjct: 120 RKRALQFIEDFENDQRR---ISTLLERDENILVGGLPTGRDFPMRVLAEVANAPILLEQG 176
Query: 169 EIKKRAEYYLGEGADIIDLGMISGETNLEFIETIPELKEMI--DAPISLDSLNTKELERG 226
+++R +Y++ GAD+IDLGM++GE N I I + P+S+DSLN E+E
Sbjct: 177 RLRERIDYFIRSGADMIDLGMLAGEDNSHLIPEIIRTARSAAGEVPVSVDSLNPPEIEAA 236
Query: 227 LEF-VDMVLSVDWGNVEELIT-----DKPVVLIPTDMKRGKFYSNPQERVESLEKLKELA 280
+E DM+LS+D GN E++ P V++PTD G +ERVE+L++LK
Sbjct: 237 VECGADMILSLDLGNYREVLPLLRKHGVPAVILPTDYSEGWVPETVEERVEALDELKRKC 296
Query: 281 TSLGYKRIIVDPILEHYPNFSRSLV----AFYLYRSRNERDVMLAGVGNVTEMMDADSPG 336
+ + +I DP+L+ P SRS+V A +Y RN D + GVGNVTE++D DS G
Sbjct: 297 SGID---VIADPVLD--PVNSRSIVDSVMACRMYAERNP-DPIFFGVGNVTELLDTDSTG 350
Query: 337 INALLASISSELKLSLLLTTEVSRKCVGSIRELRRGIDMTLL----GGV-KDVGLDLLIL 391
+NALLA EL +S+L T E S K GS+ EL M L G V KD+G++L++
Sbjct: 351 VNALLAGFGMELGVSILFTPEESGKARGSVYELSVASQMMFLARHRGSVPKDLGINLVLF 410
Query: 392 KEKRPK-SVKFEVSRNLIKAR--RKDVKLEKIYFRIFTDKDEIYVNAYRGTELVMTIVGS 448
K+KR V +V +I+A K V+ + F+I + +I Y+G E +
Sbjct: 411 KDKRRSGGVVEKVDVPVIEAEGGMKFVRDKMGSFKIMVEDGQIKAVLYQGMEPRTALTSD 470
Query: 449 EPNEIIDTILEMFNISP-RHAFYLGRELEKAFTAIKLRKSYVQEGGLF 495
++ + I+ +S HA YLG EL+KA A++ K YVQ+ LF
Sbjct: 471 SAKKLYEEIINRNLVSRLEHAAYLGAELQKAEIALRTGKDYVQDFELF 518
>sp|Q57571|Y107_METJA HYPOTHETICAL PROTEIN MJ0107 >gi|2128129|pir||C64313 conserved
hypothetical protein MJ0107 - Methanococcus jannaschii
>gi|1590884|gb|AAB98089.1| (U67468) dihydropteroate
synthase [Methanococcus jannaschii]
Length = 525
Score = 274 bits (694), Expect = 1e-72
Identities = 197/530 (37%), Positives = 297/530 (55%), Gaps = 45/530 (8%)
Query: 1 MKILLVTGRLAEPLVRKYGKG---CDVFVAPVTVAAFLTPRMIADFLEKAGVKG------ 51
MKIL++TG+LAE V+ K DV VA ++VAAFLTP +I ++K K
Sbjct: 5 MKILIITGKLAERKVKDAVKKYDFIDVHVANISVAAFLTPNLIIKEIKKLENKLGKKLKD 64
Query: 52 -YDMILIPGLVRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFS 110
YD +L+ GL+R + +EE GI FK R A D+P++++ + + KLS + AD
Sbjct: 65 IYDFVLVTGLIRHDLKNVEEETGIKCFKSTREASDIPILIENLDK-IKLSTKEYADLQLL 123
Query: 111 RDSLKKVRDIRNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEI 170
KK + K + E +K +G L VG FP R++ EIV AP L E+
Sbjct: 124 EIIRKKCEEEIKKAEEQELGEGDIK------IGKLKVGDKFPMRVLGEIVHAPWLKEKEL 177
Query: 171 KKRAEYYLGEGADIIDLGMISGETNLEFIETIPEL-KEMIDAPISLDSLNTKELERGLEF 229
+++ YYL GAD+IDLGM+S E N + I+ + ++ +++ D PIS+D+LNTKEL +
Sbjct: 178 EEKIIYYLESGADMIDLGMVSNENNADKIKDMLKIARDLTDNPISVDTLNTKELIEAINL 237
Query: 230 -VDMVLSVDWGNVEELI-----TDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSL 283
