BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0179 (PAB0179) DE:Hypothetical protein
         (267 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75217 hypothetical protein PAB0179 - Pyrococcus abyssi (st...   536  e-151
pir||H71000 hypothetical protein PH1304 - Pyrococcus horikoshii ...   374  e-103

>pir||A75217 hypothetical protein PAB0179 - Pyrococcus abyssi (strain Orsay)
           >gi|5457693|emb|CAB49184.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 267
           
 Score =  536 bits (1365), Expect = e-151
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MGLEELYKYLRWRMDPEDKRAVERFHRIVEVFEKLKDSKLISGSRVLDICAGTGIAGVAL 60
           MGLEELYKYLRWRMDPEDKRAVERFHRIVEVFEKLKDSKLISGSRVLDICAGTGIAGVAL
Sbjct: 1   MGLEELYKYLRWRMDPEDKRAVERFHRIVEVFEKLKDSKLISGSRVLDICAGTGIAGVAL 60

Query: 61  AKVLNAKKLTVLDVRREDLDKVEKWMEVAGIDVEVEKIVGDAKKVGELVEEHDVAVLFGL 120
           AKVLNAKKLTVLDVRREDLDKVEKWMEVAGIDVEVEKIVGDAKKVGELVEEHDVAVLFGL
Sbjct: 61  AKVLNAKKLTVLDVRREDLDKVEKWMEVAGIDVEVEKIVGDAKKVGELVEEHDVAVLFGL 120

Query: 121 TMPHFNAFDAVKLFAGVASILSENGVFILEETDRVYGIMYLVGYKDFLVETKGKDYTLIS 180
           TMPHFNAFDAVKLFAGVASILSENGVFILEETDRVYGIMYLVGYKDFLVETKGKDYTLIS
Sbjct: 121 TMPHFNAFDAVKLFAGVASILSENGVFILEETDRVYGIMYLVGYKDFLVETKGKDYTLIS 180

Query: 181 VHEGYDPVKGVFKRTYYKLPGFEKVSEEEHRLWDLASQLALGSIFFKDYKLISKSEHGVE 240
           VHEGYDPVKGVFKRTYYKLPGFEKVSEEEHRLWDLASQLALGSIFFKDYKLISKSEHGVE
Sbjct: 181 VHEGYDPVKGVFKRTYYKLPGFEKVSEEEHRLWDLASQLALGSIFFKDYKLISKSEHGVE 240

Query: 241 GVSHLVYLRIPRKDVAETIYTAFLDKD 267
           GVSHLVYLRIPRKDVAETIYTAFLDKD
Sbjct: 241 GVSHLVYLRIPRKDVAETIYTAFLDKD 267


>pir||H71000 hypothetical protein PH1304 - Pyrococcus horikoshii
           >gi|3257725|dbj|BAA30408.1| (AP000006) 276aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 276
           
 Score =  374 bits (951), Expect = e-103
 Identities = 175/260 (67%), Positives = 222/260 (85%), Gaps = 1/260 (0%)

Query: 1   MGLEELYKYLRWRMDPEDKRAVERFHRIVEVFEKLKDSKLI-SGSRVLDICAGTGIAGVA 59
           M LEELYKYL WRMDP D+RA++RF +I+EVF+K +DS L+ + +++LDICAGTGIAGVA
Sbjct: 14  MNLEELYKYLYWRMDPSDERAIKRFQQIIEVFKKFRDSGLVPTEAKILDICAGTGIAGVA 73

Query: 60  LAKVLNAKKLTVLDVRREDLDKVEKWMEVAGIDVEVEKIVGDAKKVGELVEEHDVAVLFG 119
           +AKV  AK LT+LD R  DL K + W+++AG++++ + +VGDA+ V ELV+EHDVA+L+G
Sbjct: 74  MAKVTKAKTLTLLDARESDLKKSKDWVKIAGLELKPKLVVGDARNVAELVDEHDVAILWG 133

Query: 120 LTMPHFNAFDAVKLFAGVASILSENGVFILEETDRVYGIMYLVGYKDFLVETKGKDYTLI 179
           LTMPHF+AFDAVKLFAGVASILSE+GVF+LEE+DRVY I Y  GYKD LVETK   YTLI
Sbjct: 134 LTMPHFDAFDAVKLFAGVASILSEDGVFLLEESDRVYSIFYRTGYKDILVETKTDTYTLI 193

Query: 180 SVHEGYDPVKGVFKRTYYKLPGFEKVSEEEHRLWDLASQLALGSIFFKDYKLISKSEHGV 239
           S+H+GYDP++GVFKRTYYKLPGFEK++E+ HRLWD+ASQL+LGS+FFK+YK I+ SEHGV
Sbjct: 194 SIHDGYDPIRGVFKRTYYKLPGFEKITEQAHRLWDIASQLSLGSVFFKEYKAITPSEHGV 253

Query: 240 EGVSHLVYLRIPRKDVAETI 259
            GVS ++Y R PRK VA+ I
Sbjct: 254 IGVSTVLYFRKPRKKVADEI 273


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.141    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97475008
Number of Sequences: 2977
Number of extensions: 3989731
Number of successful extensions: 11646
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11643
Number of HSP's gapped (non-prelim): 2
length of query: 267
length of database: 189,106,746
effective HSP length: 55
effective length of query: 212
effective length of database: 156,189,961
effective search space: 33112271732
effective search space used: 33112271732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)