BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0178 (PAB0178) DE:Hypothetical protein
(185 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75216 hypothetical protein PAB0178 - Pyrococcus abyssi (st... 370 e-102
gi|11497820 conserved hypothetical protein [Archaeoglobus fulgid... 204 7e-52
pir||D64442 conserved hypothetical protein MJ1141 - Methanococcu... 106 1e-22
pir||H69173 conserved hypothetical protein MTH559 - Methanobacte... 105 3e-22
emb|CAA70998.1| (Y09870) hypothetical protein [Methanosarcina ba... 99 3e-20
emb|CAA70993.1| (Y09870) hypothetical protein [Methanosarcina ba... 89 5e-17
>pir||H75216 hypothetical protein PAB0178 - Pyrococcus abyssi (strain Orsay)
>gi|5457692|emb|CAB49183.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 185
Score = 370 bits (941), Expect = e-102
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MKMERIIAKLASVGADLSTRSAVRIALSIISEDEELTDQIYVEIKNKAYRDDFAKVPVEK 60
MKMERIIAKLASVGADLSTRSAVRIALSIISEDEELTDQIYVEIKNKAYRDDFAKVPVEK
Sbjct: 1 MKMERIIAKLASVGADLSTRSAVRIALSIISEDEELTDQIYVEIKNKAYRDDFAKVPVEK 60
Query: 61 RAVFIPQCLRNIKECEAEFSEYGWVCKKCEKCVIGEIIEYGESLGYRQFYIVPGGSLVKK 120
RAVFIPQCLRNIKECEAEFSEYGWVCKKCEKCVIGEIIEYGESLGYRQFYIVPGGSLVKK
Sbjct: 61 RAVFIPQCLRNIKECEAEFSEYGWVCKKCEKCVIGEIIEYGESLGYRQFYIVPGGSLVKK 120
Query: 121 ILKEKVPKGEIQGAIGIACWPELAETAEKLSMLKIPMLGVPLLRVGCINTIVDVERVKEV 180
ILKEKVPKGEIQGAIGIACWPELAETAEKLSMLKIPMLGVPLLRVGCINTIVDVERVKEV
Sbjct: 121 ILKEKVPKGEIQGAIGIACWPELAETAEKLSMLKIPMLGVPLLRVGCINTIVDVERVKEV 180
Query: 181 LKLGL 185
LKLGL
Sbjct: 181 LKLGL 185
>gi|11497820 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451013|pir||D69275 conserved hypothetical protein
AF0204 - Archaeoglobus fulgidus
>gi|2650439|gb|AAB91028.1| (AE001092) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 196
Score = 204 bits (513), Expect = 7e-52
Identities = 97/183 (53%), Positives = 134/183 (73%), Gaps = 2/183 (1%)
Query: 3 MERIIAKLASVGADLSTRSAVRIALSIISEDEELTDQIYVEIKNKAYRDDFAKVPVEKRA 62
++RII+KL S GADLS+++A++ AL I+ EDE L D IY+ +KN+AYR D+A++PVEKR
Sbjct: 2 IDRIISKLVSAGADLSSKNAIKAALKILGEDEGLADYIYILVKNRAYRKDWAELPVEKRL 61
Query: 63 VFIPQCLRNIKECEAEFSEYGWVCKKCEKCVIGEIIEYGESLGYRQFYIVPGGSLVKKIL 122
+F+PQCLRN K C+AE +E G++CKKC C I EI+E E LGY+ YIVPGGS++ +IL
Sbjct: 62 IFLPQCLRNSKSCQAELTEKGYICKKCGGCDIAEIVETAEELGYKHAYIVPGGSMIYRIL 121
Query: 123 KEKVPKGEIQGAIGIACWPELAETAEKLSMLKIPMLGVPLLRVGCINTIVDVERVKEVLK 182
K + G +G+AC PEL E +E+L++ IP VPL + GC++T VDVE VK LK
Sbjct: 122 K-SLDMGSF-ACLGVACLPELCEASERLTLKDIPHQCVPLRKTGCVDTEVDVEEVKAFLK 179
Query: 183 LGL 185
G+
Sbjct: 180 AGI 182
>pir||D64442 conserved hypothetical protein MJ1141 - Methanococcus jannaschii
>gi|1591773|gb|AAB99141.1| (U67556) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 214
Score = 106 bits (263), Expect = 1e-22
Identities = 62/161 (38%), Positives = 92/161 (56%), Gaps = 8/161 (4%)
Query: 22 AVRIALSIISEDEELTDQIYVEIKNKAYRDDFAKVPVEKRAVFIPQCLRNIKECEAEFSE 81
++ + + ++ E+ ++ +E NK Y D F K +KR + +P CLR+ K C A+ +
Sbjct: 60 SILLKIFLLIGTEDTFYRVGIEFYNKYYEDRFKKA--KKRVLILPHCLRDTK-CPAKLTP 116
Query: 82 YGWVCKKCEKCVIGEIIEYGESLGYRQFYIVPGGSLVKKILKEKVPKGEIQGAIGIACWP 141
