BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0176 (PAB0176) DE:Hypothetical protein
         (166 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75216 hypothetical protein PAB0176 - Pyrococcus abyssi (st...   337  4e-92
sp|O58019|Y281_PYRHO HYPOTHETICAL PROTEIN PH0281 >gi|7518562|pir...   284  6e-76
sp|Q58805|YE10_METJA HYPOTHETICAL PROTEIN MJ1410 >gi|2128844|pir...    75  5e-13

>pir||D75216 hypothetical protein PAB0176 - Pyrococcus abyssi (strain Orsay)
           >gi|5457688|emb|CAB49179.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 166
           
 Score =  337 bits (856), Expect = 4e-92
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR 60
           MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR
Sbjct: 1   MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR 60

Query: 61  PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR 120
           PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR
Sbjct: 61  PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR 120

Query: 121 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR 166
           EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR
Sbjct: 121 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR 166


>sp|O58019|Y281_PYRHO HYPOTHETICAL PROTEIN PH0281 >gi|7518562|pir||B71453 hypothetical
           protein PH0281 - Pyrococcus horikoshii
           >gi|3256670|dbj|BAA29353.1| (AP000001) 174aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 174
           
 Score =  284 bits (718), Expect = 6e-76
 Identities = 127/166 (76%), Positives = 152/166 (91%)

Query: 1   MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR 60
           MSGELRVRR SSWE DLIL+EAEKYGEL HEFF +VEG+YRDVYAVNE VWK++E + ++
Sbjct: 9   MSGELRVRRVSSWEFDLILREAEKYGELSHEFFSIVEGEYRDVYAVNESVWKLVEKLPLK 68

Query: 61  PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR 120
           PYSLGTFVGTIRVD+NLVEKFYPN+EFFSL+K+ KNY +LGPKASFLFTTGKD PK AV+
Sbjct: 69  PYSLGTFVGTIRVDDNLVEKFYPNIEFFSLVKVTKNYAVLGPKASFLFTTGKDVPKRAVK 128

Query: 121 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR 166
           ++ WQGS+++++ NDLGDIIGIG+INP++D +FIKNLKDVGEFLRR
Sbjct: 129 KLNWQGSRKILIYNDLGDIIGIGMINPRNDEKFIKNLKDVGEFLRR 174


>sp|Q58805|YE10_METJA HYPOTHETICAL PROTEIN MJ1410 >gi|2128844|pir||A64476 hypothetical
           protein MJ1410 - Methanococcus jannaschii
           >gi|1592059|gb|AAB99417.1| (U67581) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 159
           
 Score = 74.9 bits (181), Expect = 5e-13
 Identities = 60/172 (34%), Positives = 90/172 (51%), Gaps = 27/172 (15%)

Query: 5   LRVRRASSWELDLILKEAEKYGE------LLHEFFCVVEGKYRDVYAVNEEVWK---IIE 55
           ++VR+  + E++LI +E  KY +        +E   V+EGK+  V   N E  K   + +
Sbjct: 1   MKVRKLKNAEINLIEEELSKYTDKDFVKSFKYENLIVLEGKWLTVCYTNIETIKKLNMFQ 60

Query: 56  DINMRPYSLGTFVGTIRVDENLVEKFYPNLEFFSLIK--LEKNYVILGPKASFLFTTGKD 113
           DI    +S+G   G I+       KF  +LE F+LI   +  NY I+  KA  LF  G+D
Sbjct: 61  DI----FSVGNVFGEIK------RKFRLSLEGFTLISPNIINNYAIVNEKAEALFLYGRD 110

Query: 114 APKEAVREIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLR 165
             KE++ E+K  G  R+ V N   + +GIGL     D + IKN+KD G +LR
Sbjct: 111 IFKESIIEVK--GFGRIAVFNKNREFLGIGLF----DGKIIKNIKDKGWYLR 156


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64313828
Number of Sequences: 2977
Number of extensions: 2693620
Number of successful extensions: 5434
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5430
Number of HSP's gapped (non-prelim): 3
length of query: 166
length of database: 189,106,746
effective HSP length: 51
effective length of query: 115
effective length of database: 158,583,909
effective search space: 18237149535
effective search space used: 18237149535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)