DM+LSVD GN++ELI ++ VV++PT+ K + +++SLE+ +
Sbjct: 238 GADMILSVDAGNLDELIPYLKDSETAVVVLPTNYKTNYVPETIEGKIKSLEENIKKLIDA 297
Query: 284 GYKRIIVDPILEHYPN----FSRSLVAFYLYRSRNERDVMLAGVGNVTEMMDADSPGINA 339
G ++I+ DPILE N F S++A ++ RN+ + GVGNVTE+ DADS G+NA
Sbjct: 298 GIEKIVADPILEPINNAGCSFIESVIACREFKKRNKLPLFF-GVGNVTELFDADSNGVNA 356
Query: 340 LLASISSELKLSLLLTTEVSRKCVGSIRELRRGIDMTLLGG-----VKDVGLDLLILKEK 394
LLA+I +E+ ++L T E S KC SI+EL+ M L KD+G +L+ K+K
Sbjct: 357 LLAAIGAEIGANILFTPEASAKCKFSIKELKIASKMMFLAKKRNSLPKDIGYNLINYKDK 416
Query: 395 R-PKSVKF-EVSRNLIKARRKDVK-LEKIYFRIFTDKDE-----IYVNAYRGTELVMTIV 446
R + + F + +IKA + + L++ F+I D+ IY N R E V+ I
Sbjct: 417 RFEEEITFNSYNIPIIKAEEDERQILDEGSFKIEIDRKNKEIVAIYFNKRR--EPVLIIR 474
Query: 447 GSEPNEIIDTILEMFNISP-RHAFYLGRELEKAFTAIKLRKSYVQEGGLF 495
G +P EI +T + + I HA Y GREL KA A+++ K Y Q+ LF
Sbjct: 475 GKKPKEIYETAIRLNLIKKLDHASYFGRELAKAEIALRIGKKYNQDFDLF 524
>gi|11499009 dihydropteroate synthase [Archaeoglobus fulgidus]
>gi|7450975|pir||E69426 dihydropteroate synthase homolog
- Archaeoglobus fulgidus >gi|2649158|gb|AAB89833.1|
(AE001006) dihydropteroate synthase [Archaeoglobus
fulgidus]
Length = 476
Score = 234 bits (590), Expect = 2e-60
Identities = 185/523 (35%), Positives = 275/523 (52%), Gaps = 69/523 (13%)
Query: 1 MKILLVTGRLAEPLVRKYGKGCDVFVAPVTVAAFLTPRMIADFLEKAGVKGYDMILIPGL 60
M++LLVTG+LAE +VRKYGKG DV V + +AAF+TP M LE GYD++L+PGL
Sbjct: 1 MRVLLVTGKLAEEMVRKYGKGADVKVYNIDIAAFITPSM----LENEDFSGYDLVLVPGL 56
Query: 61 VRGST-EVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDSLKKVRD 119
E E R G+ GP +A DL VLK I + + S +IPA L +SL+
Sbjct: 57 TYSHNWEDFERRKGVKVRLGPIHAYDLQHVLKLIGK-VEFSHKIPACRLV--ESLRAEET 113
Query: 120 IRNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEIKKRAEYYLG 179
+R AL + F +G + VG ++VAEI A +++ + ++Y
Sbjct: 114 LREID--------ALDEDCAFEIGGVKVGGSSRMKVVAEI--ASFCDFDDLRAKIDHYTE 163
Query: 180 EGADIIDLGMISGETNLEFI-ETIPELKEMIDAPISLDSLNTKELERGLEF-VDMVLSVD 237
GADIID+G + E + E++ +T+ + P+S+D+ ++K +E ++ VDMV+S+
Sbjct: 164 SGADIIDIG-VPLEFDKEWLHKTLKIAVDHSKLPLSIDTFSSKAIEIAVKHGVDMVMSIS 222
Query: 238 WGNVE--ELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYK--RIIVDPI 293
N++ +LI ++ VV++ D ++ L L +G K R+I DPI
Sbjct: 223 MDNLKALDLIENQAVVVVERD----------------IDGLLNLVERVGEKVERVIADPI 266
Query: 294 LEHYPNFSRSLVAFYLYRSRNERDVMLAGVGNVTEMMDADSPGINALLASISSELKLSLL 353
L+ + S+ + +R R+E+ +L G GNVTE+ DADS GINALLA I+ ELK +LL
Sbjct: 267 LDPPLKVAESIGRYAEFRRRDEKTPLLFGAGNVTELSDADSIGINALLAFIAEELKCNLL 326
