BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB0176 (PAB0176) DE:Hypothetical protein (166 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||D75216 hypothetical protein PAB0176 - Pyrococcus abyssi (st... 337 4e-92 sp|O58019|Y281_PYRHO HYPOTHETICAL PROTEIN PH0281 >gi|7518562|pir... 284 6e-76 sp|Q58805|YE10_METJA HYPOTHETICAL PROTEIN MJ1410 >gi|2128844|pir... 75 5e-13 >pir||D75216 hypothetical protein PAB0176 - Pyrococcus abyssi (strain Orsay) >gi|5457688|emb|CAB49179.1| (AJ248283) hypothetical protein [Pyrococcus abyssi] Length = 166 Score = 337 bits (856), Expect = 4e-92 Identities = 166/166 (100%), Positives = 166/166 (100%) Query: 1 MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR 60 MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR Sbjct: 1 MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR 60 Query: 61 PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR 120 PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR Sbjct: 61 PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR 120 Query: 121 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR 166 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR Sbjct: 121 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR 166 >sp|O58019|Y281_PYRHO HYPOTHETICAL PROTEIN PH0281 >gi|7518562|pir||B71453 hypothetical protein PH0281 - Pyrococcus horikoshii >gi|3256670|dbj|BAA29353.1| (AP000001) 174aa long hypothetical protein [Pyrococcus horikoshii] Length = 174 Score = 284 bits (718), Expect = 6e-76 Identities = 127/166 (76%), Positives = 152/166 (91%) Query: 1 MSGELRVRRASSWELDLILKEAEKYGELLHEFFCVVEGKYRDVYAVNEEVWKIIEDINMR 60 MSGELRVRR SSWE DLIL+EAEKYGEL HEFF +VEG+YRDVYAVNE VWK++E + ++ Sbjct: 9 MSGELRVRRVSSWEFDLILREAEKYGELSHEFFSIVEGEYRDVYAVNESVWKLVEKLPLK 68 Query: 61 PYSLGTFVGTIRVDENLVEKFYPNLEFFSLIKLEKNYVILGPKASFLFTTGKDAPKEAVR 120 PYSLGTFVGTIRVD+NLVEKFYPN+EFFSL+K+ KNY +LGPKASFLFTTGKD PK AV+ Sbjct: 69 PYSLGTFVGTIRVDDNLVEKFYPNIEFFSLVKVTKNYAVLGPKASFLFTTGKDVPKRAVK 128 Query: 121 EIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLRR 166 ++ WQGS+++++ NDLGDIIGIG+INP++D +FIKNLKDVGEFLRR Sbjct: 129 KLNWQGSRKILIYNDLGDIIGIGMINPRNDEKFIKNLKDVGEFLRR 174 >sp|Q58805|YE10_METJA HYPOTHETICAL PROTEIN MJ1410 >gi|2128844|pir||A64476 hypothetical protein MJ1410 - Methanococcus jannaschii >gi|1592059|gb|AAB99417.1| (U67581) conserved hypothetical protein [Methanococcus jannaschii] Length = 159 Score = 74.9 bits (181), Expect = 5e-13 Identities = 60/172 (34%), Positives = 90/172 (51%), Gaps = 27/172 (15%) Query: 5 LRVRRASSWELDLILKEAEKYGE------LLHEFFCVVEGKYRDVYAVNEEVWK---IIE 55 ++VR+ + E++LI +E KY + +E V+EGK+ V N E K + + Sbjct: 1 MKVRKLKNAEINLIEEELSKYTDKDFVKSFKYENLIVLEGKWLTVCYTNIETIKKLNMFQ 60 Query: 56 DINMRPYSLGTFVGTIRVDENLVEKFYPNLEFFSLIK--LEKNYVILGPKASFLFTTGKD 113 DI +S+G G I+ KF +LE F+LI + NY I+ KA LF G+D Sbjct: 61 DI----FSVGNVFGEIK------RKFRLSLEGFTLISPNIINNYAIVNEKAEALFLYGRD 110 Query: 114 APKEAVREIKWQGSKRVVVLNDLGDIIGIGLINPKSDRRFIKNLKDVGEFLR 165 KE++ E+K G R+ V N + +GIGL D + IKN+KD G +LR Sbjct: 111 IFKESIIEVK--GFGRIAVFNKNREFLGIGLF----DGKIIKNIKDKGWYLR 156 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.322 0.143 0.419 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64313828 Number of Sequences: 2977 Number of extensions: 2693620 Number of successful extensions: 5434 Number of sequences better than 1.0e-10: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 5430 Number of HSP's gapped (non-prelim): 3 length of query: 166 length of database: 189,106,746 effective HSP length: 51 effective length of query: 115 effective length of database: 158,583,909 effective search space: 18237149535 effective search space used: 18237149535 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.8 bits) S2: 162 (67.5 bits)