G C C +C +GEII+ E GY+ YIVPG + +K+ILKE+ P + G+AC
Sbjct: 117 KGVECIFCNRCRVGEIIKVAEEKGYK-VYIVPGSTFLKRILKEEKP----EAVFGVACNR 171
Query: 142 ELAETAEKLSMLKIPMLGVPLLRVGCINTIVDVERVKEVLK 182
+L LS IP G PLLR GCINT+VDV+ + LK
Sbjct: 172 DLFYGMNMLSRKGIPSQGQPLLRDGCINTLVDVDELITRLK 212
>pir||H69173 conserved hypothetical protein MTH559 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621635|gb|AAB85065.1| (AE000838) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 232
Score = 105 bits (260), Expect = 3e-22
Identities = 59/153 (38%), Positives = 86/153 (55%), Gaps = 10/153 (6%)
Query: 33 DEELTDQIYVEIKNKAYRDDFAKVPVEKRAVFIPQCLRNIKECEAEFSEYGWVCKKCEKC 92
+ + DQI VE++NK F + +A+ +P CLRN ECEA G +C C +C
Sbjct: 69 NSRIVDQIGVEVRNKINEKRFKSIDPHDKALVLPHCLRN-PECEARLERTGLICTGCNRC 127
Query: 93 VIGEIIEYGESLGYRQFYIVPGGSLVKKILKEKVPKGEIQGAIGIACWPELAETAEKLSM 152
+IG+I E E++GY F ++PG + +KKI++E + +G+AC+ +L KLS
Sbjct: 128 IIGKIKERAEAIGYTVF-VIPGSTFIKKIVEEH----RFKAVLGVACYQDLNLAMMKLS- 181
Query: 153 LKIPMLGVPLLRVGCINTIVDVERVKEVLKLGL 185
+ GVPLLR GC T VD V E K+GL
Sbjct: 182 -RFSPQGVPLLRDGCFKTKVDFRAVLE--KMGL 211
>emb|CAA70998.1| (Y09870) hypothetical protein [Methanosarcina barkeri]
Length = 166
Score = 99.1 bits (243), Expect = 3e-20
Identities = 54/151 (35%), Positives = 91/151 (59%), Gaps = 10/151 (6%)
Query: 34 EELTDQIYVEIKNKAYRDDFAKVPVEKRAVFIPQCLRNIKECEAEFSE-YGWVCKKCEKC 92
+ L D I ++++N +DF +V +K+ + +PQCLR+ C+A +G+ CK+C C
Sbjct: 22 DTLVDDILIDVRNAVTYNDFRRVK-DKKILLLPQCLRH-PNCKARCDPVHGYECKRCGLC 79
Query: 93 VIGEIIEYGESLGYRQFYIVPGGSLVKKILKEKVPKGEIQGAIGIACWPELAETAEKLSM 152
I +I E + + Q +++PGGS VKKI KE P + +G+AC+ EL+E + +S
Sbjct: 80 DISKISEAADRCNF-QVFVIPGGSFVKKIFKEYKP----EACLGVACYNELSENMQAVSF 134
Query: 153 LKIPMLGVPLLRVGCINTIVDVERVKEVLKL 183
+P+ GV LLR GC NT +VE + + +++
Sbjct: 135 --VPVQGVLLLRDGCFNTEANVEEIIQKMEM 163
>emb|CAA70993.1| (Y09870) hypothetical protein [Methanosarcina barkeri]
Length = 206
Score = 88.5 bits (216), Expect = 5e-17
Identities = 52/151 (34%), Positives = 82/151 (53%), Gaps = 8/151 (5%)
Query: 33 DEELTDQIYVEIKNKAYRDDFAKVPVEKRAVFIPQCLRNIKECEAEFSEYGWVCKKCEKC 92
D + D+ +KN+AY+ DFAK +KR + P C+R++ +C A ++ G CK C KC
Sbjct: 61 DTRVLDKWMASLKNRAYKSDFAKT--KKRILLAPHCMRSL-DCPAYSTQTGIQCKSCGKC 117
Query: 93 VIGEIIEYGESLGYRQFYIVPGGSLVKKILKEKVPKGEIQGAIGIACWPELAETAEKLSM 152
V ++ + E GY+ F IV G S VK ILK + + G + IAC E+ + L
Sbjct: 118 VFTQLKKDAEKYGYKLF-IVTGSSYVKNILKME----DADGVLMIACDYEINKVMRALKG 172
Query: 153 LKIPMLGVPLLRVGCINTIVDVERVKEVLKL 183
+ G+P+ R GC T V+ + V +V ++
Sbjct: 173 KGVVSYGIPMERDGCFGTEVNYQNVLDVFEI 203
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63692633
Number of Sequences: 2977
Number of extensions: 2613382
Number of successful extensions: 5690
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5673
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 189,106,746
effective HSP length: 53
effective length of query: 132
effective length of database: 157,386,935
effective search space: 20775075420
effective search space used: 20775075420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)