Query: 354 LTTEVSRKCVGSIRELRRGIDMTLLGGV-----KDVGLDLLILKEK--------RPKSVK 400
TTE S K GS+REL + + KD G+ LL LKEK V+
Sbjct: 327 FTTEASPKTFGSVRELNIASYLAKAAKIRNSPPKDAGVSLLALKEKVRYEERVELDDFVR 386
Query: 401 FEVSRNLIKARRKDVKLEKIYFRIFTDKDEIYVNAYRGTELVMTIVGSEPNEIIDTILEM 460
E +R ++ D ++ + +I D MTIVG + E+ DT ++
Sbjct: 387 AEETREFVRDPLGDFIIQVVDGKIVCKHDR------------MTIVGEKAKEVADTAIKN 434
Query: 461 FNISPR--HAFYLGRELEKAFTAIKLRKSYVQEGGLFTDFYSQ 501
N+ R HA YLGREL KA A L+KSY+Q+ L FY +
Sbjct: 435 -NLLSRLDHAAYLGRELMKAEIAALLKKSYIQDRELNFGFYQK 476
>gb|AAK42562.1| Dihydropteroate synthase, putative [Sulfolobus solfataricus]
Length = 498
Score = 167 bits (419), Expect = 2e-40
Identities = 150/513 (29%), Positives = 257/513 (49%), Gaps = 50/513 (9%)
Query: 1 MKILLVTGRLAEPLVRKYGKGC-----DVFVAPVTVAAFLTPRMIADFLEKAGVKGYDMI 55
MK+L+VTG LA P++ + K ++ V VA+ ++ + IA+ L++ D I
Sbjct: 1 MKVLVVTGTLAAPILSEVAKNIKDTKVEIKVLNYPVASLMSTKFIAENLKQTKFDA-DYI 59
Query: 56 LIPGLVRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELFSRDSLK 115
L+PGLV G +++EE G+ TFKG A DLP V++A+K G +LS AD++ +
Sbjct: 60 LLPGLVYGDAKIVEEVTGVRTFKGTEEAWDLPRVIEALKNGIQLSTTESADKI-----IG 114
Query: 116 KVRDIRNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTRIVAEIVDAPRLSPSEIKKRAE 175
K+ +I K R + + + + P P RI EI + +
Sbjct: 115 KMDNIEEKLRKMEEEAKISFEINGIKITTYPP----PFRIFLEIDNKQEFEKLD------ 164
Query: 176 YYLGEGADIIDLGMISGETNLEFIETIPELKEMID--APISLDSLNTKELERGL----EF 229
+ + D++ LG G +L+ ++ ++K+++D + +D+ + +EL+ G+ F
Sbjct: 165 -RIRKNVDVVVLGFPVGHYDLDEVKN--KVKQLVDYGYVVGIDAESPRELKEGVRAGASF 221
Query: 230 VDMVLSVDWGNVEELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYKRII 289
V + ++ +EE+ + V+ P N + R E L + A G+ ++I
Sbjct: 222 VFNLNENNFEELEEIRKEAAFVVAP---------FNTENRGEITIDLVKKAKQKGFDKLI 272
Query: 290 VDPILEHYPNFSRSLVAFYLYRSRNERDV-MLAGVGNVTEMMDADSPGINALLASISSEL 348
DP+L S + Y Y +D+ +L G+ NVTE++DADS G+NALL +I+ EL
Sbjct: 273 ADPVLSPPLRGLVSSIIGYKYVRETLQDIPILMGILNVTELIDADSIGMNALLTAIAGEL 332
Query: 349 KLSLLLTTEVSRKCVGS--IRELRRGIDMTLLGG--VKDVGLDLLILKEKRPKSVKFEVS 404
+S LL E + S + + + I + L KD+G+DLL+LK+KR F +
Sbjct: 333 GISNLLIMEKGKTRWSSWEVSQATKMISVALKENRLPKDIGIDLLVLKDKRRFRESF--N 390
Query: 405 RNLIKARRKDVKLEKIYF-RIFTDKDEIYVNAYRGTELVMTIVGSEPNEI-IDTILEMFN 462
++I RR + +++ F +IF +D V ++ TI G + I + I + +
Sbjct: 391 ADVIVNRRIEPEMDNTGFAKIFVSEDGFGVEWIGKNKI--TIKGKDGLSIGRELIRRVKD 448
Query: 463 ISPRHAFYLGRELEKAFTAIKLRKSYVQEGGLF 495
IS HA Y+G EL KA A +L K+Y+Q+ LF
Sbjct: 449 ISKEHAVYIGYELAKAEIAYQLDKNYIQDKPLF 481
>pir||E72474 hypothetical protein APE2438 - Aeropyrum pernix (strain K1)
>gi|5106142|dbj|BAA81453.1| (AP000064) 515aa long
hypothetical protein [Aeropyrum pernix]
Length = 515
Score = 115 bits (286), Expect = 9e-25
Identities = 131/513 (25%), Positives = 221/513 (42%), Gaps = 51/513 (9%)
Query: 1 MKILLVTGR----LAEPLVRKYGKGCDVFVAPVTVAAFLTPRMIA-------DFLEKAGV 49
+++ L+T R L E ++R+ G+ +V PV L+ + IA D LE+A
Sbjct: 16 IRVGLITSRSAKGLIEGILRESGQEAEVIDLPVHAIGMLSTKTIAKILRSRRDLLERA-- 73
Query: 50 KGYDMILIPGLVRGSTEVIEERIGIPTFKGPRNAVDLPVVLKAIKQGFKLSKEIPADELF 109
+ D+++IPG VRG VI + +G P +KG + V +P ++K ++ G KL E PA+E+
Sbjct: 74 RSVDILVIPGHVRGDAAVISKVVGRPVYKGTVSPVYIPDIMKILRSGGKLDTEKPAEEVV 133
Query: 110 SRDSLKKVRDIRNKTRNKSYVERALKKPWNFLVGSLPVGLDFPTR-IVAEIVDAPRLSPS 168
K+ D +K + F VGSL + L P +VAEI P ++
Sbjct: 134 ------KLSDYTSKIVFREA----------FRVGSLRIPLKPPPLLVVAEI--PPTVAED 175
Query: 169 EIKKRAEYYLGEGADIIDLGM-ISGETNLEFIETIPELKEMIDAPISLDSLNTKELERGL 227
I A +GA ++ +G + + + L + D+P+ ++ L
Sbjct: 176 GIAGLAARMERDGASMVAVGTGFDDDPQVVHEKVRTALSALKDSPVIAETPTLDHAYSAL 235
Query: 228 EFVDMVLSVDWGNVEELITDKPVVLIPTDMKRGKFYSNPQERVESLEKLKELATSLGYKR 287
+ + + L ++KP +P D F E+ E L K E + GY +
Sbjct: 236 KAGASGVIMPVETAVRLASEKP---LPGDA----FIIVSGEQPEELAKAVESLRTSGYSK 288
Query: 288 IIVDPILEHYPNFSRSLVAFYLYR--SRNERDVMLAGVGNVTEMMDADSPGINALLASIS 345
+ VDP L P L + +R SR ++ NV E + ADS G++ALLA ++
Sbjct: 289 VAVDPSLS--PPLLGLLESIERFRRASRLLNVPLVFSAANVAEEVQADSHGVHALLALMA 346
Query: 346 SELKLSLLLTTEVSRKCVGSIREL----RRGIDMTLLGGVKDVGLDLLILKEKRPKSVKF 401
E S+ E S K S E R L + L ++K+ R
Sbjct: 347 LEAGASIYYVVEDSYKSYRSTAEAAEAARYASAARTLFSPRIPLTRLFVVKQPRRPPNPV 406
Query: 402 EVSRNLIKARRKDVKLEKI---YFRIFTDKDEIYVNAYRGTELVMTIVGSEPNEIIDTIL 458
E + +++ + ++ ++ I + Y +T G +P ++ +
Sbjct: 407 EPPGERVNVDYIPPSMDRTGYAHIQVDHERGVIMLTFYPAGGEPVTFEGRKPTSLLRALT 466
Query: 459 EMFNISPRHAFYLGRELEKAFTAIKLRKSYVQE 491
F +S HA Y+G EL KA A+ L K+YVQ+
Sbjct: 467 SRFPVSSEHAGYIGYELAKAEIALALGKTYVQD 499
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174531124
Number of Sequences: 2977
Number of extensions: 7433165
Number of successful extensions: 20241
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20206
Number of HSP's gapped (non-prelim): 8
length of query: 504
length of database: 189,106,746
effective HSP length: 59
effective length of query: 445
effective length of database: 153,796,013
effective search space: 68439225785
effective search space used: 68439225785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)